edf2csv 0.2.34 → 0.3.0

package/CHANGELOG.md

@@ -3,6 +3,58 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
 
+## 0.3.0
+
+### Added: `--gzip`
+
+CSV is the point of this tool and also its main cost. An hour of 100 Hz EEG leaves as 168 MB of
+text. `--gzip` compresses each table as it is written:
+
+```bash
+edf2csv recording.edf --out ./converted --gzip
+```
+
+```
+converted/
+  signals.csv.gz        26 MB, from 168 MB
+  annotations.csv.gz
+  channels.csv.gz
+  metadata.json
+```
+
+Roughly six times smaller on real signal data — long runs of similar values in a fixed-width
+decimal format are close to the best case for gzip — for about a second per hundred megabytes.
+Nothing is buffered that was not buffered before: the compressor sits between the existing
+writer and the file, so memory stays flat on a recording of any size.
+
+The bytes are what an uncompressed run produces, so the usual readers need no extra step.
+`pandas.read_csv('signals.csv.gz')` infers the codec from the extension, as do R's `read.csv`
+and DuckDB's `read_csv`.
+
+`metadata.json` is deliberately left uncompressed. It is small, and it is the file you open to
+find out what a directory holds — which is a poor thing to have to decompress first.
+
+It combines with `--stdout`:
+
+```bash
+edf2csv recording.edf --stdout --gzip > signals.csv.gz
+```
+
+`--info` reports the estimate as the size before compression, and says so, because how much
+compression achieves depends on the data:
+
+```
+Would write 10,000,000 rows, roughly 160.1 MB before compression.
+```
+
+The package still declares no runtime dependencies; `zlib` ships with Node.
+
+### Fixed: a compressed run left behind by a later plain one is now reported
+
+The leftover-output check matches files by name, and did not know about `.csv.gz`. Converting
+with `--gzip` and then rerunning with `--force` and no flag left the old compressed files in
+place, unmentioned, next to the new plain ones.
+
 ## 0.2.34
 
 ### Fixed: `--info` could report a size the conversion then exceeded

package/README.md

@@ -59,6 +59,7 @@ npx edf2csv recording.edf --start 30m --duration 5m
       --annotations-only Just the EDF+ events
       --decimals <n>     Force a number of decimal places
       --checksum         Put a SHA-256 of the input in metadata.json
+      --gzip             Compress every CSV, writing .csv.gz files
   -f, --force            Overwrite the output folder
   -q, --quiet            Less output
       --json             Machine-readable JSON on stdout (works with --info too)

package/dist/cli/report.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"report.d.ts","sourceRoot":"","sources":["../../src/cli/report.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAGhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACzD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAuBvD;;;;;;;;;;;;;GAaG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAK9C;AAED,0FAA0F;AAC1F,wBAAgB,UAAU,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,cAAc,GAAG,MAAM,CA0EtE;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,QAAQ,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,cAAc,GAAG,MAAM,CAoDpE;AAED,mEAAmE;AACnE,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,SAAS,UAAU,EAAE,GAAG,MAAM,CAS5E;AAED,wBAAgB,aAAa,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,CAU3D;AAED,wBAAgB,WAAW,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,CAczD"}

package/dist/cli/report.js

@@ -97,7 +97,11 @@ export function formatInfo(file, plan) {
         lines.push(`Sampling rates differ, so channels are written to ${plan.groups.length} files, one per rate. ` +
             `No channel is resampled.`);
     }
-    lines.push(`Would write ${plan.estimate.rows.toLocaleString('en-US')} rows, roughly ${formatBytes(plan.estimate.bytes)}.`);
+    // The estimate counts the characters of the CSV, which is what --gzip then compresses.
+    // Reporting it as the size on disk would overstate a compressed conversion several-fold.
+    const compressing = plan.groups.some((group) => group.fileName.endsWith('.gz'));
+    lines.push(`Would write ${plan.estimate.rows.toLocaleString('en-US')} rows, roughly ` +
+        `${formatBytes(plan.estimate.bytes)}${compressing ? ' before compression' : ''}.`);
     return lines.join('\n');
 }
 /**
@@ -152,6 +156,7 @@ export function infoJson(file, plan) {
         })),
         estimate: {
             rows: plan.estimate.rows,
+            // Character count of the CSV. With --gzip the file on disk is smaller than this.
             bytes: plan.estimate.bytes,
             exceeds_spreadsheet_limit: plan.estimate.exceedsSpreadsheetLimit,
         },

