drugflow-molstar 0.2.1 → 0.2.2

package/lib/labels.d.ts

@@ -1,2 +1,2 @@
-import { PluginBehavior } from 'Molstar/mol-plugin/behavior';
-export declare const PDBeLociLabelProvider: import("molstar/lib/mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, unknown>;
+import { PluginBehavior } from 'Molstar/mol-plugin/behavior';
+export declare const PDBeLociLabelProvider: import("molstar/lib/mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, unknown>;

package/lib/labels.js

@@ -1,42 +1,42 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.PDBeLociLabelProvider = void 0;
-var behavior_1 = require("Molstar/mol-plugin/behavior");
-var structure_1 = require("Molstar/mol-model/structure");
-var label_1 = require("Molstar/mol-theme/label");
-exports.PDBeLociLabelProvider = behavior_1.PluginBehavior.create({
-    name: 'pdbe-loci-label-provider',
-    category: 'interaction',
-    ctor: /** @class */ (function () {
-        function class_1(ctx) {
-            var _this = this;
-            this.ctx = ctx;
-            this.f = {
-                label: function (loci) {
-                    var customState = (_this.ctx.customState);
-                    var superpositionView = (customState && customState.initParams.superposition) ? true : false;
-                    var label = [];
-                    if (!superpositionView && structure_1.StructureElement.Loci.is(loci) && loci.elements.length === 1) {
-                        var entityNames = new Set();
-                        for (var _i = 0, _a = loci.elements; _i < _a.length; _i++) {
-                            var u = _a[_i].unit;
-                            var l = structure_1.StructureElement.Location.create(loci.structure, u, u.elements[0]);
-                            var name_1 = structure_1.StructureProperties.entity.pdbx_description(l).join(', ');
-                            entityNames.add(name_1);
-                        }
-                        if (entityNames.size === 1)
-                            entityNames.forEach(function (name) { return label.push(name); });
-                    }
-                    label.push((0, label_1.lociLabel)(loci));
-                    return label.filter(function (l) { return !!l; }).join('</br>');
-                },
-                group: function (label) { return label.toString().replace(/Model [0-9]+/g, 'Models'); },
-                priority: 100
-            };
-        }
-        class_1.prototype.register = function () { this.ctx.managers.lociLabels.addProvider(this.f); };
-        class_1.prototype.unregister = function () { this.ctx.managers.lociLabels.removeProvider(this.f); };
-        return class_1;
-    }()),
-    display: { name: 'Provide PDBe Loci Label' }
-});
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.PDBeLociLabelProvider = void 0;
+var behavior_1 = require("Molstar/mol-plugin/behavior");
+var structure_1 = require("Molstar/mol-model/structure");
+var label_1 = require("Molstar/mol-theme/label");
+exports.PDBeLociLabelProvider = behavior_1.PluginBehavior.create({
+    name: 'pdbe-loci-label-provider',
+    category: 'interaction',
+    ctor: /** @class */ (function () {
+        function class_1(ctx) {
+            var _this = this;
+            this.ctx = ctx;
+            this.f = {
+                label: function (loci) {
+                    var customState = (_this.ctx.customState);
+                    var superpositionView = (customState && customState.initParams.superposition) ? true : false;
+                    var label = [];
+                    if (!superpositionView && structure_1.StructureElement.Loci.is(loci) && loci.elements.length === 1) {
+                        var entityNames = new Set();
+                        for (var _i = 0, _a = loci.elements; _i < _a.length; _i++) {
+                            var u = _a[_i].unit;
+                            var l = structure_1.StructureElement.Location.create(loci.structure, u, u.elements[0]);
+                            var name_1 = structure_1.StructureProperties.entity.pdbx_description(l).join(', ');
+                            entityNames.add(name_1);
+                        }
+                        if (entityNames.size === 1)
+                            entityNames.forEach(function (name) { return label.push(name); });
+                    }
+                    label.push((0, label_1.lociLabel)(loci));
+                    return label.filter(function (l) { return !!l; }).join('</br>');
+                },
+                group: function (label) { return label.toString().replace(/Model [0-9]+/g, 'Models'); },
+                priority: 100
+            };
+        }
+        class_1.prototype.register = function () { this.ctx.managers.lociLabels.addProvider(this.f); };
+        class_1.prototype.unregister = function () { this.ctx.managers.lociLabels.removeProvider(this.f); };
+        return class_1;
+    }()),
+    display: { name: 'Provide PDBe Loci Label' }
+});

