dsh-code-review-graph 0.0.0-stage → 0.1.0

package/dist/index.js

@@ -0,0 +1,511 @@
+// src/index.ts
+import z from "@deepseek-ai/schemastery";
+import { Ajv } from "ajv";
+import { readFile, readdir as readdir2, stat as stat2 } from "node:fs/promises";
+import { join as join2, basename as basename2 } from "node:path";
+import { homedir } from "node:os";
+
+// src/backend.ts
+import { Client } from "@modelcontextprotocol/sdk/client/index.js";
+import { StdioClientTransport } from "@modelcontextprotocol/sdk/client/stdio.js";
+import { spawn } from "node:child_process";
+
+// src/safety.ts
+import { realpath, stat, lstat, readdir } from "node:fs/promises";
+import { isAbsolute, relative, resolve, sep, dirname, basename, join } from "node:path";
+import { createHash } from "node:crypto";
+var sha256 = (bytes) => createHash("sha256").update(bytes).digest("hex");
+function contained(root, path) {
+  const part = relative(root, path);
+  return part === "" || !isAbsolute(part) && part !== ".." && !part.startsWith(`..${sep}`);
+}
+async function checkedPath(root, value, allowMissing = false) {
+  const candidate = resolve(root, value);
+  if (!contained(root, candidate)) throw new Error("Path is outside the authorized repository");
+  let current = candidate;
+  const suffix = [];
+  while (allowMissing && !await lstat(current).then(() => true, () => false)) {
+    suffix.unshift(basename(current));
+    current = dirname(current);
+  }
+  const canonical = join(await realpath(current), ...suffix);
+  if (!contained(root, canonical)) throw new Error("Symlink escapes the authorized repository");
+  return canonical;
+}
+async function repository(cwd) {
+  if (!cwd || !isAbsolute(cwd)) throw new Error("This session has no local absolute workspace");
+  const root = await realpath(cwd);
+  if (!(await stat(root)).isDirectory()) throw new Error("Workspace is not a directory");
+  for (const marker of [".git", ".svn"]) {
+    if (await stat(resolve(root, marker)).then(() => true, () => false)) return root;
+  }
+  throw new Error("Select a Git or SVN repository before using the graph");
+}
+function scrubEnv(env) {
+  return { ...Object.fromEntries(Object.entries(env).filter(([key, value]) => value !== void 0 && !/KEY|PASSWORD|SECRET|TOKEN|^(DSH|CRG|OPENAI|GOOGLE|GEMINI|MINIMAX|VOYAGE|HF)_/i.test(key))), HF_HUB_OFFLINE: "1", TRANSFORMERS_OFFLINE: "1", HF_HUB_DISABLE_TELEMETRY: "1" };
+}
+async function checkedData(root) {
+  const dir = resolve(root, ".code-review-graph");
+  if (!await lstat(dir).then(() => true, () => false)) return;
+  await checkedPath(root, dir);
+  const entries = await readdir(dir, { withFileTypes: true, recursive: true });
+  for (const entry of entries) {
+    if (entry.isSymbolicLink()) await checkedPath(root, join(entry.parentPath, entry.name));
+  }
+}
+
+// src/backend.ts
+var environment = (engine) => ({ ...scrubEnv(process.env), ...engine.env });
+function valueOf(result) {
+  const r = result;
+  const text = r.content?.filter((x) => x.type === "text").map((x) => x.text).join("\n") ?? "";
+  if (r.isError) throw new Error(text || "Engine tool failed");
+  const value = r.structuredContent ?? (() => {
+    try {
+      return JSON.parse(text);
+    } catch {
+      return { text };
+    }
+  })();
+  if (value.status === "error") throw new Error(String(value.error));
+  return value;
+}
+async function connect(engine, cwd) {
+  await checkedData(cwd);
+  const transport = new StdioClientTransport({ command: engine.command, args: [...engine.args, "serve", "--repo", cwd], cwd, env: environment(engine), stderr: "pipe" });
+  transport.stderr?.on("data", () => {
+  });
+  const client = new Client({ name: "dsh-code-review-graph", version: "0.1.0" });
+  try {
+    await client.connect(transport);
+    return client;
+  } catch (error) {
+    await transport.close();
+    throw new Error(`CRG engine unavailable. Run dsh-crg prepare explicitly. ${String(error)}`);
+  }
+}
+async function stop(child) {
+  if (!child || child.exitCode !== null || child.signalCode !== null) return;
+  await new Promise((resolve2) => {
+    const timer = setTimeout(() => {
+      child.kill("SIGKILL");
+      resolve2();
+    }, 3e3);
+    child.once("exit", () => {
+      clearTimeout(timer);
+      resolve2();
+    });
+    child.kill();
+  });
+}
+var BackendPool = class {
+  constructor(engine) {
+    this.engine = engine;
+  }
+  entries = /* @__PURE__ */ new Map();
+  retired = /* @__PURE__ */ new Set();
+  closed = false;
+  activate(owner) {
+    this.retired.delete(owner);
+  }
+  async acquire(root, owner) {
+    if (this.closed || this.retired.has(owner)) throw new Error("Session has been released");
+    let promise = this.entries.get(root);
+    if (!promise) {
+      promise = connect(this.engine, root).then((client) => ({ client, owners: /* @__PURE__ */ new Set(), queue: Promise.resolve() }));
+      this.entries.set(root, promise);
+      promise.catch(() => {
+        if (this.entries.get(root) === promise) this.entries.delete(root);
+      });
+    }
+    const entry = await promise;
+    if (this.closed || this.retired.has(owner)) throw new Error("Session has been released");
+    entry.owners.add(owner);
+    return entry;
+  }
+  async call(root, owner, name2, args, signal) {
+    const entry = await this.acquire(root, owner);
+    const work = entry.queue.catch(() => {
+    }).then(async () => {
+      signal.throwIfAborted();
+      const cancel = () => {
+        this.entries.delete(root);
+        void stop(entry.watcher);
+        void entry.client.close();
+      };
+      signal.addEventListener("abort", cancel, { once: true });
+      let result;
+      try {
+        await checkedData(root);
+        if (entry.watchError) throw new Error(`Incremental watcher stopped: ${entry.watchError}`);
+        result = await entry.client.callTool({ name: name2, arguments: args }, void 0, { signal, timeout: this.engine.timeoutMs });
+      } catch (error) {
+        this.entries.delete(root);
+        await stop(entry.watcher);
+        await entry.client.close();
+        throw error;
+      } finally {
+        signal.removeEventListener("abort", cancel);
+      }
+      valueOf(result);
+      return result;
+    });
+    entry.queue = work;
+    return work;
+  }
+  async ensure(root, owner, signal) {
+    const entry = await this.acquire(root, owner);
+    entry.ready ??= (async () => {
+      const update = valueOf(await this.call(root, owner, "build_or_update_graph_tool", { repo_root: root }, signal));
+      if (update.status === "partial" || Array.isArray(update.warnings) && update.warnings.length) entry.update = update;
