drugflow-molstar 0.3.72 → 0.3.74

package/build/drugflow-molstar-plugin-0.3.74.js.LICENSE.txt

@@ -0,0 +1,39 @@
+/**
+ * @license React
+ * react-dom.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * react-jsx-runtime.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * react.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * scheduler.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */

package/lib/drugflow-molstar-component-build-0.3.73.js

@@ -0,0 +1,2 @@
+/*! For license information please see drugflow-molstar-component-build-0.3.73.js.LICENSE.txt */
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package/lib/drugflow-molstar-component-build-0.3.73.js.LICENSE.txt

@@ -0,0 +1,24 @@
+/**
+ * @license
+ * Copyright (c) 2017 The Polymer Project Authors. All rights reserved.
+ * This code may only be used under the BSD style license found at
+ * http://polymer.github.io/LICENSE.txt
+ * The complete set of authors may be found at
+ * http://polymer.github.io/AUTHORS.txt
+ * The complete set of contributors may be found at
+ * http://polymer.github.io/CONTRIBUTORS.txt
+ * Code distributed by Google as part of the polymer project is also
+ * subject to an additional IP rights grant found at
+ * http://polymer.github.io/PATENTS.txt
+ */
+
+/**
+@license
+Copyright (c) 2019 The Polymer Project Authors. All rights reserved.
+This code may only be used under the BSD style license found at
+http://polymer.github.io/LICENSE.txt The complete set of authors may be found at
+http://polymer.github.io/AUTHORS.txt The complete set of contributors may be
+found at http://polymer.github.io/CONTRIBUTORS.txt Code distributed by Google as
+part of the polymer project is also subject to an additional IP rights grant
+found at http://polymer.github.io/PATENTS.txt
+*/

package/lib/drugflow-molstar-component-build-0.3.74.js

@@ -0,0 +1,2 @@
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Use `unsafeCSS` or `css` instead.");this.cssText=t}get styleSheet(){return void 0===this._styleSheet&&(W?(this._styleSheet=new CSSStyleSheet,this._styleSheet.replaceSync(this.cssText)):this._styleSheet=null),this._styleSheet}toString(){return this.cssText}}(window.litElementVersions||(window.litElementVersions=[])).push("2.5.1");const G={};class K extends B{static getStyles(){return this.styles}static _getUniqueStyles(){if(this.hasOwnProperty(JSCompiler_renameProperty("_styles",this)))return;const t=this.getStyles();if(Array.isArray(t)){const e=(t,s)=>t.reduceRight(((t,s)=>Array.isArray(s)?e(s,t):(t.add(s),t)),s),s=e(t,new Set),i=[];s.forEach((t=>i.unshift(t))),this._styles=i}else this._styles=void 0===t?[]:[t];this._styles=this._styles.map((t=>{if(t instanceof CSSStyleSheet&&!W){const e=Array.prototype.slice.call(t.cssRules).reduce(((t,e)=>t+e.cssText),"");return new J(String(e),D)}return t}))}initialize(){super.initialize(),this.constructor._getUniqueStyles(),this.renderRoot=this.createRenderRoot(),window.ShadowRoot&&this.renderRoot instanceof window.ShadowRoot&&this.adoptStyles()}createRenderRoot(){return this.attachShadow(this.constructor.shadowRootOptions)}adoptStyles(){const t=this.constructor._styles;0!==t.length&&(void 0===window.ShadyCSS||window.ShadyCSS.nativeShadow?W?this.renderRoot.adoptedStyleSheets=t.map((t=>t instanceof CSSStyleSheet?t:t.styleSheet)):this._needsShimAdoptedStyleSheets=!0:window.ShadyCSS.ScopingShim.prepareAdoptedCssText(t.map((t=>t.cssText)),this.localName))}connectedCallback(){super.connectedCallback(),this.hasUpdated&&void 0!==window.ShadyCSS&&window.ShadyCSS.styleElement(this)}update(t){const e=this.render();super.update(t),e!==G&&this.constructor.render(e,this.renderRoot,{scopeName:this.localName,eventContext:this}),this._needsShimAdoptedStyleSheets&&(this._needsShimAdoptedStyleSheets=!1,this.constructor._styles.forEach((t=>{const e=document.createElement("style");e.textContent=t.cssText,this.renderRoot.appendChild(e)})))}render(){return G}}K.finalized=!0,K.render=(t,s,i)=>{if(!i||"object"!=typeof i||!i.scopeName)throw new Error("The `scopeName` option is required.");const n=i.scopeName,r=k.has(s),o=q&&11===s.nodeType&&!!s.host,a=o&&!L.has(n),l=a?document.createDocumentFragment():s;if(((t,s,i)=>{let n=k.get(s);void 0===n&&(e(s,s.firstChild),k.set(s,n=new N(Object.assign({templateFactory:O},i))),n.appendInto(s)),n.setValue(t),n.commit()})(t,l,Object.assign({templateFactory:I(n)},i)),a){const t=k.get(l);k.delete(l);((t,e,s)=>{L.add(t);const i=s?s.element:document.createElement("template"),n=e.querySelectorAll("style"),{length:r}=n;if(0===r)return void window.ShadyCSS.prepareTemplateStyles(i,t);const o=document.createElement("style");for(let t=0;t<r;t++){const e=n[t];e.parentNode.removeChild(e),o.textContent+=e.textContent}(t=>{j.forEach((e=>{const s=R.get(M(e,t));void 0!==s&&s.keyString.forEach((t=>{const{element:{content:e}}=t,s=new Set;Array.from(e.querySelectorAll("style")).forEach((t=>{s.add(t)})),c(t,s)}))}))})(t);const a=i.content;s?function(t,e,s=null){const{element:{content:i},parts:n}=t;if(null==s)return void i.appendChild(e);const r=document.createTreeWalker(i,133,null,!1);let o=u(n),a=0,l=-1;for(;r.nextNode();)for(l++,r.currentNode===s&&(a=p(e),s.parentNode.insertBefore(e,s));-1!==o&&n[o].index===l;){if(a>0){for(;-1!==o;)n[o].index+=a,o=u(n,o);return}o=u(n,o)}}(s,o,a.firstChild):a.insertBefore(o,a.firstChild),window.ShadyCSS.prepareTemplateStyles(i,t);const l=a.querySelector("style");if(window.ShadyCSS.nativeShadow&&null!==l)e.insertBefore(l.cloneNode(!0),e.firstChild);else if(s){a.insertBefore(o,a.firstChild);const t=new Set;t.add(o),c(s,t)}})(n,l,t.value instanceof g?t.value.template:void 0),e(s,s.firstChild),s.appendChild(l),k.set(s,t)}!r&&o&&window.ShadyCSS.styleElement(s.host)},K.shadowRootOptions={mode:"open"}})();

