docrev 0.10.1 → 0.10.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (119) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +184 -173
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +431 -431
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/anchor-match.d.ts +1 -1
  11. package/dist/lib/anchor-match.d.ts.map +1 -1
  12. package/dist/lib/anchor-match.js +47 -17
  13. package/dist/lib/anchor-match.js.map +1 -1
  14. package/dist/lib/build.js +4 -4
  15. package/dist/lib/commands/sync.d.ts.map +1 -1
  16. package/dist/lib/commands/sync.js +78 -100
  17. package/dist/lib/commands/sync.js.map +1 -1
  18. package/dist/lib/commands/utilities.js +164 -164
  19. package/dist/lib/commands/word-tools.js +8 -8
  20. package/dist/lib/grammar.js +3 -3
  21. package/dist/lib/macro-filter.lua +201 -201
  22. package/dist/lib/pdf-comments.js +44 -44
  23. package/dist/lib/plugins.js +57 -57
  24. package/dist/lib/pptx-color-filter.lua +37 -37
  25. package/dist/lib/pptx-themes.js +115 -115
  26. package/dist/lib/sections.d.ts.map +1 -1
  27. package/dist/lib/sections.js +5 -2
  28. package/dist/lib/sections.js.map +1 -1
  29. package/dist/lib/spelling.js +2 -2
  30. package/dist/lib/templates.js +387 -387
  31. package/dist/lib/themes.js +51 -51
  32. package/eslint.config.js +27 -27
  33. package/issues.md +180 -0
  34. package/lib/anchor-match.ts +308 -276
  35. package/lib/annotations.ts +644 -644
  36. package/lib/build.ts +1766 -1766
  37. package/lib/citations.ts +160 -160
  38. package/lib/commands/build.ts +855 -855
  39. package/lib/commands/citations.ts +515 -515
  40. package/lib/commands/comments.ts +1050 -1050
  41. package/lib/commands/context.ts +176 -176
  42. package/lib/commands/core.ts +309 -309
  43. package/lib/commands/doi.ts +435 -435
  44. package/lib/commands/file-ops.ts +372 -372
  45. package/lib/commands/history.ts +320 -320
  46. package/lib/commands/index.ts +87 -87
  47. package/lib/commands/init.ts +259 -259
  48. package/lib/commands/merge-resolve.ts +378 -378
  49. package/lib/commands/preview.ts +178 -178
  50. package/lib/commands/project-info.ts +244 -244
  51. package/lib/commands/quality.ts +517 -517
  52. package/lib/commands/response.ts +454 -454
  53. package/lib/commands/section-boundaries.ts +82 -82
  54. package/lib/commands/sections.ts +451 -451
  55. package/lib/commands/sync.ts +676 -709
  56. package/lib/commands/text-ops.ts +449 -449
  57. package/lib/commands/utilities.ts +448 -448
  58. package/lib/commands/verify-anchors.ts +272 -272
  59. package/lib/commands/word-tools.ts +340 -340
  60. package/lib/comment-realign.ts +517 -517
  61. package/lib/config.ts +84 -84
  62. package/lib/crossref.ts +781 -781
  63. package/lib/csl.ts +191 -191
  64. package/lib/dependencies.ts +98 -98
  65. package/lib/diff-engine.ts +465 -465
  66. package/lib/doi-cache.ts +115 -115
  67. package/lib/doi.ts +897 -897
  68. package/lib/equations.ts +506 -506
  69. package/lib/errors.ts +346 -346
  70. package/lib/format.ts +541 -541
  71. package/lib/git.ts +326 -326
  72. package/lib/grammar.ts +303 -303
  73. package/lib/image-registry.ts +180 -180
  74. package/lib/import.ts +911 -911
  75. package/lib/journals.ts +543 -543
  76. package/lib/macro-filter.lua +201 -201
  77. package/lib/macros.ts +273 -273
  78. package/lib/merge.ts +633 -633
  79. package/lib/orcid.ts +144 -144
  80. package/lib/pdf-comments.ts +263 -263
  81. package/lib/pdf-import.ts +524 -524
  82. package/lib/plugins.ts +362 -362
  83. package/lib/postprocess.ts +188 -188
  84. package/lib/pptx-color-filter.lua +37 -37
  85. package/lib/pptx-template.ts +469 -469
