npm - edf2csv - Versions diffs - 0.2.14 → 0.2.16 - Mend

edf2csv 0.2.14 → 0.2.16

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (14) hide show

package/CHANGELOG.md CHANGED Viewed

@@ -3,6 +3,44 @@
 Notable changes to edf2csv. Versions follow [semantic versioning](https://semver.org); while the
 major version is 0, a minor bump may contain breaking changes.
+## 0.2.16
+### Fixed: leftover output went unreported for two of the filename shapes this tool produces
+`STALE_OUTPUT` warns when files from an earlier conversion are still sitting in the output directory
+that this run did not rewrite — the guard against two runs being mistaken for one. It decides what
+counts as its own output by matching filenames, and that pattern had fallen behind two recent
+changes:
+| filename | added in | recognised before |
+| --- | --- | --- |
+| `signals_256hz.csv` | — | yes |
+| `signals_12_5hz.csv` | — | yes |
+| `signals_0hz_2.csv` | 0.2.1 collision suffix | **no** |
+| `signals_1_000e-7hz.csv` | 0.2.2 exponent rates | **no** |
+`-` is not a word character and the collision suffix falls after the `hz`, so both fell outside
+`[\w.]+hz`. Leftovers of exactly those two kinds — the ones produced by unusual recordings, where
+mixing two runs together is hardest to notice — were the ones that went unreported.
+The pattern now covers every shape the tool can produce, including a suffixed exponent rate. It still
+requires a digit after the underscore, so a file of your own named `signals_notes.csv` is left alone.
+## 0.2.15
+### Fixed: a physical range too wide to represent was converted silently
+EDF's physical range fields are eight ASCII characters and accept exponent form, so a header may
+declare `-1e308` to `1e308`. The span of that range overflows a double, leaving no gain to compute —
+but the scaler treated a non-finite gain the same as a flat one and returned the physical minimum,
+so every distinct sample in the channel came out as the same 300-digit constant. No diagnostic was
+raised, in `--info` or in `metadata.json`.
+This is the same undefined-mapping case as `digitalMin === digitalMax`, and it now behaves the same
+way: the cells are left empty and a new `UNUSABLE_PHYSICAL_RANGE` warning names the channel. A
+genuinely flat range (`physicalMin === physicalMax`) is still a defined mapping and still writes its
+constant.
 ## 0.2.14
 ### Changed: a repeated unit in a time value is now an error

package/dist/convert/run.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AASH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AASD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA8ErG;~~AAqCD~~,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}
1	+ {"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/convert/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AASH,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAE3C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAMnD,OAAO,KAAK,EAAE,cAAc,EAAE,WAAW,EAAa,MAAM,WAAW,CAAC;AAGxE,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,MAAM,mBAAmB,GAC3B,eAAe,GACf,mBAAmB,GACnB,wBAAwB,GACxB,cAAc,CAAC;AAEnB,qBAAa,eAAgB,SAAQ,KAAK;IACxC,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,CAAC;gBACtB,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM;CAMtE;AAED,MAAM,WAAW,cAAe,SAAQ,WAAW;IACjD,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC/B,8CAA8C;IAC9C,KAAK,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC5B,wFAAwF;IACxF,QAAQ,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;IAC/B,UAAU,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,kBAAkB,KAAK,IAAI,CAAC,GAAG,SAAS,CAAC;CACnE;AAED,MAAM,WAAW,kBAAkB;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,YAAY,EAAE,MAAM,CAAC;IACrB,YAAY,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,WAAW,EAAE,CAAC;IACrB,eAAe,EAAE,MAAM,CAAC;IACxB,WAAW,EAAE,UAAU,EAAE,CAAC;IAC1B,IAAI,EAAE,cAAc,CAAC;IACrB,IAAI,EAAE,OAAO,CAAC;IACd,SAAS,EAAE,MAAM,CAAC;CACnB;AASD,wBAAsB,OAAO,CAAC,SAAS,EAAE,MAAM,EAAE,OAAO,GAAE,cAAmB,GAAG,OAAO,CAAC,aAAa,CAAC,CA8ErG;AAqDD,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAG1D"}

package/dist/convert/run.js CHANGED Viewed

@@ -89,8 +89,23 @@ export async function convert(inputPath, options = {}) {
         await file.close();
     }
 }
-/** Files this tool produces, used to spot leftovers from an earlier conversion. */
-const OUTPUT_PATTERN = /^(signals(_[\w.]+hz)?\.csv|annotations\.csv|channels\.csv|metadata\.json)$/u;
+/*
+  Files this tool produces, used to spot leftovers from an earlier conversion.
+  The rate part has to allow every shape a filename can now take, not just the plain ones:
+    signals_256hz.csv         an integer rate
+    signals_12_5hz.csv        a fractional rate, decimal point written as an underscore
+    signals_1_000e-7hz.csv    a rate small enough to need exponent form  (0.2.2)
+    signals_0hz_2.csv         a second group whose rate slug collided    (0.2.1)
+  The previous `[\w.]+hz` matched neither of the last two — `-` and `+` are not word
+  characters, and the collision suffix falls after the `hz`. Both were introduced by
+  recent changes and both silently stopped being recognised as this tool's own output, so
+  leftovers of exactly those kinds went unreported: the one situation the warning exists
+  for. Requiring a digit after the underscore keeps a user's own `signals_notes.csv` out.
+*/
+const OUTPUT_PATTERN = /^(signals(_\d[\w.+-]*hz(_\d+)?)?\.csv|annotations\.csv|channels\.csv|metadata\.json)$/u;
 /**
  * Detect output from a previous run that this one did not replace.
  *