+      signal.throwIfAborted();
+      const watcher = spawn(this.engine.command, [...this.engine.args, "watch", "--repo", root], { cwd: root, env: environment(this.engine), stdio: "ignore", windowsHide: true });
+      entry.watcher = watcher;
+      await new Promise((resolve2, reject) => {
+        watcher.once("spawn", resolve2);
+        watcher.once("error", reject);
+      });
+      watcher.on("error", (error) => {
+        entry.watchError = String(error);
+      });
+      watcher.on("exit", (code, reason) => {
+        if (entry.watcher === watcher) entry.watchError = `exit ${code ?? reason}`;
+      });
+    })().catch((error) => {
+      entry.ready = void 0;
+      throw error;
+    });
+    await entry.ready;
+    if (entry.watchError) throw new Error(`Incremental watcher stopped: ${entry.watchError}`);
+    return entry.update;
+  }
+  async release(owner) {
+    this.retired.add(owner);
+    for (const [root, promise] of this.entries) {
+      const entry = await promise.catch(() => void 0);
+      if (!entry) continue;
+      entry.owners.delete(owner);
+      if (!entry.owners.size) {
+        this.entries.delete(root);
+        const watcher = entry.watcher;
+        entry.watcher = void 0;
+        await stop(watcher);
+        await entry.client.close();
+      }
+    }
+  }
+  async dispose() {
+    this.closed = true;
+    const entries = [...this.entries.values()];
+    this.entries.clear();
+    for (const promise of entries) {
+      const entry = await promise.catch(() => void 0);
+      if (entry) {
+        const watcher = entry.watcher;
+        entry.watcher = void 0;
+        await stop(watcher);
+        await entry.client.close();
+      }
+    }
+  }
+};
+async function run(engine, args, cwd, signal) {
+  await checkedData(cwd);
+  signal = AbortSignal.any([signal, AbortSignal.timeout(engine.timeoutMs)]);
+  return new Promise((resolve2, reject) => {
+    let log = "";
+    const child = spawn(engine.command, [...engine.args, ...args], { cwd, env: environment(engine), stdio: ["ignore", "pipe", "pipe"], windowsHide: true, signal });
+    const capture = (bytes) => {
+      log = (log + bytes.toString()).slice(-16e3);
+    };
+    child.stdout?.on("data", capture);
+    child.stderr?.on("data", capture);
+    child.on("error", reject);
+    child.on("exit", (code) => code === 0 ? resolve2({ log }) : reject(new Error(`Engine command exited ${code}: ${log}`)));
+  });
+}
+
+// src/refactor.ts
+async function commitPlan(ctx, exec, root, plan) {
+  if (!exec.agent) throw new Error("Refactor requires a session-owned agent");
+  const policy = ctx.sandboxPolicy.resolve({ session: exec.agent.session });
+  if (policy.mode === "read-only") throw new Error("Refactor is denied by read-only policy");
+  if (!Array.isArray(plan.files)) throw new Error("Invalid edit plan");
+  const prepared = [];
+  const seen = /* @__PURE__ */ new Set();
+  for (const file of plan.files) {
+    if (typeof file.path !== "string" || !/^[a-f0-9]{64}$/.test(file.before_sha256) || typeof file.after_content !== "string" || !Number.isInteger(file.edit_count) || file.edit_count < 0) throw new Error("Invalid edit plan file");
+    exec.signal.throwIfAborted();
+    const path = await checkedPath(root, file.path);
+    if (seen.has(path)) throw new Error("Duplicate edit target");
+    seen.add(path);
+    const target = await ctx.fs.resolve(path, { cwd: root, signal: exec.signal });
+    const before = await ctx.fs.stat(target, exec.signal);
+    if (!before || before.type !== "file") throw new Error("Edit target is not a regular file");
+    const bytes = await ctx.fs.readBytes(target, exec.signal, 32 * 1024 * 1024);
+    if (sha256(bytes) !== file.before_sha256) throw new Error(`Stale edit plan: ${path}`);
+    const after = await ctx.fs.stat(target, exec.signal);
+    if (after?.version !== before.version) throw new Error(`File changed during preflight: ${path}`);
+    const intent = await ctx.waterfall("fs/write-intent", target, exec, () => void 0);
+    if (intent && (intent.kind !== "replaceIfVersion" || intent.version !== before.version)) throw new Error(`File intent disagrees with edit plan: ${path}`);
+    prepared.push({ file, path, target, original: Buffer.from(bytes).toString("utf8"), intent: intent ?? { kind: "replaceIfVersion", version: before.version } });
+  }
+  const applied = [];
+  const recovery = [];
+  try {
+    for (const item of prepared) {
+      exec.signal.throwIfAborted();
+      await checkedPath(root, item.path);
+      const outcome = await ctx.fs.writeText(item.target, item.file.after_content, item.intent, exec.signal, policy);
+      ctx.emit("fs/observed", item.target, { kind: "present", version: outcome.version }, exec);
+      applied.push(item.path);
+      recovery.push({ path: item.path, before_sha256: sha256(item.file.after_content), after_content: item.original, edit_count: item.file.edit_count });
+    }
+  } catch (error) {
+    return { status: "partial_failure", error: String(error), files_modified: applied, recovery_patch: { files: recovery } };
+  }
+  return { status: "ok", files_modified: applied, edits_applied: plan.files.reduce((n, f) => n + f.edit_count, 0) };
+}
+
+// src/workflows.ts
+var groups = ["context", "review", "refactor", "export", "advanced", "all"];
+var context = ["build_or_update_graph_tool", "get_minimal_context_tool", "query_graph_tool", "semantic_search_nodes_tool", "list_graph_stats_tool", "get_docs_section_tool"];
+var members = {
+  context,
+  review: [...context, "detect_changes_tool", "get_review_context_tool", "get_impact_radius_tool", "get_affected_flows_tool", "list_flows_tool", "get_flow_tool", "list_communities_tool"],
+  refactor: [...context, "refactor_tool", "apply_refactor_tool", "find_large_functions_tool", "get_impact_radius_tool", "get_affected_flows_tool", "detect_changes_tool"],
+  export: [...context, "generate_wiki_tool", "get_wiki_page_tool"],
+  advanced: [...context, "embed_graph_tool", "run_postprocess_tool", "list_repos_tool", "cross_repo_search_tool", "list_communities_tool", "get_community_tool", "get_architecture_overview_tool", "get_hub_nodes_tool", "get_bridge_nodes_tool", "get_knowledge_gaps_tool", "get_surprising_connections_tool", "get_suggested_questions_tool", "traverse_graph_tool", "detect_changes_tool", "list_flows_tool", "get_flow_tool", "find_large_functions_tool"]
+};
+var skillWorkflow = {
+  "build-graph": "advanced",
+  "debug-issue": "review",
+  "explore-codebase": "advanced",
+  "refactor-safely": "refactor",
+  "review-changes": "review",
