drugflow-molstar 0.2.0 → 0.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (113) hide show
  1. package/LICENSE +201 -201
  2. package/README.md +15 -15
  3. package/build/drugflow-molstar-component-0.2.2.js +25 -0
  4. package/build/drugflow-molstar-light.css +1 -1
  5. package/build/{drugflow-molstar-plugin-0.2.0.js → drugflow-molstar-plugin-0.2.2.js} +2 -2
  6. package/lib/alphafold-transparency.d.ts +6 -6
  7. package/lib/alphafold-transparency.js +153 -153
  8. package/lib/app/molstar/lib/apps/docking-viewer/index.html +37 -0
  9. package/lib/app/molstar/lib/apps/viewer/embedded.html +44 -0
  10. package/lib/app/molstar/lib/apps/viewer/favicon.ico +0 -0
  11. package/lib/app/molstar/lib/apps/viewer/index.html +110 -0
  12. package/lib/app/molstar/lib/examples/alpha-orbitals/index.html +73 -0
  13. package/lib/app/molstar/lib/examples/basic-wrapper/index.html +138 -0
  14. package/lib/app/molstar/lib/examples/lighting/index.html +89 -0
  15. package/lib/app/molstar/lib/examples/proteopedia-wrapper/index.html +237 -0
  16. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/base.scss +33 -0
  17. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/controls-base.scss +334 -0
  18. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/controls.scss +419 -0
  19. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/help.scss +27 -0
  20. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/line-graph.scss +68 -0
  21. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/log.scss +100 -0
  22. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/misc.scss +644 -0
  23. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/sequence.scss +126 -0
  24. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/slider.scss +166 -0
  25. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -0
  26. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/toast.scss +84 -0
  27. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/transformer.scss +164 -0
  28. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -0
  29. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/layout/common.scss +72 -0
  30. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +90 -0
  31. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +99 -0
  32. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +109 -0
  33. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/layout.scss +41 -0
  34. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/logo.scss +13 -0
  35. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/normalize.scss +210 -0
  36. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/ui.scss +41 -0
  37. package/lib/app/molstar/lib/mol-plugin-ui/skin/base/variables.scss +86 -0
  38. package/lib/app/molstar/lib/mol-plugin-ui/skin/blue.scss +2 -0
  39. package/lib/app/molstar/lib/mol-plugin-ui/skin/colors/blue.scss +24 -0
  40. package/lib/app/molstar/lib/mol-plugin-ui/skin/colors/dark.scss +24 -0
  41. package/lib/app/molstar/lib/mol-plugin-ui/skin/colors/light.scss +30 -0
  42. package/lib/app/molstar/lib/mol-plugin-ui/skin/dark.scss +2 -0
  43. package/lib/app/molstar/lib/mol-plugin-ui/skin/light.scss +2 -0
  44. package/lib/custom-events.d.ts +4 -4
  45. package/lib/custom-events.js +56 -56
  46. package/lib/domain-annotations/behavior.d.ts +5 -5
  47. package/lib/domain-annotations/behavior.js +49 -49
  48. package/lib/domain-annotations/color.d.ts +10 -10
  49. package/lib/domain-annotations/color.js +78 -78
  50. package/lib/domain-annotations/prop.d.ts +35 -35
  51. package/lib/domain-annotations/prop.js +160 -160
  52. package/lib/drugflow-molstar-component-build-0.1.2.js +4268 -0
  53. package/lib/drugflow-molstar-component-build-0.1.2.js.LICENSE.txt +24 -0
  54. package/lib/drugflow-molstar-component-build-0.1.2.js.map +1 -0
  55. package/lib/drugflow-molstar-component-build-0.1.3.js +2 -0
  56. package/lib/drugflow-molstar-component-build-0.1.3.js.LICENSE.txt +24 -0
  57. package/lib/drugflow-molstar-component-build-0.1.4.js +2 -0
  58. package/lib/drugflow-molstar-component-build-0.1.4.js.LICENSE.txt +24 -0
  59. package/lib/drugflow-molstar-component-build-0.1.6.js +2 -0
  60. package/lib/drugflow-molstar-component-build-0.1.6.js.LICENSE.txt +24 -0
  61. package/lib/drugflow-molstar-component-build-0.2.2.js +2 -0
  62. package/lib/drugflow-molstar-component-build-0.2.2.js.LICENSE.txt +24 -0