package/dist/cli/report.js.map

@@ -1 +1 @@
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+{"version":3,"file":"report.js","sourceRoot":"","sources":["../../src/cli/report.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,EAAE,cAAc,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAChF,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAIlE,SAAS,KAAK,CAAC,IAAoC,EAAE,UAA+B;IAClF,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACjC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,GAAG,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;YACtB,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;QAClD,CAAC,CAAC,CAAC;IACL,CAAC;IACD,OAAO,IAAI;SACR,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CACX,GAAG;SACA,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;QACf,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QACxB,OAAO,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IAC/D,CAAC,CAAC;SACD,IAAI,CAAC,IAAI,CAAC;SACV,OAAO,EAAE,CACb;SACA,IAAI,CAAC,IAAI,CAAC,CAAC;AAChB,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,UAAU,SAAS,CAAC,IAAY;IACpC,4CAA4C;IAC5C,OAAO,IAAI,CAAC,OAAO,CAAC,gCAAgC,EAAE,CAAC,CAAC,EAAE,EAAE,CAC1D,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAE,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CACxD,CAAC;AACJ,CAAC;AAED,0FAA0F;AAC1F,MAAM,UAAU,UAAU,CAAC,IAAa,EAAE,IAAoB;IAC5D,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC;IACxB,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,cAAc,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;IACtC,KAAK,CAAC,IAAI,CAAC,cAAc,cAAc,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;IACnD,KAAK,CAAC,IAAI,CACR,cACE,eAAe,CAAC,MAAM,CAAC,aAAa,CAAC,EAAE,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC;QACxD,GAAG,SAAS,CAAC,MAAM,CAAC,YAAY,CAAC,IAAI,SAAS,CAAC,MAAM,CAAC,YAAY,CAAC,gBACrE,EAAE,CACH,CAAC;IACF,KAAK,CAAC,IAAI,CACR,cAAc,cAAc,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,WAAW,eAAe,MAAM,CAAC,cAAc,IAAI,CACjH,CAAC;IACF,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,mBAAmB,GAAG,IAAI,CAAC,KAAK,CAAC,qBAAqB,CAAC;IACtF,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,GAAG,IAAI,CAAC,eAAe,CAAC,GAAG,IAAI,EAAE,CAAC;QACxD,KAAK,CAAC,IAAI,CAAC,cAAc,cAAc,CAAC,WAAW,CAAC,8BAA8B,CAAC,CAAC;IACtF,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,cAAc,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;IACvD,IAAI,MAAM,CAAC,SAAS;QAAE,KAAK,CAAC,IAAI,CAAC,cAAc,SAAS,CAAC,MAAM,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC;IAC9E,IAAI,MAAM,CAAC,WAAW;QAAE,KAAK,CAAC,IAAI,CAAC,cAAc,SAAS,CAAC,MAAM,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;IAElF,MAAM,OAAO,GAAG,IAAI,CAAC,WAAW,CAAC;IACjC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,sFAAsF;IACtF,gFAAgF;IAChF,MAAM,eAAe,GAAG,IAAI,CAAC,iBAAiB,CAAC,MAAM,CAAC;IACtD,MAAM,cAAc,GAClB,eAAe,GAAG,CAAC;QACjB,CAAC,CAAC,MAAM,eAAe,sBAAsB,eAAe,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE;QAC/E,CAAC,CAAC,EAAE,CAAC;IACT,KAAK,CAAC,IAAI,CACR,cAAc,OAAO,CAAC,MAAM,UAAU,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,GAAG,cAAc,EAAE,CACzF,CAAC;IACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEf,MAAM,IAAI,GAAe,CAAC,CAAC,GAAG,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,CAAC,CAAC,CAAC;IACvF,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;QAChC,KAAK,MAAM,OAAO,IAAI,KAAK,CAAC,QAAQ;YAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC1F,CAAC;IACD,sFAAsF;IACtF,wFAAwF;IACxF,MAAM,QAAQ,GAAG,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC;IAC3E,KAAK,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,IAAI,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;QAC9C,IAAI,CAAC,IAAI,CAAC;YACR,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC;YACpB,SAAS,CAAC,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;YACnD,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC;YACvB,SAAS,CAAC,MAAM,CAAC,iBAAiB,CAAC;YACnC,GAAG,QAAQ,CAAC,GAAG,CAAC,KAAK;YACrB,GAAG,MAAM,CAAC,WAAW,OAAO,MAAM,CAAC,WAAW,EAAE;YAChD,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,gBAAgB;SAC9C,CAAC,CAAC;IACL,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAEtC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACf,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CACR,qDAAqD,IAAI,CAAC,MAAM,CAAC,MAAM,wBAAwB;YAC7F,0BAA0B,CAC7B,CAAC;IACJ,CAAC;IACD,uFAAuF;IACvF,yFAAyF;IACzF,MAAM,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC;IAChF,KAAK,CAAC,IAAI,CACR,eAAe,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,iBAAiB;QACxE,GAAG,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,WAAW,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,EAAE,GAAG,CACpF,CAAC;IAEF,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,QAAQ,CAAC,IAAa,EAAE,IAAoB;IAC1D,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC;IACxB,MAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAC1C,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;QAChC,KAAK,MAAM,OAAO,IAAI,KAAK,CAAC,QAAQ;YAAE,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC1F,CAAC;IAED,OAAO,IAAI,CAAC,SAAS,CACnB;QACE,IAAI,EAAE,IAAI,CAAC,IAAI;QACf,KAAK,EAAE,IAAI,CAAC,QAAQ;QACpB,MAAM,EAAE,cAAc,CAAC,MAAM,CAAC;QAC9B,oBAAoB,EAAE,eAAe,CAAC,MAAM,CAAC,aAAa,CAAC;QAC3D,cAAc,EAAE,MAAM,CAAC,YA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package/dist/cli.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAUH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AA8E9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAqPnE;AA2CD,OAAO,EAAE,gBAAgB,EAAE,CAAC"}
+{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../src/cli.ts"],"names":[],"mappings":";AACA;;;;;;;GAOG;AAUH,OAAO,EAA4B,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AAiF9E,wBAAsB,IAAI,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CA0PnE;AA2CD,OAAO,EAAE,gBAAgB,EAAE,CAAC"}