+  "review-delta": "review",
+  "review-pr": "review"
+};
+var publicName = (raw) => `mcp__code_review_graph__${raw}`;
+function exposed(workflow, names) {
+  return workflow === "all" ? names : names.filter((name2) => members[workflow].includes(name2));
+}
+
+// src/index.ts
+var name = "code-review-graph";
+var inject = ["tools", "agents", "fs", "sandboxPolicy", "skills", "systemPrompt"];
+var engineDir = join2(process.env.DSH_HOME ?? join2(homedir(), ".dsh"), "code-review-graph", "engine");
+var Config = z.object({
+  engineCommand: z.string().default(join2(engineDir, process.platform === "win32" ? "Scripts/code-review-graph.exe" : "bin/code-review-graph")),
+  engineArgs: z.array(z.string()).default([]),
+  timeoutMs: z.number().min(1e3).default(12e4),
+  authorizedRepos: z.array(z.string()).default([]),
+  embeddingProviders: z.array(z.string()).default(["local"]),
+  embeddingEnv: z.array(z.string()).default([])
+});
+var output = {
+  schema: { type: "object", additionalProperties: true },
+  render: (_args, value) => [{ type: "text", text: JSON.stringify(value) }]
+};
+async function apply(ctx, config) {
+  const engine = { command: config.engineCommand, args: config.engineArgs, timeoutMs: config.timeoutMs, env: Object.fromEntries(config.embeddingEnv.filter((key) => /^(OPENAI|GOOGLE|GEMINI|MINIMAX|VOYAGE|CRG)_/.test(key) && process.env[key] !== void 0).map((key) => [key, process.env[key]])) };
+  const pool = new BackendPool(engine);
+  const snapshot = JSON.parse(await readFile(new URL("../capabilities.json", import.meta.url), "utf8"));
+  const tools = snapshot.tools.filter((t) => t.name !== "get_refactor_edit_plan_tool");
+  const names = tools.map((t) => t.name);
+  const masks = /* @__PURE__ */ new Map();
+  const ajv = new Ajv({ strict: false, allErrors: true });
+  const life = new AbortController();
+  ctx.effect(() => () => {
+    life.abort();
+    for (const dispose of masks.values()) dispose();
+    return pool.dispose();
+  });
+  const switchWorkflow = (agent, workflow) => {
+    pool.activate(agent.id);
+    const available = workflow ? exposed(workflow, names) : [];
+    masks.get(agent.id)?.();
+    masks.set(agent.id, agent.ctx.tools.restrict({ deny: names.filter((n) => !available.includes(n)).map(publicName) }));
+    return available.map(publicName);
+  };
+  async function rootFor(exec) {
+    if (!exec.agent) throw new Error("Graph tools require a session-owned agent");
+    return repository(exec.agent.session.header.cwd);
+  }
+  async function invoke(raw, args, exec) {
+    const root = await rootFor(exec);
+    const owner = exec.agent.id;
+    const signal = AbortSignal.any([exec.signal, life.signal]);
+    const providerKey = ["build_or_update_graph_tool", "run_postprocess_tool"].includes(raw) ? "embedding_provider" : "provider";
+    const provider = args[providerKey];
+    if (raw === "get_docs_section_tool") await checkedPath(root, "docs/LLM-OPTIMIZED-REFERENCE.md", true);
+    if (provider && (typeof provider !== "string" || !config.embeddingProviders.includes(provider))) throw new Error("Embedding provider has not been authorized in plugin configuration");
+    if (["semantic_search_nodes_tool", "embed_graph_tool"].includes(raw) && !provider) args = { ...args, provider: "local" };
+    for (const key of ["file_path", "file", "path"]) {
+      if (typeof args[key] === "string") await checkedPath(root, args[key]);
+    }
+    for (const key of ["changed_files", "files"]) {
+      if (Array.isArray(args[key])) for (const path of args[key]) await checkedPath(root, path, true);
+    }
+    if (raw === "list_repos_tool") {
+      const roots = [.../* @__PURE__ */ new Set([root, ...await Promise.all(config.authorizedRepos.map(repository))])];
+      return { status: "ok", repos: roots.map((path) => ({ alias: roots.filter((r) => basename2(r) === basename2(path)).length > 1 ? `${basename2(path)}@${sha256(path).slice(0, 8)}` : basename2(path), path })) };
+    }
+    if (raw === "cross_repo_search_tool") {
+      const roots = [.../* @__PURE__ */ new Set([root, ...await Promise.all(config.authorizedRepos.map(repository))])];
+      const aliases = roots.map((path) => ({ path, alias: roots.filter((r) => basename2(r) === basename2(path)).length > 1 ? `${basename2(path)}@${sha256(path).slice(0, 8)}` : basename2(path) }));
+      const selected = Array.isArray(args.repos) ? args.repos : [];
+      if (selected.some((n) => !aliases.some((r) => r.alias === n))) throw new Error("Repository is not authorized");
+      const results = [];
+      for (const { path: repo, alias } of aliases.filter((r) => !selected.length || selected.includes(r.alias))) {
+        if (repo !== root && !await stat2(join2(repo, ".code-review-graph/graph.db")).then(() => true, () => false)) throw new Error(`Build ${repo} in its own session first`);
+        await pool.ensure(repo, owner, signal);
+        const data = valueOf(await pool.call(repo, owner, "semantic_search_nodes_tool", { query: args.query, kind: args.kind, limit: args.limit ?? 20, provider: "local", repo_root: repo }, signal));
+        for (const result2 of data.results) results.push({ ...result2, repo: alias });
+      }
+      results.sort((a, b) => Number(b.score ?? 0) - Number(a.score ?? 0));
+      const limit = Math.min(Number(args.max_results ?? 50), 100);
+      return { status: "ok", results: results.slice(0, limit), total: results.length, results_omitted: Math.max(0, results.length - limit), truncated: results.length > limit };
+    }
+    const graphUpdate = raw !== "build_or_update_graph_tool" ? await pool.ensure(root, owner, signal) : void 0;
+    if (raw === "apply_refactor_tool" && !args.dry_run) {
+      const plan = valueOf(await pool.call(root, owner, "get_refactor_edit_plan_tool", { refactor_id: args.refactor_id, repo_root: root }, signal));
+      const result2 = await commitPlan(ctx, exec, root, plan);
+      if (result2.status === "ok") {
+        try {
+          return { ...result2, graph_update: valueOf(await pool.call(root, owner, "build_or_update_graph_tool", { repo_root: root }, signal)) };
+        } catch (error) {
+          return { ...result2, graph_update_error: String(error) };
+        }
+      }
+      return result2;
+    }
+    if (raw === "apply_refactor_tool") args = { ...args, dry_run: true };
+    const result = valueOf(await pool.call(root, owner, raw, { ...args, repo_root: root }, signal));
+    if (raw === "build_or_update_graph_tool") await pool.ensure(root, owner, signal);
+    return graphUpdate ? { ...result, graph_update: graphUpdate } : result;
+  }
+  for (const tool of tools) {
