edf2csv 0.3.4 → 0.3.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +81 -0
- package/dist/convert/run.d.ts.map +1 -1
- package/dist/convert/run.js +9 -3
- package/dist/convert/run.js.map +1 -1
- package/dist/convert/time-range.d.ts.map +1 -1
- package/dist/convert/time-range.js +21 -5
- package/dist/convert/time-range.js.map +1 -1
- package/package.json +1 -1
package/CHANGELOG.md
CHANGED
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@@ -3,6 +3,87 @@
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Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
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major version is 0, a minor bump may contain breaking changes.
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## 0.3.6
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### Fixed: time errors did not show where the value they quote begins and ends
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The errors from parsing a time have always quoted what was typed. The errors from applying it
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did not, so the value ran into the sentence around it:
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```
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edf2csv recording.edf --start " 5s "
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error: --start 5s is at or past the end of this 2s recording.
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```
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Read back, the value appears to be `5s is`, and the surrounding spaces — which are the whole
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reason a time assembled by a shell went wrong — cannot be seen at all. Both kinds of message
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now quote it the same way:
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```
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error: --start " 5s " is at or past the end of this 2s recording.
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```
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Where nothing was typed there is nothing to quote, so a window rejected because of a computed
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end still reports the arithmetic plainly: `ends at "0", which is not after its start at 0s`.
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What is quoted is what the caller wrote, never a value derived from it — `--start 4h` has never
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reported itself as `14400s`.
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### The `--stdout` refusal now names the rates instead of restating its own count
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```
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--stdout needs exactly one table, but this recording produces 3 (its channels use 3 different sampling rates).
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Narrow it to one rate with --channels, or convert to a directory instead.
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```
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The hint says to narrow the selection; the message spent its parenthetical repeating the number
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it had just given, and never said what there was to narrow to:
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```
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--stdout needs exactly one table, but this recording produces 3, one for each sampling rate its
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channels use (256 Hz, 128 Hz, 1 Hz).
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Narrow it to one rate with --channels, or convert to a directory instead.
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```
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It follows the selection, like the mixed-rate warning did in 0.3.2: narrowing a three-rate
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recording to two reports those two.
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## 0.3.5
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### The cross-check now covers BDF and annotations
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0.3.4 made the pyEDFlib comparison a command, but it only read `.edf` files carrying signal
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data. That left out the two places a reader is most likely to be quietly wrong.
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**24-bit BDF.** A BDF sample is three bytes, and the sign has to be extended by hand. A value
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that comes out unsigned is not obviously wrong to look at: it is a large positive number where
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a large negative one belongs, which is exactly the kind of mistake that survives review. A
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quarter of the generated recordings are now BDF over BioSemi's own digital range, with both
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extremes present in every one.
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**Annotations.** Half the recordings now carry EDF+ or BDF+ events, including one with no
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duration and one whose duration is zero, and `annotations.csv` is compared against pyEDFlib's
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own reading of the TALs — onset, duration and text. The two disagree on one point by design:
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pyEDFlib reports a missing duration as `-1.0` where edf2csv leaves the cell empty, a duration
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nobody recorded not being a duration of minus one second. That difference is expected and
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treated as agreement.
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```
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Compared 16,943 sample values and 120 annotations across 75 recordings.
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Every value agreed.
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```
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Both halves were confirmed capable of failing before being trusted: a one-part-in-a-million
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error in the gain, and a one-millisecond shift in every annotation onset. Each exits 1 and
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names the sample.
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Writing the recordings turned up a fault in the generator rather than in the tool. A record's
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timekeeping TAL states where that record begins, which is its index times the record duration —
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it was writing the index. Recordings whose records are not one second long were therefore
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internally inconsistent, and pyEDFlib rejected precisely those rather than reading them wrongly,
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which is a good argument for comparing against something strict.
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No behaviour of the tool changed in this release.
