edf2csv 0.1.0

package/dist/format/number.js

@@ -0,0 +1,108 @@
+/**
+ * Number formatting for CSV cells.
+ *
+ * A one-hour, 23-channel, 256 Hz recording is about 21 million numeric cells, so
+ * this is the hottest code in a conversion. Two things keep it cheap:
+ *
+ *  - Every sample in a channel comes from a bounded set of integers (digitalMin to
+ *    digitalMax, typically 4096 distinct values for a 12-bit ADC). The formatted
+ *    text for a digital code never changes, so it is computed once and reused.
+ *  - The cache fills lazily. Real recordings visit only a fraction of the range,
+ *    and a channel with an implausibly wide range falls back to direct formatting
+ *    rather than reserving memory it will never use.
+ */
+import { makeScaler } from '../edf/scale.js';
+/** Widest digital range worth caching: 16 bits of pointers is 512 KB per channel. */
+const MAX_CACHED_SPAN = 1 << 16;
+/**
+ * Format with a fixed number of decimals, normalising negative zero.
+ *
+ * Without this, a sample that scales to a very small negative value prints as
+ * "-0.000", which looks like a distinct measurement but is not.
+ */
+export function fixed(value, decimals) {
+    const text = value.toFixed(decimals);
+    if (text.charCodeAt(0) !== 45 /* - */)
+        return text;
+    // Cheap check for "-0", "-0.0", "-0.000"...
+    for (let i = 1; i < text.length; i++) {
+        const c = text.charCodeAt(i);
+        if (c === 46 /* . */ || c === 48 /* 0 */)
+            continue;
+        return text;
+    }
+    return text.slice(1);
+}
+export function makeSampleFormatter(signal, decimals) {
+    const scale = makeScaler(signal);
+    const low = Math.min(signal.digitalMin, signal.digitalMax);
+    const high = Math.max(signal.digitalMin, signal.digitalMax);
+    const span = high - low + 1;
+    // Samples may fall outside the declared digital range in non-conforming files,
+    // so the cache covers the full int16 domain when the declared range is small.
+    if (!Number.isFinite(span) || span <= 0 || span > MAX_CACHED_SPAN) {
+        return (digital) => fixed(scale(digital), decimals);
+    }
+    const cacheLow = -32768;
+    const cache = new Array(65536);
+    return (digital) => {
+        const slot = digital - cacheLow;
+        if (slot >= 0 && slot < 65536) {
+            const hit = cache[slot];
+            if (hit !== undefined)
+                return hit;
+            const text = fixed(scale(digital), decimals);
+            cache[slot] = text;
+            return text;
+        }
+        return fixed(scale(digital), decimals);
+    };
+}
+/**
+ * Decimals for the time column.
+ *
+ * The interval between samples is 1/rate, which has a terminating decimal
+ * expansion of d places exactly when 10^d divides evenly by the rate. Every rate
+ * in common use clears this — 256 Hz needs 8 places, 512 Hz needs 9, 250 Hz and
+ * 1000 Hz need 3 — so sample times are written exactly rather than rounded, and
+ * `time_s * rate` comes back as a whole number instead of 8191.999999.
+ *
+ * Rates with a repeating expansion (3 Hz, say) fall back to enough places to keep
+ * consecutive samples distinct.
+ */
+export function timeDecimals(samplingRate) {
+    if (!(samplingRate > 0) || !Number.isFinite(samplingRate))
+        return 3;
+    for (let d = 0; d <= 9; d++) {
+        if (Number.isInteger(10 ** d / samplingRate))
+            return Math.max(3, d);
+    }
+    return Math.min(9, Math.max(3, Math.ceil(Math.log10(samplingRate)) + 3));
+}
+/** Human-readable byte size for warnings and summaries. */
+export function formatBytes(bytes) {
+    const units = ['B', 'KB', 'MB', 'GB', 'TB'];
+    let value = bytes;
+    let unit = 0;
+    while (value >= 1024 && unit < units.length - 1) {
+        value /= 1024;
+        unit++;
+    }
+    const rounded = value >= 100 || unit === 0 ? Math.round(value) : Number(value.toFixed(1));
+    return `${rounded} ${units[unit]}`;
+}
+/** Human-readable duration: 1h 05m 12s. */
+export function formatDuration(seconds) {
+    if (!Number.isFinite(seconds) || seconds < 0)
+        return `${seconds}s`;
+    const h = Math.floor(seconds / 3600);
+    const m = Math.floor((seconds % 3600) / 60);
+    const s = seconds - h * 3600 - m * 60;
+    const sText = Number.isInteger(s) ? String(s) : s.toFixed(3).replace(/\.?0+$/u, '');
+    if (h > 0)
+        return `${h}h ${String(m).padStart(2, '0')}m ${sText}s`;
+    if (m > 0)
+        return `${m}m ${sText}s`;
+    return `${sText}s`;
+}
+//# sourceMappingURL=number.js.map