+    const parameters = structuredClone(tool.inputSchema);
+    delete parameters.properties?.repo_root;
+    parameters.required = parameters.required?.filter((n) => n !== "repo_root");
+    parameters.additionalProperties = false;
+    const validate = ajv.compile(parameters);
+    const definition = {
+      name: publicName(tool.name),
+      description: tool.description ?? tool.name,
+      parameters,
+      output,
+      timeoutMs: config.timeoutMs,
+      execute: async (args, exec) => {
+        if (!validate(args)) throw new Error(ajv.errorsText(validate.errors));
+        return invoke(tool.name, args, exec);
+      }
+    };
+    ctx.effect(() => ctx.tools.register(definition));
+  }
+  ctx.effect(() => ctx.tools.register({
+    name: "crg_workflow",
+    description: "Select code graph tools: context, review, refactor, export, advanced or all. Begin with get_minimal_context.",
+    parameters: { type: "object", properties: { workflow: { type: "string", enum: [...groups] } }, required: ["workflow"], additionalProperties: false },
+    output,
+    execute: async (args, exec) => {
+      const workflow = args.workflow;
+      if (!groups.includes(workflow) || !exec.agent) throw new Error("Invalid workflow or missing agent");
+      return { tools: switchWorkflow(exec.agent, workflow) };
+    }
+  }));
+  const visualizationSchema = { type: "object", properties: {
+    mode: { type: "string", enum: ["auto", "file", "community", "full"] },
+    format: { type: "string", enum: ["html", "json", "graphml", "cypher", "obsidian", "svg"] },
+    seed_file: { type: "array", items: { type: "string" } },
+    seed_symbol: { type: "string" },
+    seed_changed: { type: "boolean" },
+    seed_changed_base: { type: "string" },
+    seed_flow: { type: "string" },
+    path_from: { type: "string" },
+    path_to: { type: "string" },
+    depth: { type: "integer", minimum: 0 },
+    render_depth: { type: "integer", minimum: 0 },
+    max_nodes: { type: "integer", minimum: 1 }
+  }, additionalProperties: false };
+  const validateVisualization = ajv.compile(visualizationSchema);
+  ctx.effect(() => ctx.tools.register({
+    name: "crg_visualize",
+    description: "Generate the local interactive graph for the DSH Code graph sidebar, or export HTML, JSON, GraphML, Cypher, Obsidian or SVG. Supports file, community, symbol, changed-code, flow and shortest-path views.",
+    parameters: visualizationSchema,
+    output,
+    timeoutMs: config.timeoutMs,
+    execute: async (value, exec) => {
+      if (!validateVisualization(value)) throw new Error(ajv.errorsText(validateVisualization.errors));
+      const args = value;
+      const root = await rootFor(exec);
+      const signal = AbortSignal.any([exec.signal, life.signal]);
+      await pool.ensure(root, exec.agent.id, signal);
+      for (const path of args.seed_file ?? []) await checkedPath(root, path, true);
+      const command = ["visualize", "--repo", root];
+      for (const [key, value2] of Object.entries(args)) {
+        const flag = `--${key.replaceAll("_", "-")}`;
+        if (Array.isArray(value2)) for (const item of value2) command.push(flag, String(item));
+        else if (value2 === true) command.push(flag);
+        else if (value2 !== void 0 && value2 !== false) command.push(flag, String(value2));
+      }
+      const { log } = await run(engine, command, root, signal);
+      const format = String(args.format ?? "html");
+      return { status: "ok", path: join2(root, ".code-review-graph", format === "obsidian" ? "obsidian" : `graph.${format}`), ...format === "html" ? { sidebar: "code-review-graph" } : {}, log };
+    }
+  }));
+  const promptNames = ["review_changes", "architecture_map", "debug_issue", "onboard_developer", "pre_merge_check"];
+  const promptSchema = { type: "object", properties: { name: { type: "string", enum: promptNames }, base: { type: "string" }, description: { type: "string" } }, required: ["name"], additionalProperties: false };
+  const validatePrompt = ajv.compile(promptSchema);
+  ctx.effect(() => ctx.tools.register({
+    name: "crg_prompt",
+    description: "Load one of the five original CRG workflows and reveal its graph tools.",
+    parameters: promptSchema,
+    output,
+    execute: async (args, exec) => {
+      if (!validatePrompt(args) || !exec.agent) throw new Error("Invalid workflow prompt or missing agent");
+      const { name: name2, ...parameters } = args;
+      const workflow = name2 === "pre_merge_check" ? "all" : name2 === "review_changes" ? "review" : name2 === "debug_issue" ? "review" : "advanced";
+      switchWorkflow(exec.agent, workflow);
+      const root = await rootFor(exec);
+      const { client } = await pool.acquire(root, exec.agent.id);
+      const result = await client.getPrompt({ name: name2, arguments: parameters }, { signal: AbortSignal.any([exec.signal, life.signal]), timeout: config.timeoutMs });
+      return { ...result, messages: result.messages.map((message) => ({ ...message, content: message.content.type === "text" ? { ...message.content, text: message.content.text.replace(/\b([a-z_]+_tool)\b/g, (raw) => names.includes(raw) ? publicName(raw) : raw) } : message.content })) };
+    }
+  }));
+  ctx.on("agent/created", ({ agent }) => {
+    switchWorkflow(agent);
+    return void 0;
+  });
+  ctx.on("agent/disposed", ({ agent }) => {
+    masks.get(agent.id)?.();
+    masks.delete(agent.id);
+    return pool.release(agent.id);
+  });
+  for (const agent of ctx.agents.list()) switchWorkflow(agent);
+  ctx.effect(() => ctx.systemPrompt.section({
+    name: "code-review-graph",
+    order: 80,
+    interpolate: false,
+    text: "Use crg_workflow to reveal task-specific local code graph tools, then get_minimal_context_tool before broader queries. Prefer minimal detail. crg_visualize opens the local graph in the Code graph sidebar. Refactors use session filesystem permissions."
+  }));
+  const skillsDir = new URL("../skills/", import.meta.url);
+  for (const slug of await readdir2(skillsDir)) {
+    const path = new URL(`${slug}/SKILL.md`, skillsDir);
+    const body = await readFile(path, "utf8");
+    const content = body.replace(/^---\r?\n[\s\S]*?\r?\n---\r?\n/, "").replace(/\b([a-z_]+_tool)\b/g, (raw) => names.includes(raw) ? publicName(raw) : raw);
+    if (!skillWorkflow[slug]) throw new Error(`Unmapped CRG skill: ${slug}`);
+    ctx.effect(() => ctx.skills.register({ name: `crg-${slug}`, description: `Code review graph: ${slug}`, source: "bundled", content: `First call crg_workflow with workflow "${skillWorkflow[slug]}". Tool names use mcp__code_review_graph__ prefixes.