package/dist/convert/run.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/edf/errors.d.ts CHANGED Viewed

@@ -6,7 +6,7 @@
  * we can continue, but the user needs to know something about their data that
  * they would not otherwise see.
  */
-export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
+export type DiagnosticCode = 'MIXED_SAMPLING_RATES' | 'DISCONTINUOUS' | 'RECORD_COUNT_UNKNOWN' | 'RECORD_COUNT_MISMATCH' | 'TRAILING_BYTES' | 'DEGENERATE_DIGITAL_RANGE' | 'DEGENERATE_PHYSICAL_RANGE' | 'UNUSABLE_PHYSICAL_RANGE' | 'INVERTED_PHYSICAL_RANGE' | 'DUPLICATE_LABEL' | 'EMPTY_LABEL' | 'NONSTANDARD_UNIT' | 'NO_ANNOTATIONS' | 'ANNOTATION_DECODE_FAILED' | 'COMMA_DECIMAL' | 'LARGE_OUTPUT' | 'NO_SIGNAL_CHANNELS' | 'NO_SAMPLES' | 'STALE_OUTPUT' | 'HEADER_BYTES_MISMATCH' | 'NONPRINTABLE_LABEL';
 export interface Diagnostic {
     code: DiagnosticCode;
     severity: 'warning' | 'info';

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	@@ -1 +1 @@
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package/dist/edf/header.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/edf/header.js CHANGED Viewed

@@ -216,7 +216,16 @@ export function parseHeader(buf, fileSize) {
                     hint: 'It is described in channels.csv but left out of the converted data.',
                 });
             }
-            if (digitalMax === digitalMin) {
+            if (!Number.isFinite(physicalMax - physicalMin)) {
+                diagnostics.push({
+                    code: 'UNUSABLE_PHYSICAL_RANGE',
+                    severity: 'warning',
+                    message: `Signal ${i} ("${label}") declares a physical range from ${physicalMin} to ` +
+                        `${physicalMax}, whose span is too large to represent, so its values cannot be scaled.`,
+                    hint: 'Its cells are left empty rather than filled with a value the header cannot justify.',
+                });
+            }
+            else if (digitalMax === digitalMin) {
                 diagnostics.push({
                     code: 'DEGENERATE_DIGITAL_RANGE',
                     severity: 'warning',

package/dist/edf/header.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/edf/scale.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"scale.d.ts","sourceRoot":"","sources":["../../src/edf/scale.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAE7C,MAAM,MAAM,MAAM,GAAG,CAAC,OAAO,EAAE,MAAM,KAAK,MAAM,CAAC;AAEjD,wBAAgB,UAAU,CAAC,MAAM,EAAE,SAAS,GAAG,MAAM,CAqCpD;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,GAAG,MAAM,CAI1D;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,SAAS,EAAE,GAAG,SAAK,GAAG,MAAM,CAKrE"}

package/dist/edf/scale.js CHANGED Viewed

@@ -38,9 +38,16 @@ export function makeScaler(signal) {
         return () => NaN;
     const gain = (physicalMax - physicalMin) / (digitalMax - digitalMin);
     // A flat physical range makes every sample the same value, and would divide by
-    // zero in the offset below.
-    if (gain === 0 || !Number.isFinite(gain))
+    // zero in the offset below. That mapping is defined, so its constant is written.
+    if (gain === 0)
         return () => physicalMin;
+    // A non-finite gain is a different thing: the physical span overflowed a double, so
+    // there is no mapping at all. Returning physicalMin filled the column with one enormous
+    // constant — every distinct sample rendered as the same 300-digit number — and raised
+    // nothing. NaN takes the same route as a degenerate digital range: empty cells, plus
+    // UNUSABLE_PHYSICAL_RANGE from the header parser.
+    if (!Number.isFinite(gain))
+        return () => NaN;
     // Deriving the offset divides by the gain. For every realistic calibration that is
     // both safe and more accurate, but an absurd header (a huge physical range over a
     // near-zero gain) could overflow it, so fall back to the specification's own

package/dist/edf/scale.js.map CHANGED Viewed

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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "edf2csv",
-  "version": "0.2.14",
+  "version": "0.2.16",
   "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
   "keywords": [
     "edf",