edf2csv 0.2.5 → 0.2.7

package/CHANGELOG.md

@@ -3,6 +3,39 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
 
+## 0.2.7
+
+### Fixed: a failed sidecar write reported a raw filesystem error
+
+`channels.csv`, `annotations.csv` and `metadata.json` were written with a bare `writeFile`, so a
+failure escaped as whatever the filesystem said and nothing else:
+
+```
+error: EISDIR: illegal operation on a directory, open '/path/out/channels.csv'
+```
+
+No hint, and — more importantly — no mention that the signal files had already been written, so the
+output directory was left half-complete with nothing saying so. The signal writer has always
+reported this properly; the three sidecars did not.
+
+They now go through the same path, naming the file that failed and stating that what is on disk is
+incomplete and should not be used.
+
+## 0.2.6
+
+### Fixed: two conversions into the same directory both succeeded and corrupted the output
+
+The output directory was claimed by asking whether it existed and then creating it. Between those
+two steps sat a window in which a second conversion also saw "not there" — so both proceeded, both
+opened write streams on the same `signals.csv`, and both exited 0 having written one file between
+them. Nothing reported a problem. The check that is supposed to stop a second run from mixing into
+the first only worked when the two runs did not actually overlap.
+
+The directory is now claimed with a single non-recursive `mkdir`, which the filesystem makes atomic:
+exactly one caller creates it and every other gets `EEXIST` and takes the already-exists path. With
+eight simultaneous runs, one succeeds and seven exit 1 with the usual message. Parent directories are
+still created recursively, so `--out ./a/b/c` works as before, and `--force` is unaffected.
+
 ## 0.2.5
 