package/lib/loci-details.d.ts

@@ -1,27 +1,27 @@
-import { Bond } from 'Molstar/mol-model/structure';
-import { Loci } from 'Molstar/mol-model/loci';
-export declare type EventDetail = {
-    models?: string[];
-    entity_id?: string;
-    label_asym_id?: string;
-    asym_id?: string;
-    auth_asym_id?: string;
-    unp_accession?: string;
-    unp_seq_id?: number;
-    seq_id?: number;
-    auth_seq_id?: number;
-    ins_code?: string;
-    comp_id?: string;
-    atom_id?: string[];
-    alt_id?: string;
-    micro_het_comp_ids?: string[];
-    seq_id_begin?: number;
-    seq_id_end?: number;
-    button?: number;
-    modifiers?: any;
-};
-declare type LabelGranularity = 'element' | 'conformation' | 'residue' | 'chain' | 'structure';
-export declare function lociDetails(loci: Loci): EventDetail | undefined;
-export declare function bondLabel(bond: Bond.Location, granularity: LabelGranularity): any;
-export declare function _bundleLabel(bundle: Loci.Bundle<any>, granularity: LabelGranularity): EventDetail | (EventDetail | undefined)[];
-export {};
+import { Bond } from 'Molstar/mol-model/structure';
+import { Loci } from 'Molstar/mol-model/loci';
+export declare type EventDetail = {
+    models?: string[];
+    entity_id?: string;
+    label_asym_id?: string;
+    asym_id?: string;
+    auth_asym_id?: string;
+    unp_accession?: string;
+    unp_seq_id?: number;
+    seq_id?: number;
+    auth_seq_id?: number;
+    ins_code?: string;
+    comp_id?: string;
+    atom_id?: string[];
+    alt_id?: string;
+    micro_het_comp_ids?: string[];
+    seq_id_begin?: number;
+    seq_id_end?: number;
+    button?: number;
+    modifiers?: any;
+};
+declare type LabelGranularity = 'element' | 'conformation' | 'residue' | 'chain' | 'structure';
+export declare function lociDetails(loci: Loci): EventDetail | undefined;
+export declare function bondLabel(bond: Bond.Location, granularity: LabelGranularity): any;
+export declare function _bundleLabel(bundle: Loci.Bundle<any>, granularity: LabelGranularity): EventDetail | (EventDetail | undefined)[];
+export {};

