dr-claw 1.1.2

package/server/database/init.sql

@@ -0,0 +1,194 @@
+-- Initialize authentication database
+PRAGMA foreign_keys = ON;
+
+-- Users table (single user system)
+CREATE TABLE IF NOT EXISTS users (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    username TEXT UNIQUE NOT NULL,
+    password_hash TEXT NOT NULL,
+    notification_email TEXT,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    last_login DATETIME,
+    is_active BOOLEAN DEFAULT 1,
+    git_name TEXT,
+    git_email TEXT,
+    has_completed_onboarding BOOLEAN DEFAULT 0
+);
+
+-- Indexes for performance
+CREATE INDEX IF NOT EXISTS idx_users_username ON users(username);
+CREATE INDEX IF NOT EXISTS idx_users_active ON users(is_active);
+
+-- API Keys table for external API access
+CREATE TABLE IF NOT EXISTS api_keys (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    user_id INTEGER NOT NULL,
+    key_name TEXT NOT NULL,
+    api_key TEXT UNIQUE NOT NULL,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    last_used DATETIME,
+    is_active BOOLEAN DEFAULT 1,
+    FOREIGN KEY (user_id) REFERENCES users(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_api_keys_key ON api_keys(api_key);
+CREATE INDEX IF NOT EXISTS idx_api_keys_user_id ON api_keys(user_id);
+CREATE INDEX IF NOT EXISTS idx_api_keys_active ON api_keys(is_active);
+
+-- User credentials table for storing various tokens/credentials (GitHub, GitLab, etc.)
+CREATE TABLE IF NOT EXISTS user_credentials (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    user_id INTEGER NOT NULL,
+    credential_name TEXT NOT NULL,
+    credential_type TEXT NOT NULL, -- 'github_token', 'gitlab_token', 'bitbucket_token', etc.
+    credential_value TEXT NOT NULL,
+    description TEXT,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    is_active BOOLEAN DEFAULT 1,
+    FOREIGN KEY (user_id) REFERENCES users(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_user_credentials_user_id ON user_credentials(user_id);
+CREATE INDEX IF NOT EXISTS idx_user_credentials_type ON user_credentials(credential_type);
+CREATE INDEX IF NOT EXISTS idx_user_credentials_active ON user_credentials(is_active);
+
+-- Session metadata index table for fast lookup and renaming
+CREATE TABLE IF NOT EXISTS session_metadata (
+    id TEXT PRIMARY KEY,
+    project_name TEXT NOT NULL,
+    provider TEXT NOT NULL,
+    display_name TEXT,
+    last_activity DATETIME,
+    message_count INTEGER DEFAULT 0,
+    is_starred BOOLEAN DEFAULT 0,
+    metadata TEXT, -- JSON storage for extra provider-specific data
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP
+);
+
+CREATE INDEX IF NOT EXISTS idx_session_metadata_project ON session_metadata(project_name);
+CREATE INDEX IF NOT EXISTS idx_session_metadata_provider ON session_metadata(provider);
+
+CREATE TABLE IF NOT EXISTS project_tags (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    project_name TEXT NOT NULL,
+    tag_key TEXT NOT NULL,
+    tag_type TEXT NOT NULL,
+    label TEXT NOT NULL,
+    color TEXT,
+    sort_order INTEGER DEFAULT 0,
+    metadata TEXT,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    UNIQUE(project_name, tag_type, tag_key)
+);
+
+CREATE INDEX IF NOT EXISTS idx_project_tags_project ON project_tags(project_name);
+CREATE INDEX IF NOT EXISTS idx_project_tags_type ON project_tags(tag_type);
+
+CREATE TABLE IF NOT EXISTS session_tag_links (
+    session_id TEXT NOT NULL,
+    tag_id INTEGER NOT NULL,
+    linked_by TEXT,
+    source TEXT,
+    metadata TEXT,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    UNIQUE(session_id, tag_id),
