npm - directory-indexer - Versions diffs - 0.0.12 → 0.0.14 - Mend

directory-indexer 0.0.12 → 0.0.14

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Files changed (12) hide show

package/README.md CHANGED Viewed

@@ -9,6 +9,55 @@
 Self-hosted semantic search for local files. Enable AI assistants to search your documents using vector embeddings and MCP integration.
+## Quick Start
+**Prerequisites:**
+- **[Docker](https://docs.docker.com/get-docker/)** - For running Qdrant and Ollama _(skip if you already have them running natively)_
+- **[Node.js 18+](https://nodejs.org/en/download/)** - Required for running directory-indexer
+_Note: For native Qdrant and Ollama installation without Docker, see [Setup section](#setup)._
+**1. Start Qdrant vector database** _(skip if already running)_
+```bash
+docker run -d --name qdrant -p 127.0.0.1:6333:6333 -v qdrant_storage:/qdrant/storage qdrant/qdrant
+```
+**2. Start Ollama embedding service** _(skip if already running)_
+_Note: Docker Ollama won't use GPU acceleration. For better performance, consider [native installation](#2-embedding-provider)._
+```bash
+docker run -d --name ollama -p 127.0.0.1:11434:11434 -v ollama:/root/.ollama ollama/ollama
+# Pull the embedding model
+docker exec ollama ollama pull nomic-embed-text
+```
+**3. Index your directories**
+```bash
+npx directory-indexer index ~/Documents ~/Projects
+```
+**4. Configure AI assistant** _(Claude Desktop, Cursor, Cline, Roo Code, Zed etc.)_
+Add to your MCP configuration:
+```json
+{
+  "mcpServers": {
+    "directory-indexer": {
+      "command": "npx",
+      "args": ["directory-indexer", "serve"]
+    }
+  }
+}
+```
+Your AI assistant will automatically start the MCP server and can now search your indexed files.
 ## Setup
 Directory Indexer runs locally on your machine or server. It uses an embedding provider (such as Ollama) to create vector embeddings of your files and stores them in a Qdrant vector database for fast semantic search. Both services can run remotely if needed.
@@ -62,7 +111,10 @@ export OPENAI_API_KEY="your-api-key-here"
 Test your setup:
 ```bash
-# Check Qdrant
+# Check Qdrant Health
+curl http://localhost:6333/healthz
+# View collections
 curl http://localhost:6333/collections
 # Check Ollama
@@ -88,24 +140,42 @@ Configure with AI assistants (Claude Desktop, Cline, etc.) using npx:
 }
 ```
-Index your directories and start using with your AI assistant:
+Index your directories:
 ```bash
 # Index your directories first
 npx directory-indexer index /home/user/projects/docs /home/user/work/reports
-# Start MCP server (usually done automatically by your AI assistant)
-npx directory-indexer serve
 ```
+**How it works:**
+1. **MCP server starts automatically** - When your AI assistant connects, it launches the MCP server in the background
+2. **Indexing runs independently** - You can index files before, during, or after MCP setup
+3. **Search immediately available** - Your AI assistant can search files as soon as they're indexed
+**Key point:** You don't need to wait for indexing to complete before using the MCP server. Index files as needed, and your AI assistant will immediately have access to search them.
 ### Using with AI Assistant
 Once configured, your AI assistant can search your indexed documents semantically:
+**Search by concept:**
 - _"Find API authentication examples"_
-- _"Show me incidents similar to this outage report"_
+- _"Show me error handling patterns"_
+- _"Find configuration for Redis"_
+**Find similar content:**
+- _"Show me incidents similar to this outage report"_ _(when you have an incident file open)_
+- _"Find documentation like this API guide"_ _(when viewing an API doc)_
+- _"What files are similar to my deployment script?"_
+**Troubleshoot issues:**
 - _"Find troubleshooting guides on SQL deadlocks"_
-- _"What files contain database configuration?"_
+- _"Show me solutions for timeout errors"_
+- _"Find debugging tips for performance issues"_
 ### Custom Configuration
@@ -133,7 +203,7 @@ For advanced users who prefer command-line usage, see [CLI Documentation](./docs
 ## Configuration
-Environment variables for MCP configuration:
+Environment variables (all optional):
 ```bash
 # Data directory (default: ~/.directory-indexer)
@@ -142,6 +212,10 @@ export DIRECTORY_INDEXER_DATA_DIR="/opt/ai-knowledge-base"
 # Service endpoints (defaults shown)
 export QDRANT_ENDPOINT="http://localhost:6333"
 export OLLAMA_ENDPOINT="http://localhost:11434"
+# Optional API keys
+export OPENAI_API_KEY="your-key-here"
+export QDRANT_API_KEY="your-key-here"
 ```
 For all configuration options, see [Environment Variables](./docs/design.md#environment-variables).
