edf2csv 0.2.20 → 0.2.22
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +43 -0
- package/dist/cli/report.d.ts.map +1 -1
- package/dist/cli/report.js +27 -7
- package/dist/cli/report.js.map +1 -1
- package/package.json +1 -1
package/CHANGELOG.md
CHANGED
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@@ -3,6 +3,49 @@
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Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
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major version is 0, a minor bump may contain breaking changes.
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## 0.2.22
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### One invariant now covers a whole class of bug
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A test asserts that what a run *reports* matches what is actually on disk, across every generated
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fixture in three modes: each reported row count against the real file, each `rate_groups` entry
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against the real CSV header and decimal count, and `annotations_written` against `annotations.csv`.
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Pieces of this have gone wrong before — two rate groups claiming one filename in 0.2.1, annotations
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counted but not written in 0.2.4 — and each was caught only because someone looked at that particular
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file. Checking the agreement directly means the next such disagreement fails the suite instead of
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reaching a release. 96 tests now.
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### Docs
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The `--info` reference now states that control bytes in header text are printed as escapes rather
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than sent to the terminal, and that `channels.csv` and `metadata.json` still record the field
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verbatim — the behaviour introduced in 0.2.21.
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## 0.2.21
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### Fixed: a recording's header could drive your terminal
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EDF identification fields and channel labels are free text copied verbatim out of the file, and
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`--info` printed them straight to stdout. A header carrying ANSI escapes therefore reached the
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terminal as escapes:
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```
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Patient <ESC>[31m<ESC>[2J<ESC>[H OWNED <ESC>[0m
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```
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`\x1b[2J\x1b[H` clears the screen and homes the cursor, which is enough to hide the rest of the
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output or repaint it as something else. Nobody writes an EDF header that way by accident, which is
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precisely why a file that does should not be trusted with the terminal.
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Control bytes are now shown as their escape (`\x1b[31m`) in the `--info` table, the `Patient` and
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`Recording` lines, and any warning that quotes a label — so a corrupt field stays diagnosable rather
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than being silently swallowed.
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This is display only. `channels.csv` and `metadata.json` still copy the field verbatim, as documented,
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and CSV quoting already made that safe: a label containing a carriage return was correctly quoted and
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parsed as one column all along.
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## 0.2.20
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### Improved: the `--info` size estimate is closer, and never promises less than it writes
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package/dist/cli/report.d.ts.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"report.d.ts","sourceRoot":"","sources":["../../src/cli/report.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAGhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACzD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;
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{"version":3,"file":"report.d.ts","sourceRoot":"","sources":["../../src/cli/report.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAGhD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACzD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AA4CvD,0FAA0F;AAC1F,wBAAgB,UAAU,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,cAAc,GAAG,MAAM,CAmEtE;AAED,mEAAmE;AACnE,wBAAgB,iBAAiB,CAAC,WAAW,EAAE,SAAS,UAAU,EAAE,GAAG,MAAM,CAS5E;AAED,wBAAgB,aAAa,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,CAU3D;AAED,wBAAgB,WAAW,CAAC,MAAM,EAAE,aAAa,GAAG,MAAM,CAczD"}
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package/dist/cli/report.js
CHANGED
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@@ -25,6 +25,24 @@ function table(rows, alignRight) {
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.trimEnd())
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.join('\n');
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}
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/**
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* Make header text safe to print to a terminal.
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*
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* EDF identification fields and channel labels are free text copied verbatim out of the
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* file, and `--info` puts them straight on stdout. A header carrying ANSI escapes could
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* therefore drive the reader's terminal — `\x1b[2J\x1b[H` clears the screen and homes the
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* cursor, which is enough to hide the rest of the output or repaint it as something else.
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* Nobody writes an EDF header that way on purpose, which is exactly why a file that does
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* should not be trusted with the terminal.
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*
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* Control bytes are shown as their escape instead, so a corrupt field stays diagnosable
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* rather than being silently swallowed. This affects display only: `channels.csv` and
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* `metadata.json` still copy the field verbatim, and CSV quoting already makes that safe.