+    FOREIGN KEY (session_id) REFERENCES session_metadata(id) ON DELETE CASCADE,
+    FOREIGN KEY (tag_id) REFERENCES project_tags(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_session_tag_links_session ON session_tag_links(session_id);
+CREATE INDEX IF NOT EXISTS idx_session_tag_links_tag ON session_tag_links(tag_id);
+
+-- Projects table for unified management across all providers
+CREATE TABLE IF NOT EXISTS projects (
+    id TEXT PRIMARY KEY,
+    user_id INTEGER,
+    display_name TEXT,
+    path TEXT NOT NULL,
+    is_starred BOOLEAN DEFAULT 0,
+    last_accessed DATETIME,
+    metadata TEXT, -- JSON for provider-specific info
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    FOREIGN KEY (user_id) REFERENCES users(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_projects_user ON projects(user_id);
+CREATE INDEX IF NOT EXISTS idx_projects_path ON projects(path);
+
+CREATE TABLE IF NOT EXISTS auto_research_runs (
+    id TEXT PRIMARY KEY,
+    user_id INTEGER NOT NULL,
+    project_name TEXT NOT NULL,
+    project_path TEXT NOT NULL,
+    provider TEXT NOT NULL DEFAULT 'claude',
+    status TEXT NOT NULL,
+    session_id TEXT,
+    current_task_id TEXT,
+    completed_tasks INTEGER DEFAULT 0,
+    total_tasks INTEGER DEFAULT 0,
+    error TEXT,
+    metadata TEXT,
+    started_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    finished_at DATETIME,
+    email_sent_at DATETIME,
+    FOREIGN KEY (user_id) REFERENCES users(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_auto_research_runs_user ON auto_research_runs(user_id);
+CREATE INDEX IF NOT EXISTS idx_auto_research_runs_project ON auto_research_runs(project_name);
+CREATE INDEX IF NOT EXISTS idx_auto_research_runs_status ON auto_research_runs(status);
+
+CREATE TABLE IF NOT EXISTS app_settings (
+    key TEXT PRIMARY KEY,
+    value TEXT,
+    updated_at DATETIME DEFAULT CURRENT_TIMESTAMP
+);
+
+-- References (literature) cache table
+CREATE TABLE IF NOT EXISTS references_library (
+    id TEXT PRIMARY KEY,
+    user_id INTEGER NOT NULL,
+    title TEXT NOT NULL,
+    authors TEXT,
+    year INTEGER,
+    abstract TEXT,
+    doi TEXT,
+    url TEXT,
+    journal TEXT,
+    item_type TEXT DEFAULT 'article',
+    source TEXT DEFAULT 'zotero',
+    source_id TEXT,
+    keywords TEXT,
+    citation_key TEXT,
+    pdf_cached INTEGER DEFAULT 0,
+    raw_data TEXT,
+    created_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    updated_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    FOREIGN KEY (user_id) REFERENCES users(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_references_user ON references_library(user_id);
+CREATE INDEX IF NOT EXISTS idx_references_source_id ON references_library(source_id);
+CREATE INDEX IF NOT EXISTS idx_references_doi ON references_library(doi);
+
+-- Reference ↔ Project many-to-many
+CREATE TABLE IF NOT EXISTS project_references (
+    project_id TEXT NOT NULL,
+    reference_id TEXT NOT NULL,
+    added_at DATETIME DEFAULT CURRENT_TIMESTAMP,
+    UNIQUE(project_id, reference_id),
+    FOREIGN KEY (project_id) REFERENCES projects(id) ON DELETE CASCADE,
+    FOREIGN KEY (reference_id) REFERENCES references_library(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_project_references_project ON project_references(project_id);
+
+-- Reference tags
+CREATE TABLE IF NOT EXISTS reference_tags (
+    reference_id TEXT NOT NULL,
+    tag TEXT NOT NULL,
+    UNIQUE(reference_id, tag),
+    FOREIGN KEY (reference_id) REFERENCES references_library(id) ON DELETE CASCADE
+);
+
+CREATE INDEX IF NOT EXISTS idx_reference_tags_ref ON reference_tags(reference_id);