package/dist/cli.js

@@ -38,6 +38,7 @@ Options
       --annotations-only Write only the EDF+ annotations, no signal data
       --decimals <n>     Fix the decimal places instead of deriving them per channel
       --checksum         Record a SHA-256 of the input in metadata.json
+      --gzip             Compress every CSV, writing .csv.gz files
   -f, --force            Overwrite the output directory if it exists
   -q, --quiet            Suppress the summary; warnings and errors still print
       --json             Print machine-readable JSON to stdout (works with --info too)
@@ -51,6 +52,8 @@ Output
   A directory containing signals.csv, channels.csv, metadata.json, and
   annotations.csv when the recording carries EDF+ annotations. Channels recorded
   at different sampling rates are written to separate files, never resampled.
+  With --gzip each CSV becomes a .csv.gz; metadata.json stays plain text so the
+  directory can still be read at a glance.
 
 Examples
   edf2csv recording.edf
@@ -107,6 +110,7 @@ export async function main(argv) {
                 'annotations-only': { type: 'boolean' },
                 decimals: { type: 'string' },
                 checksum: { type: 'boolean' },
+                gzip: { type: 'boolean' },
                 force: { type: 'boolean', short: 'f' },
                 quiet: { type: 'boolean', short: 'q' },
                 json: { type: 'boolean' },
@@ -195,6 +199,9 @@ export async function main(argv) {
                     endText: typeof values['end'] === 'string' ? values['end'] : undefined,
                     decimals,
                     annotationsOnly: values['annotations-only'] === true,
+                    // --info reports the names a conversion would produce, so it needs the same
+                    // flag: with --gzip those names end in .csv.gz.
+                    gzip: values['gzip'] === true,
                 });
                 plan.diagnostics.push(...timing.diagnostics);
                 process.stdout.write(asJson ? `${infoJson(file, plan)}\n` : `${formatInfo(file, plan)}\n`);
@@ -242,6 +249,7 @@ export async function main(argv) {
             decimals,
             annotationsOnly: values['annotations-only'] === true,
             checksum: values['checksum'] === true,
+            gzip: values['gzip'] === true,
             force: values['force'] === true,
             toStdout,
             onProgress: showProgress

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/convert/plan.d.ts

@@ -49,6 +49,8 @@ export interface PlanOptions {
     annotationsOnly?: boolean | undefined;
     /** Force a fixed number of decimals instead of deriving it per channel. */
     decimals?: number | undefined;
+    /** Compress each CSV with gzip, giving every one of them a `.gz` name. */
+    gzip?: boolean | undefined;
 }
 export interface ConversionPlan {
     groups: RateGroup[];

package/dist/convert/plan.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"plan.d.ts","sourceRoot":"","sources":["../../src/convert/plan.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAMlD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAErD,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,SAAS,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,SAAS;IACxB,iEAAiE;IACjE,IAAI,EAAE,MAAM,CAAC;IACb,gBAAgB,EAAE,MAAM,CAAC;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,cAAc,EAAE,CAAC;CAC5B;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,SAAS,SAAS,EAAE,CAAC;IAC9B,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB,oBAAoB,EAAE,OAAO,CAAC;IAC9B;;;;;OAKG;IACH,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,GAAG,SAAS,CAAC;CAChD;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,EAAE,SAAS,MAAM,EAAE,GAAG,SAAS,CAAC;IACzC,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,gEAAgE;IAChE,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,GAAG,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,eAAe,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IACtC,2EAA2E;IAC3E,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC/B;AAED,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,KAAK,EAAE,aAAa,CAAC;IACrB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,YAAY,EAAE,OAAO,CAAC;IACtB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,QAAQ,EAAE,cAAc,CAAC;CAC1B;AAED,MAAM,WAAW,cAAc;IAC7B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;IACb,mDAAmD;IACnD,KAAK,EAAE,MAAM,CAAC;IACd,gEAAgE;IAChE,uBAAuB,EAAE,OAAO,CAAC;CAClC;AAED,oFAAoF;AACpF,eAAO,MAAM,qBAAqB,UAAY,CAAC;AAE/C,wBAAgB,SAAS,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,GAAE,WAAgB,GAAG,cAAc,CAgErF;AAwED,gEAAgE;AAChE,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAE7C"}
+{"version":3,"file":"plan.d.ts","sourceRoot":"","sources":["../../src/convert/plan.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAMlD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAErD,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,SAAS,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,SAAS;IACxB,iEAAiE;IACjE,IAAI,EAAE,MAAM,CAAC;IACb,gBAAgB,EAAE,MAAM,CAAC;IACzB,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,cAAc,EAAE,CAAC;CAC5B;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,SAAS,SAAS,EAAE,CAAC;IAC9B,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB,oBAAoB,EAAE,OAAO,CAAC;IAC9B;;;;;OAKG;IACH,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,GAAG,SAAS,CAAC;CAChD;AAED,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,EAAE,SAAS,MAAM,EAAE,GAAG,SAAS,CAAC;IACzC,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC3B,gEAAgE;IAChE,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,GAAG,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACzB,8DAA8D;IAC9D,OAAO,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC7B,eAAe,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IACtC,2EAA2E;IAC3E,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,0EAA0E;IAC1E,IAAI,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;CAC5B;AAED,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,SAAS,EAAE,CAAC;IACpB,KAAK,EAAE,aAAa,CAAC;IACrB,WAAW,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,YAAY,EAAE,OAAO,CAAC;IACtB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,QAAQ,EAAE,cAAc,CAAC;CAC1B;AAED,MAAM,WAAW,cAAc;IAC7B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;IACb,mDAAmD;IACnD,KAAK,EAAE,MAAM,CAAC;IACd,gEAAgE;IAChE,uBAAuB,EAAE,OAAO,CAAC;CAClC;AAED,oFAAoF;AACpF,eAAO,MAAM,qBAAqB,UAAY,CAAC;AAE/C,wBAAgB,SAAS,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,GAAE,WAAgB,GAAG,cAAc,CAkErF;AA0ED,gEAAgE;AAChE,wBAAgB,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAE7C"}