@@ -160,28 +234,6 @@ For all configuration options, see [Environment Variables](./docs/design.md#envi
 - **[Contributing](docs/CONTRIBUTING.md)**: Development setup and guidelines
 - **[Design](docs/design.md)**: Architecture and technical decisions
-## Usage Examples
-Once indexed, try these queries with your AI assistant:
-**Search by concept:**
-- _"Find API authentication examples"_
-- _"Show me error handling patterns"_
-- _"Find configuration for Redis"_
-**Find similar content:**
-- _"Show me incidents similar to this outage report"_ _(when you have an incident file open)_
-- _"Find documentation like this API guide"_ _(when viewing an API doc)_
-- _"What files are similar to my deployment script?"_
-**Troubleshoot issues:**
-- _"Find troubleshooting guides on SQL deadlocks"_
-- _"Show me solutions for timeout errors"_
-- _"Find debugging tips for performance issues"_
 ## License
 MIT

package/bin/directory-indexer.js ADDED Viewed

@@ -0,0 +1,10 @@
+#!/usr/bin/env node
+import('../dist/cli.js').then(({ main }) => {
+  main().catch((error) => {
+    console.error('CLI Error:', error);
+    process.exit(1);
+  });
+}).catch((error) => {
+  console.error('Failed to load CLI:', error);
+  process.exit(1);
+});

package/dist/cli.js CHANGED Viewed

@@ -1,5 +1,8 @@
 #!/usr/bin/env node
 import { Command } from "commander";
+import { fileURLToPath } from "url";
+import { readFileSync } from "fs";
+import { dirname, join } from "path";
 import { indexDirectories } from "./indexing.js";
 import { getFileContent, findSimilarFiles, searchContent } from "./search.js";
 import { loadConfig } from "./config.js";
@@ -7,6 +10,10 @@ import { getIndexStatus } from "./storage.js";
 import { Server } from "@modelcontextprotocol/sdk/server/index.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { ListToolsRequestSchema, CallToolRequestSchema } from "@modelcontextprotocol/sdk/types.js";
+const __dirname$1 = dirname(fileURLToPath(import.meta.url));
+const packageJsonPath$1 = join(__dirname$1, "../package.json");
+const packageJson$1 = JSON.parse(readFileSync(packageJsonPath$1, "utf-8"));
+const VERSION$1 = packageJson$1.version;
 const MCP_TOOLS = [
   {
     name: "index",
@@ -91,7 +98,7 @@ async function startMcpServer(config) {
   const server = new Server(
     {
       name: "directory-indexer",
-      version: "0.0.10"
+      version: VERSION$1
     },
     {
       capabilities: {
@@ -173,7 +180,7 @@ async function startMcpServer(config) {
                 type: "text",
                 text: JSON.stringify({
                   name: "directory-indexer",
-                  version: "0.0.10",
+                  version: VERSION$1,
                   status
                 }, null, 2)
               }
@@ -202,9 +209,13 @@ async function startMcpServer(config) {
     console.error("MCP server started successfully");
   }
 }
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const packageJsonPath = join(__dirname, "../package.json");
+const packageJson = JSON.parse(readFileSync(packageJsonPath, "utf-8"));
+const VERSION = packageJson.version;
 async function main() {
   const program = new Command();
-  program.name("directory-indexer").description("AI-powered directory indexing with semantic search").version("0.0.10");
+  program.name("directory-indexer").description("AI-powered directory indexing with semantic search").version(VERSION);
   program.command("index").description("Index directories for semantic search").argument("<paths...>", "Directory paths to index").option("-v, --verbose", "Enable verbose logging").action(async (paths, options) => {
     try {
       const config = await loadConfig({ verbose: options.verbose });
@@ -285,21 +296,62 @@ async function main() {
     try {
       await loadConfig({ verbose: options.verbose });
       const status = await getIndexStatus();
-      console.log("Indexing Status:");
-      console.log(`  Directories indexed: ${status.directoriesIndexed}`);
-      console.log(`  Files indexed: ${status.filesIndexed}`);
-      console.log(`  Total chunks: ${status.chunksIndexed}`);
-      console.log(`  Database size: ${status.databaseSize}`);
-      console.log(`  Last indexed: ${status.lastIndexed || "Never"}`);
+      console.log("Directory Indexer Status Report");
+      console.log("=====================================");
+      console.log("");
+      console.log("OVERVIEW:");
+      console.log(`  • ${status.directoriesIndexed} directories have been indexed`);
+      console.log(`  • ${status.filesIndexed} files processed for semantic search`);
+      console.log(`  • ${status.chunksIndexed} text chunks available for AI search`);
