directory-indexer 0.1.3 → 0.1.4

package/README.md

@@ -34,11 +34,12 @@ docker run -d --name ollama -p 127.0.0.1:11434:11434 -v ollama:/root/.ollama oll
 # Pull the embedding model
 docker exec ollama ollama pull nomic-embed-text
 ```
+**Note:** Make sure the embedding model is pulled before you start indexing. 
 
 **3. Index your directories**
 
 ```bash
-npx directory-indexer@latest index ~/Documents ~/Projects
+npx directory-indexer@latest index ./WorkNotes ./Projects
 ```
 
 **4. Configure AI assistant** _(Claude Desktop, Cursor, Cline, Roo Code, Zed etc.)_
@@ -56,6 +57,23 @@ Add to your MCP configuration:
 }
 ```
 
+If you experience issues on windows adding this MCP. You can install the package globally using
+```
+npm install -g directory-indexer@latest
+```
+
+Then use the following MCP configuration
+```
+{
+  "mcpServers": {
+    "directory-indexer": {
+      "command": "directory-indexer",
+      "args": [ "serve" ]
+    }
+  }
+}
+```
+
 Your AI assistant will automatically start the MCP server and can now search your indexed files.
 
 **Advanced:** For organizing content into focused search areas, see [Workspace Support](#workspace-support).

package/dist/cli.js

@@ -430,6 +430,113 @@ async function startMcpServer(config) {
     console.error("MCP server started successfully");
   }
 }
+class PrerequisiteError extends Error {
+  constructor(message, cause) {
+    super(message);
+    this.cause = cause;
+    this.name = "PrerequisiteError";
+  }
+}
+async function checkQdrant(config) {
+  try {
+    const response = await fetch(`${config.storage.qdrantEndpoint}/healthz`);
+    return response.ok;
+  } catch {
+    return false;
+  }
+}
+async function checkOllama(config) {
+  try {
+    const response = await fetch(`${config.embedding.endpoint}/api/tags`);
+    return response.ok;
+  } catch {
+    return false;
+  }
+}
+async function checkOllamaModel(config) {
+  try {
+    const response = await fetch(`${config.embedding.endpoint}/api/tags`);
+    if (!response.ok) return false;
+    const data = await response.json();
+    const models = data.models || [];
+    return models.some((model) => model.name.includes(config.embedding.model));
+  } catch {
+    return false;
+  }
+}
+async function checkOpenAI(config) {
+  if (!process.env.OPENAI_API_KEY) return false;
+  try {
+    const response = await fetch("https://api.openai.com/v1/embeddings", {
+      method: "POST",
+      headers: {
+        "Content-Type": "application/json",
+        "Authorization": `Bearer ${process.env.OPENAI_API_KEY}`
+      },
+      body: JSON.stringify({
+        model: config.embedding.model,
+        input: "test"
+      })
+    });
+    return response.ok;
+  } catch {
+    return false;
+  }
+}
+function createErrorMessage(qdrantOk, embeddingOk, provider) {
+  const errors = [];
+  if (!qdrantOk) {
+    errors.push("Qdrant database is inaccessible");
+  }
+  if (!embeddingOk) {
+    if (provider === "ollama") {
+      errors.push("Ollama embedding service is inaccessible or model unavailable");
+    } else if (provider === "openai") {
+      errors.push("OpenAI API is inaccessible or key invalid");
+    }
+  }
+  errors.push("");
+  errors.push("For setup instructions, see: https://github.com/peteretelej/directory-indexer#setup");
+  return errors.join("\n");
+}
+async function validateIndexPrerequisites(config) {
+  const [qdrantOk, embeddingOk] = await Promise.all([
+    checkQdrant(config),
+    checkEmbeddingService(config)
+  ]);
+  if (!qdrantOk || !embeddingOk) {
+    throw new PrerequisiteError(createErrorMessage(qdrantOk, embeddingOk, config.embedding.provider));
+  }
+}
+async function validateSearchPrerequisites(config) {
+  const qdrantOk = await checkQdrant(config);
+  if (!qdrantOk) {
+    throw new PrerequisiteError(createErrorMessage(false, true, config.embedding.provider));
+  }
+}
+async function checkEmbeddingService(config) {
+  switch (config.embedding.provider) {
+    case "ollama":
+      return await checkOllama(config) && await checkOllamaModel(config);
+    case "openai":
+      return await checkOpenAI(config);
+    case "mock":
+      return true;
+    default:
+      return false;
+  }
+}
+async function getServiceStatus(config) {
+  const [qdrantOk, embeddingOk] = await Promise.all([
+    checkQdrant(config),
+    checkEmbeddingService(config)
+  ]);
+  return {
+    qdrant: qdrantOk,
+    embedding: embeddingOk,
+    embeddingProvider: config.embedding.provider
+  };
+}
 const __dirname = dirname(fileURLToPath(import.meta.url));
 const packageJsonPath = join(__dirname, "../package.json");
 const packageJson = JSON.parse(readFileSync(packageJsonPath, "utf-8"));
@@ -440,6 +547,7 @@ async function main() {
   program.command("index").description("Index directories for semantic search").argument("<paths...>", "Directory paths to index").option("-v, --verbose", "Enable verbose logging").action(async (paths, options) => {
     try {
       const config = await loadConfig({ verbose: options.verbose });
+      await validateIndexPrerequisites(config);
       console.log(`Indexing ${paths.length} ${paths.length === 1 ? "directory" : "directories"}: ${paths.join(", ")}`);
       const result = await indexDirectories(paths, config);
       console.log(`Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.failed} failed`);
@@ -457,7 +565,8 @@ async function main() {
   });
   program.command("search").description("Search indexed content semantically").argument("<query>", "Search query").option("-l, --limit <number>", "Maximum number of results", "10").option("-c, --show-chunks", "Show individual chunk scores and IDs").option("-v, --verbose", "Enable verbose logging").action(async (query, options) => {
     try {
-      await loadConfig({ verbose: options.verbose });
+      const config = await loadConfig({ verbose: options.verbose });
+      await validateSearchPrerequisites(config);
       const results = await searchContent(query, { limit: parseInt(options.limit) });
       if (results.length === 0) {
         console.log("No results found");
@@ -483,7 +592,8 @@ async function main() {
   });
   program.command("similar").description("Find files similar to a given file").argument("<file>", "File path to find similar files for").option("-l, --limit <number>", "Maximum number of results", "10").option("-v, --verbose", "Enable verbose logging").action(async (filePath, options) => {
     try {
-      await loadConfig({ verbose: options.verbose });
+      const config = await loadConfig({ verbose: options.verbose });
+      await validateSearchPrerequisites(config);
       const results = await findSimilarFiles(filePath, parseInt(options.limit));
       if (results.length === 0) {
         console.log("No similar files found");
@@ -522,11 +632,18 @@ async function main() {
   });
   program.command("status").description("Show indexing status").option("-v, --verbose", "Enable verbose logging").action(async (options) => {
     try {
-      await loadConfig({ verbose: options.verbose });
-      const status = await getIndexStatus();
+      const config = await loadConfig({ verbose: options.verbose });
+      const [status, serviceStatus] = await Promise.all([
+        getIndexStatus(),
+        getServiceStatus(config)
+      ]);
       console.log("Directory Indexer Status Report");
       console.log("=====================================");
       console.log("");
+      console.log("SERVICE STATUS:");
+      console.log(`  • Qdrant database: ${serviceStatus.qdrant ? "Connected" : "Disconnected"}`);
+      console.log(`  • Embedding service (${serviceStatus.embeddingProvider}): ${serviceStatus.embedding ? "Connected" : "Disconnected"}`);
+      console.log("");
       console.log("OVERVIEW:");
       console.log(`  • ${status.directoriesIndexed} directories have been indexed`);
       console.log(`  • ${status.filesIndexed} files processed for semantic search`);
@@ -574,7 +691,7 @@ async function main() {
           console.log(`  • ${issue}`);
         });