  86. package/lib/pptx-themes.ts +483 -483
  87. package/lib/protect-restore.ts +520 -520
  88. package/lib/rate-limiter.ts +94 -94
  89. package/lib/response.ts +197 -197
  90. package/lib/restore-references.ts +240 -240
  91. package/lib/review.ts +327 -327
  92. package/lib/schema.ts +488 -488
  93. package/lib/scientific-words.ts +73 -73
  94. package/lib/sections.ts +428 -425
  95. package/lib/slides.ts +756 -756
  96. package/lib/spelling.ts +334 -334
  97. package/lib/templates.ts +526 -526
  98. package/lib/themes.ts +742 -742
  99. package/lib/trackchanges.ts +247 -247
  100. package/lib/tui.ts +450 -450
  101. package/lib/types.ts +550 -550
  102. package/lib/undo.ts +250 -250
  103. package/lib/utils.ts +69 -69
  104. package/lib/variables.ts +179 -179
  105. package/lib/word-extraction.ts +806 -806
  106. package/lib/word.ts +643 -643
  107. package/lib/wordcomments.ts +840 -840
  108. package/package.json +137 -137
  109. package/scripts/postbuild.js +47 -47
  110. package/site/assets/extra.css +208 -0
  111. package/site/commands.html +926 -0
  112. package/site/configuration.html +469 -0
  113. package/site/index.html +288 -0
  114. package/site/troubleshooting.html +461 -0
  115. package/site/workflow.html +518 -0
  116. package/skill/REFERENCE.md +539 -539
  117. package/skill/SKILL.md +295 -295
  118. package/tsconfig.json +26 -26
  119. package/types/index.d.ts +525 -525
@@ -1,372 +1,372 @@
1
- /**
2
- * File operation commands: backup, archive, export, clean
3
- *
4
- * Commands that create, move, or delete project files.
5
- */
6
-
7
- import type { Command } from 'commander';
8
- import {
9
- chalk,
10
- fs,
11
- path,
12
- fmt,
13
- findFiles,
14
- loadBuildConfig,
15
- } from './context.js';
16
-
17
- // Use the actual BuildConfig from build.ts which allows string|Author[]
18
- type BuildConfig = ReturnType<typeof loadBuildConfig>;
19
-
20
- interface ZipLike {
21
- addLocalFile(localPath: string, zipPath?: string): void;
22
- }
23
-
24
- /**
25
- * Recursively add directory contents to a zip archive, filtering by predicate
26
- */
27
- function addDirToZip(
28
- zip: ZipLike,
29
- dir: string,
30
- shouldInclude: (name: string) => boolean,
31
- zipPath = '',
32
- ): void {
33
- const entries = fs.readdirSync(dir, { withFileTypes: true });
34
- for (const entry of entries) {
35
- const fullPath = path.join(dir, entry.name);
36
- const entryZipPath = path.join(zipPath, entry.name);
37
-
38
- if (!shouldInclude(entry.name)) continue;
39
-
40
- if (entry.isDirectory()) {
41
- addDirToZip(zip, fullPath, shouldInclude, entryZipPath);
42
- } else {
43
- zip.addLocalFile(fullPath, zipPath || undefined);
44
- }
45
- }
46
- }
47
-
48
- // Options interfaces
49
- interface BackupOptions {
50
- name?: string;
51
- output?: string;
52
- }
53
-
54
- interface ArchiveOptions {
55
- dir?: string;
56
- by?: string;
57
- rename?: boolean;
58
- dryRun?: boolean;
59
- }
60
-
61
- interface ExportOptions {
62
- output?: string;
63
- includeOutput?: boolean;
64
- }
65
-
66
- interface CleanOptions {
67
- dryRun?: boolean;
68
- all?: boolean;
69
- }
70
-
71
- /**
72
- * Register file-ops commands with the program
73
- */
74
- export function register(program: Command): void {
75
- // ==========================================================================
76
- // BACKUP command - Timestamped project backup
77
- // ==========================================================================
78
-
79
- program
80
- .command('backup')
81
- .description('Create timestamped project backup')
82
- .option('-n, --name <name>', 'Custom backup name')
83
- .option('-o, --output <dir>', 'Output directory', '.')