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## 0.3.4
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### Added: `npm run crossvalidate`, the pyEDFlib comparison as something you can run
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@@ -1 +1 @@
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-
{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAWD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,
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{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAWD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA+GrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}
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package/dist/convert/run.js
CHANGED
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@@ -13,7 +13,7 @@ import { finished, pipeline } from 'node:stream/promises';
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import { createGzip, gzipSync } from 'node:zlib';
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import path from 'node:path';
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import { EdfFile } from '../edf/reader.js';
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import { describeFormat, formatWallClock } from '../edf/header.js';
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import { describeFormat, formatRates, formatWallClock } from '../edf/header.js';
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import { BufferedLineWriter, csvRow } from '../format/csv.js';
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import { fixed, makeSampleFormatter } from '../format/number.js';
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import { buildPlan, withoutFileRateWarning } from './plan.js';
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@@ -56,8 +56,14 @@ export async function convert(inputPath, options = {}) {
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throw new ConversionError('OUTPUT_UNWRITABLE', '--stdout has no signal data to write because --annotations-only was given.', 'Drop one of the two flags.');
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}
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if (plan.groups.length !== 1) {
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throw new ConversionError('OUTPUT_UNWRITABLE',
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throw new ConversionError('OUTPUT_UNWRITABLE',
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// Naming the rates is the point: the hint says to narrow the selection, and this
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// is what there is to narrow it to. The parenthetical used to repeat the count
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// that had just been given — "produces 3 (its channels use 3 different sampling
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// rates)" — which told nobody anything they could act on.
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`--stdout needs exactly one table, but this recording produces ${plan.groups.length}, ` +
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`one for each sampling rate its channels use ` +
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`(${formatRates(plan.groups.map((g) => g.rate)).map((r) => `${r} Hz`).join(', ')}).`, 'Narrow it to one rate with --channels, or convert to a directory instead.');
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}
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const written = await writeSignalFiles(file, plan, null, timing.starts, options);
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return {
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package/dist/convert/run.js.map
CHANGED
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@@ -1 +1 @@
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1
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+
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{"version":3,"file":"time-range.d.ts","sourceRoot":"","sources":["../../src/convert/time-range.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,qBAAa,cAAe,SAAQ,KAAK;gBAC3B,OAAO,EAAE,MAAM;CAI5B;AAwBD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAkEvE;AASD,MAAM,WAAW,aAAa;IAC5B,uEAAuE;IACvE,YAAY,EAAE,MAAM,CAAC;IACrB,iCAAiC;IACjC,UAAU,EAAE,MAAM,CAAC;IACnB,6CAA6C;IAC7C,WAAW,EAAE,MAAM,CAAC;IACpB,yDAAyD;IACzD,SAAS,EAAE,MAAM,CAAC;IAClB,uDAAuD;IACvD,gBAAgB,EAAE,OAAO,CAAC;IAC1B,0DAA0D;IAC1D,qBAAqB,EAAE,MAAM,CAAC;IAC9B,6DAA6D;IAC7D,mBAAmB,EAAE,MAAM,CAAC;CAC7B;AAED,yDAAyD;AACzD,eAAO,MAAM,kBAAkB,OAAO,CAAC;AAEvC,+EAA+E;AAC/E,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAEnG;AAED,mFAAmF;AACnF,wBAAgB,mBAAmB,CAAC,OAAO,EAAE;IAC3C,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;CACpB,GAAG,MAAM,CAUT;AAED;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE;IACpC,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,mFAAmF;IACnF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,GAAG,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,2EAA2E;IAC3E,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB;;;OAGG;IACH,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,GAAG,SAAS,CAAC;CAChD,GAAG,aAAa,