package/lib/loci-details.js

@@ -1,128 +1,128 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports._bundleLabel = exports.bondLabel = exports.lociDetails = void 0;
-var tslib_1 = require("tslib");
-var structure_1 = require("Molstar/mol-model/structure");
-var int_1 = require("Molstar/mol-data/int");
-var sifts_mapping_1 = require("Molstar/mol-model-props/sequence/sifts-mapping");
-function lociDetails(loci) {
-    switch (loci.kind) {
-        case 'structure-loci':
-            return { models: loci.structure.models.map(function (m) { return m.entry; }).filter(function (l) { return !!l; }) };
-        case 'element-loci':
-            return structureElementStatsDetail(structure_1.StructureElement.Stats.ofLoci(loci));
-        case 'bond-loci':
-            var bond = loci.bonds[0];
-            return bond ? bondLabel(bond, 'element') : '';
-        default:
-            return void 0;
-    }
-}
-exports.lociDetails = lociDetails;
-function structureElementStatsDetail(stats) {
-    var chainCount = stats.chainCount, residueCount = stats.residueCount, elementCount = stats.elementCount;
-    if (elementCount === 1 && residueCount === 0 && chainCount === 0) {
-        return getElementDetails(stats.firstElementLoc, 'element');
-    }
-    else if (elementCount === 0 && residueCount === 1 && chainCount === 0) {
-        return getElementDetails(stats.firstResidueLoc, 'residue');
-    }
-    else {
-        return void 0;
-    }
-}
-function getElementDetails(location, granularity) {
-    if (granularity === void 0) { granularity = 'element'; }
-    var basicDetails = {};
-    var entry = location.unit.model.entry;
-    if (entry.length > 30)
-        entry = entry.substr(0, 27) + '\u2026'; // ellipsis
-    basicDetails['entry_id'] = entry; // entry
-    if (granularity !== 'structure') {
-        basicDetails['model'] = location.unit.model.modelNum; // model
-        basicDetails['instance'] = location.unit.conformation.operator.name; // instance
-    }
-    var elementDetails;
-    if (structure_1.Unit.isAtomic(location.unit)) {
-        elementDetails = atomicElementDetails(location, granularity);
-    }
-    else if (structure_1.Unit.isCoarse(location.unit)) {
-        elementDetails = coarseElementDetails(location, granularity);
-    }
-    return tslib_1.__assign(tslib_1.__assign({}, basicDetails), elementDetails);
-}
-function atomicElementDetails(location, granularity) {
-    var elementDetails = {
-        entity_id: structure_1.StructureProperties.chain.label_entity_id(location),
-        label_asym_id: structure_1.StructureProperties.chain.label_asym_id(location),
-        auth_asym_id: structure_1.StructureProperties.chain.auth_asym_id(location),
-        unp_accession: undefined,
-        unp_seq_id: undefined,
-        seq_id: structure_1.StructureProperties.residue.label_seq_id(location),
-        auth_seq_id: structure_1.StructureProperties.residue.auth_seq_id(location),
-        ins_code: structure_1.StructureProperties.residue.pdbx_PDB_ins_code(location),
-        comp_id: structure_1.StructureProperties.atom.label_comp_id(location),
-        atom_id: [structure_1.StructureProperties.atom.label_atom_id(location)],
-        alt_id: structure_1.StructureProperties.atom.label_alt_id(location)
-    };
-    var unpLabel = sifts_mapping_1.SIFTSMapping.getLabel(location);
-    if (unpLabel) {
-        var unpLabelDetails = unpLabel.split(' ');
-        if (unpLabelDetails[0] === 'UNP') {
-            elementDetails.unp_accession = unpLabelDetails[1];
-            elementDetails.unp_seq_id = +unpLabelDetails[2];
-        }
-    }
-    var microHetCompIds = structure_1.StructureProperties.residue.microheterogeneityCompIds(location);
-    elementDetails['micro_het_comp_ids'] = granularity === 'residue' && microHetCompIds.length > 1 ?
-        microHetCompIds : [elementDetails['comp_id']];
-    return elementDetails;
-}
-function coarseElementDetails(location, granularity) {
-    var elementDetails = {
-        asym_id: structure_1.StructureProperties.coarse.asym_id(location),
-        seq_id_begin: structure_1.StructureProperties.coarse.seq_id_begin(location),