         console.log("");
-        console.log("ℹ️  Note: Status messages above may be normal during setup or active indexing.");
+        console.log("Note: Status messages above may be normal during setup or active indexing.");
       } else {
         console.log("");
         console.log("SYSTEM STATUS:");

package/dist/cli.js.map

@@ -1 +1 @@
-{"version":3,"file":"cli.js","sources":["../src/mcp-handlers.ts","../src/mcp.ts","../src/cli.ts"],"sourcesContent":["import { Config } from './config.js';\nimport { indexDirectories } from './indexing.js';\nimport { searchContent, findSimilarFiles, getFileContent, getChunkContent } from './search.js';\nimport { getIndexStatus } from './storage.js';\nimport { CallToolResult } from '@modelcontextprotocol/sdk/types.js';\n\n// Type-safe interfaces for MCP tool arguments\ninterface IndexToolArgs {\n  directory_path: string;\n}\n\ninterface SearchToolArgs {\n  query: string;\n  limit?: number;\n  workspace?: string;\n}\n\ninterface SimilarFilesToolArgs {\n  file_path: string;\n  limit?: number;\n  workspace?: string;\n}\n\ninterface GetContentToolArgs {\n  file_path: string;\n  chunks?: string;\n}\n\ninterface GetChunkToolArgs {\n  file_path: string;\n  chunk_id: string;\n}\n\n// Type guard functions\nfunction isIndexToolArgs(args: unknown): args is IndexToolArgs {\n  return typeof args === 'object' && args !== null && \n         typeof (args as IndexToolArgs).directory_path === 'string';\n}\n\nfunction isSearchToolArgs(args: unknown): args is SearchToolArgs {\n  return typeof args === 'object' && args !== null && \n         typeof (args as SearchToolArgs).query === 'string';\n}\n\nfunction isSimilarFilesToolArgs(args: unknown): args is SimilarFilesToolArgs {\n  return typeof args === 'object' && args !== null && \n         typeof (args as SimilarFilesToolArgs).file_path === 'string';\n}\n\nfunction isGetContentToolArgs(args: unknown): args is GetContentToolArgs {\n  return typeof args === 'object' && args !== null && \n         typeof (args as GetContentToolArgs).file_path === 'string';\n}\n\nfunction isGetChunkToolArgs(args: unknown): args is GetChunkToolArgs {\n  return typeof args === 'object' && args !== null && \n         typeof (args as GetChunkToolArgs).file_path === 'string' &&\n         typeof (args as GetChunkToolArgs).chunk_id === 'string';\n}\n\nexport async function handleIndexTool(args: unknown, config: Config): Promise<CallToolResult> {\n  if (!isIndexToolArgs(args)) {\n    throw new Error('directory_path is required');\n  }\n  \n  const paths = args.directory_path.split(',').map((p: string) => p.trim());\n  const result = await indexDirectories(paths, config);\n  \n  let responseText = `Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.failed} failed`;\n  \n  if (result.errors.length > 0) {\n    responseText += `\\nErrors: [\\n`;\n    result.errors.forEach(error => {\n      responseText += `  '${error}'\\n`;\n    });\n    responseText += `]`;\n  }\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: responseText\n      }\n    ]\n  };\n}\n\nasync function validateWorkspace(workspace?: string): Promise<{ workspace?: string; message?: string }> {\n  if (!workspace) return { workspace };\n  \n  const config = (await import('./config.js')).loadConfig();\n  const { getAvailableWorkspaces } = await import('./config.js');\n  const availableWorkspaces = getAvailableWorkspaces(config);\n  \n  if (availableWorkspaces.includes(workspace)) {\n    return { workspace };\n  }\n  \n  // Invalid workspace - search all content with informative message\n  const message = availableWorkspaces.length > 0\n    ? `Note: Workspace '${workspace}' not found. Searching all content instead. Available workspaces: ${availableWorkspaces.join(', ')}. Use server_info tool to see workspace details.`\n    : `Note: Workspace '${workspace}' not found and no workspaces are configured. Searching all indexed content.`;\n  \n  return { workspace: undefined, message };\n}\n\nexport async function handleSearchTool(args: unknown): Promise<CallToolResult> {\n  if (!isSearchToolArgs(args)) {\n    throw new Error('query is required');\n  }\n  \n  const { workspace, message } = await validateWorkspace(args.workspace);\n  const results = await searchContent(args.query, { limit: args.limit || 10, workspace });\n  \n  const response = message \n    ? `${message}\\n\\n${JSON.stringify(results, null, 2)}`\n    : JSON.stringify(results, null, 2);\n  \n  return {\n    content: [{ type: 'text', text: response }]\n  };\n}\n\nexport async function handleSimilarFilesTool(args: unknown): Promise<CallToolResult> {\n  if (!isSimilarFilesToolArgs(args)) {\n    throw new Error('file_path is required');\n  }\n  \n  const { workspace, message } = await validateWorkspace(args.workspace);\n  const results = await findSimilarFiles(args.file_path, args.limit || 10, workspace);\n  \n  const response = message \n    ? `${message}\\n\\n${JSON.stringify(results, null, 2)}`\n    : JSON.stringify(results, null, 2);\n  \n  return {\n    content: [{ type: 'text', text: response }]\n  };\n}\n\nexport async function handleGetContentTool(args: unknown): Promise<CallToolResult> {\n  if (!isGetContentToolArgs(args)) {\n    throw new Error('file_path is required');\n  }\n  \n  const content = await getFileContent(args.file_path, args.chunks);\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: content\n      }\n    ]\n  };\n}\n\nexport async function handleGetChunkTool(args: unknown): Promise<CallToolResult> {\n  if (!isGetChunkToolArgs(args)) {\n    throw new Error('file_path and chunk_id are required');\n  }\n  \n  const content = await getChunkContent(args.file_path, args.chunk_id);\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: content\n      }\n    ]\n  };\n}\n\nexport async function handleServerInfoTool(version: string): Promise<CallToolResult> {\n  const status = await getIndexStatus();\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: JSON.stringify({\n          name: 'directory-indexer',\n          version: version,\n          status: status\n        }, null, 2)\n      }\n    ]\n  };\n}\n\nexport function formatErrorResponse(error: unknown): CallToolResult {\n  const errorMessage = error instanceof Error ? error.message : 'Unknown error';\n  return {\n    content: [\n      {\n        type: 'text',\n        text: `Error: ${errorMessage}`\n      }\n    ],\n    isError: true\n  };\n}","import { Server } from '@modelcontextprotocol/sdk/server/index.js';\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';\nimport { \n  CallToolRequestSchema, \n  ListToolsRequestSchema,\n  Tool\n} from '@modelcontextprotocol/sdk/types.js';\nimport { readFileSync } from 'fs';\nimport { join, dirname } from 'path';\nimport { fileURLToPath } from 'url';\nimport { Config } from './config.js';\nimport { \n  handleIndexTool, \n  handleSearchTool, \n  handleSimilarFilesTool, \n  handleGetContentTool, \n  handleGetChunkTool, \n  handleServerInfoTool,\n  formatErrorResponse\n} from './mcp-handlers.js';\n\n// Read version from package.json\nconst __dirname = dirname(fileURLToPath(import.meta.url));\nconst packageJsonPath = join(__dirname, '../package.json');\nconst packageJson = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));\nconst VERSION = packageJson.version;\n\nconst MCP_TOOLS: Tool[] = [\n  {\n    name: 'index',\n    description: `Index directories to make their files searchable. Processes files to create vector embeddings for semantic search.\n\nWhen to use this tool:\n- User specifically requests indexing a directory as a knowledge base\n- Adding new documentation, code repositories, or file collections to search\n- Updating index when many files have changed\n\nHow it works:\n- Recursively scans directories for supported file types\n- Extracts text content and splits into chunks\n- Generates vector embeddings for semantic similarity\n- Stores in database for fast retrieval\n\nExamples:\n- Index documentation: \"/home/user/docs/project-wiki\"\n- Index codebase: \"/home/user/projects/api-server\"\n- Index multiple directories: \"/home/user/docs,/home/user/configs\"\n\nIndexing can take several minutes for large directories. Most users will already have directories indexed and can directly use search tool. Use server_info to check current indexing status first.