84
- .action(async (options: BackupOptions) => {
85
- const { default: AdmZip } = await import('adm-zip');
86
- const zip = new AdmZip();
87
-
88
- const date = new Date().toISOString().slice(0, 10);
89
- const name = options.name || `backup-${date}`;
90
- const outputPath = path.join(options.output || '.', `${name}.zip`);
91
-
92
- // Files to exclude
93
- const excludePatterns = [
94
- 'node_modules', '.git', '.DS_Store', '*.zip',
95
- 'paper.md' // Generated file
96
- ];
97
-
98
- const shouldInclude = (file: string): boolean => {
99
- for (const pattern of excludePatterns) {
100
- if (file.includes(pattern.replace('*', ''))) return false;
101
- }
102
- return true;
103
- };
104
-
105
- addDirToZip(zip, '.', shouldInclude);
106
-
107
- zip.writeZip(outputPath);
108
- console.log(fmt.status('success', `Backup created: ${outputPath}`));
109
- });
110
-
111
- // ==========================================================================
112
- // ARCHIVE command - Archive reviewer docx files
113
- // ==========================================================================
114
-
115
- program
116
- .command('archive')
117
- .description('Move reviewer .docx files to archive folder')
118
- .argument('[files...]', 'Specific files to archive (default: all .docx)')
119
- .option('-d, --dir <folder>', 'Archive folder name', 'archive')
120
- .option('--by <name>', 'Reviewer name (auto-detected if single commenter)')
121
- .option('--no-rename', 'Keep original filenames')
122
- .option('--dry-run', 'Preview without moving files')
123
- .action(async (files: string[] | undefined, options: ArchiveOptions) => {
124
- const { extractWordComments } = await import('../import.js');
125
- const { default: YAML } = await import('yaml');
126
-
127
- // Find docx files to archive
128
- let docxFiles = files && files.length > 0
129
- ? files.filter(f => f.endsWith('.docx') && fs.existsSync(f))
130
- : findFiles('.docx');
131
-
132
- // Exclude our own build outputs
133
- let projectSlug: string | null = null;
134
- const configPath = path.join(process.cwd(), 'rev.yaml');
135
- if (fs.existsSync(configPath)) {
136
- try {
137
- const config = YAML.parse(fs.readFileSync(configPath, 'utf-8'));
138
- if (config.title) {
139
- projectSlug = config.title
140
- .toLowerCase()
141
- .replace(/[^a-z0-9]+/g, '-')
142
- .replace(/^-|-$/g, '')
143
- .slice(0, 50);
144
- }
145
- } catch (e) {
146
- // Ignore config errors
147
- }
148
- }
149
-
150
- // Filter out build outputs
151
- if (projectSlug && (!files || files.length === 0)) {
152
- const buildPatterns = [
153
- `${projectSlug}.docx`,
154
- `${projectSlug}_comments.docx`,
155
- `${projectSlug}-changes.docx`,
156
- 'paper.docx',
157
- 'paper_comments.docx',
158
- 'paper-changes.docx',
159
- ];
160
- const excluded: string[] = [];
161
- docxFiles = docxFiles.filter(f => {
162
- const base = path.basename(f).toLowerCase();
163
- const isBuilt = buildPatterns.includes(base);
164
- if (isBuilt) excluded.push(f);
165
- return !isBuilt;
166
- });
167
- if (excluded.length > 0) {
168
- console.log(chalk.dim(` Skipping build outputs: ${excluded.join(', ')}`));
169
- console.log();
170
- }
171
- }
172
-
173
- if (docxFiles.length === 0) {
174
- console.log(fmt.status('info', 'No .docx files to archive.'));
175
- return;
176
- }
177
-
178
- const projectTitle = projectSlug;
179
-
180
- // Create archive folder
181
- const archiveDir = path.resolve(options.dir || 'archive');
182
- if (!options.dryRun && !fs.existsSync(archiveDir)) {
183
- fs.mkdirSync(archiveDir, { recursive: true });
184
- }
185
-
186
- console.log(fmt.header('Archive'));
187
- console.log();
188
-
189
- const moved: string[] = [];
190
- for (const file of docxFiles) {
191
- const stat = fs.statSync(file);
192
- const mtime = stat.mtime;
193
- const timestamp = mtime.toISOString().slice(0, 19).replace(/[-:]/g, '').replace('T', '_');
194
-
195
- // Determine reviewer name
196
- let reviewer: string | null = options.by || null;
197
- if (!reviewer && options.rename !== false) {
198
- try {