  63. package/lib/helpers.d.ts +82 -81
  64. package/lib/helpers.js +278 -278
  65. package/lib/index.d.ts +1 -1
  66. package/lib/index.js +1274 -1239
  67. package/lib/labels.d.ts +2 -2
  68. package/lib/labels.js +42 -42
  69. package/lib/loci-details.d.ts +27 -27
  70. package/lib/loci-details.js +128 -128
  71. package/lib/pdbe-molstar-component-build-3.1.2.js +2 -0
  72. package/lib/pdbe-molstar-component-build-3.1.2.js.LICENSE.txt +24 -0
  73. package/lib/sifts-mapping.d.ts +16 -16
  74. package/lib/sifts-mapping.js +83 -83
  75. package/lib/sifts-mappings-behaviour.d.ts +5 -5
  76. package/lib/sifts-mappings-behaviour.js +64 -64
  77. package/lib/spec.d.ts +76 -76
  78. package/lib/spec.js +105 -105
  79. package/lib/subscribe-events.d.ts +1 -1
  80. package/lib/subscribe-events.js +194 -194
  81. package/lib/superposition-export.d.ts +4 -4
  82. package/lib/superposition-export.js +152 -152
  83. package/lib/superposition-focus-representation.d.ts +16 -16
  84. package/lib/superposition-focus-representation.js +153 -153
  85. package/lib/superposition-sifts-mapping.d.ts +22 -22
  86. package/lib/superposition-sifts-mapping.js +159 -159
  87. package/lib/superposition.d.ts +18 -18
  88. package/lib/superposition.js +794 -794
  89. package/lib/ui/alphafold-superposition.d.ts +56 -56
  90. package/lib/ui/alphafold-superposition.js +178 -178
  91. package/lib/ui/alphafold-tranparency.d.ts +22 -22
  92. package/lib/ui/alphafold-tranparency.js +65 -65
  93. package/lib/ui/annotation-controls.d.ts +24 -24
  94. package/lib/ui/annotation-controls.js +166 -166
  95. package/lib/ui/export-superposition.d.ts +6 -6
  96. package/lib/ui/export-superposition.js +71 -71
  97. package/lib/ui/pdbe-left-panel.d.ts +18 -18
  98. package/lib/ui/pdbe-left-panel.js +167 -167
  99. package/lib/ui/pdbe-screenshot-controls.d.ts +20 -20
  100. package/lib/ui/pdbe-screenshot-controls.js +101 -101
  101. package/lib/ui/pdbe-structure-controls.d.ts +17 -17
  102. package/lib/ui/pdbe-structure-controls.js +70 -70
  103. package/lib/ui/pdbe-viewport-controls.d.ts +6 -6
  104. package/lib/ui/pdbe-viewport-controls.js +56 -56
  105. package/lib/ui/segment-tree.d.ts +18 -18
  106. package/lib/ui/segment-tree.js +804 -804
  107. package/lib/ui/superposition-components.d.ts +10 -10
  108. package/lib/ui/superposition-components.js +435 -435
  109. package/lib/ui/superposition-viewport.d.ts +5 -5
  110. package/lib/ui/superposition-viewport.js +23 -23
  111. package/package.json +79 -79
  112. /package/build/{drugflow-molstar-0.2.0.css → drugflow-molstar-0.2.2.css} +0 -0
  113. /package/build/{drugflow-molstar-plugin-0.2.0.js.LICENSE.txt → drugflow-molstar-plugin-0.2.2.js.LICENSE.txt} +0 -0
@@ -0,0 +1,334 @@
1
+
2
+
3
+ .msp-form-control {
4
+ display: block;
5
+ width: 100%;
6
+ background: $msp-form-control-background;
7
+ // color: $font-color;
8
+ border: none; // !important;
9
+ padding: 0 $control-spacing;
10
+ line-height: $row-height - 2px;
11
+ height: $row-height;
12
+ -webkit-appearance: none;
13
+ -moz-appearance: none;
14
+ appearance: none;
15
+ -webkit-box-shadow: none; // iOS <4.3 & Android <4.1
16
+ box-shadow: none;
17
+ // box-shadow: none !important;
18
+ background-image: none;
19
+
20
+ // Firefox
21
+ &::-moz-placeholder {
22
+ color: color-lower-contrast($font-color, 33%);
23
+ opacity: 1; // Override Firefox's unusual default opacity; see https://github.com/twbs/bootstrap/pull/11526
24
+ }
25
+ &:-ms-input-placeholder { color: color-lower-contrast($font-color, 33%); } // Internet Explorer 10+
26
+ &::-webkit-input-placeholder { color: color-lower-contrast($font-color, 33%); } // Safari and Chrome
27
+
28
+ &:hover {
29
+ color: $hover-font-color;
30
+ background-color: color-increase-contrast($msp-form-control-background, 5%);
31
+ border: none;
32
+ outline-offset: -1px !important;
33
+ outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
34
+ }
35
+
36
+ &:active, &:focus {
37
+ color: $font-color;
38
+ background-color: $msp-form-control-background;
39
+ border: none;
40
+ outline-offset: 0;
41
+ outline: none;
42
+ }
43
+
44
+ // Disabled and read-only inputs
45
+ //
46
+ // HTML5 says that controls under a fieldset > legend:first-child won't be
47
+ // disabled if the fieldset is disabled. Due to implementation difficulty, we
48
+ // don't honor that edge case; we style them as disabled anyway.