-        seq_id_end: structure_1.StructureProperties.coarse.seq_id_end(location)
-    };
-    if (granularity === 'residue') {
-        if (elementDetails.seq_id_begin === elementDetails.seq_id_end) {
-            var entityIndex = structure_1.StructureProperties.coarse.entityKey(location);
-            var seq = location.unit.model.sequence.byEntityKey[entityIndex];
-            elementDetails['comp_id'] = seq.sequence.compId.value(elementDetails.seq_id_begin - 1); // 1-indexed
-        }
-    }
-    return elementDetails;
-}
-function bondLabel(bond, granularity) {
-    return _bundleLabel({ loci: [
-            structure_1.StructureElement.Loci(bond.aStructure, [{ unit: bond.aUnit, indices: int_1.OrderedSet.ofSingleton(bond.aIndex) }]),
-            structure_1.StructureElement.Loci(bond.bStructure, [{ unit: bond.bUnit, indices: int_1.OrderedSet.ofSingleton(bond.bIndex) }])
-        ] }, granularity);
-}
-exports.bondLabel = bondLabel;
-function _bundleLabel(bundle, granularity) {
-    var isSingleElements = true;
-    for (var _i = 0, _a = bundle.loci; _i < _a.length; _i++) {
-        var l = _a[_i];
-        if (!structure_1.StructureElement.Loci.is(l) || structure_1.StructureElement.Loci.size(l) !== 1) {
-            isSingleElements = false;
-            break;
-        }
-    }
-    if (isSingleElements) {
-        var locations = bundle.loci.map(function (l) {
-            var _a = l.elements[0], unit = _a.unit, indices = _a.indices;
-            return structure_1.StructureElement.Location.create(l.structure, unit, unit.elements[int_1.OrderedSet.start(indices)]);
-        });
-        var elementDetailsArr = locations.map(function (l) { return getElementDetails(l, granularity); });
-        var atomIds = [elementDetailsArr[0].atom_id[0], elementDetailsArr[1].atom_id[0]];
-        var elementDetails = elementDetailsArr[0];
-        elementDetails['atom_id'] = atomIds;
-        return elementDetails;
-    }
-    else {
-        var elementDetails = bundle.loci.map(function (l) { return lociDetails(l); });
-        return elementDetails;
-    }
-}
-exports._bundleLabel = _bundleLabel;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports._bundleLabel = exports.bondLabel = exports.lociDetails = void 0;
+var tslib_1 = require("tslib");
+var structure_1 = require("Molstar/mol-model/structure");
+var int_1 = require("Molstar/mol-data/int");
+var sifts_mapping_1 = require("Molstar/mol-model-props/sequence/sifts-mapping");
+function lociDetails(loci) {
+    switch (loci.kind) {
+        case 'structure-loci':
+            return { models: loci.structure.models.map(function (m) { return m.entry; }).filter(function (l) { return !!l; }) };
+        case 'element-loci':
+            return structureElementStatsDetail(structure_1.StructureElement.Stats.ofLoci(loci));
+        case 'bond-loci':
+            var bond = loci.bonds[0];
+            return bond ? bondLabel(bond, 'element') : '';
+        default:
+            return void 0;
+    }
+}
+exports.lociDetails = lociDetails;
+function structureElementStatsDetail(stats) {
+    var chainCount = stats.chainCount, residueCount = stats.residueCount, elementCount = stats.elementCount;
+    if (elementCount === 1 && residueCount === 0 && chainCount === 0) {
+        return getElementDetails(stats.firstElementLoc, 'element');
+    }
+    else if (elementCount === 0 && residueCount === 1 && chainCount === 0) {
+        return getElementDetails(stats.firstResidueLoc, 'residue');
+    }
+    else {
+        return void 0;
+    }
+}
+function getElementDetails(location, granularity) {
+    if (granularity === void 0) { granularity = 'element'; }
+    var basicDetails = {};
+    var entry = location.unit.model.entry;
+    if (entry.length > 30)
+        entry = entry.substr(0, 27) + '\u2026'; // ellipsis
+    basicDetails['entry_id'] = entry; // entry
+    if (granularity !== 'structure') {
+        basicDetails['model'] = location.unit.model.modelNum; // model
+        basicDetails['instance'] = location.unit.conformation.operator.name; // instance
+    }
+    var elementDetails;
+    if (structure_1.Unit.isAtomic(location.unit)) {
+        elementDetails = atomicElementDetails(location, granularity);