package/lib/drugflow-molstar-component-build-0.3.74.js.LICENSE.txt

@@ -0,0 +1,24 @@
+/**
+ * @license
+ * Copyright (c) 2017 The Polymer Project Authors. All rights reserved.
+ * This code may only be used under the BSD style license found at
+ * http://polymer.github.io/LICENSE.txt
+ * The complete set of authors may be found at
+ * http://polymer.github.io/AUTHORS.txt
+ * The complete set of contributors may be found at
+ * http://polymer.github.io/CONTRIBUTORS.txt
+ * Code distributed by Google as part of the polymer project is also
+ * subject to an additional IP rights grant found at
+ * http://polymer.github.io/PATENTS.txt
+ */
+
+/**
+@license
+Copyright (c) 2019 The Polymer Project Authors. All rights reserved.
+This code may only be used under the BSD style license found at
+http://polymer.github.io/LICENSE.txt The complete set of authors may be found at
+http://polymer.github.io/AUTHORS.txt The complete set of contributors may be
+found at http://polymer.github.io/CONTRIBUTORS.txt Code distributed by Google as
+part of the polymer project is also subject to an additional IP rights grant
+found at http://polymer.github.io/PATENTS.txt
+*/

package/lib/index.js

@@ -30,6 +30,7 @@ var linear_algebra_1 = require("molstar/lib/mol-math/linear-algebra");
 var int_1 = require("molstar/lib/mol-data/int");
 var names_1 = require("molstar/lib/mol-util/color/names");
 var structure_contact3d_1 = require("./structure_contact3d");
+var structure_transparency_1 = require("molstar/lib/mol-plugin-state/helpers/structure-transparency");
 require('molstar/lib/mol-plugin-ui/skin/light.scss');
 var DrugflowMolstarPlugin = /** @class */ (function () {
     function DrugflowMolstarPlugin() {
@@ -46,6 +47,11 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
             "now": { "polymer": [], "ligand": [], "other": [] }
         };
         this.isHighlightColorUpdated = false;
+        // 隐藏状态追踪器
+        this.hiddenState = {
+            chains: new Set(),
+            ligands: new Set() // 隐藏的配体（格式: "chainId:resId" 或 "chainId:resName"）
+        };
         this.canvas = {
             toggleControls: function (isVisible) {
                 if (typeof isVisible === 'undefined')
@@ -495,7 +501,370 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
                             return [2 /*return*/];
                     }
                 });
-            }); }
+            }); },
+            /**
+             * 应用所有隐藏状态（内部方法）
+             */
+            _applyHiddenState: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var structures, components, _b, structures_1, s, chainArray, _loop_1, this_1, i, ligandArray, _loop_2, this_2, i;
+                var _this = this;
+                return tslib_1.__generator(this, function (_c) {
+                    switch (_c.label) {
+                        case 0:
+                            structures = this.plugin.managers.structure.hierarchy.current.structures;
+                            components = [];
+                            for (_b = 0, structures_1 = structures; _b < structures_1.length; _b++) {
+                                s = structures_1[_b];
+                                components.push.apply(components, s.components);
+                            }
+                            if (components.length === 0) {
+                                return [2 /*return*/];
+                            }
+                            // 先清除所有透明度
+                            return [4 /*yield*/, (0, structure_transparency_1.clearStructureTransparency)(this.plugin, components)];
+                        case 1:
+                            // 先清除所有透明度
+                            _c.sent();
+                            // 如果没有需要隐藏的，直接返回
+                            if (this.hiddenState.chains.size === 0 && this.hiddenState.ligands.size === 0) {
+                                return [2 /*return*/];
+                            }
+                            chainArray = Array.from(this.hiddenState.chains);
+                            _loop_1 = function (i) {
+                                var chainId;
+                                return tslib_1.__generator(this, function (_d) {
+                                    switch (_d.label) {
+                                        case 0:
+                                            chainId = chainArray[i];
+                                            return [4 /*yield*/, (0, structure_transparency_1.setStructureTransparency)(this_1.plugin, components, 1, function (structure) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                                                    var chainQuery;
+                                                    var _this = this;
+                                                    return tslib_1.__generator(this, function (_b) {
+                                                        chainQuery = (0, structure_selection_query_1.StructureSelectionQuery)("Chain_".concat(chainId), builder_1.MolScriptBuilder.struct.generator.atomGroups({
+                                                            'chain-test': builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('auth_asym_id'), chainId])
+                                                        }), {
+                                                            description: "Chain ".concat(chainId),
+                                                            category: structure_selection_query_1.StructureSelectionCategory.Manipulate