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*/
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function printable(text) {
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// eslint-disable-next-line no-control-regex
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return text.replace(/[\u0000-\u001f\u007f-\u009f]/gu, (c) => `\\x${c.codePointAt(0).toString(16).padStart(2, '0')}`);
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}
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/** The `--info` view: what is in this recording, and what would converting it produce. */
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export function formatInfo(file, plan) {
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const { header } = file;
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@@ -40,9 +58,9 @@ export function formatInfo(file, plan) {
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}
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lines.push(`Size ${formatBytes(file.fileSize)}`);
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if (header.patientId)
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lines.push(`Patient ${header.patientId}`);
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lines.push(`Patient ${printable(header.patientId)}`);
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if (header.recordingId)
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lines.push(`Recording ${header.recordingId}`);
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lines.push(`Recording ${printable(header.recordingId)}`);
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const signals = file.dataSignals;
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lines.push('');
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// The signal count was pluralised but the annotation-channel count was not, so a file
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@@ -62,9 +80,9 @@ export function formatInfo(file, plan) {
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for (const signal of signals) {
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rows.push([
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String(signal.index),
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plan.columnNames.get(signal.index) ?? '',
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signal.label,
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signal.physicalDimension,
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printable(plan.columnNames.get(signal.index) ?? ''),
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printable(signal.label),
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printable(signal.physicalDimension),
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`${formatRate(signal.samplingRate)} Hz`,
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`${signal.physicalMin} to ${signal.physicalMax}`,
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fileFor.get(signal.index) ?? '(not selected)',
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export function formatDiagnostics(diagnostics) {
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return diagnostics
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.map((d) => {
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-
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// Diagnostics quote channel labels, which come from the file, so they need the
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// same treatment as the --info table.
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const head = `${d.severity === 'warning' ? 'warning' : 'note'}: ${printable(d.message)}`;
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return d.hint ? `${head}\n ${printable(d.hint)}` : head;
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})
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.join('\n');
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}
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package/dist/cli/report.js.map
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{"version":3,"file":"report.js","sourceRoot":"","sources":["../../src/cli/report.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAC/E,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAIlE,SAAS,KAAK,CAAC,IAAoC,EAAE,UAA+B;IAClF,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACjC,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;QACvB,GAAG,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;YACtB,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;QAClD,CAAC,CAAC,CAAC;IACL,CAAC;IACD,OAAO,IAAI;SACR,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CACX,GAAG;SACA,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE;QACf,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QACxB,OAAO,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IAC/D,CAAC,CAAC;SACD,IAAI,CAAC,IAAI,CAAC;SACV,OAAO,EAAE,CACb;SACA,IAAI,CAAC,IAAI,CAAC,CAAC;AAChB,CAAC;AAED,0FAA0F;AAC1F,MAAM,UAAU,UAAU,CAAC,IAAa,EAAE,IAAoB;IAC5D,MAAM,EAAE,MAAM,EAAE,GAAG,IAAI,CAAC;IACxB,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,KAAK,CAAC,IAAI,CAAC,cAAc,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;IACtC,KAAK,CAAC,IAAI,CAAC,cAAc,cAAc,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;IACnD,KAAK,CAAC,IAAI,CACR,cACE,eAAe,CAAC,MAAM,CAAC,aAAa,CAAC,EAAE,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC;QACxD,GAAG,MAAM,CAAC,YAAY,IAAI,MAAM,CAAC,YAAY,gBAC/C,EAAE,CACH,CAAC;IACF,KAAK,CAAC,IAAI,CACR,cAAc,cAAc,CAAC,IAAI,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,WAAW,eAAe,MAAM,CAAC,cAAc,IAAI,CACjH,CAAC;IACF,MAAM,WAAW,GAAG,IAAI,CAAC,KAAK,CAAC,mBAAmB,GAAG,IAAI,CAAC,KAAK,CAAC,qBAAqB,CAAC;IACtF,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,GAAG,IAAI,CAAC,eAAe,CAAC,GAAG,IAAI,EAAE,CAAC;QACxD,KAAK,CAAC,IAAI,CAAC,cAAc,cAAc,CAAC,WAAW,CAAC,8BAA8B,CAAC,CAAC;IACtF,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,cAAc,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;IACvD,IAAI,MAAM,CAAC,SAAS;QAAE,KAAK,CAAC,IAAI,CAAC,cAAc,MAAM,CAAC,SAAS,EAAE,CAAC,CAAC;
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+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
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|
|
1
1
|
{
|
|
2
2
|
"name": "edf2csv",
|
|
3
|
-
"version": "0.2.
|
|
3
|
+
"version": "0.2.22",
|
|
4
4
|
"description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"edf",
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