+      console.log(`  • Database storage: ${status.databaseSize}`);
+      console.log(`  • Most recent indexing: ${status.lastIndexed || "No indexing performed yet"}`);
       if (status.errors.length > 0) {
-        console.log(`  Errors: ${status.errors.length}`);
+        console.log(`  • Processing errors encountered: ${status.errors.length}`);
         if (options.verbose) {
-          console.log("  Recent errors:");
+          console.log("");
+          console.log("RECENT ERRORS:");
           status.errors.slice(0, 5).forEach((error) => {
-            console.log(`    - ${error}`);
+            console.log(`  - ${error}`);
           });
         }
       }
+      console.log("");
+      console.log("INDEXED DIRECTORIES:");
+      if (status.directories.length === 0) {
+        console.log("  No directories have been indexed yet.");
+        console.log('  Run "directory-indexer index <path>" to start indexing.');
+      } else {
+        status.directories.forEach((dir) => {
+          console.log("");
+          console.log(`  Directory: ${dir.path}`);
+          console.log(`    • Indexing status: ${dir.status}`);
+          console.log(`    • Files processed: ${dir.filesCount}`);
+          console.log(`    • Searchable chunks: ${dir.chunksCount}`);
+          console.log(`    • Last indexed: ${dir.lastIndexed || "Never completed"}`);
+          if (dir.errors.length > 0) {
+            console.log(`    • Files with errors: ${dir.errors.length}`);
+            if (options.verbose) {
+              console.log("    • Recent errors:");
+              dir.errors.slice(0, 3).forEach((error) => {
+                console.log(`      - ${error}`);
+              });
+            }
+          }
+        });
+      }
+      if (!status.qdrantConsistency.isConsistent) {
+        console.log("");
+        console.log("SYSTEM STATUS:");
+        status.qdrantConsistency.issues.forEach((issue) => {
+          console.log(`  • ${issue}`);
+        });
+        console.log("");
+        console.log("ℹ️  Note: Status messages above may be normal during setup or active indexing.");
+      } else {
+        console.log("");
+        console.log("SYSTEM STATUS:");
+        console.log("  • All systems operational - ready for AI-powered search");
+      }
     } catch (error) {
       console.error("Error getting status:", error);
       process.exit(1);
@@ -307,9 +359,6 @@ async function main() {
   });
   await program.parseAsync();
 }
-if (import.meta.url === `file://${process.argv[1]}`) {
-  main().catch(console.error);
-}
 export {
   main
 };

package/dist/cli.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"cli.js","sources":["../src/mcp.ts","../src/cli.ts"],"sourcesContent":["import { Server } from '@modelcontextprotocol/sdk/server/index.js';\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';\nimport { \n CallToolRequestSchema, \n ListToolsRequestSchema,\n Tool\n} from '@modelcontextprotocol/sdk/types.js';\nimport { Config } from './config.js';\nimport { indexDirectories } from './indexing.js';\nimport { searchContent, findSimilarFiles, getFileContent } from './search.js';\nimport { getIndexStatus } from './storage.js';\n\nconst MCP_TOOLS: Tool[] = [\n {\n name: 'index',\n description: 'Index directories for semantic search',\n inputSchema: {\n type: 'object',\n properties: {\n directory_path: {\n type: 'string',\n description: 'Comma-separated list of directory paths to index'\n }\n },\n required: ['directory_path']\n }\n },\n {\n name: 'search',\n description: 'Search indexed content semantically',\n inputSchema: {\n type: 'object',\n properties: {\n query: {\n type: 'string',\n description: 'Search query'\n },\n limit: {\n type: 'number',\n description: 'Maximum number of results (default: 10)',\n default: 10\n }\n },\n required: ['query']\n }\n },\n {\n name: 'similar_files',\n description: 'Find files similar to a given file',\n inputSchema: {\n type: 'object',\n properties: {\n file_path: {\n type: 'string',\n description: 'Path to the file to find similar files for'\n },\n limit: {\n type: 'number',\n description: 'Maximum number of results (default: 10)',\n default: 10\n }\n },\n required: ['file_path']\n }\n },\n {\n name: 'get_content',\n description: 'Get file content',\n inputSchema: {\n type: 'object',\n properties: {\n file_path: {\n type: 'string',\n description: 'Path to the file to retrieve'\n },\n chunks: {\n type: 'string',\n description: 'Optional chunk range (e.g., \"2-5\")'\n }\n },\n required: ['file_path']\n }\n },\n {\n name: 'server_info',\n description: 'Get server information and status',\n inputSchema: {\n type: 'object',\n properties: {}\n }\n }\n];\n\nexport async function startMcpServer(config: Config): Promise<void> {\n const server = new Server(\n {\n name: 'directory-indexer',\n version: '0.0.10'\n },\n {\n capabilities: {\n tools: {}\n }\n }\n );\n\n server.setRequestHandler(ListToolsRequestSchema, async () => {\n return {\n tools: MCP_TOOLS\n };\n });\n\n server.setRequestHandler(CallToolRequestSchema, async (request) => {\n const { name, arguments: args } = request.params;\n\n try {\n switch (name) {\n case 'index': {\n if (!args \|\| typeof args.directory_path !