49
+ &[disabled],
50
+ &[readonly],
51
+ fieldset[disabled] & {
52
+ background: $default-background;
53
+ opacity: 0.35;
54
+ }
55
+ }
56
+
57
+ .msp-btn {
58
+ @extend .msp-form-control;
59
+
60
+ display: inline-block;
61
+ margin-bottom: 0; // For input.msp-btn
62
+ text-align: center;
63
+ touch-action: manipulation;
64
+ cursor: pointer;
65
+ background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214
66
+ white-space: nowrap;
67
+ @include user-select(none);
68
+
69
+
70
+ padding: 0 $control-spacing;
71
+ line-height: $row-height;
72
+ border: none;
73
+ -moz-box-sizing: border-box;
74
+ box-sizing: border-box;
75
+
76
+ &[disabled] {
77
+ background: $default-background;
78
+ opacity: 0.35;
79
+ }
80
+ }
81
+
82
+ .msp-btn-block {
83
+ display: block;
84
+ width: 100%;
85
+ }
86
+
87
+ .msp-btn, .msp-btn:active, .msp-btn-link:focus, .msp-btn:hover {
88
+ outline: none;
89
+ }
90
+
91
+ .msp-material-icon {
92
+ svg {
93
+ display: inline-flex;
94
+ vertical-align: middle;
95
+ font-size: 1.2em;
96
+ margin-bottom: 3px;
97
+
98
+ fill: currentColor;
99
+ width: 1em;
100
+ height: 1em;
101
+ flex-shrink: 0;
102
+ user-select: none;
103
+ }
104
+ }
105
+
106
+ .msp-btn-block {
107
+ > .msp-material-icon {
108
+ margin-left: 0;
109
+ margin-right: .4em;
110
+ }
111
+ }
112
+
113
+ .msp-btn-childless {
114
+ > .msp-material-icon {
115
+ margin-left: 0;
116
+ margin-right: 0;
117
+ }
118
+ }
119
+
120
+ .msp-btn-icon {
121
+ border: none;
122
+ height: $row-height;
123
+ width: $row-height;
124
+ line-height: $row-height;
125
+ padding: 0;
126
+ text-align: center;
127
+
128
+ &:hover {
129
+ color: $hover-font-color;
130
+ background-color: color-increase-contrast($msp-form-control-background, 5%);
131
+ border: none;
132
+ outline-offset: -1px !important;
133
+ outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
134
+ }
135
+
136
+ &[disabled], &[disabled]:hover, &[disabled]:active {
137
+ color: $msp-btn-link-toggle-off-font-color;
138
+ }
139
+ }
140
+
141
+ .msp-btn-icon-small {
142
+ border: none;
143
+ height: $row-height;
144
+ width: 20px;
145
+ // font-size: 85%;
146
+ line-height: $row-height;
147
+ padding: 0;
148
+ text-align: center;
149
+
150
+ &:hover {
151
+ color: $hover-font-color;
152
+ background-color: color-increase-contrast($msp-form-control-background, 5%);
153
+ border: none;
154
+ outline-offset: -1px !important;
155
+ outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
156
+ }
157
+
158
+ &[disabled], &[disabled]:hover, &[disabled]:active {
159
+ color: $msp-btn-link-toggle-off-font-color;
160
+ }
161
+ }
162
+
163
+ .msp-btn-link {
164
+ font-weight: normal;
165
+ border-radius: 0;
166
+
167
+ &,
168
+ &:active,
169
+ &.active,
170
+ &[disabled],
171
+ fieldset[disabled] & {
172
+ background-color: transparent;
173
+ -webkit-box-shadow: none; // iOS <4.3 & Android <4.1
174
+ box-shadow: none;
175
+ }
176
+ &,
177
+ &:hover,
178
+ &:focus,
179
+ &:active {
180
+ border-color: transparent;
181
+ }
182
+ &:hover,
183
+ &:focus {
184
+ text-decoration: none;
185
+ background-color: transparent;
186
+ }
187
+ &[disabled],
188
+ fieldset[disabled] & {
189
+ &:hover,
190
+ &:focus {
191
+ text-decoration: none;
192
+ }
193
+ }
194
+
195
+ .msp-icon {
196
+ font-size: 100%;
197
+ }
198
+ }
199
+
200
+ .msp-btn-link, .msp-btn-link:active, .msp-btn-link:focus {
201
+ color: $msp-btn-link-font-color;
202
+ text-decoration: none;
203
+ }
204
+
205
+ .msp-btn-link:hover {
206
+ color: $hover-font-color;
207
+ text-decoration: none;
208
+ }
209
+
210
+ .msp-btn-link-toggle-on {