+    }
+    else if (structure_1.Unit.isCoarse(location.unit)) {
+        elementDetails = coarseElementDetails(location, granularity);
+    }
+    return tslib_1.__assign(tslib_1.__assign({}, basicDetails), elementDetails);
+}
+function atomicElementDetails(location, granularity) {
+    var elementDetails = {
+        entity_id: structure_1.StructureProperties.chain.label_entity_id(location),
+        label_asym_id: structure_1.StructureProperties.chain.label_asym_id(location),
+        auth_asym_id: structure_1.StructureProperties.chain.auth_asym_id(location),
+        unp_accession: undefined,
+        unp_seq_id: undefined,
+        seq_id: structure_1.StructureProperties.residue.label_seq_id(location),
+        auth_seq_id: structure_1.StructureProperties.residue.auth_seq_id(location),
+        ins_code: structure_1.StructureProperties.residue.pdbx_PDB_ins_code(location),
+        comp_id: structure_1.StructureProperties.atom.label_comp_id(location),
+        atom_id: [structure_1.StructureProperties.atom.label_atom_id(location)],
+        alt_id: structure_1.StructureProperties.atom.label_alt_id(location)
+    };
+    var unpLabel = sifts_mapping_1.SIFTSMapping.getLabel(location);
+    if (unpLabel) {
+        var unpLabelDetails = unpLabel.split(' ');
+        if (unpLabelDetails[0] === 'UNP') {
+            elementDetails.unp_accession = unpLabelDetails[1];
+            elementDetails.unp_seq_id = +unpLabelDetails[2];
+        }
+    }
+    var microHetCompIds = structure_1.StructureProperties.residue.microheterogeneityCompIds(location);
+    elementDetails['micro_het_comp_ids'] = granularity === 'residue' && microHetCompIds.length > 1 ?
+        microHetCompIds : [elementDetails['comp_id']];
+    return elementDetails;
+}
+function coarseElementDetails(location, granularity) {
+    var elementDetails = {
+        asym_id: structure_1.StructureProperties.coarse.asym_id(location),
+        seq_id_begin: structure_1.StructureProperties.coarse.seq_id_begin(location),
+        seq_id_end: structure_1.StructureProperties.coarse.seq_id_end(location)
+    };
+    if (granularity === 'residue') {
+        if (elementDetails.seq_id_begin === elementDetails.seq_id_end) {
+            var entityIndex = structure_1.StructureProperties.coarse.entityKey(location);
+            var seq = location.unit.model.sequence.byEntityKey[entityIndex];
+            elementDetails['comp_id'] = seq.sequence.compId.value(elementDetails.seq_id_begin - 1); // 1-indexed
+        }
+    }
+    return elementDetails;
+}
+function bondLabel(bond, granularity) {
+    return _bundleLabel({ loci: [
+            structure_1.StructureElement.Loci(bond.aStructure, [{ unit: bond.aUnit, indices: int_1.OrderedSet.ofSingleton(bond.aIndex) }]),
+            structure_1.StructureElement.Loci(bond.bStructure, [{ unit: bond.bUnit, indices: int_1.OrderedSet.ofSingleton(bond.bIndex) }])
+        ] }, granularity);
+}
+exports.bondLabel = bondLabel;
+function _bundleLabel(bundle, granularity) {
+    var isSingleElements = true;
+    for (var _i = 0, _a = bundle.loci; _i < _a.length; _i++) {
+        var l = _a[_i];
+        if (!structure_1.StructureElement.Loci.is(l) || structure_1.StructureElement.Loci.size(l) !== 1) {
+            isSingleElements = false;
+            break;
+        }
+    }
+    if (isSingleElements) {
+        var locations = bundle.loci.map(function (l) {
+            var _a = l.elements[0], unit = _a.unit, indices = _a.indices;
+            return structure_1.StructureElement.Location.create(l.structure, unit, unit.elements[int_1.OrderedSet.start(indices)]);
+        });
+        var elementDetailsArr = locations.map(function (l) { return getElementDetails(l, granularity); });
+        var atomIds = [elementDetailsArr[0].atom_id[0], elementDetailsArr[1].atom_id[0]];
+        var elementDetails = elementDetailsArr[0];
+        elementDetails['atom_id'] = atomIds;
+        return elementDetails;
+    }
+    else {
+        var elementDetails = bundle.loci.map(function (l) { return lociDetails(l); });
+        return elementDetails;
+    }
+}
+exports._bundleLabel = _bundleLabel;