== 'string') {\n throw new Error('directory_path is required');\n }\n const paths = args.directory_path.split(',').map((p: string) => p.trim());\n const result = await indexDirectories(paths, config);\n return {\n content: [\n {\n type: 'text',\n text: `Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.errors.length} errors`\n }\n ]\n };\n }\n\n case 'search': {\n if (!args \|\| typeof args.query !== 'string') {\n throw new Error('query is required');\n }\n const results = await searchContent(args.query, { limit: (args.limit as number) \|\| 10 });\n return {\n content: [\n {\n type: 'text',\n text: JSON.stringify(results, null, 2)\n }\n ]\n };\n }\n\n case 'similar_files': {\n if (!args \|\| typeof args.file_path !== 'string') {\n throw new Error('file_path is required');\n }\n const results = await findSimilarFiles(args.file_path, (args.limit as number) \|\| 10);\n return {\n content: [\n {\n type: 'text',\n text: JSON.stringify(results, null, 2)\n }\n ]\n };\n }\n\n case 'get_content': {\n if (!args \|\| typeof args.file_path !== 'string') {\n throw new Error('file_path is required');\n }\n const content = await getFileContent(args.file_path, args.chunks as string);\n return {\n content: [\n {\n type: 'text',\n text: content\n }\n ]\n };\n }\n\n case 'server_info': {\n const status = await getIndexStatus();\n return {\n content: [\n {\n type: 'text',\n text: JSON.stringify({\n name: 'directory-indexer',\n version: '0.0.10',\n status: status\n }, null, 2)\n }\n ]\n };\n }\n\n default:\n throw new Error(`Unknown tool: ${name}`);\n }\n } catch (error) {\n const errorMessage = error instanceof Error ? error.message : 'Unknown error';\n return {\n content: [\n {\n type: 'text',\n text: `Error: ${errorMessage}`\n }\n ],\n isError: true\n };\n }\n });\n\n const transport = new StdioServerTransport();\n await server.connect(transport);\n \n if (config.verbose) {\n console.error('MCP server started successfully');\n }\n}","#!/usr/bin/env node\n\nimport { Command } from 'commander';\nimport { indexDirectories } from './indexing.js';\nimport { searchContent, findSimilarFiles, getFileContent } from './search.js';\nimport { loadConfig } from './config.js';\nimport { getIndexStatus } from './storage.js';\nimport { startMcpServer } from './mcp.js';\n\nexport async function main() {\n const program = new Command();\n \n program\n .name('directory-indexer')\n .description('AI-powered directory indexing with semantic search')\n .version('0.0.10');\n\n program\n .command('index')\n .description('Index directories for semantic search')\n .argument('<paths...>', 'Directory paths to index')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (paths: string[], options) => {\n try {\n const config = await loadConfig({ verbose: options.verbose });\n console.log(`Indexing ${paths.length} directories...`);\n const result = await indexDirectories(paths, config);\n console.log(`Indexed ${result.indexed} files, skipped ${result.skipped} files, ${result.errors.length} errors`);\n if (result.errors.length > 0 && config.verbose) {\n console.log('Errors:', result.errors);\n }\n } catch (error) {\n console.error('Error indexing directories:', error);\n process.exit(1);\n }\n });\n\n program\n .command('search')\n .description('Search indexed content semantically')\n .argument('<query>', 'Search query')\n .option('-l, --limit <number>', 'Maximum number of results', '10')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (query: string, options) => {\n try {\n await loadConfig({ verbose: options.verbose });\n const results = await searchContent(query, { limit: parseInt(options.limit) });\n \n if (results.length === 0) {\n console.log('No results found');\n return;\n }\n\n console.log(`Found ${results.length} results:\\n`);\n results.forEach((result, index) => {\n console.log(`${index + 1}. ${result.filePath}`);\n console.log(` Score: ${result.score.toFixed(3)}`);\n if (result.content) {\n console.log(` Content: ${result.content.substring(0, 150)}...