docrev 0.9.5 → 0.9.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/CHANGELOG.md +20 -0
  2. package/dev_notes/bug_repro_comment_parser.md +71 -0
  3. package/dist/lib/anchor-match.d.ts +41 -0
  4. package/dist/lib/anchor-match.d.ts.map +1 -0
  5. package/dist/lib/anchor-match.js +192 -0
  6. package/dist/lib/anchor-match.js.map +1 -0
  7. package/dist/lib/annotations.d.ts.map +1 -1
  8. package/dist/lib/annotations.js +8 -5
  9. package/dist/lib/annotations.js.map +1 -1
  10. package/dist/lib/commands/file-ops.d.ts +11 -0
  11. package/dist/lib/commands/file-ops.d.ts.map +1 -0
  12. package/dist/lib/commands/file-ops.js +301 -0
  13. package/dist/lib/commands/file-ops.js.map +1 -0
  14. package/dist/lib/commands/index.d.ts +10 -1
  15. package/dist/lib/commands/index.d.ts.map +1 -1
  16. package/dist/lib/commands/index.js +19 -1
  17. package/dist/lib/commands/index.js.map +1 -1
  18. package/dist/lib/commands/merge-resolve.d.ts +12 -0
  19. package/dist/lib/commands/merge-resolve.d.ts.map +1 -0
  20. package/dist/lib/commands/merge-resolve.js +318 -0
  21. package/dist/lib/commands/merge-resolve.js.map +1 -0
  22. package/dist/lib/commands/preview.d.ts +11 -0
  23. package/dist/lib/commands/preview.d.ts.map +1 -0
  24. package/dist/lib/commands/preview.js +138 -0
  25. package/dist/lib/commands/preview.js.map +1 -0
  26. package/dist/lib/commands/project-info.d.ts +11 -0
  27. package/dist/lib/commands/project-info.d.ts.map +1 -0
  28. package/dist/lib/commands/project-info.js +187 -0
  29. package/dist/lib/commands/project-info.js.map +1 -0
  30. package/dist/lib/commands/quality.d.ts +11 -0
  31. package/dist/lib/commands/quality.d.ts.map +1 -0
  32. package/dist/lib/commands/quality.js +384 -0
  33. package/dist/lib/commands/quality.js.map +1 -0
  34. package/dist/lib/commands/section-boundaries.d.ts +22 -0
  35. package/dist/lib/commands/section-boundaries.d.ts.map +1 -0
  36. package/dist/lib/commands/section-boundaries.js +53 -0
  37. package/dist/lib/commands/section-boundaries.js.map +1 -0
  38. package/dist/lib/commands/sections.d.ts +3 -2
  39. package/dist/lib/commands/sections.d.ts.map +1 -1
  40. package/dist/lib/commands/sections.js +4 -736
  41. package/dist/lib/commands/sections.js.map +1 -1
  42. package/dist/lib/commands/sync.d.ts +11 -0
  43. package/dist/lib/commands/sync.d.ts.map +1 -0
  44. package/dist/lib/commands/sync.js +576 -0
  45. package/dist/lib/commands/sync.js.map +1 -0
  46. package/dist/lib/commands/text-ops.d.ts +11 -0
  47. package/dist/lib/commands/text-ops.d.ts.map +1 -0
  48. package/dist/lib/commands/text-ops.js +357 -0
  49. package/dist/lib/commands/text-ops.js.map +1 -0
  50. package/dist/lib/commands/utilities.d.ts +2 -4
