drugflow-molstar 0.3.7 → 0.3.9

package/build/drugflow-molstar-plugin-0.3.9.js.LICENSE.txt

@@ -0,0 +1,39 @@
+/**
+ * @license React
+ * react-dom.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * react-jsx-runtime.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * react.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/**
+ * @license React
+ * scheduler.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */

package/lib/drugflow-molstar-component-build-0.3.8.js

@@ -0,0 +1,2 @@
+/*! For license information please see drugflow-molstar-component-build-0.3.8.js.LICENSE.txt */
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package/lib/drugflow-molstar-component-build-0.3.8.js.LICENSE.txt

@@ -0,0 +1,24 @@
+/**
+ * @license
+ * Copyright (c) 2017 The Polymer Project Authors. All rights reserved.
+ * This code may only be used under the BSD style license found at
+ * http://polymer.github.io/LICENSE.txt
+ * The complete set of authors may be found at
+ * http://polymer.github.io/AUTHORS.txt
+ * The complete set of contributors may be found at
+ * http://polymer.github.io/CONTRIBUTORS.txt
+ * Code distributed by Google as part of the polymer project is also
+ * subject to an additional IP rights grant found at
+ * http://polymer.github.io/PATENTS.txt
+ */
+
+/**
+@license
+Copyright (c) 2019 The Polymer Project Authors. All rights reserved.
+This code may only be used under the BSD style license found at
+http://polymer.github.io/LICENSE.txt The complete set of authors may be found at
+http://polymer.github.io/AUTHORS.txt The complete set of contributors may be
+found at http://polymer.github.io/CONTRIBUTORS.txt Code distributed by Google as
+part of the polymer project is also subject to an additional IP rights grant
+found at http://polymer.github.io/PATENTS.txt
+*/

package/lib/drugflow-molstar-component-build-0.3.9.js

@@ -0,0 +1,2 @@
+/*! For license information please see drugflow-molstar-component-build-0.3.9.js.LICENSE.txt */
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package/lib/drugflow-molstar-component-build-0.3.9.js.LICENSE.txt

@@ -0,0 +1,24 @@
+/**
+ * @license
+ * Copyright (c) 2017 The Polymer Project Authors. All rights reserved.
+ * This code may only be used under the BSD style license found at
+ * http://polymer.github.io/LICENSE.txt
+ * The complete set of authors may be found at
+ * http://polymer.github.io/AUTHORS.txt
+ * The complete set of contributors may be found at
+ * http://polymer.github.io/CONTRIBUTORS.txt
+ * Code distributed by Google as part of the polymer project is also
+ * subject to an additional IP rights grant found at
+ * http://polymer.github.io/PATENTS.txt
+ */
+
+/**
+@license
+Copyright (c) 2019 The Polymer Project Authors. All rights reserved.
+This code may only be used under the BSD style license found at
+http://polymer.github.io/LICENSE.txt The complete set of authors may be found at
+http://polymer.github.io/AUTHORS.txt The complete set of contributors may be
+found at http://polymer.github.io/CONTRIBUTORS.txt Code distributed by Google as
+part of the polymer project is also subject to an additional IP rights grant
+found at http://polymer.github.io/PATENTS.txt
+*/

