drugflow-molstar 0.4.7 → 0.4.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/drugflow-molstar-0.4.8.css +1 -0
- package/build/drugflow-molstar-component-0.4.8.js +25 -0
- package/build/drugflow-molstar-plugin-0.4.8.js +2 -0
- package/build/drugflow-molstar-plugin-0.4.8.js.LICENSE.txt +39 -0
- package/lib/alphafold-transparency.js +157 -62
- package/lib/contact.d.ts +7 -14
- package/lib/contact.js +68 -72
- package/lib/custom-events.js +15 -15
- package/lib/domain-annotations/behavior.d.ts +1 -1
- package/lib/domain-annotations/behavior.js +24 -20
- package/lib/domain-annotations/color.js +22 -22
- package/lib/domain-annotations/prop.js +111 -62
- package/lib/drugflow-molstar-component-build-0.4.8.js +2 -0
- package/lib/drugflow-molstar-component-build-0.4.8.js.LICENSE.txt +24 -0
- package/lib/helpers.d.ts +3 -3
- package/lib/helpers.js +94 -89
- package/lib/index.d.ts +902 -1
- package/lib/index.js +2814 -1875
- package/lib/labels.d.ts +1 -1
- package/lib/labels.js +34 -20
- package/lib/loci-details.js +46 -34
- package/lib/sifts-mapping.js +32 -28
- package/lib/sifts-mappings-behaviour.d.ts +1 -1
- package/lib/sifts-mappings-behaviour.js +30 -26
- package/lib/spec.js +40 -52
- package/lib/structure_contact3d.d.ts +14 -21
- package/lib/structure_contact3d.js +46 -25
- package/lib/subscribe-events.js +18 -19
- package/lib/superposition-export.js +178 -102
- package/lib/superposition-focus-representation.d.ts +2 -2
- package/lib/superposition-focus-representation.js +131 -73
- package/lib/superposition-sifts-mapping.js +150 -105
- package/lib/superposition.js +810 -495
- package/lib/ui/alphafold-superposition.d.ts +1 -1
- package/lib/ui/alphafold-superposition.js +118 -94
- package/lib/ui/alphafold-tranparency.js +43 -27
- package/lib/ui/annotation-controls.js +89 -83
- package/lib/ui/export-superposition.d.ts +0 -1
- package/lib/ui/export-superposition.js +50 -32
- package/lib/ui/pdbe-left-panel.d.ts +0 -1
- package/lib/ui/pdbe-left-panel.js +105 -82
- package/lib/ui/pdbe-screenshot-controls.js +83 -54
- package/lib/ui/pdbe-structure-controls.js +57 -34
- package/lib/ui/pdbe-viewport-controls.js +29 -23
- package/lib/ui/segment-tree.js +663 -440
- package/lib/ui/superposition-components.js +312 -208
- package/lib/ui/superposition-viewport.js +18 -11
- package/package.json +3 -3
- package/build/drugflow-molstar-0.4.7.css +0 -1
- package/build/drugflow-molstar-component-0.4.7.js +0 -25
- package/build/drugflow-molstar-plugin-0.4.7.js +0 -2
- package/build/drugflow-molstar-plugin-0.4.7.js.LICENSE.txt +0 -64
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.PDBeViewportControls = void 0;
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var tslib_1 = require("tslib");
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var jsx_runtime_1 = require("react/jsx-runtime");
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var config_1 = require("Molstar/mol-plugin/config");
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var common_1 = require("Molstar/mol-plugin-ui/controls/common");
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var selection_1 = require("Molstar/mol-plugin-ui/structure/selection");
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var pdbe_screenshot_controls_1 = require("./pdbe-screenshot-controls");
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var simple_settings_1 = require("Molstar/mol-plugin-ui/viewport/simple-settings");
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var viewport_1 = require("Molstar/mol-plugin-ui/viewport");
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var icons_1 = require("Molstar/mol-plugin-ui/controls/icons");
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var PDBeViewportControls = /** @class */ (function (_super) {
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tslib_1.__extends(PDBeViewportControls, _super);
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function PDBeViewportControls() {
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return _super !== null && _super.apply(this, arguments) || this;
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}
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PDBeViewportControls.prototype.isBlack = function (customeState) {
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if (customeState && customeState.initParams && customeState.initParams.bgColor) {
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var color = customeState.initParams.bgColor;
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if (color.r === 0 && color.g === 0 && color.b === 0)
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return true;
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}
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return false;
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}
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render() {
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};
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PDBeViewportControls.prototype.render = function () {
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var customeState = this.plugin.customState;
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var showPDBeLink = false;
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var showControlToggle = true;
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var showControlInfo = true;
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if (customeState && customeState.initParams && customeState.initParams.moleculeId && customeState.initParams.pdbeLink)
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showPDBeLink = true;
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if (customeState && customeState.initParams && customeState.initParams.superposition)
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showControlToggle = false;
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if (customeState && customeState.initParams && customeState.initParams.hideCanvasControls && customeState.initParams.hideCanvasControls.indexOf('controlInfo') > -1)
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showControlInfo = false;
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var bgColor = this.isBlack(customeState) ? '#fff' : '#555';
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var pdbeLink = {
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parentStyle: { width: 'auto' },
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bgStyle: { position: 'absolute', height: '27px', width: '54px', marginLeft: '-33px' },
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containerStyle: { position: 'absolute', right: '10px', top: '10px', padding: '3px 3px 3px 18px' },
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style: { height: '12px', width: '12px', border: 0, position: 'absolute', margin: '4px 0 0 -13px' }
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}
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};
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return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [showPDBeLink && (0, jsx_runtime_1.jsxs)("div", { className: 'msp-viewport-controls-buttons', style: pdbeLink.containerStyle, children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background', style: pdbeLink.bgStyle }), (0, jsx_runtime_1.jsxs)("a", { className: 'msp-pdbe-link', style: pdbeLink.style, target: "_blank", href:
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}
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var vwpBtnsTopMargin = { marginTop: '30px' };
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return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [showPDBeLink && (0, jsx_runtime_1.jsxs)("div", { className: 'msp-viewport-controls-buttons', style: pdbeLink.containerStyle, children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background', style: pdbeLink.bgStyle }), (0, jsx_runtime_1.jsxs)("a", { className: 'msp-pdbe-link', style: pdbeLink.style, target: "_blank", href: "https://pdbe.org/".concat(customeState.initParams.moleculeId), children: [(0, jsx_runtime_1.jsx)("img", { src: pdbeLink.pdbeImg.src, alt: pdbeLink.pdbeImg.alt, style: pdbeLink.pdbeImg.style }), customeState.initParams.moleculeId] })] }), (0, jsx_runtime_1.jsxs)("div", { className: 'msp-viewport-controls', style: showPDBeLink ? vwpBtnsTopMargin : void 0, children: [(0, jsx_runtime_1.jsxs)("div", { className: 'msp-viewport-controls-buttons', children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), showControlToggle && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), showControlInfo && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {})] })] }), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", { className: 'msp-viewport-controls-panel', children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, { header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: (0, jsx_runtime_1.jsx)(pdbe_screenshot_controls_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }) }) }), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", { className: 'msp-viewport-controls-panel', children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, { header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls', children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}) }) })] })] });
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};
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return PDBeViewportControls;
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}(viewport_1.ViewportControls));
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exports.PDBeViewportControls = PDBeViewportControls;
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