  51. package/dist/lib/commands/utilities.d.ts.map +1 -1
  52. package/dist/lib/commands/utilities.js +3 -1572
  53. package/dist/lib/commands/utilities.js.map +1 -1
  54. package/dist/lib/commands/verify-anchors.d.ts +17 -0
  55. package/dist/lib/commands/verify-anchors.d.ts.map +1 -0
  56. package/dist/lib/commands/verify-anchors.js +215 -0
  57. package/dist/lib/commands/verify-anchors.js.map +1 -0
  58. package/dist/lib/commands/word-tools.d.ts +11 -0
  59. package/dist/lib/commands/word-tools.d.ts.map +1 -0
  60. package/dist/lib/commands/word-tools.js +272 -0
  61. package/dist/lib/commands/word-tools.js.map +1 -0
  62. package/dist/lib/diff-engine.d.ts +25 -0
  63. package/dist/lib/diff-engine.d.ts.map +1 -0
  64. package/dist/lib/diff-engine.js +354 -0
  65. package/dist/lib/diff-engine.js.map +1 -0
  66. package/dist/lib/import.d.ts +44 -118
  67. package/dist/lib/import.d.ts.map +1 -1
  68. package/dist/lib/import.js +25 -1173
  69. package/dist/lib/import.js.map +1 -1
  70. package/dist/lib/restore-references.d.ts +35 -0
  71. package/dist/lib/restore-references.d.ts.map +1 -0
  72. package/dist/lib/restore-references.js +188 -0
  73. package/dist/lib/restore-references.js.map +1 -0
  74. package/dist/lib/word-extraction.d.ts +100 -0
  75. package/dist/lib/word-extraction.d.ts.map +1 -0
  76. package/dist/lib/word-extraction.js +594 -0
  77. package/dist/lib/word-extraction.js.map +1 -0
  78. package/lib/anchor-match.ts +238 -0
  79. package/lib/annotations.ts +9 -5
  80. package/lib/commands/file-ops.ts +372 -0
  81. package/lib/commands/index.ts +27 -0
  82. package/lib/commands/merge-resolve.ts +378 -0
  83. package/lib/commands/preview.ts +178 -0
  84. package/lib/commands/project-info.ts +244 -0
  85. package/lib/commands/quality.ts +517 -0
  86. package/lib/commands/section-boundaries.ts +72 -0
  87. package/lib/commands/sections.ts +3 -870
  88. package/lib/commands/sync.ts +701 -0
  89. package/lib/commands/text-ops.ts +449 -0
  90. package/lib/commands/utilities.ts +62 -2043
  91. package/lib/commands/verify-anchors.ts +261 -0
  92. package/lib/commands/word-tools.ts +340 -0
  93. package/lib/diff-engine.ts +465 -0
  94. package/lib/import.ts +108 -1504
  95. package/lib/restore-references.ts +240 -0
  96. package/lib/word-extraction.ts +759 -0
  97. package/package.json +1 -1
  98. package/skill/REFERENCE.md +29 -2
  99. package/skill/SKILL.md +12 -2
@@ -0,0 +1,244 @@
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+ /**
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+ * Project information commands: word-count (wc), stats, search
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+ *
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+ * Read-only queries about the project state.