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        directory_path: {\n          type: 'string',\n          description: 'Comma-separated list of absolute directory paths to index. Must be absolute paths since MCP server runs independently. Examples: \"/home/user/projects\" (Unix) or \"C:\\\\Users\\\\user\\\\projects\" (Windows)'\n        }\n      },\n      required: ['directory_path']\n    }\n  },\n  {\n    name: 'search',\n    description: `Search indexed files using natural language queries. Finds files containing content semantically similar to the query.\n\nWhen to use this tool:\n- Find documentation, guides, or explanations about specific topics\n- Locate code files implementing certain functionality or patterns\n- Discover configuration files, scripts, or settings related to a topic\n- Search for files covering specific concepts or technologies\n\nHow it works:\n- Converts query to vector embedding using semantic similarity\n- Searches all indexed file chunks for relevant content\n- Groups results by file and calculates average relevance scores\n- Returns files ranked by relevance score\n\nExamples:\n- \"database configuration and connection pooling setup\" - finds config files, documentation about DB setup\n- \"comprehensive error handling patterns and exception management\" - finds code files with exception handling\n- \"JWT authentication implementation and session management\" - finds auth-related code and docs\n- \"REST API documentation and endpoint specifications\" - finds API guides, endpoint definitions\n- \"Docker deployment scripts and CI/CD pipeline configuration\" - finds deployment automation\n\nReturns files with similarity scores and chunk information. Use get_content to retrieve full file content or get_chunk to retrieve specific chunk content by chunk ID.\n- Groups results by file to avoid duplicates from multiple matching sections\n\nResponse format:\n- Returns lightweight metadata including file paths, relevance scores, and chunk IDs\n- Use 'get_chunk' or 'get_content' tools to fetch actual content from search results\n- Chunks are sorted by relevance score within each file\n- Average similarity score calculated across all matching chunks per file\n\nExample queries:\n- \"error handling patterns and exception management strategies\" (finds try/catch, error classes, logging)\n- \"database migration scripts and schema versioning approaches\" (finds SQL, schema changes, migration files)\n- \"authentication middleware and JWT token validation logic\" (finds auth logic, JWT handling, middleware functions)`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        query: {\n          type: 'string',\n          description: 'Natural language search query describing what you are looking for. Can be concepts, functionality, or specific technical terms.'\n        },\n        limit: {\n          type: 'number',\n          description: 'Maximum number of files to return (default: 10). Each file may contain multiple matching chunks.',\n          default: 10\n        },\n        workspace: {\n          type: 'string',\n          description: 'Optional workspace name to filter search results. Only files within the workspace directories will be searched. IMPORTANT: Use server_info tool first to discover available workspace names - using invalid workspace names will result in empty results.'\n        }\n      },\n      required: ['query']\n    }\n  },\n  {\n    name: 'similar_files',\n    description: `Find files with content similar to a reference file. Uses semantic similarity to find related documents, code files, or any text content.\n\nWhen to use this tool:\n- Find documentation similar to a specific guide or README\n- Locate related code files, configuration files, or scripts\n- Discover alternative implementations or approaches\n- Find files covering similar topics or concepts\n\nHow it works:\n- Analyzes the semantic content of the reference file\n- Compares against all indexed files using vector similarity\n- Returns files ranked by content similarity score\n\nExamples:\n- Given \"deployment-guide.md\" - finds other deployment docs, CI/CD guides, infrastructure setup\n- Given \"troubleshooting.md\" - finds other troubleshooting guides, FAQ files, error documentation\n- Given \"config.yaml\" - finds other configuration files, settings, environment setups\n- Given \"auth.py\" - finds other authentication modules, security code, middleware\n\nReturns file paths with similarity scores. Use get_content to read full files or get_chunk for specific sections.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the reference file. This file must have been previously indexed.'\n        },\n        limit: {\n          type: 'number',\n          description: 'Maximum number of similar files to return (default: 10). Results are sorted by similarity score.',\n          default: 10\n        },\n        workspace: {\n          type: 'string',\n          description: 'Optional workspace name to filter results. Only files within the workspace directories will be considered. IMPORTANT: Use server_info tool first to discover available workspace names - using invalid workspace names will result in empty results.'\n        }\n      },\n      required: ['file_path']\n    }\n  },\n  {\n    name: 'get_content',\n    description: `Retrieve the full content of a file or specific chunks. Reads files directly from the filesystem.\n\nWhen to use this tool:\n- Get complete file content after finding files through search\n- Read documentation, code files, or configuration files for analysis\n- Extract specific sections of large files using chunk ranges\n- Access any text-based file content\n\nHow it works:\n- Reads files directly from filesystem (not from search index)\n- Returns entire file by default\n- Can return specific chunk ranges for indexed files\n- Preserves original formatting and content\n\nExamples:\n- Get full file: file_path=\"/home/user/docs/api.md\"\n- Get specific chunks: file_path=\"/home/user/code/main.py\", chunks=\"2-5\"\n- Get single chunk: file_path=\"/home/user/config.json\", chunks=\"1\"\n\nReturns file content as text. Use this after search or similar_files to read actual content.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the file to retrieve. File must be readable and text-based.'\n        },\n        chunks: {\n          type: 'string',\n          description: 'Optional chunk range specification. Examples: \"3\" (single chunk), \"2-5\" (chunks 2 through 5), \"1-3\" (first three chunks). Only works for indexed files.'\n        }\n      },\n      required: ['file_path']\n    }\n  },\n  {\n    name: 'get_chunk',\n    description: `Retrieve content of a specific chunk from an indexed file. Gets exact text segments identified during search.\n\nWhen to use this tool:\n- Get specific relevant sections after performing a search\n- Access only the most pertinent parts of large files\n- Retrieve content from high-scoring chunks identified in search results\n- Avoid reading entire files when only specific sections are needed\n\nHow it works:\n- Files are split into overlapping text chunks during indexing\n- Each chunk has a sequential ID (\"0\", \"1\", \"2\", etc.)\n- Search results include chunk IDs for relevant sections\n- Returns the exact content that was semantically matched\n\nExamples:\n- After search returns chunk \"3\" from \"api-docs.md\" with high score\n- Get chunk content: file_path=\"/docs/api-docs.md\", chunk_id=\"3\"\n- Returns the specific text segment that matched your query\n\nReturns chunk content as text. Use this with chunk IDs from search results to get precise content sections.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the indexed file containing the desired chunk.'