211
+ color: $msp-btn-link-toggle-on-font-color;
212
+ }
213
+
214
+ .msp-btn-link-toggle-off, .msp-btn-link-toggle-off:active, .msp-btn-link-toggle-off:focus {
215
+ color: $msp-btn-link-toggle-off-font-color !important;
216
+ }
217
+
218
+ .msp-btn-link-toggle-off:hover, .msp-btn-link-toggle-on:hover {
219
+ color: $hover-font-color !important;
220
+ }
221
+
222
+ @mixin msp-btn($name, $font, $bg) {
223
+ .msp-btn-#{$name}, .msp-btn-#{$name}:active, .msp-btn-#{$name}:focus {
224
+ color: $font;
225
+ background: $bg;
226
+ }
227
+ .msp-btn-#{$name}:hover {
228
+ color: $hover-font-color;
229
+ background: color-lower-contrast($bg, 2.5%);
230
+ }
231
+
232
+ .msp-btn-#{$name}[disabled], .msp-btn-#{$name}[disabled]:hover,
233
+ .msp-btn-#{$name}[disabled]:active, .msp-btn-#{$name}[disabled]:focus {
234
+ color: color-lower-contrast($font, 1%);
235
+ }
236
+ }
237
+
238
+ // @include msp-btn('remove', $msp-btn-remove-font-color, $msp-btn-remove-background);
239
+ @include msp-btn('action', $font-color, $msp-btn-action-background);
240
+ @include msp-btn('commit-on', $msp-btn-commit-on-font-color, $msp-btn-commit-on-background);
241
+ @include msp-btn('commit-off', $msp-btn-commit-off-font-color, $msp-btn-commit-off-background);
242
+
243
+ .msp-btn-remove:hover {
244
+ color: $msp-btn-remove-hover-font-color;
245
+ }
246
+ .msp-btn-commit-on:hover {
247
+ color: $msp-btn-commit-on-hover-font-color;
248
+ }
249
+
250
+ .msp-btn-action {
251
+ height: $row-height;
252
+ line-height: $row-height;
253
+ }
254
+
255
+ input[type="file"] {
256
+ display: block;
257
+ }
258
+
259
+ // Make range inputs behave like textual form controls
260
+ input[type="range"] {
261
+ display: block;
262
+ width: 100%;
263
+ }
264
+
265
+ // Make multiple select elements height not fixed
266
+ select[multiple],
267
+ select[size] {
268
+ height: auto;
269
+ }
270
+
271
+ // Reset height for `textarea`s
272
+ textarea.msp-form-control {
273
+ height: auto;
274
+ }
275
+
276
+ .msp-control-top-offset {
277
+ margin-top: 1px;
278
+ }
279
+
280
+ .msp-btn-commit {
281
+ text-align: right;
282
+ padding-top: 0;
283
+ padding-bottom: 0;
284
+ padding-right: $control-spacing;
285
+ padding-left: 0;
286
+ line-height: $row-height;
287
+ border: none;
288
+ overflow: hidden;
289
+ font-weight: bold;
290
+
291
+ .msp-icon {
292
+ display: block-inline;
293
+ line-height: $row-height;
294
+ width: $row-height;
295
+ text-align: center;
296
+ }
297
+ }
298
+
299
+ select.msp-form-control {
300
+ background: none;
301
+ background-color: $msp-form-control-background;
302
+ background-size: 8px 12px;
303
+ background-image: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAUCAMAAACzvE1FAAAADFBMVEUzMzMzMzMzMzMzMzMKAG/3AAAAA3RSTlMAf4C/aSLHAAAAPElEQVR42q3NMQ4AIAgEQTn//2cLdRKppSGzBYwzVXvznNWs8C58CiussPJj8h6NwgorrKRdTvuV9v16Afn0AYFOB7aYAAAAAElFTkSuQmCC);
304
+ background-repeat: no-repeat;
305
+ background-position: right $control-spacing center;
306
+ padding-right: ($row-height - 8px);
307
+ }
308
+
309
+ select.msp-form-control:-moz-focusring {
310
+ color: transparent;
311
+ text-shadow: 0 0 0 $font-color;
312
+ }
313
+
314
+ .msp-default-bg {
315
+ background: $default-background;
316
+ }
317
+
318
+ .msp-transparent-bg {
319
+ background: transparent;
320
+ }
321
+
322
+ .msp-no-hover-outline {
323
+ &:hover {
324
+ color: $hover-font-color;
325
+ background-color: inherit;
326
+ border: none;
327
+ outline-offset: 0 !important;
328
+ outline: none !important;
329
+ }
330
+ }
331
+
332
+ .msp-icon-inline {
333
+ margin-right: 8px;
334
+ }