 ### Fixed: dense recordings ran out of memory before writing a row

package/dist/convert/run.js

@@ -143,18 +143,46 @@ async function assertInputDoesNotOverlapOutputs(inputPath, outputDir, file, plan
     }
 }
 async function prepareOutputDir(dir, force) {
-    const existing = await stat(dir).catch(() => null);
-    // --force means "replace my previous output", not "write output files into
-    // whatever this happens to be". Pointing it at a regular file needs saying so.
-    if (existing && !existing.isDirectory()) {
-        throw new ConversionError('OUTPUT_UNWRITABLE', `"${dir}" is a file, but the converted data needs a directory.`, 'Choose a directory with --out.');
+    /*
+      Claim the directory with a single atomic mkdir rather than asking whether it exists
+      and then creating it.
+  
+      Checking first left a window between the two: two conversions started together both
+      saw "not there", both proceeded, and both opened write streams on the same signals.csv.
+      Neither reported anything — both exited 0, having half-written one file between them.
+      A non-recursive mkdir cannot do that. Exactly one caller creates the directory; every
+      other one gets EEXIST from the filesystem and takes the already-exists path below.
+  
+      Parents are still created recursively, since --out ./a/b/c should work. Only the final
+      component is the claim.
+    */
+    const parent = path.dirname(dir);
+    if (parent && parent !== dir) {
+        await mkdir(parent, { recursive: true }).catch((cause) => {
+            throw new ConversionError('OUTPUT_UNWRITABLE', `Cannot create "${dir}": ${describeFsError(cause)}.`, 'Check the path exists and that you have permission to write there.');
+        });
+    }
+    let claimed = true;
+    try {
+        await mkdir(dir);
     }
-    if (existing && !force) {
-        throw new ConversionError('OUTPUT_EXISTS', `"${dir}" already exists.`, 'Pass --force to overwrite it, or --out to choose a different directory.');
+    catch (cause) {
+        if (cause.code !== 'EEXIST') {
+            throw new ConversionError('OUTPUT_UNWRITABLE', `Cannot create "${dir}": ${describeFsError(cause)}.`, 'Check the path exists and that you have permission to write there.');
+        }
+        claimed = false;
+    }
+    if (!claimed) {
+        const existing = await stat(dir).catch(() => null);
+        // --force means "replace my previous output", not "write output files into
+        // whatever this happens to be". Pointing it at a regular file needs saying so.
+        if (existing && !existing.isDirectory()) {
+            throw new ConversionError('OUTPUT_UNWRITABLE', `"${dir}" is a file, but the converted data needs a directory.`, 'Choose a directory with --out.');
+        }
+        if (!force) {
+            throw new ConversionError('OUTPUT_EXISTS', `"${dir}" already exists.`, 'Pass --force to overwrite it, or --out to choose a different directory.');
+        }
     }
-    await mkdir(dir, { recursive: true }).catch((cause) => {
-        throw new ConversionError('OUTPUT_UNWRITABLE', `Cannot create "${dir}": ${describeFsError(cause)}.`, 'Check the path exists and that you have permission to write there.');
-    });
 }
 /** Turn a Node filesystem error into something a person can act on. */
 function describeFsError(cause) {
@@ -234,6 +262,24 @@ async function streamSignalRows(file, plan, open, recordStarts, options) {
         await entry.writer.end();
     return open.map((entry) => ({ name: entry.group.fileName, rows: entry.rows }));
 }
+/**
+ * Write one of the sidecar files, reporting a failure the way the signal writer does.
+ *
+ * These three used to call `writeFile` bare, so a failure escaped as whatever the
+ * filesystem said — `EISDIR: illegal operation on a directory, open '...'` with no hint
+ * and, more importantly, no mention that the signal files had already been written. The
+ * conversion stopped half-done and the message gave no sign of it.
+ */
+async function writeOutputFile(outputDir, name, contents) {
+    try {
+        await writeFile(path.join(outputDir, name), contents, 'utf8');
+    }
+    catch (cause) {
+        const detail = cause instanceof Error ? cause.message : String(cause);
+        throw new ConversionError('WRITE_FAILED', `Writing "${name}" to "${outputDir}" failed: ${detail}`, 'The files written so far are incomplete and should not be used. Free up space or ' +
+            'choose another destination with --out, then run the conversion again.');
+    }
+}
 async function writeChannelsCsv(outputDir, file, plan) {
     const includedColumns = new Set(plan.groups.flatMap((g) => g.channels.map((c) => c.signal.index)));
     const fileFor = new Map();
@@ -280,7 +326,7 @@ async function writeChannelsCsv(outputDir, file, plan) {
             includedColumns.has(signal.index) ? 'yes' : 'no',
         ]));
     }
-    await writeFile(path.join(outputDir, 'channels.csv'), lines.join('\n') + '\n', 'utf8');
+    await writeOutputFile(outputDir, 'channels.csv', lines.join('\n') + '\n');
     return { name: 'channels.csv', rows: lines.length - 1 };
 }
 async function writeAnnotationsCsv(outputDir, annotations, plan, windowRequested) {
@@ -310,7 +356,7 @@ async function writeAnnotationsCsv(outputDir, annotations, plan, windowRequested
             String(annotation.recordIndex),
         ]));
     }
-    await writeFile(path.join(outputDir, 'annotations.csv'), lines.join('\n') + '\n', 'utf8');
+    await writeOutputFile(outputDir, 'annotations.csv', lines.join('\n') + '\n');
     return { name: 'annotations.csv', rows: inWindow.length };
 }
 async function writeMetadata(outputDir, inputPath, file, plan, written, annotationCount, options) {
@@ -361,7 +407,7 @@ async function writeMetadata(outputDir, inputPath, file, plan, written, annotati
             message: d.message,
         })),
     };
-    await writeFile(path.join(outputDir, 'metadata.json'), JSON.stringify(metadata, null, 2) + '\n', 'utf8');
+    await writeOutputFile(outputDir, 'metadata.json', JSON.stringify(metadata, null, 2) + '\n');
 }
 async function sha256(filePath) {
     const hash = createHash('sha256');

package/dist/convert/run.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.2.5",
+  "version": "0.2.7",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",