package/lib/pdbe-molstar-component-build-3.1.2.js

@@ -0,0 +1,2 @@
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0),e(i,i.firstChild),i.appendChild(l),R.set(i,t)}!r&&n&&window.ShadyCSS.styleElement(i.host)},K.shadowRootOptions={mode:"open"};customElements.define("pdbe-molstar",class extends K{static get properties(){return{moleculeId:{type:String,attribute:"molecule-id"},assemblyId:{type:String,attribute:"assembly-id"},customDataUrl:{type:String,attribute:"custom-data-url"},customDataFormat:{type:String,attribute:"custom-data-format"},customDataBinary:{type:Boolean,attribute:"custom-data-binary"},ligandLabelCompId:{type:String,attribute:"ligand-label-comp-id"},ligandAuthAsymId:{type:String,attribute:"ligand-auth-asym-Id"},ligandAuthSeqId:{type:String,attribute:"ligand-auth-seq-id"},ligandHydrogens:{type:Boolean,attribute:"ligand-hydrogens"},pdbeUrl:{type:String,attribute:"pdbe-url"},bgColorR:{type:Number,attribute:"bg-color-r"},bgColorG:{type:Number,attribute:"bg-color-g"},bgColorB:{type:Number,attribute:"bg-color-b"},loadMaps:{type:Boolean,attribute:"load-maps"},validationAnnotation:{type:Boolean,attribute:"validation-annotation"},domainAnnotation:{type:Boolean,attribute:"domain-annotation"},lowPrecisionCoords:{type:Boolean,attribute:"low-precision"},expanded:{type:Boolean,attribute:"expanded"},hideControls:{type:Boolean,attribute:"hide-controls"},subscribeEvents:{type:Boolean,attribute:"subscribe-events"},pdbeLink:{type:Boolean,attribute:"pdbe-link"},loadCartoonsOnly:{type:Boolean,attribute:"load-cartoons-only"},selectInteraction:{type:Boolean,attribute:"select-interaction"},landscape:{type:Boolean,attribute:"landscape"},highlightColorR:{type:Number,attribute:"highlight-color-r"},highlightColorG:{type:Number,attribute:"highlight-color-g"},highlightColorB:{type:Number,attribute:"highlight-color-b"},selectColorR:{type:Number,attribute:"select-color-r"},selectColorG:{type:Number,attribute:"select-color-g"},selectColorB:{type:Number,attribute:"select-color-b"},hidePolymer:{type:Boolean,attribute:"hide-polymer"},hideWater:{type:Boolean,attribute:"hide-water"},hideHet:{type:Boolean,attribute:"hide-het"},hideCarbs:{type:Boolean,attribute:"hide-carbs"},hideNonStandard:{type:Boolean,attribute:"hide-non-standard"},hideCoarse:{type:Boolean,attribute:"hide-coarse"},visualStyle:{type:String,attribute:"visual-style"},hideExpandIcon:{type:Boolean,attribute:"hide-expand-icon"},hideSelectionIcon:{type:Boolean,attribute:"hide-selection-icon"},hideAnimationIcon:{type:Boolean,attribute:"hide-animation-icon"},hideControlToggleIcon:{type:Boolean,attribute:"hide-control-toggle-icon"},hideControlInfoIcon:{type:Boolean,attribute:"hide-control-info-icon"},alphafoldView:{type:Boolean,attribute:"alphafold-view"},lighting:{type:String,attribute:"lighting"},defaultPreset:{type:String,attribute:"default-preset"},sequencePanel:{type:Boolean,attribute:"sequence-panel"}}}validateParams(){return!(!this.moleculeId&&!this.customDataUrl||this.customDataUrl&&!this.customDataFormat)}formatParam(t){const e={ligandLabelCompId:"label_comp_id",ligandAuthAsymId:"auth_asym_id",ligandAuthSeqId:"auth_seq_id",ligandHydrogens:"hydrogens"},i=Object.keys(e),s={hidePolymer:"polymer",hideWater:"water",hideHet:"het",hideCarbs:"carbs",hideNonStandard:"nonStandard",hideCoarse:"coarse"},o=Object.keys(s),r={hideExpandIcon:"expand",hideSelectionIcon:"selection",hideAnimationIcon:"animation",hideControlToggleIcon:"controlToggle",hideControlInfoIcon:"controlInfo"},n=Object.keys(r);if("customDataUrl"==t||"customDataFormat"==t){if(this.initParams.customData)return;this.initParams.customData={url:this.customDataUrl,format:this.customDataFormat}}else if(i.indexOf(t)>-1){if(this.initParams.ligandView)return;this.initParams.ligandView=Object.assign({},{}),i.forEach((t=>{this[t]&&(this.initParams.ligandView[e[t]]=this[t])}))}else if(["highlightColorR","highlightColorG","highlightColorB"].indexOf(t)>-1&&this.highlightColorR&&this.highlightColorG&&this.highlightColorB)this.initParams.highlightColor={r:this.highlightColorR,g:this.highlightColorG,b:this.highlightColorB};else if(["selectColorR","selectColorG","selectColorB"].indexOf(t)>-1&&this.selectColorR&&this.selectColorG&&this.selectColorB)this.initParams.selectColor={r:this.selectColorR,g:this.selectColorG,b:this.selectColorB};else if(["bgColorR","bgColorG","bgColorB"].indexOf(t)>-1&&this.bgColorR&&this.bgColorG&&this.bgColorB)this.initParams.bgColor={r:this.bgColorR,g:this.bgColorG,b:this.bgColorB};else if(o.indexOf(t)>-1){if(this.initParams.hideStructure)return;this.initParams.hideStructure=[],o.forEach((t=>{this[t]&&this.initParams.hideStructure.push(s[t])}))}else if(n.indexOf(t)>-1){if(this.initParams.hideCanvasControls)return;this.initParams.hideCanvasControls=[],n.forEach((t=>{this[t]&&this.initParams.hideCanvasControls.push(r[t])}))}}createParamModel(){const t=["customDataUrl","customDataFormat","ligandLabelCompId","bgColorR","bgColorG","bgColorB","ligandAuthAsymId","ligandAuthSeqId","ligandHydrogens","highlightColorR","highlightColorG","highlightColorB","selectColorR","selectColorG","selectColorB","hidePolymer","hideWater","hideHet","hideCarbs","hideNonStandard","hideCoarse","hideExpandIcon","hideSelectionIcon","hideAnimationIcon","hideControlToggleIcon","hideControlInfoIcon"],e=this.constructor.properties;if(e)for(let i in e)this[i]&&(this.initParams||(this.initParams=Object.assign({},{})),-1==t.indexOf(i)?this.initParams[i]=this[i]:this.formatParam(i))}connectedCallback(){super.connectedCallback(),this.createParamModel(),this.viewerInstance=new PDBeMolstarPlugin,this.validateParams()&&this.initParams&&this.viewerInstance.render(this,this.initParams)}createRenderRoot(){return this}})})();