+
+${content}` }));
+  }
+}
+export {
+  Config,
+  apply,
+  inject,
+  name,
+  output
+};
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../src/index.ts", "../src/backend.ts", "../src/safety.ts", "../src/refactor.ts", "../src/workflows.ts"],
+  "sourcesContent": ["import type { Context } from '@deepseek-ai/cordis';\nimport type { ToolDefinition, ToolRunContext } from '@deepseek-ai/dsh-tools';\nimport type {} from '@deepseek-ai/dsh-agent';\nimport type {} from '@deepseek-ai/dsh-skill';\nimport type {} from '@deepseek-ai/dsh-system-prompt';\nimport z from '@deepseek-ai/schemastery';\nimport { Ajv } from 'ajv';\nimport { readFile, readdir, stat } from 'node:fs/promises';\nimport { join, basename } from 'node:path';\nimport { homedir } from 'node:os';\nimport { BackendPool, run, valueOf, type Engine } from './backend.ts';\nimport { repository, checkedPath, sha256 } from './safety.ts';\nimport { commitPlan, type EditPlan } from './refactor.ts';\nimport { exposed, groups, publicName, skillWorkflow, type Workflow } from './workflows.ts';\n\nexport const name = 'code-review-graph';\nexport const inject = ['tools', 'agents', 'fs', 'sandboxPolicy', 'skills', 'systemPrompt'];\nconst engineDir = join(process.env.DSH_HOME ?? join(homedir(), '.dsh'), 'code-review-graph', 'engine');\nexport const Config = z.object({\n  engineCommand: z.string().default(join(engineDir, process.platform === 'win32' ? 'Scripts/code-review-graph.exe' : 'bin/code-review-graph')),\n  engineArgs: z.array(z.string()).default([]),\n  timeoutMs: z.number().min(1000).default(120000),\n  authorizedRepos: z.array(z.string()).default([]),\n  embeddingProviders: z.array(z.string()).default(['local']),\n  embeddingEnv: z.array(z.string()).default([]),\n});\nexport interface Configuration { engineCommand: string; engineArgs: string[]; timeoutMs: number; authorizedRepos: string[]; embeddingProviders: string[]; embeddingEnv: string[] }\ninterface Capability { name: string; description?: string; inputSchema: Record<string, unknown> & { properties?: Record<string, unknown>; required?: string[] } }\nexport const output: ToolDefinition['output'] = {\n  schema: { type: 'object', additionalProperties: true },\n  render: (_args, value) => [{ type: 'text', text: JSON.stringify(value) }],\n};\n\nexport async function apply(ctx: Context, config: Configuration): Promise<void> {\n  const engine: Engine = { command: config.engineCommand, args: config.engineArgs, timeoutMs: config.timeoutMs, env: Object.fromEntries(config.embeddingEnv.filter(key => /^(OPENAI|GOOGLE|GEMINI|MINIMAX|VOYAGE|CRG)_/.test(key) && process.env[key] !== undefined).map(key => [key, process.env[key]!])) };\n  const pool = new BackendPool(engine);\n  const snapshot = JSON.parse(await readFile(new URL('../capabilities.json', import.meta.url), 'utf8')) as { tools: Capability[] };\n  const tools = snapshot.tools.filter(t => t.name !== 'get_refactor_edit_plan_tool');\n  const names = tools.map(t => t.name);\n  const masks = new Map<string, () => void>();\n  const ajv = new Ajv({ strict: false, allErrors: true });\n  const life = new AbortController();\n  ctx.effect(() => () => { life.abort(); for (const dispose of masks.values()) dispose(); return pool.dispose(); });\n  const switchWorkflow = (agent: NonNullable<ToolRunContext['agent']>, workflow?: Workflow) => {\n    pool.activate(agent.id);\n    const available = workflow ? exposed(workflow, names) : [];\n    masks.get(agent.id)?.();\n    masks.set(agent.id, agent.ctx.tools.restrict({ deny: names.filter(n => !available.includes(n)).map(publicName) }));\n    return available.map(publicName);\n  };\n\n  async function rootFor(exec: ToolRunContext) {\n    if (!exec.agent) throw new Error('Graph tools require a session-owned agent');\n    return repository(exec.agent.session.header.cwd);\n  }\n\n  async function invoke(raw: string, args: Record<string, unknown>, exec: ToolRunContext) {\n    const root = await rootFor(exec);\n    const owner = exec.agent!.id;\n    const signal = AbortSignal.any([exec.signal, life.signal]);\n    const providerKey = ['build_or_update_graph_tool', 'run_postprocess_tool'].includes(raw) ? 'embedding_provider' : 'provider';\n    const provider = args[providerKey];\n    if (raw === 'get_docs_section_tool') await checkedPath(root, 'docs/LLM-OPTIMIZED-REFERENCE.md', true);\n    if (provider && (typeof provider !== 'string' || !config.embeddingProviders.includes(provider))) throw new Error('Embedding provider has not been authorized in plugin configuration');\n    if (['semantic_search_nodes_tool', 'embed_graph_tool'].includes(raw) && !provider) args = { ...args, provider: 'local' };\n    for (const key of ['file_path', 'file', 'path']) {\n      if (typeof args[key] === 'string') await checkedPath(root, args[key] as string);\n    }\n    for (const key of ['changed_files', 'files']) {\n      if (Array.isArray(args[key])) for (const path of args[key] as string[]) await checkedPath(root, path, true);\n    }\n    if (raw === 'list_repos_tool') {\n      const roots = [...new Set([root, ...await Promise.all(config.authorizedRepos.map(repository))])];\n      return { status: 'ok', repos: roots.map(path => ({ alias: roots.filter(r => basename(r) === basename(path)).length > 1 ? `${basename(path)}@${sha256(path).slice(0, 8)}` : basename(path), path })) };\n    }\n    if (raw === 'cross_repo_search_tool') {\n      const roots = [...new Set([root, ...await Promise.all(config.authorizedRepos.map(repository))])];\n      const aliases = roots.map(path => ({ path, alias: roots.filter(r => basename(r) === basename(path)).length > 1 ? `${basename(path)}@${sha256(path).slice(0, 8)}` : basename(path) }));\n      const selected = Array.isArray(args.repos) ? args.repos as string[] : [];\n      if (selected.some(n => !aliases.some(r => r.alias === n))) throw new Error('Repository is not authorized');\n      const results: Record<string, unknown>[] = [];\n      for (const { path: repo, alias } of aliases.filter(r => !selected.length || selected.includes(r.alias))) {\n        if (repo !== root && !await stat(join(repo, '.code-review-graph/graph.db')).then(() => true, () => false)) throw new Error(`Build ${repo} in its own session first`);\n        await pool.ensure(repo, owner, signal);\n        const data = valueOf(await pool.call(repo, owner, 'semantic_search_nodes_tool', { query: args.query, kind: args.kind, limit: args.limit ?? 20, provider: 'local', repo_root: repo }, signal));\n        for (const result of data.results as Record<string, unknown>[]) results.push({ ...result, repo: alias });\n      }\n      results.sort((a, b) => Number(b.score ?? 0) - Number(a.score ?? 0));\n      const limit = Math.min(Number(args.max_results ?? 50), 100);\n      return { status: 'ok', results: results.slice(0, limit), total: results.length, results_omitted: Math.max(0, results.length - limit), truncated: results.length > limit };\n    }\n    const graphUpdate = raw !