199
- const comments = await extractWordComments(file);
200
- const authors = [...new Set(comments.map(c => c.author).filter(a => a && a !== 'Unknown'))];
201
- if (authors.length === 1) {
202
- reviewer = authors[0].replace(/[^a-zA-Z0-9]/g, '-').replace(/^-|-$/g, '');
203
- }
204
- } catch (e) {
205
- // Ignore extraction errors
206
- }
207
- }
208
-
209
- // Generate new name
210
- let newName: string;
211
- if (options.rename === false) {
212
- newName = path.basename(file);
213
- } else {
214
- const base = path.basename(file, '.docx');
215
- if (/^\d{8}_\d{6}_/.test(base)) {
216
- newName = path.basename(file);
217
- } else {
218
- const namePart = projectTitle || base;
219
- if (reviewer) {
220
- newName = `${timestamp}_${reviewer}_${namePart}.docx`;
221
- } else {
222
- newName = `${timestamp}_${namePart}.docx`;
223
- }
224
- }
225
- }
226
-
227
- const destPath = path.join(archiveDir, newName);
228
-
229
- if (options.dryRun) {
230
- console.log(` ${chalk.dim(file)} → ${chalk.cyan(path.join(options.dir || 'archive', newName))}`);
231
- } else {
232
- // Handle name collision
233
- let finalPath = destPath;
234
- let counter = 1;
235
- while (fs.existsSync(finalPath)) {
236
- const ext = path.extname(newName);
237
- const base = path.basename(newName, ext);
238
- finalPath = path.join(archiveDir, `${base}_${counter}${ext}`);
239
- counter++;
240
- }
241
- fs.renameSync(file, finalPath);
242
- console.log(` ${chalk.dim(file)} → ${chalk.green(path.relative(process.cwd(), finalPath))}`);
243
- }
244
- moved.push(file);
245
- }
246
-
247
- console.log();
248
- if (options.dryRun) {
249
- console.log(fmt.status('info', `Would archive ${moved.length} file(s). Run without --dry-run to proceed.`));
250
- } else {
251
- console.log(fmt.status('success', `Archived ${moved.length} file(s) to ${options.dir || 'archive'}/`));
252
- }
253
- });
254
-
255
- // ==========================================================================
256
- // EXPORT command - Export project as distributable zip
257
- // ==========================================================================
258
-
259
- program
260
- .command('export')
261
- .description('Export project as distributable zip')
262
- .option('-o, --output <file>', 'Output filename')
263
- .option('--include-output', 'Include built PDF/DOCX files')
264
- .action(async (options: ExportOptions) => {
265
- const { default: AdmZip } = await import('adm-zip');
266
- const { build } = await import('../build.js');
267
-
268
- let config: Partial<BuildConfig> = {};
269
- try {
270
- config = loadBuildConfig('.') || {};
271
- } catch {
272
- // Not in a rev project, that's ok
273
- }
274
-
275
- // Build first if including output
276
- if (options.includeOutput) {
277
- console.log(chalk.dim('Building documents...'));
278
- await build('.', ['pdf', 'docx']);
279
- }
280
-
281
- const zip = new AdmZip();
282
- const projectName = config.title?.replace(/[^a-zA-Z0-9]/g, '-').toLowerCase() || 'project';
283
- const outputPath = options.output || `${projectName}-export.zip`;
284
-
285
- const exclude = ['node_modules', '.git', '.DS_Store', '*.zip'];
286
-
287
- const shouldInclude = (name: string): boolean => {
288
- if (!options.includeOutput && (name.endsWith('.pdf') || name.endsWith('.docx'))) {
289
- return false;
290
- }
291
- for (const pattern of exclude) {
292
- if (name === pattern || name.includes(pattern.replace('*', ''))) return false;
293
- }
294
- return true;
295
- };
296
-
297
- addDirToZip(zip, '.', shouldInclude);
298
-
299
- zip.writeZip(outputPath);
300
- console.log(fmt.status('success', `Exported: ${outputPath}`));
301
- });
302
-
303
- // ==========================================================================
304
- // CLEAN command - Remove generated files
305
- // ==========================================================================
306
-
307
- program
308
- .command('clean')
309
- .description('Remove generated files (paper.md, PDFs, DOCXs)')
310
- .option('-n, --dry-run', 'Show what would be deleted without deleting')