package/lib/pdbe-molstar-component-build-3.1.2.js.LICENSE.txt

@@ -0,0 +1,24 @@
+/**
+ * @license
+ * Copyright (c) 2017 The Polymer Project Authors. All rights reserved.
+ * This code may only be used under the BSD style license found at
+ * http://polymer.github.io/LICENSE.txt
+ * The complete set of authors may be found at
+ * http://polymer.github.io/AUTHORS.txt
+ * The complete set of contributors may be found at
+ * http://polymer.github.io/CONTRIBUTORS.txt
+ * Code distributed by Google as part of the polymer project is also
+ * subject to an additional IP rights grant found at
+ * http://polymer.github.io/PATENTS.txt
+ */
+
+/**
+@license
+Copyright (c) 2019 The Polymer Project Authors. All rights reserved.
+This code may only be used under the BSD style license found at
+http://polymer.github.io/LICENSE.txt The complete set of authors may be found at
+http://polymer.github.io/AUTHORS.txt The complete set of contributors may be
+found at http://polymer.github.io/CONTRIBUTORS.txt Code distributed by Google as
+part of the polymer project is also subject to an additional IP rights grant
+found at http://polymer.github.io/PATENTS.txt
+*/

package/lib/sifts-mapping.d.ts

@@ -1,16 +1,16 @@
-import { Model } from 'Molstar/mol-model/structure';
-import { StructureElement } from 'Molstar/mol-model/structure/structure';
-import { CustomModelProperty } from 'Molstar/mol-model-props/common/custom-model-property';
-export { SIFTSMapping as SIFTSMapping };
-interface SIFTSMappingMapping {
-    readonly dbName: string[];
-    readonly accession: string[];
-    readonly num: string[];
-    readonly residue: string[];
-}
-declare namespace SIFTSMapping {
-    const Provider: CustomModelProperty.Provider<{}, SIFTSMappingMapping>;
-    function isAvailable(model: Model): boolean;
-    function getKey(loc: StructureElement.Location): string;
-    function getLabel(loc: StructureElement.Location): string | undefined;
-}
+import { Model } from 'Molstar/mol-model/structure';
+import { StructureElement } from 'Molstar/mol-model/structure/structure';
+import { CustomModelProperty } from 'Molstar/mol-model-props/common/custom-model-property';
+export { SIFTSMapping as SIFTSMapping };
+interface SIFTSMappingMapping {
+    readonly dbName: string[];
+    readonly accession: string[];
+    readonly num: string[];
+    readonly residue: string[];
+}
+declare namespace SIFTSMapping {
+    const Provider: CustomModelProperty.Provider<{}, SIFTSMappingMapping>;
+    function isAvailable(model: Model): boolean;
+    function getKey(loc: StructureElement.Location): string;
+    function getLabel(loc: StructureElement.Location): string | undefined;
+}