package/dist/convert/plan.js

@@ -54,7 +54,9 @@ export function buildPlan(input, options = {}) {
             });
         }
     }
-    const groups = writeSignals ? groupByRate(chosen, columnNames, options.decimals) : [];
+    const groups = writeSignals
+        ? groupByRate(chosen, columnNames, options.decimals, options.gzip === true)
+        : [];
     const estimate = estimateOutput(groups, range, input.recordDuration, input.recordStarts);
     if (estimate.exceedsSpreadsheetLimit) {
         diagnostics.push({
@@ -74,7 +76,7 @@ export function buildPlan(input, options = {}) {
  * single `signals.csv`, so the honest behaviour costs nothing when there is nothing
  * to be honest about.
  */
-function groupByRate(signals, columnNames, forcedDecimals) {
+function groupByRate(signals, columnNames, forcedDecimals, gzip) {
     const byRate = new Map();
     for (const signal of signals) {
         // A channel with no samples has no sampling rate to group by, and would
@@ -107,13 +109,14 @@ function groupByRate(signals, columnNames, forcedDecimals) {
       — two files that no longer overwrite each other, but of which only one is named for the
       rate it holds. The suffix stays as the backstop for anything this still cannot separate.
     */
+    const suffix = gzip ? '.csv.gz' : '.csv';
     const slugs = formatRates(rates).map((text) => `${text.replace('.', '_')}hz`);
     const used = new Set();
     const uniqueName = (index) => {
         const base = `signals_${slugs[index]}`;
-        let name = `${base}.csv`;
+        let name = `${base}${suffix}`;
         for (let n = 2; used.has(name); n++)
-            name = `${base}_${n}.csv`;
+            name = `${base}_${n}${suffix}`;
         used.add(name);
         return name;
     };
@@ -123,7 +126,7 @@ function groupByRate(signals, columnNames, forcedDecimals) {
         return {
             rate,
             samplesPerRecord: first ? first.samplesPerRecord : 0,
-            fileName: single ? 'signals.csv' : uniqueName(index),
+            fileName: single ? `signals${suffix}` : uniqueName(index),
             timeDecimals: timeDecimals(rate),
             channels: members.map((signal) => ({
                 signal,

package/dist/convert/plan.js.map

@@ -1 +1 @@
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package/dist/convert/run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AASH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AASD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CAyGrG;AAqDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAWH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B;;;;;;OAMG;IACH,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AAWD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA0GrG;AAsDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}