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package/dist/index.d.ts

@@ -0,0 +1,25 @@
+/**
+ * Programmatic API.
+ *
+ * edf2csv is primarily a command-line tool, but the parser underneath is useful on
+ * its own — reading an EDF header, listing channels, or streaming raw samples
+ * without going through CSV at all.
+ */
+export { EdfFile, DEFAULT_CHUNK_BYTES } from './edf/reader.js';
+export type { RecordBatch, ReadRecordsOptions } from './edf/reader.js';
+export { parseHeader, formatRate, describeFormat, formatWallClock, ANNOTATIONS_LABEL, BDF_ANNOTATIONS_LABEL } from './edf/header.js';
+export type { EdfHeader, EdfHeaderInfo, EdfSignal } from './edf/header.js';
+export { decodeRecordAnnotations } from './edf/annotations.js';
+export type { Annotation, DecodedRecordAnnotations } from './edf/annotations.js';
+export { makeScaler, quantizationStep, decimalsForSignal } from './edf/scale.js';
+export type { Scaler } from './edf/scale.js';
+export { EdfError } from './edf/errors.js';
+export type { Diagnostic, DiagnosticCode, EdfErrorCode } from './edf/errors.js';
+export { convert, defaultOutputDir, ConversionError, TOOL_VERSION } from './convert/run.js';
+export type { ConvertOptions, ConvertResult, ConversionProgress, WrittenFile } from './convert/run.js';
+export { buildPlan, rateSlug, SPREADSHEET_ROW_LIMIT } from './convert/plan.js';
+export type { ConversionPlan, PlanOptions, PlanInput, RateGroup, PlannedChannel } from './convert/plan.js';
+export { selectChannels, buildColumnNames, ChannelSelectionError } from './convert/channels.js';
+export { parseTimeSpec, resolveRange, TimeRangeError } from './convert/time-range.js';
+export type { ResolvedRange } from './convert/time-range.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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package/dist/index.js

@@ -0,0 +1,17 @@
+/**
+ * Programmatic API.
+ *
+ * edf2csv is primarily a command-line tool, but the parser underneath is useful on
+ * its own — reading an EDF header, listing channels, or streaming raw samples
+ * without going through CSV at all.
+ */
+export { EdfFile, DEFAULT_CHUNK_BYTES } from './edf/reader.js';
+export { parseHeader, formatRate, describeFormat, formatWallClock, ANNOTATIONS_LABEL, BDF_ANNOTATIONS_LABEL } from './edf/header.js';
+export { decodeRecordAnnotations } from './edf/annotations.js';
+export { makeScaler, quantizationStep, decimalsForSignal } from './edf/scale.js';
+export { EdfError } from './edf/errors.js';
+export { convert, defaultOutputDir, ConversionError, TOOL_VERSION } from './convert/run.js';
+export { buildPlan, rateSlug, SPREADSHEET_ROW_LIMIT } from './convert/plan.js';
+export { selectChannels, buildColumnNames, ChannelSelectionError } from './convert/channels.js';
+export { parseTimeSpec, resolveRange, TimeRangeError } from './convert/time-range.js';
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/version.d.ts

@@ -0,0 +1,3 @@
+/** The package version reported by the CLI and written into conversion metadata. */
+export declare const VERSION: string;
+//# sourceMappingURL=version.d.ts.map

package/dist/version.d.ts.map

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package/dist/version.js

@@ -0,0 +1,8 @@
+import { readFileSync } from 'node:fs';
+const metadata = JSON.parse(readFileSync(new URL('../package.json', import.meta.url), 'utf8'));
+if (typeof metadata.version !== 'string' || metadata.version.length === 0) {
+    throw new Error('package.json does not contain a valid version.');
+}
+/** The package version reported by the CLI and written into conversion metadata. */
+export const VERSION = metadata.version;
+//# sourceMappingURL=version.js.map

package/dist/version.js.map

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package/package.json

@@ -0,0 +1,73 @@
+{
+  "name": "edf2csv",
+  "version": "0.1.0",
+  "description": "Convert EDF, EDF+ and BDF biosignal recordings (European Data Format) to CSV from the command line. Local, streaming, and never resamples or alters units.",
+  "keywords": [
+    "edf",
+    "edf+",
+    "bdf",
+    "european data format",
+    "edf to csv",
+    "csv",
+    "converter",
+    "eeg",
+    "ecg",
+    "emg",
+    "eog",
+    "biosignal",
+    "physiological signals",
+    "polysomnography",
+    "sleep study",
+    "neuroscience",
+    "cli",
+    "biosemi"
+  ],
+  "license": "MIT",
+  "author": "Sarthak Tayal",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/tayal-sarthak/edf2csv.git"
+  },
+  "bugs": {
+    "url": "https://github.com/tayal-sarthak/edf2csv/issues"
+  },
+  "homepage": "https://edf2csv.vercel.app",
+  "type": "module",
+  "bin": {
+    "edf2csv": "dist/cli.js"
+  },
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./dist/index.d.ts",
+      "default": "./dist/index.js"
+    },
+    "./package.json": "./package.json"
+  },
+  "files": [
+    "dist",
+    "README.md",
+    "LICENSE"
+  ],
+  "engines": {
+    "node": ">=20.0.0"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "clean": "node -e \"fs.rmSync('dist',{recursive:true,force:true})\"",
+    "fixtures": "node test/fixtures/generate.mjs",
+    "test": "npm run build && npm run fixtures && node --test test/*.test.js",
+    "typecheck": "tsc -p tsconfig.json --noEmit",
+    "prepublishOnly": "npm run clean && npm run build && npm test"
+  },
+  "dependencies": {
+    "@types/node": "^22.10.0"
+  },
+  "devDependencies": {
+    "typescript": "^5.7.0"
+  },
+  "publishConfig": {
+    "access": "public"
+  }
+}