311
- .option('--all', 'Also remove backup and export zips')
312
- .action((options: CleanOptions) => {
313
- let config: Partial<BuildConfig> = {};
314
- try {
315
- config = loadBuildConfig('.') || {};
316
- } catch {
317
- // Not in a rev project, that's ok
318
- }
319
-
320
- const projectName = config.title?.toLowerCase().replace(/\s+/g, '-') || 'paper';
321
-
322
- // Files to clean
323
- const patterns = [
324
- 'paper.md',
325
- '*.pdf',
326
- `${projectName}.docx`,
327
- `${projectName}.pdf`,
328
- `${projectName}.tex`,
329
- '.paper-*.md', // Temp build files
330
- ];
331
-
332
- if (options.all) {
333
- patterns.push('*.zip', 'backup-*.zip', '*-export.zip');
334
- }
335
-
336
- const toDelete: string[] = [];
337
-
338
- for (const pattern of patterns) {
339
- if (pattern.includes('*')) {
340
- const regex = new RegExp('^' + pattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
341
- const files = fs.readdirSync('.').filter(f => regex.test(f));
342
- toDelete.push(...files);
343
- } else if (fs.existsSync(pattern)) {
344
- toDelete.push(pattern);
345
- }
346
- }
347
-
348
- if (toDelete.length === 0) {
349
- console.log(chalk.dim('No generated files to clean.'));
350
- return;
351
- }
352
-
353
- console.log(fmt.header('Clean'));
354
- console.log();
355
-
356
- for (const file of toDelete) {
357
- if (options.dryRun) {
358
- console.log(chalk.dim(` Would delete: ${file}`));
359
- } else {
360
- fs.unlinkSync(file);
361
- console.log(chalk.red(` Deleted: ${file}`));
362
- }
363
- }
364
-
365
- console.log();
366
- if (options.dryRun) {
367
- console.log(chalk.dim(`Would delete ${toDelete.length} file(s). Run without --dry-run to delete.`));
368
- } else {
369
- console.log(fmt.status('success', `Cleaned ${toDelete.length} file(s)`));
370
- }
371
- });
372
- }
1
+ /**
2
+ * File operation commands: backup, archive, export, clean
3
+ *
4
+ * Commands that create, move, or delete project files.
5
+ */
6
+
7
+ import type { Command } from 'commander';
8
+ import {
9
+ chalk,
10
+ fs,
11
+ path,
12
+ fmt,
13
+ findFiles,
14
+ loadBuildConfig,
15
+ } from './context.js';
16
+
17
+ // Use the actual BuildConfig from build.ts which allows string|Author[]
18
+ type BuildConfig = ReturnType<typeof loadBuildConfig>;
19
+
20
+ interface ZipLike {
21
+ addLocalFile(localPath: string, zipPath?: string): void;
22
+ }
23
+
24
+ /**
25
+ * Recursively add directory contents to a zip archive, filtering by predicate
26
+ */
27
+ function addDirToZip(
28
+ zip: ZipLike,
29
+ dir: string,
30
+ shouldInclude: (name: string) => boolean,
31
+ zipPath = '',
32
+ ): void {
33
+ const entries = fs.readdirSync(dir, { withFileTypes: true });
34
+ for (const entry of entries) {
35
+ const fullPath = path.join(dir, entry.name);
36
+ const entryZipPath = path.join(zipPath, entry.name);
37
+
38
+ if (!shouldInclude(entry.name)) continue;
39
+
40
+ if (entry.isDirectory()) {
41
+ addDirToZip(zip, fullPath, shouldInclude, entryZipPath);
42
+ } else {
43
+ zip.addLocalFile(fullPath, zipPath || undefined);
44
+ }
45
+ }
46
+ }
47
+
48
+ // Options interfaces
49
+ interface BackupOptions {
50
+ name?: string;
51
+ output?: string;
52
+ }
53
+
54
+ interface ArchiveOptions {
55
+ dir?: string;
56
+ by?: string;
57
+ rename?: boolean;
58
+ dryRun?: boolean;
59
+ }
60
+
61
+ interface ExportOptions {
62
+ output?: string;
63
+ includeOutput?: boolean;
64
+ }
65
+
66
+ interface CleanOptions {
67
+ dryRun?: boolean;
68
+ all?: boolean;
69
+ }
70
+
71
+ /**
72
+ * Register file-ops commands with the program
73
+ */
74
+ export function register(program: Command): void {
75
+ // ==========================================================================
76
+ // BACKUP command - Timestamped project backup
77
+ // ==========================================================================
78
+
79
+ program
80
+ .command('backup')
81
+ .description('Create timestamped project backup')
82
+ .option('-n, --name <name>', 'Custom backup name')
83
+ .option('-o, --output <dir>', 'Output directory', '.')