`);\n }\n console.log();\n });\n } catch (error) {\n console.error('Error searching content:', error);\n process.exit(1);\n }\n });\n\n program\n .command('similar')\n .description('Find files similar to a given file')\n .argument('<file>', 'File path to find similar files for')\n .option('-l, --limit <number>', 'Maximum number of results', '10')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (filePath: string, options) => {\n try {\n await loadConfig({ verbose: options.verbose });\n const results = await findSimilarFiles(filePath, parseInt(options.limit));\n \n if (results.length === 0) {\n console.log('No similar files found');\n return;\n }\n\n console.log(`Found ${results.length} similar files:\\n`);\n results.forEach((result, index) => {\n console.log(`${index + 1}. ${result.filePath}`);\n console.log(` Similarity: ${result.score.toFixed(3)}`);\n console.log();\n });\n } catch (error) {\n console.error('Error finding similar files:', error);\n process.exit(1);\n }\n });\n\n program\n .command('get')\n .description('Get file content')\n .argument('<file>', 'File path to retrieve')\n .option('-c, --chunks <range>', 'Chunk range (e.g., \"2-5\")')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (filePath: string, options) => {\n try {\n await loadConfig({ verbose: options.verbose });\n const content = await getFileContent(filePath, options.chunks);\n console.log(content);\n } catch (error) {\n console.error('Error getting file content:', error);\n process.exit(1);\n }\n });\n\n program\n .command('serve')\n .description('Start MCP server')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (options) => {\n try {\n const config = await loadConfig({ verbose: options.verbose });\n await startMcpServer(config);\n } catch (error) {\n console.error('Error starting MCP server:', error);\n process.exit(1);\n }\n });\n\n program\n .command('status')\n .description('Show indexing status')\n .option('-v, --verbose', 'Enable verbose logging')\n .action(async (options) => {\n try {\n await loadConfig({ verbose: options.verbose });\n const status = await getIndexStatus();\n \n console.log('Indexing Status:');\n console.log(` Directories indexed: ${status.directoriesIndexed}`);\n console.log(` Files indexed: ${status.filesIndexed}`);\n console.log(` Total chunks: ${status.chunksIndexed}`);\n console.log(` Database size: ${status.databaseSize}`);\n console.log(` Last indexed: ${status.lastIndexed \|\| 'Never'}`);\n \n if (status.errors.length > 0) {\n console.log(` Errors: ${status.errors.length}`);\n if (options.verbose) {\n console.log(' Recent errors:');\n status.errors.slice(0, 5).forEach(error => {\n console.log(` - ${error}`);\n });\n }\n }\n } catch (error) {\n console.error('Error getting status:', error);\n process.exit(1);\n }\n });\n\n await program.parseAsync();\n}\n\nif (import.meta.url === `file://${process.argv[1]}`) {\n 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package/dist/config.js CHANGED Viewed

@@ -30,11 +30,14 @@ class ConfigError extends Error {
 }
 function loadConfig(options = {}) {
   const dataDir = process.env.DIRECTORY_INDEXER_DATA_DIR || join(homedir(), ".directory-indexer");
+  const isTest = process.env.NODE_ENV === "test" || process.env.VITEST === "true";
+  const dbFileName = isTest ? "test-data.db" : "data.db";
+  const defaultCollection = isTest ? "directory-indexer-test" : "directory-indexer";
   const config = {
     storage: {
-      sqlitePath: join(dataDir, "data.db"),
+      sqlitePath: join(dataDir, dbFileName),
       qdrantEndpoint: process.env.QDRANT_ENDPOINT || "http://localhost:6333",
-      qdrantCollection: process.env.DIRECTORY_INDEXER_QDRANT_COLLECTION || "directory-indexer"
+      qdrantCollection: process.env.DIRECTORY_INDEXER_QDRANT_COLLECTION || defaultCollection
     },
     embedding: {
       provider: process.env.EMBEDDING_PROVIDER || "ollama",

package/dist/config.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"config.js","sources":["../src/config.ts"],"sourcesContent":["import { homedir } from 'os';\nimport { join } from 'path';\nimport { z } from 'zod';\n\nconst ConfigSchema = z.object({\n storage: z.object({\n sqlitePath: z.string(),\n qdrantEndpoint: z.string().url(),\n qdrantCollection: z.string(),\n }),\n embedding: z.object({\n provider: z.enum(['ollama', 'openai', 'mock']),\n model: z.string(),\n endpoint: z.string().url(),\n }),\n indexing: z.object({\n chunkSize: z.number().positive(),\n chunkOverlap: z.number().nonnegative(),\n maxFileSize: z.number().positive(),\n ignorePatterns: z.array(z.string()),\n }),\n dataDir: z.string(),\n verbose: z.boolean(),\n});\n\nexport