== 'build_or_update_graph_tool' ? await pool.ensure(root, owner, signal) : undefined;\n    if (raw === 'apply_refactor_tool' && !args.dry_run) {\n      const plan = valueOf(await pool.call(root, owner, 'get_refactor_edit_plan_tool', { refactor_id: args.refactor_id, repo_root: root }, signal)) as unknown as EditPlan;\n      const result = await commitPlan(ctx, exec, root, plan);\n      if (result.status === 'ok') {\n        try { return { ...result, graph_update: valueOf(await pool.call(root, owner, 'build_or_update_graph_tool', { repo_root: root }, signal)) }; }\n        catch (error) { return { ...result, graph_update_error: String(error) }; }\n      }\n      return result;\n    }\n    if (raw === 'apply_refactor_tool') args = { ...args, dry_run: true };\n    const result = valueOf(await pool.call(root, owner, raw, { ...args, repo_root: root }, signal));\n    if (raw === 'build_or_update_graph_tool') await pool.ensure(root, owner, signal);\n    return graphUpdate ? { ...result, graph_update: graphUpdate } : result;\n  }\n\n  for (const tool of tools) {\n    const parameters = structuredClone(tool.inputSchema);\n    delete parameters.properties?.repo_root;\n    parameters.required = parameters.required?.filter(n => n !== 'repo_root');\n    parameters.additionalProperties = false;\n    const validate = ajv.compile(parameters);\n    const definition = {\n      name: publicName(tool.name), description: tool.description ?? tool.name, parameters, output,\n      timeoutMs: config.timeoutMs,\n      execute: async (args: unknown, exec: ToolRunContext) => {\n        if (!validate(args)) throw new Error(ajv.errorsText(validate.errors));\n        return invoke(tool.name, args as Record<string, unknown>, exec);\n      },\n    } as ToolDefinition;\n    ctx.effect(() => ctx.tools.register(definition));\n  }\n\n  ctx.effect(() => ctx.tools.register({ name: 'crg_workflow', description: 'Select code graph tools: context, review, refactor, export, advanced or all. Begin with get_minimal_context.',\n    parameters: { type: 'object', properties: { workflow: { type: 'string', enum: [...groups] } }, required: ['workflow'], additionalProperties: false }, output,\n    execute: async (args, exec) => {\n      const workflow = (args as { workflow: Workflow }).workflow;\n      if (!groups.includes(workflow) || !exec.agent) throw new Error('Invalid workflow or missing agent');\n      return { tools: switchWorkflow(exec.agent, workflow) };\n    },\n  }));\n\n  const visualizationSchema = { type: 'object', properties: {\n    mode: { type: 'string', enum: ['auto', 'file', 'community', 'full'] },\n    format: { type: 'string', enum: ['html', 'json', 'graphml', 'cypher', 'obsidian', 'svg'] },\n    seed_file: { type: 'array', items: { type: 'string' } }, seed_symbol: { type: 'string' }, seed_changed: { type: 'boolean' }, seed_changed_base: { type: 'string' }, seed_flow: { type: 'string' },\n    path_from: { type: 'string' }, path_to: { type: 'string' }, depth: { type: 'integer', minimum: 0 }, render_depth: { type: 'integer', minimum: 0 }, max_nodes: { type: 'integer', minimum: 1 },\n  }, additionalProperties: false };\n  const validateVisualization = ajv.compile(visualizationSchema);\n  ctx.effect(() => ctx.tools.register({ name: 'crg_visualize', description: 'Generate the local interactive graph for the DSH Code graph sidebar, or export HTML, JSON, GraphML, Cypher, Obsidian or SVG. Supports file, community, symbol, changed-code, flow and shortest-path views.',\n    parameters: visualizationSchema, output,\n    timeoutMs: config.timeoutMs,\n    execute: async (value, exec) => {\n      if (!validateVisualization(value)) throw new Error(ajv.errorsText(validateVisualization.errors));\n      const args = value as Record<string, unknown>;\n      const root = await rootFor(exec);\n      const signal = AbortSignal.any([exec.signal, life.signal]);\n      await pool.ensure(root, exec.agent!.id, signal);\n      for (const path of (args.seed_file ?? []) as string[]) await checkedPath(root, path, true);\n      const command = ['visualize', '--repo', root];\n      for (const [key, value] of Object.entries(args)) {\n        const flag = `--${key.replaceAll('_', '-')}`;\n        if (Array.isArray(value)) for (const item of value) command.push(flag, String(item));\n        else if (value === true) command.push(flag);\n        else if (value !== undefined && value !== false) command.push(flag, String(value));\n      }\n      const { log } = await run(engine, command, root, signal);\n      const format = String(args.format ?? 'html');\n      return { status: 'ok', path: join(root, '.code-review-graph', format === 'obsidian' ? 'obsidian' : `graph.${format}`), ...(format === 'html' ? { sidebar: 'code-review-graph' } : {}), log };\n    },\n  }));\n  const promptNames = ['review_changes', 'architecture_map', 'debug_issue', 'onboard_developer', 'pre_merge_check'];\n  const promptSchema = { type: 'object', properties: { name: { type: 'string', enum: promptNames }, base: { type: 'string' }, description: { type: 'string' } }, required: ['name'], additionalProperties: false };\n  const validatePrompt = ajv.compile(promptSchema);\n  ctx.effect(() => ctx.tools.register({ name: 'crg_prompt', description: 'Load one of the five original CRG workflows and reveal its graph tools.', parameters: promptSchema, output,\n    execute: async (args, exec) => {\n      if (!validatePrompt(args) || !exec.agent) throw new Error('Invalid workflow prompt or missing agent');\n      const { name, ...parameters } = args as { name: string; base?: string; description?: string };\n      const workflow: Workflow = name === 'pre_merge_check' ? 'all' : name === 'review_changes' ? 'review' : name === 'debug_issue' ? 'review' : 'advanced';\n      switchWorkflow(exec.agent, workflow);\n      const root = await rootFor(exec);\n      const { client } = await pool.acquire(root, exec.agent.id);\n      const result = await client.getPrompt({ name, arguments: parameters }, { signal: AbortSignal.any([exec.signal, life.signal]), timeout: config.timeoutMs });\n      return { ...result, messages: result.messages.map(message => ({ ...message, content: message.content.type === 'text' ? { ...message.content, text: message.content.text.replace(/\\b([a-z_]+_tool)\\b/g, raw => names.includes(raw) ? publicName(raw) : raw) } : message.content })) };\n    },\n  }));\n  ctx.on('agent/created', ({ agent }) => { switchWorkflow(agent); return undefined; });\n  ctx.on('agent/disposed', ({ agent }) => { masks.get(agent.id)?.(); masks.delete(agent.id); return pool.release(agent.id); });\n  for (const agent of ctx.agents.list()) switchWorkflow(agent);\n  ctx.effect(() => ctx.systemPrompt.section({ name: 'code-review-graph', order: 80, interpolate: false,\n    text: 'Use crg_workflow to reveal task-specific local code graph tools, then get_minimal_context_tool before broader queries. Prefer minimal detail. crg_visualize opens the local graph in the Code graph sidebar. Refactors use session filesystem permissions.' }));\n\n  const skillsDir = new URL('../skills/', import.meta.url);\n  for (const slug of await readdir(skillsDir)) {\n    const path = new URL(`${slug}/SKILL.md`, skillsDir);\n    const body = await readFile(path, 'utf8');\n    const content = body.replace(/^---\\r?\\n[\\s\\S]*?\\r?\\n---\\r?\\n/, '').replace(/\\b([a-z_]+_tool)\\b/g, raw => names.includes(raw) ? publicName(raw) : raw);\n    if (!skillWorkflow[slug]) throw new Error(`Unmapped CRG skill: ${slug}`);\n    ctx.effect(() => ctx.skills.register({ name: `crg-${slug}`, description: `Code review graph: ${slug}`, source: 'bundled', content: `First call crg_workflow with workflow \"${skillWorkflow[slug]}\". Tool names use mcp__code_review_graph__ prefixes.