84
+ .action(async (options: BackupOptions) => {
85
+ const { default: AdmZip } = await import('adm-zip');
86
+ const zip = new AdmZip();
87
+
88
+ const date = new Date().toISOString().slice(0, 10);
89
+ const name = options.name || `backup-${date}`;
90
+ const outputPath = path.join(options.output || '.', `${name}.zip`);
91
+
92
+ // Files to exclude
93
+ const excludePatterns = [
94
+ 'node_modules', '.git', '.DS_Store', '*.zip',
95
+ 'paper.md' // Generated file
96
+ ];
97
+
98
+ const shouldInclude = (file: string): boolean => {
99
+ for (const pattern of excludePatterns) {
100
+ if (file.includes(pattern.replace('*', ''))) return false;
101
+ }
102
+ return true;
103
+ };
104
+
105
+ addDirToZip(zip, '.', shouldInclude);
106
+
107
+ zip.writeZip(outputPath);
108
+ console.log(fmt.status('success', `Backup created: ${outputPath}`));
109
+ });
110
+
111
+ // ==========================================================================
112
+ // ARCHIVE command - Archive reviewer docx files
113
+ // ==========================================================================
114
+
115
+ program
116
+ .command('archive')
117
+ .description('Move reviewer .docx files to archive folder')
118
+ .argument('[files...]', 'Specific files to archive (default: all .docx)')
119
+ .option('-d, --dir <folder>', 'Archive folder name', 'archive')
120
+ .option('--by <name>', 'Reviewer name (auto-detected if single commenter)')
121
+ .option('--no-rename', 'Keep original filenames')
122
+ .option('--dry-run', 'Preview without moving files')
123
+ .action(async (files: string[] | undefined, options: ArchiveOptions) => {
124
+ const { extractWordComments } = await import('../import.js');
125
+ const { default: YAML } = await import('yaml');
126
+
127
+ // Find docx files to archive
128
+ let docxFiles = files && files.length > 0
129
+ ? files.filter(f => f.endsWith('.docx') && fs.existsSync(f))
130
+ : findFiles('.docx');
131
+
132
+ // Exclude our own build outputs
133
+ let projectSlug: string | null = null;
134
+ const configPath = path.join(process.cwd(), 'rev.yaml');
135
+ if (fs.existsSync(configPath)) {
136
+ try {
137
+ const config = YAML.parse(fs.readFileSync(configPath, 'utf-8'));
138
+ if (config.title) {
139
+ projectSlug = config.title
140
+ .toLowerCase()
141
+ .replace(/[^a-z0-9]+/g, '-')
142
+ .replace(/^-|-$/g, '')
143
+ .slice(0, 50);
144
+ }
145
+ } catch (e) {
146
+ // Ignore config errors
147
+ }
148
+ }
149
+
150
+ // Filter out build outputs
151
+ if (projectSlug && (!files || files.length === 0)) {
152
+ const buildPatterns = [
153
+ `${projectSlug}.docx`,
154
+ `${projectSlug}_comments.docx`,
155
+ `${projectSlug}-changes.docx`,
156
+ 'paper.docx',
157
+ 'paper_comments.docx',
158
+ 'paper-changes.docx',
159
+ ];
160
+ const excluded: string[] = [];
161
+ docxFiles = docxFiles.filter(f => {
162
+ const base = path.basename(f).toLowerCase();
163
+ const isBuilt = buildPatterns.includes(base);
164
+ if (isBuilt) excluded.push(f);
165
+ return !isBuilt;
166
+ });
167
+ if (excluded.length > 0) {
168
+ console.log(chalk.dim(` Skipping build outputs: ${excluded.join(', ')}`));
169
+ console.log();
170
+ }
171
+ }
172
+
173
+ if (docxFiles.length === 0) {
174
+ console.log(fmt.status('info', 'No .docx files to archive.'));
175
+ return;
176