type Config = z.infer<typeof ConfigSchema>;\n\nexport class ConfigError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'ConfigError';\n }\n}\n\nexport function loadConfig(options: { verbose?: boolean } = {}): Config {\n const dataDir = process.env.DIRECTORY_INDEXER_DATA_DIR \|\| join(homedir(), '.directory-indexer');\n \n const config = {\n storage: {\n sqlitePath: join(dataDir, ~~'data.db'~~),\n qdrantEndpoint: process.env.QDRANT_ENDPOINT \|\| 'http://localhost:6333',\n qdrantCollection: process.env.DIRECTORY_INDEXER_QDRANT_COLLECTION \|\| ~~'directory-indexer'~~,\n },\n embedding: {\n provider: (process.env.EMBEDDING_PROVIDER as Config['embedding']['provider']) \|\| 'ollama',\n model: process.env.EMBEDDING_MODEL \|\| 'nomic-embed-text',\n endpoint: process.env.OLLAMA_ENDPOINT \|\| 'http://localhost:11434',\n },\n indexing: {\n chunkSize: parseInt(process.env.CHUNK_SIZE \|\| '512'),\n chunkOverlap: parseInt(process.env.CHUNK_OVERLAP \|\| '50'),\n maxFileSize: parseInt(process.env.MAX_FILE_SIZE \|\| '10485760'),\n ignorePatterns: ['.git', 'node_modules', 'target', '.DS_Store'],\n },\n dataDir,\n verbose: options.verbose ?? (process.env.VERBOSE === 'true'),\n };\n\n try {\n return ConfigSchema.parse(config);\n } catch (error) {\n if (error instanceof z.ZodError) {\n const messages = error.errors.map(e => `${e.path.join('.')}: ${e.message}`);\n throw new ConfigError(`Configuration validation failed: ${messages.join(', ')}`, error);\n }\n throw new ConfigError('Failed to load configuration', error as Error);\n }\n}"],"names":[],"mappings":";;;AAIA,MAAM,eAAe,EAAE,OAAO;AAAA,EAC5B,SAAS,EAAE,OAAO;AAAA,IAChB,YAAY,EAAE,OAAA;AAAA,IACd,gBAAgB,EAAE,OAAA,EAAS,IAAA;AAAA,IAC3B,kBAAkB,EAAE,OAAA;AAAA,EAAO,CAC5B;AAAA,EACD,WAAW,EAAE,OAAO;AAAA,IAClB,UAAU,EAAE,KAAK,CAAC,UAAU,UAAU,MAAM,CAAC;AAAA,IAC7C,OAAO,EAAE,OAAA;AAAA,IACT,UAAU,EAAE,OAAA,EAAS,IAAA;AAAA,EAAI,CAC1B;AAAA,EACD,UAAU,EAAE,OAAO;AAAA,IACjB,WAAW,EAAE,OAAA,EAAS,SAAA;AAAA,IACtB,cAAc,EAAE,OAAA,EAAS,YAAA;AAAA,IACzB,aAAa,EAAE,OAAA,EAAS,SAAA;AAAA,IACxB,gBAAgB,EAAE,MAAM,EAAE,QAAQ;AAAA,EAAA,CACnC;AAAA,EACD,SAAS,EAAE,OAAA;AAAA,EACX,SAAS,EAAE,QAAA;AACb,CAAC;AAIM,MAAM,oBAAoB,MAAM;AAAA,EACrC,YAAY,SAAiC,OAAe;AAC1D,UAAM,OAAO;AAD8B,SAAA,QAAA;AAE3C,SAAK,OAAO;AAAA,EACd;AACF;AAEO,SAAS,WAAW,UAAiC,IAAY;AACtE,QAAM,UAAU,QAAQ,IAAI,8BAA8B,KAAK,QAAA,GAAW,oBAAoB;~~AAE9F~~,QAAM,SAAS;AAAA,IACb,SAAS;AAAA,MACP,YAAY,KAAK,SAAS,~~SAAS~~;AAAA,~~MACnC~~,gBAAgB,QAAQ,IAAI,mBAAmB;AAAA,MAC/C,kBAAkB,QAAQ,IAAI,uCAAuC;AAAA,IAAA;AAAA,IAEvE,WAAW;AAAA,MACT,UAAW,QAAQ,IAAI,sBAA0D;AAAA,MACjF,OAAO,QAAQ,IAAI,mBAAmB;AAAA,MACtC,UAAU,QAAQ,IAAI,mBAAmB;AAAA,IAAA;AAAA,IAE3C,UAAU;AAAA,MACR,WAAW,SAAS,QAAQ,IAAI,cAAc,KAAK;AAAA,MACnD,cAAc,SAAS,QAAQ,IAAI,iBAAiB,IAAI;AAAA,MACxD,aAAa,SAAS,QAAQ,IAAI,iBAAiB,UAAU;AAAA,MAC7D,gBAAgB,CAAC,QAAQ,gBAAgB,UAAU,WAAW;AAAA,IAAA;AAAA,IAEhE;AAAA,IACA,SAAS,QAAQ,WAAY,QAAQ,IAAI,YAAY;AAAA,EAAA;AAGvD,MAAI;AACF,WAAO,aAAa,MAAM,MAAM;AAAA,EAClC,SAAS,OAAO;AACd,QAAI,iBAAiB,EAAE,UAAU;AAC/B,YAAM,WAAW,MAAM,OAAO,IAAI,OAAK,GAAG,EAAE,KAAK,KAAK,GAAG,CAAC,KAAK,EAAE,OAAO,EAAE;AAC1E,YAAM,IAAI,YAAY,oCAAoC,SAAS,KAAK,IAAI,CAAC,IAAI,KAAK;AAAA,IACxF;AACA,UAAM,IAAI,YAAY,gCAAgC,KAAc;AAAA,EACtE;AACF;"}
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package/dist/embedding.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"embedding.js","sources":["../src/embedding.ts"],"sourcesContent":["import { Config } from './config.js';\n\nexport interface EmbeddingProvider {\n name: string;\n dimensions: number;\n generateEmbedding(text: string): Promise<number[]>;\n generateEmbeddings(texts: string[]): Promise<number[][]>;\n}\n\nexport interface EmbeddingConfig {\n model: string;\n endpoint: string;\n dimensions: number;\n}\n\nexport class EmbeddingError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'EmbeddingError';\n }\n}\n\nclass MockEmbeddingProvider implements EmbeddingProvider {\n name = 'mock';\n \n constructor(private config: EmbeddingConfig) {}\n \n get dimensions(): number {\n return this.config.dimensions;\n }\n \n async generateEmbedding(text: string): Promise<number[]> {\n const hash = this.hashString(text);\n return Array.from({ length: this.dimensions }, (_, i) => \n Math.sin(hash + i) * 0.1\n );\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n return Promise.all(texts.map(text => this.generateEmbedding(text)));\n }\n \n private hashString(str: string): number {\n let hash = 0;\n for (let i = 0; i < str.length; i++) {\n const char = str.charCodeAt(i);\n hash = ((hash << 5) - hash) + char;\n hash = hash & hash;\n }\n return Math.abs(hash);\n }\n}\n\nclass OllamaEmbeddingProvider implements EmbeddingProvider {\n name = 'ollama';\n