package/lib/index.js

@@ -354,7 +354,17 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
                 if (loci_1.Loci.isEmpty(loci))
                     return;
                 _this.plugin.managers.interactivity.lociSelects.select({ loci: loci });
-            }
+            },
+            camera_reset: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_b) {
+                    switch (_b.label) {
+                        case 0: return [4 /*yield*/, commands_1.PluginCommands.Camera.Reset(this.plugin, { durationMs: 250 })];
+                        case 1:
+                            _b.sent();
+                            return [2 /*return*/];
+                    }
+                });
+            }); }
         };
     }
     DrugflowMolstarPlugin.prototype.init = function (targetElement) {
@@ -426,6 +436,43 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
         s.apply(transforms_1.StateTransforms.Model.StructureComponent, { type: { name: 'expression', params: surroundings_query.expression } }, { ref: 'Ligand_plus_' + ligand_id });
         return s;
     };
+    DrugflowMolstarPlugin.prototype.create_tmp_label_comp = function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            var current_query, data;
+            var _this = this;
+            return tslib_1.__generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0: return [4 /*yield*/, this.remove_tmp_comp('Label_tmp')];
+                    case 1:
+                        _b.sent();
+                        current_query = structure_selection_query_1.StructureSelectionQueries.current;
+                        data = this.plugin.state.data.select(this.assemblyRef)[0].obj.data;
+                        return [4 /*yield*/, this.plugin.runTask(mol_task_1.Task.create('Create Label', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                                var s_new, selection, loci, expression;
+                                return tslib_1.__generator(this, function (_b) {
+                                    switch (_b.label) {
+                                        case 0:
+                                            s_new = this.plugin.state.data.build().to('Structure_0');
+                                            return [4 /*yield*/, current_query.getSelection(this.plugin, runtime, data)];
+                                        case 1:
+                                            selection = _b.sent();
+                                            loci = structure_1.StructureSelection.toLociWithSourceUnits(selection);
+                                            expression = structure_2.StructureElement.Loci.toExpression(loci);
+                                            s_new.apply(transforms_1.StateTransforms.Model.StructureComponent, { type: { name: 'expression', params: expression } }, { ref: 'Label_tmp' });
+                                            return [4 /*yield*/, this.applyState(s_new)];
+                                        case 2:
+                                            _b.sent();
+                                            return [2 /*return*/];
+                                    }
+                                });
+                            }); }))];
+                    case 2:
+                        _b.sent();
+                        return [2 /*return*/];
+                }
+            });
+        });
+    };
     DrugflowMolstarPlugin.prototype.create_tmp_surf_comp = function () {
         return tslib_1.__awaiter(this, void 0, void 0, function () {
             var current_query, data;
@@ -577,7 +624,7 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
                 switch (_b.label) {
                     case 0:
                         structure = this.getObj('Structure_' + ligand_id);
-                        tree = this.visual_tree(structure, comp_ref, repr_ref, if_show, params);
+                        tree = this.visual_tree(structure, comp_ref, repr_ref, params);
                         if (!tree) {
                             console.log('build tree failed');
                             return [2 /*return*/];
@@ -585,20 +632,18 @@ var DrugflowMolstarPlugin = /** @class */ (function () {
                         return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: this.plugin.state.data, tree: tree })];
                     case 1:
                         _b.sent();
+                        if (!if_show) {
+                            this.set_visibility(repr_ref);
+                        }
                         return [2 /*return*/];
                 }
             });
         });
     };
-    DrugflowMolstarPlugin.prototype.visual_tree = function (structure, comp_ref, repr_ref, if_show, params) {
+    DrugflowMolstarPlugin.prototype.visual_tree = function (structure, comp_ref, repr_ref, params) {
         var update = this.plugin.state.data.build();
         var root = update.to(comp_ref);
-        if (!if_show) {
-            root.delete(repr_ref);
-        }
-        else {
-            root.applyOrUpdate(repr_ref, transforms_1.StateTransforms.Representation.StructureRepresentation3D, (0, structure_representation_params_1.createStructureRepresentationParams)(this.plugin, structure, params));
-        }
+        root.applyOrUpdate(repr_ref, transforms_1.StateTransforms.Representation.StructureRepresentation3D, (0, structure_representation_params_1.createStructureRepresentationParams)(this.plugin, structure, params));
         return update;
     };
     DrugflowMolstarPlugin.prototype.parse_selection_info = function (selection_info) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "drugflow-molstar",
-  "version": "0.3.7",
+  "version": "0.3.9",
   "description": "Molstar implementation for DrugFlow",
   "main": "index.js",
   "scripts": {