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+
{"version":3,"file":"time-range.d.ts","sourceRoot":"","sources":["../../src/convert/time-range.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,qBAAa,cAAe,SAAQ,KAAK;gBAC3B,OAAO,EAAE,MAAM;CAI5B;AAwBD;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAkEvE;AASD,MAAM,WAAW,aAAa;IAC5B,uEAAuE;IACvE,YAAY,EAAE,MAAM,CAAC;IACrB,iCAAiC;IACjC,UAAU,EAAE,MAAM,CAAC;IACnB,6CAA6C;IAC7C,WAAW,EAAE,MAAM,CAAC;IACpB,yDAAyD;IACzD,SAAS,EAAE,MAAM,CAAC;IAClB,uDAAuD;IACvD,gBAAgB,EAAE,OAAO,CAAC;IAC1B,0DAA0D;IAC1D,qBAAqB,EAAE,MAAM,CAAC;IAC9B,6DAA6D;IAC7D,mBAAmB,EAAE,MAAM,CAAC;CAC7B;AAED,yDAAyD;AACzD,eAAO,MAAM,kBAAkB,OAAO,CAAC;AAEvC,+EAA+E;AAC/E,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAEnG;AAED,mFAAmF;AACnF,wBAAgB,mBAAmB,CAAC,OAAO,EAAE;IAC3C,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,gBAAgB,EAAE,MAAM,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;CACpB,GAAG,MAAM,CAUT;AAED;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE;IACpC,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,mFAAmF;IACnF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,GAAG,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,2EAA2E;IAC3E,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB;;;OAGG;IACH,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,GAAG,SAAS,CAAC;CAChD,GAAG,aAAa,CA6DhB"}
|
|
@@ -134,9 +134,17 @@ export function resolveRange(options) {
|
|
|
134
134
|
else
|
|
135
135
|
endSeconds = latest;
|
|
136
136
|
if (startSeconds >= latest) {
|
|
137
|
-
|
|
138
|
-
|
|
139
|
-
|
|
137
|
+
/*
|
|
138
|
+
Quote what was typed. Reporting the parsed seconds meant `--start 4h` came back as
|
|
139
|
+
"--start 14400s is at or past the end", which reads as a value the user never gave.
|
|
140
|
+
|
|
141
|
+
In quotation marks, which the parse errors above have always used and this did not.
|
|
142
|
+
Without them the value ran into the sentence: `--start " 5s "` printed as
|
|
143
|
+
`--start 5s is at or past the end`, where the value appears to be `5s is` and
|
|
144
|
+
the surrounding spaces — the actual reason a shell-built argument went wrong — are
|
|
145
|
+
invisible.
|
|
146
|
+
*/
|
|
147
|
+
throw new TimeRangeError(`--start ${quoted(options.startText, startSeconds)} is at or past the end of this ` +
|
|
140
148
|
`${formatSeconds(latest)} recording.`);
|
|
141
149
|
}
|
|
142
150
|
if (endSeconds <= startSeconds) {
|
|
@@ -144,9 +152,9 @@ export function resolveRange(options) {
|
|
|
144
152
|
// end is only echoed when --end was passed: with --duration the end is computed here,
|
|
145
153
|
// so there is no typed value to quote and the arithmetic result is the honest thing.
|
|
146
154
|
const endShown = options.end !== undefined && options.endText !== undefined
|
|
147
|
-
? options.endText
|
|
155
|
+
? quoted(options.endText, endSeconds)
|
|
148
156
|
: formatSeconds(endSeconds);
|
|
149
|
-
const startShown = options.startText
|
|
157
|
+
const startShown = quoted(options.startText, startSeconds);
|
|
150
158
|
throw new TimeRangeError(`The requested window ends at ${endShown}, which is not after its start at ${startShown}.`);
|
|
151
159
|
}
|
|
152
160
|
const clampedEnd = Math.min(endSeconds, latest);
|
|
@@ -200,6 +208,14 @@ function selectRecords(options, startSeconds, endSeconds) {
|
|
|
200
208
|
}
|
|
201
209
|
return first < last ? { startRecord: first, endRecord: last } : { startRecord: 0, endRecord: 0 };
|
|
202
210
|
}
|
|
211
|
+
/**
|
|
212
|
+
* The value as the caller typed it, in quotation marks, or the parsed seconds if they gave
|
|
213
|
+
* none. The marks show where the value begins and ends, which matters most for the values
|
|
214
|
+
* that went wrong because of what surrounds them.
|
|
215
|
+
*/
|
|
216
|
+
function quoted(text, seconds) {
|
|
217
|
+
return text === undefined ? formatSeconds(seconds) : `"${text}"`;
|
|
218
|
+
}
|
|
203
219
|
function formatSeconds(seconds) {
|
|
204
220
|
return `${Number(seconds.toFixed(3))}s`;
|
|
205
221
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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package/package.json
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