+                                                        });
+                                                        return [2 /*return*/, this.plugin.runTask(mol_task_1.Task.create('Select Chain', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                                                                var selection;
+                                                                return tslib_1.__generator(this, function (_b) {
+                                                                    switch (_b.label) {
+                                                                        case 0: return [4 /*yield*/, chainQuery.getSelection(this.plugin, runtime, structure)];
+                                                                        case 1:
+                                                                            selection = _b.sent();
+                                                                            return [2 /*return*/, structure_1.StructureSelection.toLociWithSourceUnits(selection)];
+                                                                    }
+                                                                });
+                                                            }); }))];
+                                                    });
+                                                }); })];
+                                        case 1:
+                                            _d.sent();
+                                            return [2 /*return*/];
+                                    }
+                                });
+                            };
+                            this_1 = this;
+                            i = 0;
+                            _c.label = 2;
+                        case 2:
+                            if (!(i < chainArray.length)) return [3 /*break*/, 5];
+                            return [5 /*yield**/, _loop_1(i)];
+                        case 3:
+                            _c.sent();
+                            _c.label = 4;
+                        case 4:
+                            i++;
+                            return [3 /*break*/, 2];
+                        case 5:
+                            ligandArray = Array.from(this.hiddenState.ligands);
+                            _loop_2 = function (i) {
+                                var ligandKey, parts, chainId, identifier, resId, resName, queryConditions;
+                                return tslib_1.__generator(this, function (_e) {
+                                    switch (_e.label) {
+                                        case 0:
+                                            ligandKey = ligandArray[i];
+                                            parts = ligandKey.split(':');
+                                            chainId = parts[0];
+                                            identifier = parts[1];
+                                            resId = isNaN(Number(identifier)) ? undefined : Number(identifier);
+                                            resName = isNaN(Number(identifier)) ? identifier : undefined;
+                                            queryConditions = {
+                                                'chain-test': builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('auth_asym_id'), chainId])
+                                            };
+                                            if (resName) {
+                                                queryConditions['residue-test'] = builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('auth_comp_id'), resName.toUpperCase()]);
+                                            }
+                                            else if (resId !== undefined) {
+                                                queryConditions['residue-test'] = builder_1.MolScriptBuilder.core.rel.eq([builder_1.MolScriptBuilder.ammp('auth_seq_id'), resId]);
+                                            }
+                                            return [4 /*yield*/, (0, structure_transparency_1.setStructureTransparency)(this_2.plugin, components, 1, function (structure) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                                                    var ligandQuery;
+                                                    var _this = this;
+                                                    return tslib_1.__generator(this, function (_b) {
+                                                        ligandQuery = (0, structure_selection_query_1.StructureSelectionQuery)("Ligand_".concat(ligandKey), builder_1.MolScriptBuilder.struct.generator.atomGroups(queryConditions), {
+                                                            description: "Ligand at ".concat(ligandKey),
+                                                            category: structure_selection_query_1.StructureSelectionCategory.Manipulate
+                                                        });
+                                                        return [2 /*return*/, this.plugin.runTask(mol_task_1.Task.create('Select Ligand', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                                                                var selection;
+                                                                return tslib_1.__generator(this, function (_b) {
+                                                                    switch (_b.label) {
+                                                                        case 0: return [4 /*yield*/, ligandQuery.getSelection(this.plugin, runtime, structure)];