\\n\\n${content}` }));\n  }\n}\n", "import { Client } from '@modelcontextprotocol/sdk/client/index.js';\nimport { StdioClientTransport } from '@modelcontextprotocol/sdk/client/stdio.js';\nimport { spawn, type ChildProcess } from 'node:child_process';\nimport { checkedData, scrubEnv } from './safety.ts';\n\nexport interface Engine { command: string; args: string[]; timeoutMs: number; env?: Record<string, string> }\nconst environment = (engine: Engine) => ({ ...scrubEnv(process.env), ...engine.env });\nexport function valueOf(result: unknown): Record<string, unknown> {\n  const r = result as { isError?: boolean; structuredContent?: Record<string, unknown>; content?: { type: string; text?: string }[] };\n  const text = r.content?.filter(x => x.type === 'text').map(x => x.text).join('\\n') ?? '';\n  if (r.isError) throw new Error(text || 'Engine tool failed');\n  const value = r.structuredContent ?? (() => { try { return JSON.parse(text); } catch { return { text }; } })();\n  if (value.status === 'error') throw new Error(String(value.error));\n  return value;\n}\n\nexport async function connect(engine: Engine, cwd: string): Promise<Client> {\n  await checkedData(cwd);\n  const transport = new StdioClientTransport({ command: engine.command, args: [...engine.args, 'serve', '--repo', cwd], cwd, env: environment(engine), stderr: 'pipe' });\n  transport.stderr?.on('data', () => {});\n  const client = new Client({ name: 'dsh-code-review-graph', version: '0.1.0' });\n  try { await client.connect(transport); return client; }\n  catch (error) { await transport.close(); throw new Error(`CRG engine unavailable. Run dsh-crg prepare explicitly. ${String(error)}`); }\n}\n\nasync function stop(child?: ChildProcess): Promise<void> {\n  if (!child || child.exitCode !== null || child.signalCode !== null) return;\n  await new Promise<void>(resolve => {\n    const timer = setTimeout(() => { child.kill('SIGKILL'); resolve(); }, 3000);\n    child.once('exit', () => { clearTimeout(timer); resolve(); });\n    child.kill();\n  });\n}\ninterface Entry { client: Client; owners: Set<string>; ready?: Promise<void>; watcher?: ChildProcess; watchError?: string; queue: Promise<unknown>; update?: Record<string, unknown> }\nexport class BackendPool {\n  private entries = new Map<string, Promise<Entry>>();\n  private retired = new Set<string>();\n  private closed = false;\n  constructor(readonly engine: Engine) {}\n  activate(owner: string): void { this.retired.delete(owner); }\n\n  async acquire(root: string, owner: string): Promise<Entry> {\n    if (this.closed || this.retired.has(owner)) throw new Error('Session has been released');\n    let promise = this.entries.get(root);\n    if (!promise) {\n      promise = connect(this.engine, root).then(client => ({ client, owners: new Set<string>(), queue: Promise.resolve() }));\n      this.entries.set(root, promise);\n      promise.catch(() => { if (this.entries.get(root) === promise) this.entries.delete(root); });\n    }\n    const entry = await promise;\n    if (this.closed || this.retired.has(owner)) throw new Error('Session has been released');\n    entry.owners.add(owner);\n    return entry;\n  }\n\n  async call(root: string, owner: string, name: string, args: Record<string, unknown>, signal: AbortSignal) {\n    const entry = await this.acquire(root, owner);\n    // One mutation at a time per SQLite graph; cancellation restarts this repository's shared worker.\n    const work = entry.queue.catch(() => {}).then(async () => {\n      signal.throwIfAborted();\n      const cancel = () => { this.entries.delete(root); void stop(entry.watcher); void entry.client.close(); };\n      signal.addEventListener('abort', cancel, { once: true });\n      let result: unknown;\n      try {\n        await checkedData(root);\n        if (entry.watchError) throw new Error(`Incremental watcher stopped: ${entry.watchError}`);\n        result = await entry.client.callTool({ name, arguments: args }, undefined, { signal, timeout: this.engine.timeoutMs });\n      } catch (error) {\n        // A timed-out Python thread cannot safely be left mutating the graph.\n        this.entries.delete(root); await stop(entry.watcher); await entry.client.close();\n        throw error;\n      } finally { signal.removeEventListener('abort', cancel); }\n      // A normal tool error must not discard another call's pending refactor preview.\n      valueOf(result);\n      return result;\n    });\n    entry.queue = work;\n    return work;\n  }\n\n  async ensure(root: string, owner: string, signal: AbortSignal): Promise<Record<string, unknown> | undefined> {\n    const entry = await this.acquire(root, owner);\n    entry.ready ??= (async () => {\n      // An existing database can be stale after all sessions were closed.\n      const update = valueOf(await this.call(root, owner, 'build_or_update_graph_tool', { repo_root: root }, signal));\n      if (update.status === 'partial' || Array.isArray(update.warnings) && update.warnings.length) entry.update = update;\n      signal.throwIfAborted();\n      const watcher = spawn(this.engine.command, [...this.engine.args, 'watch', '--repo', root], { cwd: root, env: environment(this.engine), stdio: 'ignore', windowsHide: true });\n      entry.watcher = watcher;\n      await new Promise<void>((resolve, reject) => { watcher.once('spawn', resolve); watcher.once('error', reject); });\n      watcher.on('error', error => { entry.watchError = String(error); });\n      watcher.on('exit', (code, reason) => { if (entry.watcher === watcher) entry.watchError = `exit ${code ?? reason}`; });\n    })().catch(error => { entry.ready = undefined; throw error; });\n    await entry.ready;\n    if (entry.watchError) throw new Error(`Incremental watcher stopped: ${entry.watchError}`);\n    return entry.update;\n  }\n\n  async release(owner: string): Promise<void> {\n    this.retired.add(owner);\n    for (const [root, promise] of this.entries) {\n      const entry = await promise.catch(() => undefined);\n      if (!entry) continue;\n      entry.owners.delete(owner);\n      if (!entry.owners.size) { this.entries.delete(root); const watcher = entry.watcher; entry.watcher = undefined; await stop(watcher); await entry.client.close(); }\n    }\n  }\n\n  async dispose(): Promise<void> {\n    this.closed = true;\n    const entries = [...this.entries.values()]; this.entries.clear();\n    for (const promise of entries) {\n      const entry = await promise.catch(() => undefined);\n      if (entry) { const watcher = entry.watcher; entry.watcher = undefined; await stop(watcher); await entry.client.close(); }\n    }\n  }\n}\n\nexport async function run(engine: Engine, args: string[], cwd: string, signal: AbortSignal): Promise<{ log: string }> {\n  await checkedData(cwd);\n  signal = AbortSignal.any([signal, AbortSignal.timeout(engine.timeoutMs)]);\n  return new Promise((resolve, reject) => {\n    let log = '';\n    const child = spawn(engine.command, [...engine.args, ...args], { cwd, env: environment(engine), stdio: ['ignore', 'pipe', 'pipe'], windowsHide: true, signal });\n    const capture = (bytes: Buffer) => { log = (log + bytes.toString()).slice(-16000); };\n    child.stdout?.on('data', capture); child.stderr?.on('data', capture);\n    child.on('error', reject);\n    child.on('exit', code => code === 0 ? resolve({ log }) : reject(new Error(`Engine command exited ${code}: ${log}`)));\n  });\n}\n", "import { realpath, stat, lstat, readdir } from 'node:fs/promises';\nimport { isAbsolute, relative, resolve, sep, dirname, basename, join } from 'node:path';\nimport { createHash } from 'node:crypto';\n\nexport const sha256 = (bytes: Uint8Array | string): string => createHash('sha256').update(bytes).digest('hex');\n\nexport function contained(root: string, path: string): boolean {\n  const part = relative(root, path);\n  return part === '' || (!isAbsolute(part) && part !