+ }
177
+
178
+ const projectTitle = projectSlug;
179
+
180
+ // Create archive folder
181
+ const archiveDir = path.resolve(options.dir || 'archive');
182
+ if (!options.dryRun && !fs.existsSync(archiveDir)) {
183
+ fs.mkdirSync(archiveDir, { recursive: true });
184
+ }
185
+
186
+ console.log(fmt.header('Archive'));
187
+ console.log();
188
+
189
+ const moved: string[] = [];
190
+ for (const file of docxFiles) {
191
+ const stat = fs.statSync(file);
192
+ const mtime = stat.mtime;
193
+ const timestamp = mtime.toISOString().slice(0, 19).replace(/[-:]/g, '').replace('T', '_');
194
+
195
+ // Determine reviewer name
196
+ let reviewer: string | null = options.by || null;
197
+ if (!reviewer && options.rename !== false) {
198
+ try {
199
+ const comments = await extractWordComments(file);
200
+ const authors = [...new Set(comments.map(c => c.author).filter(a => a && a !== 'Unknown'))];
201
+ if (authors.length === 1) {
202
+ reviewer = authors[0].replace(/[^a-zA-Z0-9]/g, '-').replace(/^-|-$/g, '');
203
+ }
204
+ } catch (e) {
205
+ // Ignore extraction errors
206
+ }
207
+ }
208
+
209
+ // Generate new name
210
+ let newName: string;
211
+ if (options.rename === false) {
212
+ newName = path.basename(file);
213
+ } else {
214
+ const base = path.basename(file, '.docx');
215
+ if (/^\d{8}_\d{6}_/.test(base)) {
216
+ newName = path.basename(file);
217
+ } else {
218
+ const namePart = projectTitle || base;
219
+ if (reviewer) {
220
+ newName = `${timestamp}_${reviewer}_${namePart}.docx`;
221
+ } else {
222
+ newName = `${timestamp}_${namePart}.docx`;
223
+ }
224
+ }
225
+ }
226
+
227
+ const destPath = path.join(archiveDir, newName);
228
+
229
+ if (options.dryRun) {
230
+ console.log(` ${chalk.dim(file)} → ${chalk.cyan(path.join(options.dir || 'archive', newName))}`);
231
+ } else {
232
+ // Handle name collision
233
+ let finalPath = destPath;
234
+ let counter = 1;
235
+ while (fs.existsSync(finalPath)) {
236
+ const ext = path.extname(newName);
237
+ const base = path.basename(newName, ext);
238
+ finalPath = path.join(archiveDir, `${base}_${counter}${ext}`);
239
+ counter++;
240
+ }
241
+ fs.renameSync(file, finalPath);
242
+ console.log(` ${chalk.dim(file)} → ${chalk.green(path.relative(process.cwd(), finalPath))}`);
243
+ }
244
+ moved.push(file);
245
+ }
246
+
247
+ console.log();
248
+ if (options.dryRun) {
249
+ console.log(fmt.status('info', `Would archive ${moved.length} file(s). Run without --dry-run to proceed.`));
250
+ } else {
251
+ console.log(fmt.status('success', `Archived ${moved.length} file(s) to ${options.dir || 'archive'}/`));
252
+ }
253
+ });
254
+
255
+ // ==========================================================================
256
+ // EXPORT command - Export project as distributable zip
257
+ // ==========================================================================
258
+
259
+ program
260
+ .command('export')
261
+ .description('Export project as distributable zip')
262
+ .option('-o, --output <file>', 'Output filename')
263
+ .option('--include-output', 'Include built PDF/DOCX files')
264
+ .action(async (options: ExportOptions) => {
265
+ const { default: AdmZip } = await import('adm-zip');
266
+ const { build } = await import('../build.js');
267
+
268
+ let config: Partial<BuildConfig> = {};
269
+ try {