\n        },\n        chunk_id: {\n          type: 'string',\n          description: 'ID of the specific chunk to retrieve. This is typically obtained from search results and is a sequential string like \"0\", \"1\", \"2\", etc.'\n        }\n      },\n      required: ['file_path', 'chunk_id']\n    }\n  },\n  {\n    name: 'server_info',\n    description: `Get information about server status and indexed content. Shows what directories and files are available for search.\n\nWhen to use this tool:\n- REQUIRED: Check available workspace names before using workspace parameter in search or similar_files tools\n- Check what content is already indexed before performing searches\n- Verify system is working properly\n- See indexing statistics and status\n- Understand scope of available searchable content\n\nHow it works:\n- Reports total indexed directories, files, and chunks\n- Shows database size and last indexing time\n- Lists all indexed directories with file counts\n- Lists all configured workspaces with their paths and file counts\n- Reports any errors or issues\n\nExamples:\n- Check workspaces before searching: \"What workspaces are available?\"\n- Check before searching: \"What content is indexed?\"\n- Verify after indexing: \"Did the indexing complete successfully?\"\n- Monitor system: \"How many files are searchable?\"\n\nReturns server version, indexing statistics, directory list, workspace information, and any errors. IMPORTANT: Always use this tool first to discover available workspace names when you need to search within specific workspaces.`,\n    inputSchema: {\n      type: 'object',\n      properties: {},\n      additionalProperties: false\n    }\n  }\n];\n\nexport async function startMcpServer(config: Config): Promise<void> {\n  const server = new Server(\n    {\n      name: 'directory-indexer',\n      version: VERSION\n    },\n    {\n      capabilities: {\n        tools: {}\n      }\n    }\n  );\n\n  server.setRequestHandler(ListToolsRequestSchema, async () => {\n    return {\n      tools: MCP_TOOLS\n    };\n  });\n\n  server.setRequestHandler(CallToolRequestSchema, async (request) => {\n    const { name, arguments: args } = request.params;\n\n    try {\n      switch (name) {\n        case 'index':\n          return await handleIndexTool(args, config);\n        \n        case 'search':\n          return await handleSearchTool(args);\n        \n        case 'similar_files':\n          return await handleSimilarFilesTool(args);\n        \n        case 'get_content':\n          return await handleGetContentTool(args);\n        \n        case 'get_chunk':\n          return await handleGetChunkTool(args);\n        \n        case 'server_info':\n          return await handleServerInfoTool(VERSION);\n        \n        default:\n          throw new Error(`Unknown tool: ${name}`);\n      }\n    } catch (error) {\n      return formatErrorResponse(error);\n    }\n  });\n\n  const transport = new StdioServerTransport();\n  await server.connect(transport);\n  \n  if (config.verbose) {\n    console.error('MCP server started successfully');\n  }\n}","#!/usr/bin/env node\n\nimport { Command } from 'commander';\nimport { fileURLToPath } from 'url';\nimport { readFileSync } from 'fs';\nimport { join, dirname } from 'path';\nimport { indexDirectories } from './indexing.js';\nimport { searchContent, findSimilarFiles, getFileContent } from './search.js';\nimport { loadConfig } from './config.js';\nimport { getIndexStatus } from './storage.js';\nimport { startMcpServer } from './mcp.js';\n\n// Read version from package.json\nconst __dirname = dirname(fileURLToPath(import.meta.url));\nconst packageJsonPath = join(__dirname, '../package.json');\nconst packageJson = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));\nconst VERSION = packageJson.version;\n\nexport async function main() {\n  const program = new Command();\n  \n  program\n    .name('directory-indexer')\n    .description('AI-powered directory indexing with semantic search')\n    .version(VERSION);\n\n  program\n    .command('index')\n    .description('Index directories for semantic search')\n    .argument('<paths...>', 'Directory paths to index')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (paths: string[], options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        console.log(`Indexing ${paths.length} ${paths.length === 1 ? 'directory' : 'directories'}: ${paths.join(', ')}`);\n        const result = await indexDirectories(paths, config);\n        console.log(`Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.failed} failed`);\n        if (result.errors.length > 0) {\n          console.log(`Errors: [`);\n          result.errors.forEach(error => {\n            console.log(`  '${error}'`);\n          });\n          console.log(`]`);\n        }\n      } catch (error) {\n        console.error('Error indexing directories:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('search')\n    .description('Search indexed content semantically')\n    .argument('<query>', 'Search query')\n    .option('-l, --limit <number>', 'Maximum number of results', '10')\n    .option('-c, --show-chunks', 'Show individual chunk scores and IDs')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (query: string, options) => {\n      try {\n        await loadConfig({ verbose: options.verbose });\n        const results = await searchContent(query, { limit: parseInt(options.limit) });\n        \n        if (results.length === 0) {\n          console.log('No results found');\n          return;\n        }\n\n        console.log(`Found ${results.length} results:\\n`);\n        results.forEach((result, index) => {\n          console.log(`${index + 1}. ${result.filePath}`);\n          console.log(`   Score: ${result.score.toFixed(3)} (${result.matchingChunks} chunks)`);\n          \n          if (options.showChunks && result.chunks.length > 0) {\n            console.log(`   Chunks:`);\n            result.chunks.forEach(chunk => {\n              console.log(`     - Chunk ${chunk.chunkId}: ${chunk.score.toFixed(3)}`);\n            });\n          }\n          \n          console.log();\n        });\n      } catch (error) {\n        console.error('Error searching content:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('similar')\n    .description('Find files similar to a given file')\n    .argument('<file>', 'File path to find similar files for')\n    .option('-l, --limit <number>', 'Maximum number of results', '10')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (filePath: string, options) => {\n      try {\n        await loadConfig({ verbose: options.verbose });\n        const results = await findSimilarFiles(filePath, parseInt(options.limit));\n        \n        if (results.length === 0) {\n          console.log('No similar files found');\n          return;\n        }\n\n        console.log(`Found ${results.length} similar files:\\n`);\n        results.forEach((result, index) => {\n          console.log(`${index + 1}. ${result.filePath}`);\n          console.log(`   Similarity: ${result.score.toFixed(3)}`);\n          console.log();\n        });\n      } catch (error) {\n        console.error('Error finding similar files:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('get')\n    .description('Get file content')\n    .argument('<file>', 'File path to retrieve')\n    .option('-c, --chunks <range>', 'Chunk range (e.g., \"2-5\")')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (filePath: string, options) => {\n      try {\n        await loadConfig({ verbose: options.verbose });\n        const content = await getFileContent(filePath, options.chunks);\n        console.log(content);\n      } catch (error) {\n        console.error('Error getting file content:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('serve')\n    .description('Start MCP server')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        await startMcpServer(config);\n      } catch (error) {\n        console.error('Error starting MCP server:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('status')\n    .description('Show indexing status')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (options) => {\n      try {\n        await loadConfig({ verbose: options.verbose });\n        const status = await getIndexStatus();\n        \n        console.log('Directory Indexer Status Report');\n        console.log('=====================================');\n        console.log('');\n        console.log('OVERVIEW:');\n        console.log(`  • ${status.directoriesIndexed} directories have been indexed`);\n        console.log(`  • ${status.filesIndexed} files processed for semantic search`);\n        console.log(`  • ${status.chunksIndexed} text chunks available for AI search`);\n        console.log(`  • Database storage: ${status.databaseSize}`);\n        console.log(`  • Most recent indexing: ${status.lastIndexed || 'No indexing performed yet'}`);\n        \n        if (status.errors.length > 0) {\n          console.log(`  • Processing errors encountered: ${status.errors.length}`);\n          if (options.verbose) {\n            console.log('');\n            console.log('RECENT ERRORS:');\n            status.errors.slice(0, 5).forEach(error => {\n              console.log(`  - ${error}`);\n            });\n          }\n        }\n        \n        console.log('');\n        console.log('INDEXED DIRECTORIES:');\n        if (status.directories.length === 0) {\n          console.log('  No directories have been indexed yet.');\n          console.log('  Run \"directory-indexer index <path>\" to start indexing.');\n        } else {\n          status.directories.forEach(dir => {\n            console.log('');\n            console.log(`  Directory: ${dir.path}`);\n            console.log(`    • Indexing status: ${dir.status}`);\n            console.log(`    • Files processed: ${dir.filesCount}`);\n            console.log(`    • Searchable chunks: ${dir.chunksCount}`);\n            console.log(`    • Last indexed: ${dir.lastIndexed || 'Never completed'}`);\n            if (dir.errors.length > 0) {\n              console.log(`    • Files with errors: ${dir.errors.length}`);\n              if (options.verbose) {\n                console.log('    • Recent errors:');\n                dir.errors.slice(0, 3).forEach(error => {\n                  console.log(`      - ${error}`);\n                });\n              }\n            }\n          });\n        }\n        \n        if (!status.qdrantConsistency.isConsistent) {\n          console.log('');\n          console.log('SYSTEM STATUS:');\n          status.qdrantConsistency.issues.forEach(issue => {\n            console.log(`  • ${issue}`);\n          });\n          console.log('');\n          console.log('ℹ️  Note: Status messages above may be normal during setup or active indexing.');\n        } else {\n          console.log('');\n          console.log('SYSTEM STATUS:');\n          console.log('  • All systems operational - ready for AI-powered search');\n        }\n      } catch (error) {\n        console.error('Error getting status:', error);\n        process.exit(1);\n      }\n    });\n\n  await program.parseAsync();\n}\n\n// Main function is already exported 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Searching all content instead. Available workspaces: ${availableWorkspaces.join(', ')}. Use server_info tool to see workspace details.`\n    : `Note: Workspace '${workspace}' not found and no workspaces are configured. Searching all indexed content.`;\n  \n  return { workspace: undefined, message };\n}\n\nexport async function handleSearchTool(args: unknown): Promise<CallToolResult> {\n  if (!isSearchToolArgs(args)) {\n    throw new Error('query is required');\n  }\n  \n  const { workspace, message } = await validateWorkspace(args.workspace);\n  const results = await searchContent(args.query, { limit: args.limit || 10, workspace });\n  \n  const response = message \n    ? `${message}\\n\\n${JSON.stringify(results, null, 2)}`\n    : JSON.stringify(results, null, 2);\n  \n  return {\n    content: [{ type: 'text', text: response }]\n  };\n}\n\nexport async function handleSimilarFilesTool(args: unknown): Promise<CallToolResult> {\n  if (!isSimilarFilesToolArgs(args)) {\n    throw new Error('file_path is required');\n  }\n  \n  const { workspace, message } = await validateWorkspace(args.workspace);\n  const results = await findSimilarFiles(args.file_path, args.limit || 10, workspace);\n  \n  const response = message \n    ? `${message}\\n\\n${JSON.stringify(results, null, 2)}`\n    : JSON.stringify(results, null, 2);\n  \n  return {\n    content: [{ type: 'text', text: response }]\n  };\n}\n\nexport async function handleGetContentTool(args: unknown): Promise<CallToolResult> {\n  if (!isGetContentToolArgs(args)) {\n    throw new Error('file_path is required');\n  }\n  \n  const content = await getFileContent(args.file_path, args.chunks);\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: content\n      }\n    ]\n  };\n}\n\nexport async function handleGetChunkTool(args: unknown): Promise<CallToolResult> {\n  if (!isGetChunkToolArgs(args)) {\n    throw new Error('file_path and chunk_id are required');\n  }\n  \n  const content = await getChunkContent(args.file_path, args.chunk_id);\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: content\n      }\n    ]\n  };\n}\n\nexport async function handleServerInfoTool(version: string): Promise<CallToolResult> {\n  const status = await getIndexStatus();\n  \n  return {\n    content: [\n      {\n        type: 'text',\n        text: JSON.stringify({\n          name: 'directory-indexer',\n          version: version,\n          status: status\n        }, null, 2)\n      }\n    ]\n  };\n}\n\nexport function formatErrorResponse(error: unknown): CallToolResult {\n  const errorMessage = error instanceof Error ? error.message : 'Unknown error';\n  return {\n    content: [\n      {\n        type: 'text',\n        text: `Error: ${errorMessage}`\n      }\n    ],\n    isError: true\n  };\n}","import { Server } from '@modelcontextprotocol/sdk/server/index.js';\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';\nimport { \n  CallToolRequestSchema, \n  ListToolsRequestSchema,\n  Tool\n} from '@modelcontextprotocol/sdk/types.js';\nimport { readFileSync } from 'fs';\nimport { join, dirname } from 'path';\nimport { fileURLToPath } from 'url';\nimport { Config } from './config.js';\nimport { \n  handleIndexTool, \n  handleSearchTool, \n  handleSimilarFilesTool, \n  handleGetContentTool, \n  handleGetChunkTool, \n  handleServerInfoTool,\n  formatErrorResponse\n} from './mcp-handlers.js';\n\n// Read version from package.json\nconst __dirname = dirname(fileURLToPath(import.meta.url));\nconst packageJsonPath = join(__dirname, '../package.json');\nconst packageJson = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));\nconst VERSION = packageJson.version;\n\nconst MCP_TOOLS: Tool[] = [\n  {\n    name: 'index',\n    description: `Index directories to make their files searchable. Processes files to create vector embeddings for semantic search.\n\nWhen to use this tool:\n- User specifically requests indexing a directory as a knowledge base\n- Adding new documentation, code repositories, or file collections to search\n- Updating index when many files have changed\n\nHow it works:\n- Recursively scans directories for supported file types\n- Extracts text content and splits into chunks\n- Generates vector embeddings for semantic similarity\n- Stores in database for fast retrieval\n\nExamples:\n- Index documentation: \"/home/user/docs/project-wiki\"\n- Index codebase: \"/home/user/projects/api-server\"\n- Index multiple directories: \"/home/user/docs,/home/user/configs\"\n\nIndexing can take several minutes for large directories. Most users will already have directories indexed and can directly use search tool. Use server_info to check current indexing status first.