+                                                                        case 1:
+                                                                            selection = _b.sent();
+                                                                            return [2 /*return*/, structure_1.StructureSelection.toLociWithSourceUnits(selection)];
+                                                                    }
+                                                                });
+                                                            }); }))];
+                                                    });
+                                                }); })];
+                                        case 1:
+                                            _e.sent();
+                                            return [2 /*return*/];
+                                    }
+                                });
+                            };
+                            this_2 = this;
+                            i = 0;
+                            _c.label = 6;
+                        case 6:
+                            if (!(i < ligandArray.length)) return [3 /*break*/, 9];
+                            return [5 /*yield**/, _loop_2(i)];
+                        case 7:
+                            _c.sent();
+                            _c.label = 8;
+                        case 8:
+                            i++;
+                            return [3 /*break*/, 6];
+                        case 9: return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 使用透明度隐藏指定的链
+             * @param chainId 链ID，例如 'A', 'B'
+             */
+            hideChain: function (chainId) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            // 添加到隐藏状态
+                            this.hiddenState.chains.add(chainId);
+                            // 重新应用所有隐藏状态
+                            return [4 /*yield*/, this.visual._applyHiddenState()];
+                        case 1:
+                            // 重新应用所有隐藏状态
+                            _b.sent();
+                            console.log("\u2705 Chain ".concat(chainId, " hidden"));
+                            return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 清除指定链的透明度来显示
+             * @param chainId 链ID，例如 'A', 'B'
+             */
+            showChain: function (chainId) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            // 从隐藏状态中移除
+                            this.hiddenState.chains.delete(chainId);
+                            // 重新应用所有隐藏状态
+                            return [4 /*yield*/, this.visual._applyHiddenState()];
+                        case 1:
+                            // 重新应用所有隐藏状态
+                            _b.sent();
+                            console.log("\u2705 Chain ".concat(chainId, " shown"));
+                            return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 使用透明度隐藏指定的配体
+             * @param chainId 链ID
+             * @param resId 残基序号（可选）
+             * @param resName 残基名称（可选）
+             */
+            hideLigand: function (chainId, resId, resName) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var identifier, ligandKey;
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            identifier = resId !== undefined ? resId.toString() : (resName || 'all');
+                            ligandKey = "".concat(chainId, ":").concat(identifier);
+                            // 添加到隐藏状态
+                            this.hiddenState.ligands.add(ligandKey);
+                            // 重新应用所有隐藏状态
+                            return [4 /*yield*/, this.visual._applyHiddenState()];
+                        case 1:
+                            // 重新应用所有隐藏状态
+                            _b.sent();
+                            console.log("\u2705 Ligand ".concat(ligandKey, " hidden"));
+                            return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 清除指定配体的透明度来显示
+             * @param chainId 链ID
+             * @param resId 残基序号（可选）
+             * @param resName 残基名称（可选）
+             */
+            showLigand: function (chainId, resId, resName) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var identifier, ligandKey;
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            identifier = resId !== undefined ? resId.toString() : (resName || 'all');
+                            ligandKey = "".concat(chainId, ":").concat(identifier);
+                            // 从隐藏状态中移除
+                            this.hiddenState.ligands.delete(ligandKey);
+                            // 重新应用所有隐藏状态
+                            return [4 /*yield*/, this.visual._applyHiddenState()];
+                        case 1:
+                            // 重新应用所有隐藏状态
+                            _b.sent();
+                            console.log("\u2705 Ligand ".concat(ligandKey, " shown"));
+                            return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 批量隐藏多个链
+             * @param chainIds 链ID数组，例如 ['A', 'B', 'C']
+             */
+            hideChains: function (chainIds) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var _b, chainIds_1, chainId;
+                return tslib_1.__generator(this, function (_c) {
+                    switch (_c.label) {
+                        case 0:
+                            _b = 0, chainIds_1 = chainIds;
+                            _c.label = 1;