package/dist/convert/run.js

@@ -9,7 +9,8 @@ import { createWriteStream } from 'node:fs';
 import { mkdir, readdir, stat, writeFile } from 'node:fs/promises';
 import { createHash } from 'node:crypto';
 import { createReadStream } from 'node:fs';
-import { pipeline } from 'node:stream/promises';
+import { finished, pipeline } from 'node:stream/promises';
+import { createGzip, gzipSync } from 'node:zlib';
 import path from 'node:path';
 import { EdfFile } from '../edf/reader.js';
 import { describeFormat, formatWallClock } from '../edf/header.js';
@@ -87,11 +88,11 @@ export async function convert(inputPath, options = {}) {
         }
         let annotationsWritten = 0;
         if (file.annotationSignals.length > 0) {
-            const result = await writeAnnotationsCsv(outputDir, annotationData.annotations, requestedAnnotationWindow(options));
+            const result = await writeAnnotationsCsv(outputDir, annotationData.annotations, requestedAnnotationWindow(options), options.gzip === true);
             written.push(result);
             annotationsWritten = result.rows;
         }
-        written.push(await writeChannelsCsv(outputDir, file, plan));
+        written.push(await writeChannelsCsv(outputDir, file, plan, options.gzip === true));
         await writeMetadata(outputDir, inputPath, file, plan, written, annotationsWritten, options);
         const stale = await findStaleOutput(outputDir, written);
         return {
@@ -116,6 +117,7 @@ export async function convert(inputPath, options = {}) {
     signals_256hz.csv         an integer rate
     signals_12_5hz.csv        a fractional rate, decimal point written as an underscore
     signals_1_000e-7hz.csv    a rate small enough to need exponent form  (0.2.2)
+    signals_256hz.csv.gz      any of the above, compressed                (0.3.0)
     signals_0hz_2.csv         a second group whose rate slug collided    (0.2.1)
 