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        directory_path: {\n          type: 'string',\n          description: 'Comma-separated list of absolute directory paths to index. Must be absolute paths since MCP server runs independently. Examples: \"/home/user/projects\" (Unix) or \"C:\\\\Users\\\\user\\\\projects\" (Windows)'\n        }\n      },\n      required: ['directory_path']\n    }\n  },\n  {\n    name: 'search',\n    description: `Search indexed files using natural language queries. Finds files containing content semantically similar to the query.\n\nWhen to use this tool:\n- Find documentation, guides, or explanations about specific topics\n- Locate code files implementing certain functionality or patterns\n- Discover configuration files, scripts, or settings related to a topic\n- Search for files covering specific concepts or technologies\n\nHow it works:\n- Converts query to vector embedding using semantic similarity\n- Searches all indexed file chunks for relevant content\n- Groups results by file and calculates average relevance scores\n- Returns files ranked by relevance score\n\nExamples:\n- \"database configuration and connection pooling setup\" - finds config files, documentation about DB setup\n- \"comprehensive error handling patterns and exception management\" - finds code files with exception handling\n- \"JWT authentication implementation and session management\" - finds auth-related code and docs\n- \"REST API documentation and endpoint specifications\" - finds API guides, endpoint definitions\n- \"Docker deployment scripts and CI/CD pipeline configuration\" - finds deployment automation\n\nReturns files with similarity scores and chunk information. Use get_content to retrieve full file content or get_chunk to retrieve specific chunk content by chunk ID.\n- Groups results by file to avoid duplicates from multiple matching sections\n\nResponse format:\n- Returns lightweight metadata including file paths, relevance scores, and chunk IDs\n- Use 'get_chunk' or 'get_content' tools to fetch actual content from search results\n- Chunks are sorted by relevance score within each file\n- Average similarity score calculated across all matching chunks per file\n\nExample queries:\n- \"error handling patterns and exception management strategies\" (finds try/catch, error classes, logging)\n- \"database migration scripts and schema versioning approaches\" (finds SQL, schema changes, migration files)\n- \"authentication middleware and JWT token validation logic\" (finds auth logic, JWT handling, middleware functions)`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        query: {\n          type: 'string',\n          description: 'Natural language search query describing what you are looking for. Can be concepts, functionality, or specific technical terms.'\n        },\n        limit: {\n          type: 'number',\n          description: 'Maximum number of files to return (default: 10). Each file may contain multiple matching chunks.',\n          default: 10\n        },\n        workspace: {\n          type: 'string',\n          description: 'Optional workspace name to filter search results. Only files within the workspace directories will be searched. IMPORTANT: Use server_info tool first to discover available workspace names - using invalid workspace names will result in empty results.'\n        }\n      },\n      required: ['query']\n    }\n  },\n  {\n    name: 'similar_files',\n    description: `Find files with content similar to a reference file. Uses semantic similarity to find related documents, code files, or any text content.\n\nWhen to use this tool:\n- Find documentation similar to a specific guide or README\n- Locate related code files, configuration files, or scripts\n- Discover alternative implementations or approaches\n- Find files covering similar topics or concepts\n\nHow it works:\n- Analyzes the semantic content of the reference file\n- Compares against all indexed files using vector similarity\n- Returns files ranked by content similarity score\n\nExamples:\n- Given \"deployment-guide.md\" - finds other deployment docs, CI/CD guides, infrastructure setup\n- Given \"troubleshooting.md\" - finds other troubleshooting guides, FAQ files, error documentation\n- Given \"config.yaml\" - finds other configuration files, settings, environment setups\n- Given \"auth.py\" - finds other authentication modules, security code, middleware\n\nReturns file paths with similarity scores. Use get_content to read full files or get_chunk for specific sections.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the reference file. This file must have been previously indexed.'\n        },\n        limit: {\n          type: 'number',\n          description: 'Maximum number of similar files to return (default: 10). Results are sorted by similarity score.',\n          default: 10\n        },\n        workspace: {\n          type: 'string',\n          description: 'Optional workspace name to filter results. Only files within the workspace directories will be considered. IMPORTANT: Use server_info tool first to discover available workspace names - using invalid workspace names will result in empty results.'\n        }\n      },\n      required: ['file_path']\n    }\n  },\n  {\n    name: 'get_content',\n    description: `Retrieve the full content of a file or specific chunks. Reads files directly from the filesystem.\n\nWhen to use this tool:\n- Get complete file content after finding files through search\n- Read documentation, code files, or configuration files for analysis\n- Extract specific sections of large files using chunk ranges\n- Access any text-based file content\n\nHow it works:\n- Reads files directly from filesystem (not from search index)\n- Returns entire file by default\n- Can return specific chunk ranges for indexed files\n- Preserves original formatting and content\n\nExamples:\n- Get full file: file_path=\"/home/user/docs/api.md\"\n- Get specific chunks: file_path=\"/home/user/code/main.py\", chunks=\"2-5\"\n- Get single chunk: file_path=\"/home/user/config.json\", chunks=\"1\"\n\nReturns file content as text. Use this after search or similar_files to read actual content.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the file to retrieve. File must be readable and text-based.'\n        },\n        chunks: {\n          type: 'string',\n          description: 'Optional chunk range specification. Examples: \"3\" (single chunk), \"2-5\" (chunks 2 through 5), \"1-3\" (first three chunks). Only works for indexed files.'\n        }\n      },\n      required: ['file_path']\n    }\n  },\n  {\n    name: 'get_chunk',\n    description: `Retrieve content of a specific chunk from an indexed file. Gets exact text segments identified during search.\n\nWhen to use this tool:\n- Get specific relevant sections after performing a search\n- Access only the most pertinent parts of large files\n- Retrieve content from high-scoring chunks identified in search results\n- Avoid reading entire files when only specific sections are needed\n\nHow it works:\n- Files are split into overlapping text chunks during indexing\n- Each chunk has a sequential ID (\"0\", \"1\", \"2\", etc.)\n- Search results include chunk IDs for relevant sections\n- Returns the exact content that was semantically matched\n\nExamples:\n- After search returns chunk \"3\" from \"api-docs.md\" with high score\n- Get chunk content: file_path=\"/docs/api-docs.md\", chunk_id=\"3\"\n- Returns the specific text segment that matched your query\n\nReturns chunk content as text. Use this with chunk IDs from search results to get precise content sections.`,\n    inputSchema: {\n      type: 'object',\n      properties: {\n        file_path: {\n          type: 'string',\n          description: 'Absolute or relative path to the indexed file containing the desired chunk.'\n        },\n        chunk_id: {\n          type: 'string',\n          description: 'ID of the specific chunk to retrieve. This is typically obtained from search results and is a sequential string like \"0\", \"1\", \"2\", etc.'