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+ */
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+
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+ import type { Command } from 'commander';
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+ import {
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+ chalk,
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+ fs,
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+ path,
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+ fmt,
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+ findFiles,
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+ loadBuildConfig,
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+ countAnnotations,
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+ getComments,
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+ countWords,
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+ } from './context.js';
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+
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+ // Use the actual BuildConfig from build.ts which allows string|Author[]
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+ type BuildConfig = ReturnType<typeof loadBuildConfig>;
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+
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+ // Options interfaces
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+ interface WordCountOptions {
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+ limit?: number;
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+ journal?: string;
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+ }
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+
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+ interface StatsOptions {
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+ // No options currently
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+ }
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+
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+ interface SearchOptions {
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+ ignoreCase?: boolean;
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+ context?: number;
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+ }
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+
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+ /**
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+ * Register project-info commands with the program
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+ */
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+ export function register(program: Command): void {
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+ // ==========================================================================
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+ // WORD-COUNT command - Per-section word counts
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+ // ==========================================================================
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+
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+ program
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+ .command('word-count')
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+ .alias('wc')
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+ .description('Show word counts per section')
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+ .option('-l, --limit <number>', 'Warn if total exceeds limit', parseInt)
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+ .option('-j, --journal <name>', 'Use journal word limit')
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+ .action(async (options: WordCountOptions) => {
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+ let config: Partial<BuildConfig> = {};
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+ try {
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+ config = loadBuildConfig('.') || {};
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+ } catch {
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+ // Not in a rev project, that's ok
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+ }
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+ const sections = config.sections || [];
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+
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+ if (sections.length === 0) {
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+ // Try to find .md files
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+ const mdFiles = fs.readdirSync('.').filter(f =>
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+ f.endsWith('.md') && !['README.md', 'CLAUDE.md', 'paper.md'].includes(f)
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+ );
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+ if (mdFiles.length === 0) {
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+ console.error(chalk.red('No section files found. Run from a rev project directory.'));
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+ process.exit(1);
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+ }
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+ sections.push(...mdFiles);
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+ }
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+
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+ let total = 0;
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+ const rows: string[][] = [];
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+
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+ for (const section of sections) {
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+ if (!fs.existsSync(section)) continue;
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+ const text = fs.readFileSync(section, 'utf-8');
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+ const words = countWords(text);
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+ total += words;
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+ rows.push([section, words.toLocaleString()]);
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+ }
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+
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+ rows.push(['', '']);
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+ rows.push([chalk.bold('Total'), chalk.bold(total.toLocaleString())]);
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+
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+ console.log(fmt.header('Word Count'));
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+ console.log(fmt.table(['Section', 'Words'], rows));
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+
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+ // Check limit
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+ let limit = options.limit;
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+ if (options.journal) {
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+ const { getJournalProfile } = await import('../journals.js');
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+ const profile = getJournalProfile(options.journal);
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+ if (profile?.requirements?.wordLimit?.main) {
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+ limit = profile.requirements.wordLimit.main;