dimensions = 768;\n \n constructor(private config: EmbeddingConfig) {}\n \n async generateEmbedding(text: string): Promise<number[]> {\n try {\n const response = await fetch(`${this.config.endpoint}/api/embeddings`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n model: this.config.model,\n prompt: text\n })\n });\n \n if (!response.ok) {\n throw new Error(`Ollama API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.embedding;\n } catch (error) {\n throw new EmbeddingError(`Failed to generate Ollama embedding`, error as Error);\n }\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n return Promise.all(texts.map(text => this.generateEmbedding(text)));\n }\n}\n\nclass OpenAIEmbeddingProvider implements EmbeddingProvider {\n name = 'openai';\n dimensions = 1536;\n \n constructor(private config: EmbeddingConfig) {}\n \n async generateEmbedding(text: string): Promise<number[]> {\n try {\n const response = await fetch('https://api.openai.com/v1/embeddings', {\n method: 'POST',\n headers: {\n 'Content-Type': 'application/json',\n 'Authorization': `Bearer ${process.env.OPENAI_API_KEY}`\n },\n body: JSON.stringify({\n model: this.config.model,\n input: text\n })\n });\n \n if (!response.ok) {\n throw new Error(`OpenAI API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.data[0].embedding;\n } catch (error) {\n throw new EmbeddingError(`Failed to generate OpenAI embedding`, error as Error);\n }\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n try {\n const response = await fetch('https://api.openai.com/v1/embeddings', {\n method: 'POST',\n headers: {\n 'Content-Type': 'application/json',\n 'Authorization': `Bearer ${process.env.OPENAI_API_KEY}`\n },\n body: JSON.stringify({\n model: this.config.model,\n input: texts\n })\n });\n \n if (!response.ok) {\n throw new Error(`OpenAI API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.data.map((item: ~~any~~) => item.embedding);\n } catch (error) {\n throw new EmbeddingError(`Failed to generate OpenAI embeddings`, error as Error);\n }\n }\n}\n\nexport function createEmbeddingProvider(provider: string, config: EmbeddingConfig): EmbeddingProvider {\n switch (provider) {\n case 'mock':\n return new MockEmbeddingProvider(config);\n case 'ollama':\n return new OllamaEmbeddingProvider(config);\n case 'openai':\n return new OpenAIEmbeddingProvider(config);\n default:\n throw new EmbeddingError(`Unknown embedding provider: ${provider}`);\n }\n}\n\nexport async function generateEmbedding(text: string, config: Config): Promise<number[]> {\n const provider = createEmbeddingProvider(config.embedding.provider, {\n model: config.embedding.model,\n endpoint: config.embedding.endpoint,\n dimensions: config.embedding.provider === 'mock' ? 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1	+ {"version":3,"file":"embedding.js","sources":["../src/embedding.ts"],"sourcesContent":["import { Config } from './config.js';\n\nexport interface EmbeddingProvider {\n name: string;\n dimensions: number;\n generateEmbedding(text: string): Promise<number[]>;\n generateEmbeddings(texts: string[]): Promise<number[][]>;\n}\n\nexport interface EmbeddingConfig {\n model: string;\n endpoint: string;\n dimensions: number;\n}\n\nexport class EmbeddingError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'EmbeddingError';\n }\n}\n\nclass MockEmbeddingProvider implements EmbeddingProvider {\n name = 'mock';\n \n constructor(private config: EmbeddingConfig) {}\n \n get dimensions(): number {\n return this.config.dimensions;\n }\n \n async generateEmbedding(text: string): Promise<number[]> {\n const hash = this.hashString(text);\n return Array.from({ length: this.dimensions }, (_, i) => \n Math.sin(hash + i) * 0.1\n );\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n return Promise.all(texts.map(text => this.generateEmbedding(text)));\n }\n \n private hashString(str: string): number {\n let hash = 0;\n for (let i = 0; i < str.length; i++) {\n const char = str.charCodeAt(i);\n hash = ((hash << 5) - hash) + char;\n hash = hash & hash;\n }\n return Math.abs(hash);\n }\n}\n\nclass OllamaEmbeddingProvider implements EmbeddingProvider {\n name = 'ollama';\n dimensions = 768;\n \n constructor(private config: EmbeddingConfig) {}\n \n async generateEmbedding(text: string): Promise<number[]> {\n try {\n const response = await fetch(`${this.config.endpoint}/api/embeddings`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n model: this.config.model,\n prompt: text\n })\n });\n \n if (!response.ok) {\n throw new Error(`Ollama API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.embedding;\n } catch (error) {\n throw