\n        }\n      },\n      required: ['file_path', 'chunk_id']\n    }\n  },\n  {\n    name: 'server_info',\n    description: `Get information about server status and indexed content. Shows what directories and files are available for search.\n\nWhen to use this tool:\n- REQUIRED: Check available workspace names before using workspace parameter in search or similar_files tools\n- Check what content is already indexed before performing searches\n- Verify system is working properly\n- See indexing statistics and status\n- Understand scope of available searchable content\n\nHow it works:\n- Reports total indexed directories, files, and chunks\n- Shows database size and last indexing time\n- Lists all indexed directories with file counts\n- Lists all configured workspaces with their paths and file counts\n- Reports any errors or issues\n\nExamples:\n- Check workspaces before searching: \"What workspaces are available?\"\n- Check before searching: \"What content is indexed?\"\n- Verify after indexing: \"Did the indexing complete successfully?\"\n- Monitor system: \"How many files are searchable?\"\n\nReturns server version, indexing statistics, directory list, workspace information, and any errors. IMPORTANT: Always use this tool first to discover available workspace names when you need to search within specific workspaces.`,\n    inputSchema: {\n      type: 'object',\n      properties: {},\n      additionalProperties: false\n    }\n  }\n];\n\nexport async function startMcpServer(config: Config): Promise<void> {\n  const server = new Server(\n    {\n      name: 'directory-indexer',\n      version: VERSION\n    },\n    {\n      capabilities: {\n        tools: {}\n      }\n    }\n  );\n\n  server.setRequestHandler(ListToolsRequestSchema, async () => {\n    return {\n      tools: MCP_TOOLS\n    };\n  });\n\n  server.setRequestHandler(CallToolRequestSchema, async (request) => {\n    const { name, arguments: args } = request.params;\n\n    try {\n      switch (name) {\n        case 'index':\n          return await handleIndexTool(args, config);\n        \n        case 'search':\n          return await handleSearchTool(args);\n        \n        case 'similar_files':\n          return await handleSimilarFilesTool(args);\n        \n        case 'get_content':\n          return await handleGetContentTool(args);\n        \n        case 'get_chunk':\n          return await handleGetChunkTool(args);\n        \n        case 'server_info':\n          return await handleServerInfoTool(VERSION);\n        \n        default:\n          throw new Error(`Unknown tool: ${name}`);\n      }\n    } catch (error) {\n      return formatErrorResponse(error);\n    }\n  });\n\n  const transport = new StdioServerTransport();\n  await server.connect(transport);\n  \n  if (config.verbose) {\n    console.error('MCP server started successfully');\n  }\n}","import { Config } from './config.js';\n\nexport class PrerequisiteError extends Error {\n  constructor(message: string, public override cause?: Error) {\n    super(message);\n    this.name = 'PrerequisiteError';\n  }\n}\n\n/**\n * Check if Qdrant is accessible\n */\nexport async function checkQdrant(config: Config): Promise<boolean> {\n  try {\n    const response = await fetch(`${config.storage.qdrantEndpoint}/healthz`);\n    return response.ok;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if Ollama is accessible\n */\nexport async function checkOllama(config: Config): Promise<boolean> {\n  try {\n    const response = await fetch(`${config.embedding.endpoint}/api/tags`);\n    return response.ok;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if Ollama model is available\n */\nexport async function checkOllamaModel(config: Config): Promise<boolean> {\n  try {\n    const response = await fetch(`${config.embedding.endpoint}/api/tags`);\n    if (!response.ok) return false;\n    \n    const data = await response.json();\n    const models = data.models || [];\n    return models.some((model: { name: string }) => model.name.includes(config.embedding.model));\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if OpenAI is accessible\n */\nexport async function checkOpenAI(config: Config): Promise<boolean> {\n  if (!process.env.OPENAI_API_KEY) return false;\n  \n  try {\n    const response = await fetch('https://api.openai.com/v1/embeddings', {\n      method: 'POST',\n      headers: {\n        'Content-Type': 'application/json',\n        'Authorization': `Bearer ${process.env.OPENAI_API_KEY}`\n      },\n      body: JSON.stringify({\n        model: config.embedding.model,\n        input: 'test'\n      })\n    });\n    return response.ok;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Generate error message for failed prerequisites\n */\nfunction createErrorMessage(qdrantOk: boolean, embeddingOk: boolean, provider: string): string {\n  const errors: string[] = [];\n  \n  if (!qdrantOk) {\n    errors.push('Qdrant database is inaccessible');\n  }\n  \n  if (!embeddingOk) {\n    if (provider === 'ollama') {\n      errors.push('Ollama embedding service is inaccessible or model unavailable');\n    } else if (provider === 'openai') {\n      errors.push('OpenAI API is inaccessible or key invalid');\n    }\n  }\n  \n  errors.push('');\n  errors.push('For setup instructions, see: https://github.com/peteretelej/directory-indexer#setup');\n  \n  return errors.join('\\n');\n}\n\n/**\n * Validate all prerequisites for indexing (needs both Qdrant and embedding service)\n */\nexport async function validateIndexPrerequisites(config: Config): Promise<void> {\n  const [qdrantOk, embeddingOk] = await Promise.all([\n    checkQdrant(config),\n    checkEmbeddingService(config)\n  ]);\n  \n  if (!qdrantOk || !embeddingOk) {\n    throw new PrerequisiteError(createErrorMessage(qdrantOk, embeddingOk, config.embedding.provider));\n  }\n}\n\n/**\n * Validate prerequisites for search (needs only Qdrant)\n */\nexport async function validateSearchPrerequisites(config: Config): Promise<void> {\n  const qdrantOk = await checkQdrant(config);\n  \n  if (!qdrantOk) {\n    throw new PrerequisiteError(createErrorMessage(false, true, config.embedding.provider));\n  }\n}\n\n/**\n * Check embedding service based on provider\n */\nasync function checkEmbeddingService(config: Config): Promise<boolean> {\n  switch (config.embedding.provider) {\n    case 'ollama':\n      return (await checkOllama(config)) && (await checkOllamaModel(config));\n    case 'openai':\n      return await checkOpenAI(config);\n    case 'mock':\n      return true;\n    default:\n      return false;\n  }\n}\n\n/**\n * Get status of all services (for status command)\n */\nexport async function getServiceStatus(config: Config): Promise<{\n  qdrant: boolean;\n  embedding: boolean;\n  embeddingProvider: string;\n}> {\n  const [qdrantOk, embeddingOk] = await Promise.all([\n    checkQdrant(config),\n    checkEmbeddingService(config)\n  ]);\n  \n  return {\n    qdrant: qdrantOk,\n    embedding: embeddingOk,\n    embeddingProvider: config.embedding.provider\n  };\n}","#!/usr/bin/env node\n\nimport { Command } from 'commander';\nimport { fileURLToPath } from 'url';\nimport { readFileSync } from 'fs';\nimport { join, dirname } from 'path';\nimport { indexDirectories } from './indexing.js';\nimport { searchContent, findSimilarFiles, getFileContent } from './search.js';\nimport { loadConfig } from './config.js';\nimport { getIndexStatus } from './storage.js';\nimport { startMcpServer } from './mcp.js';\nimport { validateIndexPrerequisites, validateSearchPrerequisites, getServiceStatus } from './prerequisites.js';\n\n// Read version from package.json\nconst __dirname = dirname(fileURLToPath(import.meta.url));\nconst packageJsonPath = join(__dirname, '../package.json');\nconst packageJson = JSON.parse(readFileSync(packageJsonPath, 'utf-8'));\nconst VERSION = packageJson.version;\n\nexport async function main() {\n  const program = new Command();\n  \n  program\n    .name('directory-indexer')\n    .description('AI-powered directory indexing with semantic search')\n    .version(VERSION);\n\n  program\n    .command('index')\n    .description('Index directories for semantic search')\n    .argument('<paths...