== '..' && !part.startsWith(`..${sep}`));\n}\n\nexport async function checkedPath(root: string, value: string, allowMissing = false): Promise<string> {\n  const candidate = resolve(root, value);\n  if (!contained(root, candidate)) throw new Error('Path is outside the authorized repository');\n  let current = candidate;\n  const suffix: string[] = [];\n  while (allowMissing && !await lstat(current).then(() => true, () => false)) {\n    suffix.unshift(basename(current)); current = dirname(current);\n  }\n  const canonical = join(await realpath(current), ...suffix);\n  if (!contained(root, canonical)) throw new Error('Symlink escapes the authorized repository');\n  return canonical;\n}\n\nexport async function repository(cwd: string | undefined): Promise<string> {\n  if (!cwd || !isAbsolute(cwd)) throw new Error('This session has no local absolute workspace');\n  const root = await realpath(cwd);\n  if (!(await stat(root)).isDirectory()) throw new Error('Workspace is not a directory');\n  for (const marker of ['.git', '.svn']) {\n    if (await stat(resolve(root, marker)).then(() => true, () => false)) return root;\n  }\n  throw new Error('Select a Git or SVN repository before using the graph');\n}\n\nexport function scrubEnv(env: NodeJS.ProcessEnv): Record<string, string> {\n  return { ...Object.fromEntries(Object.entries(env).filter(([key, value]) => value !== undefined && !/KEY|PASSWORD|SECRET|TOKEN|^(DSH|CRG|OPENAI|GOOGLE|GEMINI|MINIMAX|VOYAGE|HF)_/i.test(key))), HF_HUB_OFFLINE: '1', TRANSFORMERS_OFFLINE: '1', HF_HUB_DISABLE_TELEMETRY: '1' } as Record<string, string>;\n}\n\nexport async function checkedData(root: string): Promise<void> {\n  const dir = resolve(root, '.code-review-graph');\n  if (!await lstat(dir).then(() => true, () => false)) return;\n  await checkedPath(root, dir);\n  const entries = await readdir(dir, { withFileTypes: true, recursive: true });\n  for (const entry of entries) {\n    if (entry.isSymbolicLink()) await checkedPath(root, join(entry.parentPath, entry.name));\n  }\n}\n", "import type { Context } from '@deepseek-ai/cordis';\nimport type { ToolRunContext } from '@deepseek-ai/dsh-tools';\nimport type {} from '@deepseek-ai/dsh-fs';\nimport type {} from '@deepseek-ai/dsh-sandbox-policy';\nimport { checkedPath, sha256 } from './safety.ts';\n\nexport interface EditPlan { files: { path: string; before_sha256: string; after_content: string; edit_count: number }[] }\nexport async function commitPlan(ctx: Context, exec: ToolRunContext, root: string, plan: EditPlan) {\n  if (!exec.agent) throw new Error('Refactor requires a session-owned agent');\n  const policy = ctx.sandboxPolicy.resolve({ session: exec.agent.session });\n  if (policy.mode === 'read-only') throw new Error('Refactor is denied by read-only policy');\n  if (!Array.isArray(plan.files)) throw new Error('Invalid edit plan');\n  const prepared = [];\n  const seen = new Set<string>();\n  for (const file of plan.files) {\n    if (typeof file.path !== 'string' || !/^[a-f0-9]{64}$/.test(file.before_sha256) || typeof file.after_content !== 'string' || !Number.isInteger(file.edit_count) || file.edit_count < 0) throw new Error('Invalid edit plan file');\n    exec.signal.throwIfAborted();\n    const path = await checkedPath(root, file.path);\n    if (seen.has(path)) throw new Error('Duplicate edit target');\n    seen.add(path);\n    const target = await ctx.fs.resolve(path, { cwd: root, signal: exec.signal });\n    const before = await ctx.fs.stat(target, exec.signal);\n    if (!before || before.type !== 'file') throw new Error('Edit target is not a regular file');\n    const bytes = await ctx.fs.readBytes(target, exec.signal, 32 * 1024 * 1024);\n    if (sha256(bytes) !== file.before_sha256) throw new Error(`Stale edit plan: ${path}`);\n    const after = await ctx.fs.stat(target, exec.signal);\n    if (after?.version !== before.version) throw new Error(`File changed during preflight: ${path}`);\n    const intent = await ctx.waterfall('fs/write-intent', target, exec, () => undefined);\n    if (intent && (intent.kind !== 'replaceIfVersion' || intent.version !== before.version)) throw new Error(`File intent disagrees with edit plan: ${path}`);\n    prepared.push({ file, path, target, original: Buffer.from(bytes).toString('utf8'), intent: intent ?? { kind: 'replaceIfVersion' as const, version: before.version } });\n  }\n  const applied: string[] = [];\n  const recovery: EditPlan['files'] = [];\n  try {\n    for (const item of prepared) {\n      exec.signal.throwIfAborted();\n      await checkedPath(root, item.path);\n      const outcome = await ctx.fs.writeText(item.target, item.file.after_content, item.intent, exec.signal, policy);\n      ctx.emit('fs/observed', item.target, { kind: 'present', version: outcome.version }, exec);\n      applied.push(item.path);\n      recovery.push({ path: item.path, before_sha256: sha256(item.file.after_content), after_content: item.original, edit_count: item.file.edit_count });\n    }\n  } catch (error) {\n    // Return the complete recovery patch through the tool output; never silently roll back a later edit.\n    return { status: 'partial_failure', error: String(error), files_modified: applied, recovery_patch: { files: recovery } };\n  }\n  return { status: 'ok', files_modified: applied, edits_applied: plan.files.reduce((n, f) => n + f.edit_count, 0) };\n}\n", "export const groups = ['context', 'review', 'refactor', 'export', 'advanced', 'all'] as const;\nexport type Workflow = typeof groups[number];\nconst context = ['build_or_update_graph_tool', 'get_minimal_context_tool', 'query_graph_tool', 'semantic_search_nodes_tool', 'list_graph_stats_tool', 'get_docs_section_tool'];\nconst members: Record<Exclude<Workflow, 'all'>, string[]> = {\n  context,\n  review: [...context, 'detect_changes_tool', 'get_review_context_tool', 'get_impact_radius_tool', 'get_affected_flows_tool', 'list_flows_tool', 'get_flow_tool', 'list_communities_tool'],\n  refactor: [...context, 'refactor_tool', 'apply_refactor_tool', 'find_large_functions_tool', 'get_impact_radius_tool', 'get_affected_flows_tool', 'detect_changes_tool'],\n  export: [...context, 'generate_wiki_tool', 'get_wiki_page_tool'],\n  advanced: [...context, 'embed_graph_tool', 'run_postprocess_tool', 'list_repos_tool', 'cross_repo_search_tool', 'list_communities_tool', 'get_community_tool', 'get_architecture_overview_tool', 'get_hub_nodes_tool', 'get_bridge_nodes_tool', 'get_knowledge_gaps_tool', 'get_surprising_connections_tool', 'get_suggested_questions_tool', 'traverse_graph_tool', 'detect_changes_tool', 'list_flows_tool', 'get_flow_tool', 'find_large_functions_tool'],\n};\nexport const skillWorkflow: Record<string, Workflow> = {\n  'build-graph': 'advanced', 'debug-issue': 'review', 'explore-codebase': 'advanced',\n  'refactor-safely': 'refactor', 'review-changes': 'review', 'review-delta': 'review', 'review-pr': 'review',\n};\nexport const publicName = (raw: string): string => `mcp__code_review_graph__${raw}`;\nexport function exposed(workflow: Workflow, names: string[]): string[] {\n  return workflow === 'all' ? names : names.filter(name => members[workflow].includes(name));\n}\n"],
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+}