   The previous `[\w.]+hz` matched neither of the last two — `-` and `+` are not word
@@ -124,7 +126,7 @@ export async function convert(inputPath, options = {}) {
   leftovers of exactly those kinds went unreported: the one situation the warning exists
   for. Requiring a digit after the underscore keeps a user's own `signals_notes.csv` out.
 */
-const OUTPUT_PATTERN = /^(signals(_\d[\w.+-]*hz(_\d+)?)?\.csv|annotations\.csv|channels\.csv|metadata\.json)$/u;
+const OUTPUT_PATTERN = /^(signals(_\d[\w.+-]*hz(_\d+)?)?\.csv(\.gz)?|annotations\.csv(\.gz)?|channels\.csv(\.gz)?|metadata\.json)$/u;
 /**
  * Detect output from a previous run that this one did not replace.
  *
@@ -247,7 +249,8 @@ async function writeSignalFiles(file, plan, outputDir, recordStarts, options) {
     const open = plan.groups.map((group) => {
         // A null directory means the single table goes to stdout. process.stdout is already a
         // writable stream, so the same buffered writer and backpressure handling apply.
-        const stream = outputDir === null ? process.stdout : createWriteStream(path.join(outputDir, group.fileName));
+        const target = outputDir === null ? process.stdout : createWriteStream(path.join(outputDir, group.fileName));
+        const { stream, settled } = compressed(target, options.gzip === true);
         const writer = new BufferedLineWriter(stream);
         writer.pushLine(csvRow(['time_s', ...group.channels.map((c) => c.column)]));
         return {
@@ -255,6 +258,7 @@ async function writeSignalFiles(file, plan, outputDir, recordStarts, options) {
             writer,
             formatters: group.channels.map((c) => makeSampleFormatter(c.signal, c.decimals)),
             rows: 0,
+            settled,
         };
     });
     try {
@@ -319,10 +323,32 @@ async function streamSignalRows(file, plan, open, recordStarts, options) {
             bytesWritten: open.reduce((sum, g) => sum + g.writer.charsWritten, 0),
         });
     }
-    for (const entry of open)
+    for (const entry of open) {
         await entry.writer.end();
+        // With --gzip the writer's stream is the compressor, whose end callback fires when the
+        // compressor is done rather than when the file behind it is. Awaiting only that would
+        // report success with the tail of the file still in flight.
+        await entry.settled;
+    }
     return open.map((entry) => ({ name: entry.group.fileName, rows: entry.rows }));
 }
+/**
+ * The stream rows are written to, plus a promise for the data reaching its destination.
+ *
+ * Compression sits between the writer and the file as a transform. Failures below it — a
+ * full disk, an unwritable path — surface on the file stream, where nothing is listening,
+ * so they are forwarded onto the compressor: that is the stream the writer watches, and
+ * routing them there keeps one error path rather than two.
+ */
+function compressed(target, gzip) {
+    if (!gzip)
+        return { stream: target, settled: Promise.resolve() };
+    const compressor = createGzip();
+    target.on('error', (error) => compressor.destroy(error));
+    compressor.pipe(target);
+    // stdout is never closed by the writer, so nothing would resolve a wait on it.
+    return { stream: compressor, settled: target === process.stdout ? Promise.resolve() : finished(target) };