>', 'Directory paths to index')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (paths: string[], options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        await validateIndexPrerequisites(config);\n        console.log(`Indexing ${paths.length} ${paths.length === 1 ? 'directory' : 'directories'}: ${paths.join(', ')}`);\n        const result = await indexDirectories(paths, config);\n        console.log(`Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.failed} failed`);\n        if (result.errors.length > 0) {\n          console.log(`Errors: [`);\n          result.errors.forEach(error => {\n            console.log(`  '${error}'`);\n          });\n          console.log(`]`);\n        }\n      } catch (error) {\n        console.error('Error indexing directories:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('search')\n    .description('Search indexed content semantically')\n    .argument('<query>', 'Search query')\n    .option('-l, --limit <number>', 'Maximum number of results', '10')\n    .option('-c, --show-chunks', 'Show individual chunk scores and IDs')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (query: string, options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        await validateSearchPrerequisites(config);\n        const results = await searchContent(query, { limit: parseInt(options.limit) });\n        \n        if (results.length === 0) {\n          console.log('No results found');\n          return;\n        }\n\n        console.log(`Found ${results.length} results:\\n`);\n        results.forEach((result, index) => {\n          console.log(`${index + 1}. ${result.filePath}`);\n          console.log(`   Score: ${result.score.toFixed(3)} (${result.matchingChunks} chunks)`);\n          \n          if (options.showChunks && result.chunks.length > 0) {\n            console.log(`   Chunks:`);\n            result.chunks.forEach(chunk => {\n              console.log(`     - Chunk ${chunk.chunkId}: ${chunk.score.toFixed(3)}`);\n            });\n          }\n          \n          console.log();\n        });\n      } catch (error) {\n        console.error('Error searching content:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('similar')\n    .description('Find files similar to a given file')\n    .argument('<file>', 'File path to find similar files for')\n    .option('-l, --limit <number>', 'Maximum number of results', '10')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (filePath: string, options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        await validateSearchPrerequisites(config);\n        const results = await findSimilarFiles(filePath, parseInt(options.limit));\n        \n        if (results.length === 0) {\n          console.log('No similar files found');\n          return;\n        }\n\n        console.log(`Found ${results.length} similar files:\\n`);\n        results.forEach((result, index) => {\n          console.log(`${index + 1}. ${result.filePath}`);\n          console.log(`   Similarity: ${result.score.toFixed(3)}`);\n          console.log();\n        });\n      } catch (error) {\n        console.error('Error finding similar files:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('get')\n    .description('Get file content')\n    .argument('<file>', 'File path to retrieve')\n    .option('-c, --chunks <range>', 'Chunk range (e.g., \"2-5\")')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (filePath: string, options) => {\n      try {\n        await loadConfig({ verbose: options.verbose });\n        const content = await getFileContent(filePath, options.chunks);\n        console.log(content);\n      } catch (error) {\n        console.error('Error getting file content:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('serve')\n    .description('Start MCP server')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        await startMcpServer(config);\n      } catch (error) {\n        console.error('Error starting MCP server:', error);\n        process.exit(1);\n      }\n    });\n\n  program\n    .command('status')\n    .description('Show indexing status')\n    .option('-v, --verbose', 'Enable verbose logging')\n    .action(async (options) => {\n      try {\n        const config = await loadConfig({ verbose: options.verbose });\n        const [status, serviceStatus] = await Promise.all([\n          getIndexStatus(),\n          getServiceStatus(config)\n        ]);\n        \n        console.log('Directory Indexer Status Report');\n        console.log('=====================================');\n        console.log('');\n        console.log('SERVICE STATUS:');\n        console.log(`  • Qdrant database: ${serviceStatus.qdrant ? 'Connected' : 'Disconnected'}`);\n        console.log(`  • Embedding service (${serviceStatus.embeddingProvider}): ${serviceStatus.embedding ? 'Connected' : 'Disconnected'}`);\n        console.log('');\n        console.log('OVERVIEW:');\n        console.log(`  • ${status.directoriesIndexed} directories have been indexed`);\n        console.log(`  • ${status.filesIndexed} files processed for semantic search`);\n        console.log(`  • ${status.chunksIndexed} text chunks available for AI search`);\n        console.log(`  • Database storage: ${status.databaseSize}`);\n        console.log(`  • Most recent indexing: ${status.lastIndexed || 'No indexing performed yet'}`);\n        \n        if (status.errors.length > 0) {\n          console.log(`  • Processing errors encountered: ${status.errors.length}`);\n          if (options.verbose) {\n            console.log('');\n            console.log('RECENT ERRORS:');\n            status.errors.slice(0, 5).forEach(error => {\n              console.log(`  - ${error}`);\n            });\n          }\n        }\n        \n        console.log('');\n        console.log('INDEXED DIRECTORIES:');\n        if (status.directories.length === 0) {\n          console.log('  No directories have been indexed yet.');\n          console.log('  Run \"directory-indexer index <path>\" to start indexing.');\n        } else {\n          status.directories.forEach(dir => {\n            console.log('');\n            console.log(`  Directory: ${dir.path}`);\n            console.log(`    • Indexing status: ${dir.status}`);\n            console.log(`    • Files processed: ${dir.filesCount}`);\n            console.log(`    • Searchable chunks: ${dir.chunksCount}`);\n            console.log(`    • Last indexed: ${dir.lastIndexed || 'Never completed'}`);\n            if (dir.errors.length > 0) {\n              console.log(`    • Files with errors: ${dir.errors.length}`);\n              if (options.verbose) {\n                console.log('    • Recent errors:');\n                dir.errors.slice(0, 3).forEach(error => {\n                  console.log(`      - ${error}`);\n                });\n              }\n            }\n          });\n        }\n        \n        if (!status.qdrantConsistency.isConsistent) {\n          console.log('');\n          console.log('SYSTEM STATUS:');\n          status.qdrantConsistency.issues.forEach(issue => {\n            console.log(`  • ${issue}`);\n          });\n          console.log('');\n          console.log('Note: Status messages above may be normal during setup or active indexing.');\n        } else {\n          console.log('');\n          console.log('SYSTEM STATUS:');\n          console.log('  • All systems operational - ready for AI-powered search');\n        }\n      } catch (error) {\n        console.error('Error getting status:', error);\n        process.exit(1);\n      }\n    });\n\n  await program.parseAsync();\n}\n\n// Main function is already exported 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "directory-indexer",
-  "version": "0.1.3",
+  "version": "0.1.4",
   "description": "AI-powered directory indexing with semantic search for MCP servers",
   "main": "dist/cli.js",
   "bin": {