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+ console.log(chalk.dim(`\nUsing ${profile.name} word limit: ${limit.toLocaleString()}`));
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+ }
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+ }
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+
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+ if (limit && total > limit) {
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+ console.log(chalk.red(`\n⚠ Over limit by ${(total - limit).toLocaleString()} words`));
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+ } else if (limit) {
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+ console.log(chalk.green(`\n✓ Within limit (${(limit - total).toLocaleString()} words remaining)`));
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+ }
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+ });
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+
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+ // ==========================================================================
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+ // STATS command - Project dashboard
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+ // ==========================================================================
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+
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+ program
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+ .command('stats')
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+ .description('Show project statistics dashboard')
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+ .action(async (_options: StatsOptions) => {
116
+ let config: Partial<BuildConfig> = {};
117
+ try {
118
+ config = loadBuildConfig('.') || {};
119
+ } catch {
120
+ // Not in a rev project, that's ok
121
+ }
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+ let sections = config.sections || [];
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+
124
+ if (sections.length === 0) {
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+ sections = fs.readdirSync('.').filter(f =>
126
+ f.endsWith('.md') && !['README.md', 'CLAUDE.md', 'paper.md'].includes(f)
127
+ );
128
+ }
129
+
130
+ let totalWords = 0;
131
+ let totalFigures = 0;
132
+ let totalTables = 0;
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+ let totalComments = 0;
134
+ let pendingComments = 0;
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+ const citations = new Set<string>();
136
+
137
+ for (const section of sections) {
138
+ if (!fs.existsSync(section)) continue;
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+ const text = fs.readFileSync(section, 'utf-8');
140
+
141
+ totalWords += countWords(text);
142
+ totalFigures += (text.match(/!\[.*?\]\(.*?\)/g) || []).length;
143
+ totalTables += (text.match(/^\|[^|]+\|/gm) || []).length / 5; // Approximate
144
+
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+ const comments = getComments(text);
146
+ totalComments += comments.length;
147
+ pendingComments += comments.filter(c => !c.resolved).length;
148
+
149
+ const cites = text.match(/@(\w+)(?![:\w])/g) || [];
150
+ cites.forEach(c => citations.add(c.slice(1)));
151
+ }
152
+
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+ console.log(fmt.header('Project Statistics'));
154
+ console.log();
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+
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+ const stats: [string, string | number][] = [
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+ ['Sections', sections.length],
158
+ ['Words', totalWords.toLocaleString()],
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+ ['Figures', Math.round(totalFigures)],
160
+ ['Tables', Math.round(totalTables)],
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+ ['Citations', citations.size],
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+ ['Comments', `${totalComments} (${pendingComments} pending)`],
163
+ ];
164
+
165
+ for (const [label, value] of stats) {
166
+ console.log(` ${chalk.dim(label.padEnd(12))} ${chalk.bold(value)}`);
167
+ }
168
+
169
+ // Bibliography stats
170
+ const bibPath = config.bibliography || 'references.bib';
171
+ if (fs.existsSync(bibPath)) {
172
+ const bibContent = fs.readFileSync(bibPath, 'utf-8');
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+ const bibEntries = (bibContent.match(/@\w+\s*\{/g) || []).length;
174
+ console.log(` ${chalk.dim('Bib entries'.padEnd(12))} ${chalk.bold(bibEntries)}`);
175
+ }
176
+
177
+ console.log();
178
+ });
179
+
180
+ // ==========================================================================
181
+ // SEARCH command - Search across section files
182
+ // ==========================================================================
183
+
184
+ program
185
+ .command('search')
186
+ .description('Search across all section files')
187
+ .argument('<query>', 'Search query (supports regex)')
188
+ .option('-i, --ignore-case', 'Case-insensitive search')
189
+ .option('-c, --context <lines>', 'Show context lines', parseInt, 1)
190
+ .action((query: string, options: SearchOptions) => {
191
+ let config: Partial<BuildConfig> = {};
192
+ try {
193
+ config = loadBuildConfig('.') || {};
194
+ } catch {
195
+ // Not in a rev project, that's ok
196
+ }
197
+ let sections = config.sections || [];
198
+
199
+ if (sections.length === 0) {
200
+ sections = fs.readdirSync('.').filter(f =>
201
+ f.endsWith('.md') && !['README.md', 'CLAUDE.md'].includes(f)
202
+ );
203
+ }
204
+
205
+ const flags = options.ignoreCase ? 'gi' : 'g';
206
+ let pattern: RegExp;
207
+ try {
208
+ pattern = new RegExp(query, flags);
209
+ } catch {
210
+ pattern = new RegExp(query.replace(/[.*+?^${}()|[\]\\]/g, '\\$&'), flags);
211
+ }
212
+
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+ let totalMatches = 0;
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+
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+ for (const section of sections) {
216
+ if (!fs.existsSync(section)) continue;
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+ const text = fs.readFileSync(section, 'utf-8');
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+ const lines = text.split('\n');
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+
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+ const matches: { line: number; text: string }[] = [];
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+ for (let i = 0; i < lines.length; i++) {
222
+ if (pattern.test(lines[i])) {
223
+ matches.push({ line: i + 1, text: lines[i] });
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+ pattern.lastIndex = 0;
225
+ }
226
+ }
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+
228
+ if (matches.length > 0) {
229
+ console.log(chalk.cyan.bold(`\n${section}`));
230
+ for (const match of matches) {
231
+ const highlighted = match.text.replace(pattern, (m) => chalk.yellow.bold(m));
232
+ console.log(` ${chalk.dim(match.line + ':')} ${highlighted}`);
233
+ }
234
+ totalMatches += matches.length;
235
+ }
236
+ }
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+
238
+ if (totalMatches === 0) {
239
+ console.log(chalk.yellow(`No matches found for "${query}"`));
240
+ } else {
241
+ console.log(chalk.dim(`\n${totalMatches} match${totalMatches === 1 ? '' : 'es'} found`));
242
+ }
243
+ });
244
+ }