+}
 /**
  * Write one of the sidecar files, reporting a failure the way the signal writer does.
  *
@@ -331,9 +357,11 @@ async function streamSignalRows(file, plan, open, recordStarts, options) {
  * and, more importantly, no mention that the signal files had already been written. The
  * conversion stopped half-done and the message gave no sign of it.
  */
-async function writeOutputFile(outputDir, name, contents) {
+async function writeOutputFile(outputDir, name, contents, gzip = false) {
     try {
-        await writeFile(path.join(outputDir, name), contents, 'utf8');
+        // The sidecars are built in memory before being written, so compressing them in memory
+        // costs nothing extra. Only the signal tables are large enough to need a stream.
+        await writeFile(path.join(outputDir, name), gzip ? gzipSync(contents) : contents, gzip ? undefined : 'utf8');
     }
     catch (cause) {
         const detail = cause instanceof Error ? cause.message : String(cause);
@@ -341,7 +369,7 @@ async function writeOutputFile(outputDir, name, contents) {
             'choose another destination with --out, then run the conversion again.');
     }
 }
-async function writeChannelsCsv(outputDir, file, plan) {
+async function writeChannelsCsv(outputDir, file, plan, gzip) {
     const includedColumns = new Set(plan.groups.flatMap((g) => g.channels.map((c) => c.signal.index)));
     const fileFor = new Map();
     for (const group of plan.groups) {
@@ -387,8 +415,9 @@ async function writeChannelsCsv(outputDir, file, plan) {
             includedColumns.has(signal.index) ? 'yes' : 'no',
         ]));
     }
-    await writeOutputFile(outputDir, 'channels.csv', lines.join('\n') + '\n');
-    return { name: 'channels.csv', rows: lines.length - 1 };
+    const name = gzip ? 'channels.csv.gz' : 'channels.csv';
+    await writeOutputFile(outputDir, name, lines.join('\n') + '\n', gzip);
+    return { name, rows: lines.length - 1 };
 }
 /*
   The bounds an annotation is filtered against: what the caller actually asked for, not the
@@ -411,7 +440,7 @@ function requestedAnnotationWindow(options) {
             : Infinity;
     return { from, to };
 }
-async function writeAnnotationsCsv(outputDir, annotations, window) {
+async function writeAnnotationsCsv(outputDir, annotations, window, gzip) {
     const inWindow = annotations
         .filter((a) => a.onset >= window.from && a.onset < window.to)
         .sort((a, b) => a.onset - b.onset || a.recordIndex - b.recordIndex);
@@ -424,8 +453,9 @@ async function writeAnnotationsCsv(outputDir, annotations, window) {
             String(annotation.recordIndex),
         ]));
     }
-    await writeOutputFile(outputDir, 'annotations.csv', lines.join('\n') + '\n');
-    return { name: 'annotations.csv', rows: inWindow.length };
+    const name = gzip ? 'annotations.csv.gz' : 'annotations.csv';
+    await writeOutputFile(outputDir, name, lines.join('\n') + '\n', gzip);
+    return { name, rows: inWindow.length };
 }
 async function writeMetadata(outputDir, inputPath, file, plan, written, annotationCount, options) {
     const { header } = file;

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.2.34",
+  "version": "0.3.0",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",