+                        case 1:
+                            if (!(_b < chainIds_1.length)) return [3 /*break*/, 4];
+                            chainId = chainIds_1[_b];
+                            return [4 /*yield*/, this.visual.hideChain(chainId)];
+                        case 2:
+                            _c.sent();
+                            _c.label = 3;
+                        case 3:
+                            _b++;
+                            return [3 /*break*/, 1];
+                        case 4: return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 批量显示多个链
+             * @param chainIds 链ID数组，例如 ['A', 'B', 'C']
+             */
+            showChains: function (chainIds) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var _b, chainIds_2, chainId;
+                return tslib_1.__generator(this, function (_c) {
+                    switch (_c.label) {
+                        case 0:
+                            _b = 0, chainIds_2 = chainIds;
+                            _c.label = 1;
+                        case 1:
+                            if (!(_b < chainIds_2.length)) return [3 /*break*/, 4];
+                            chainId = chainIds_2[_b];
+                            return [4 /*yield*/, this.visual.showChain(chainId)];
+                        case 2:
+                            _c.sent();
+                            _c.label = 3;
+                        case 3:
+                            _b++;
+                            return [3 /*break*/, 1];
+                        case 4: return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 切换链的显示/隐藏状态
+             * @param chainId 链ID
+             * @param visible true显示，false隐藏
+             */
+            toggleChain: function (chainId, visible) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            if (!visible) return [3 /*break*/, 2];
+                            return [4 /*yield*/, this.visual.showChain(chainId)];
+                        case 1:
+                            _b.sent();
+                            return [3 /*break*/, 4];
+                        case 2: return [4 /*yield*/, this.visual.hideChain(chainId)];
+                        case 3:
+                            _b.sent();
+                            _b.label = 4;
+                        case 4: return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 切换配体的显示/隐藏状态
+             * @param chainId 链ID
+             * @param visible true显示，false隐藏
+             * @param resId 残基序号（可选）
+             * @param resName 残基名称（可选）
+             */
+            toggleLigand: function (chainId, visible, resId, resName) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0:
+                            if (!visible) return [3 /*break*/, 2];
+                            return [4 /*yield*/, this.visual.showLigand(chainId, resId, resName)];
+                        case 1:
+                            _b.sent();
+                            return [3 /*break*/, 4];
+                        case 2: return [4 /*yield*/, this.visual.hideLigand(chainId, resId, resName)];
+                        case 3:
+                            _b.sent();
+                            _b.label = 4;
+                        case 4: return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 清除所有透明度，恢复所有被隐藏的元素
+             */
+            clearAllTransparency: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                var structures, components, _b, structures_2, s;
+                return tslib_1.__generator(this, function (_c) {
+                    switch (_c.label) {
+                        case 0:
+                            // 清空隐藏状态
+                            this.hiddenState.chains.clear();
+                            this.hiddenState.ligands.clear();
+                            structures = this.plugin.managers.structure.hierarchy.current.structures;
+                            components = [];
+                            for (_b = 0, structures_2 = structures; _b < structures_2.length; _b++) {
+                                s = structures_2[_b];
+                                components.push.apply(components, s.components);
+                            }
+                            if (!(components.length > 0)) return [3 /*break*/, 2];
+                            return [4 /*yield*/, (0, structure_transparency_1.clearStructureTransparency)(this.plugin, components)];
+                        case 1:
+                            _c.sent();
+                            _c.label = 2;
+                        case 2:
+                            console.log('✅ All transparency cleared');
+                            return [2 /*return*/];
+                    }
+                });
+            }); },
+            /**
+             * 获取当前隐藏状态
+             */
+            getHiddenState: function () {
+                return {
+                    chains: Array.from(_this.hiddenState.chains),
+                    ligands: Array.from(_this.hiddenState.ligands)
+                };
+            }
         };
         this.ArbitrarySphereVisuals = {
             'arbitrary-sphere': function (ctx, getParams) { return (0, representation_2.UnitsRepresentation)('Arbitrary sphere mesh', ctx, getParams, _this.ArbitrarySphereVisual); }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "drugflow-molstar",
-  "version": "0.3.72",
+  "version": "0.3.74",
   "description": "Molstar implementation for DrugFlow",
   "main": "index.js",
   "scripts": {