270
+ config = loadBuildConfig('.') || {};
271
+ } catch {
272
+ // Not in a rev project, that's ok
273
+ }
274
+
275
+ // Build first if including output
276
+ if (options.includeOutput) {
277
+ console.log(chalk.dim('Building documents...'));
278
+ await build('.', ['pdf', 'docx']);
279
+ }
280
+
281
+ const zip = new AdmZip();
282
+ const projectName = config.title?.replace(/[^a-zA-Z0-9]/g, '-').toLowerCase() || 'project';
283
+ const outputPath = options.output || `${projectName}-export.zip`;
284
+
285
+ const exclude = ['node_modules', '.git', '.DS_Store', '*.zip'];
286
+
287
+ const shouldInclude = (name: string): boolean => {
288
+ if (!options.includeOutput && (name.endsWith('.pdf') || name.endsWith('.docx'))) {
289
+ return false;
290
+ }
291
+ for (const pattern of exclude) {
292
+ if (name === pattern || name.includes(pattern.replace('*', ''))) return false;
293
+ }
294
+ return true;
295
+ };
296
+
297
+ addDirToZip(zip, '.', shouldInclude);
298
+
299
+ zip.writeZip(outputPath);
300
+ console.log(fmt.status('success', `Exported: ${outputPath}`));
301
+ });
302
+
303
+ // ==========================================================================
304
+ // CLEAN command - Remove generated files
305
+ // ==========================================================================
306
+
307
+ program
308
+ .command('clean')
309
+ .description('Remove generated files (paper.md, PDFs, DOCXs)')
310
+ .option('-n, --dry-run', 'Show what would be deleted without deleting')
311
+ .option('--all', 'Also remove backup and export zips')
312
+ .action((options: CleanOptions) => {
313
+ let config: Partial<BuildConfig> = {};
314
+ try {
315
+ config = loadBuildConfig('.') || {};
316
+ } catch {
317
+ // Not in a rev project, that's ok
318
+ }
319
+
320
+ const projectName = config.title?.toLowerCase().replace(/\s+/g, '-') || 'paper';
321
+
322
+ // Files to clean
323
+ const patterns = [
324
+ 'paper.md',
325
+ '*.pdf',
326
+ `${projectName}.docx`,
327
+ `${projectName}.pdf`,
328
+ `${projectName}.tex`,
329
+ '.paper-*.md', // Temp build files
330
+ ];
331
+
332
+ if (options.all) {
333
+ patterns.push('*.zip', 'backup-*.zip', '*-export.zip');
334
+ }
335
+
336
+ const toDelete: string[] = [];
337
+
338
+ for (const pattern of patterns) {
339
+ if (pattern.includes('*')) {
340
+ const regex = new RegExp('^' + pattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
341
+ const files = fs.readdirSync('.').filter(f => regex.test(f));
342
+ toDelete.push(...files);
343
+ } else if (fs.existsSync(pattern)) {
344
+ toDelete.push(pattern);
345
+ }
346
+ }
347
+
348
+ if (toDelete.length === 0) {
349
+ console.log(chalk.dim('No generated files to clean.'));
350
+ return;
351
+ }
352
+
353
+ console.log(fmt.header('Clean'));
354
+ console.log();
355
+
356
+ for (const file of toDelete) {
357
+ if (options.dryRun) {
358
+ console.log(chalk.dim(` Would delete: ${file}`));
359
+ } else {
360
+ fs.unlinkSync(file);
361
+ console.log(chalk.red(` Deleted: ${file}`));
362
+ }
363
+ }
364
+
365
+ console.log();
366
+ if (options.dryRun) {
367
+ console.log(chalk.dim(`Would delete ${toDelete.length} file(s). Run without --dry-run to delete.`));
368
+ } else {
369
+ console.log(fmt.status('success', `Cleaned ${toDelete.length} file(s)`));
370
+ }
371
+ });
372
+ }