new EmbeddingError(`Failed to generate Ollama embedding`, error as Error);\n }\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n return Promise.all(texts.map(text => this.generateEmbedding(text)));\n }\n}\n\nclass OpenAIEmbeddingProvider implements EmbeddingProvider {\n name = 'openai';\n dimensions = 1536;\n \n constructor(private config: EmbeddingConfig) {}\n \n async generateEmbedding(text: string): Promise<number[]> {\n try {\n const response = await fetch('https://api.openai.com/v1/embeddings', {\n method: 'POST',\n headers: {\n 'Content-Type': 'application/json',\n 'Authorization': `Bearer ${process.env.OPENAI_API_KEY}`\n },\n body: JSON.stringify({\n model: this.config.model,\n input: text\n })\n });\n \n if (!response.ok) {\n throw new Error(`OpenAI API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.data[0].embedding;\n } catch (error) {\n throw new EmbeddingError(`Failed to generate OpenAI embedding`, error as Error);\n }\n }\n \n async generateEmbeddings(texts: string[]): Promise<number[][]> {\n try {\n const response = await fetch('https://api.openai.com/v1/embeddings', {\n method: 'POST',\n headers: {\n 'Content-Type': 'application/json',\n 'Authorization': `Bearer ${process.env.OPENAI_API_KEY}`\n },\n body: JSON.stringify({\n model: this.config.model,\n input: texts\n })\n });\n \n if (!response.ok) {\n throw new Error(`OpenAI API error: ${response.statusText}`);\n }\n \n const data = await response.json();\n return data.data.map((item: { embedding: number[] }) => item.embedding);\n } catch (error) {\n throw new EmbeddingError(`Failed to generate OpenAI embeddings`, error as Error);\n }\n }\n}\n\nexport function createEmbeddingProvider(provider: string, config: EmbeddingConfig): EmbeddingProvider {\n switch (provider) {\n case 'mock':\n return new MockEmbeddingProvider(config);\n case 'ollama':\n return new OllamaEmbeddingProvider(config);\n case 'openai':\n return new OpenAIEmbeddingProvider(config);\n default:\n throw new EmbeddingError(`Unknown embedding provider: ${provider}`);\n }\n}\n\nexport async function generateEmbedding(text: string, config: Config): Promise<number[]> {\n const provider = createEmbeddingProvider(config.embedding.provider, {\n model: config.embedding.model,\n endpoint: config.embedding.endpoint,\n dimensions: config.embedding.provider === 'mock' ? 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package/dist/indexing.js CHANGED Viewed

@@ -1,6 +1,6 @@
 import { promises } from "fs";
 import { join } from "path";
-import { normalizePath, shouldIgnoreFile, isDirectory, isFile, isSupportedFileType, getFileInfo } from "./utils.js";
+import { getFileInfo, normalizePath, shouldIgnoreFile, isDirectory, isFile, isSupportedFileType } from "./utils.js";
 import { generateEmbedding } from "./embedding.js";
 import { initializeStorage } from "./storage.js";
 class IndexingError extends Error {
@@ -86,6 +86,31 @@ async function getFileMetadata(filePath) {
     throw new IndexingError(`Failed to get file metadata`, error);
   }
 }
+async function shouldReprocessFile(filePath, existingRecord, config) {
+  try {
+    const fs2 = await import("fs/promises");
+    const currentStats = await fs2.stat(filePath);
+    const existingModTime = new Date(existingRecord.modifiedTime);
+    if (currentStats.mtime <= existingModTime) {
+      return false;
+    }
+    const currentFileInfo = await getFileInfo(filePath);
+    return currentFileInfo.hash !== existingRecord.hash;
+  } catch (modtimeError) {
+    if (config.verbose) {
+      console.log(`Warning: Could not check modification time for ${filePath}:`, modtimeError);
+    }
+    try {
+      const currentFileInfo = await getFileInfo(filePath);
+      return currentFileInfo.hash !== existingRecord.hash;
+    } catch (hashError) {
+      if (config.verbose) {
+        console.log(`Warning: Could not compute hash for ${filePath}:`, hashError);
+      }
+      return true;
+    }
+  }
+}
 async function indexDirectories(paths, config) {
   let indexed = 0;
   let skipped = 0;
@@ -97,9 +122,19 @@ async function indexDirectories(paths, config) {
   const { sqlite, qdrant } = await initializeStorage(config);
   for (const path of paths) {
     try {
+      await sqlite.upsertDirectory(path, "indexing");
       const files = await scanDirectory(path, scanOptions);
       for (const file of files) {
         try {
+          const existingFile = await sqlite.getFile(file.path);
+          if (existingFile) {
+            const needsReprocessing = await shouldReprocessFile(file.path, existingFile, config);
+            if (!needsReprocessing) {
+              skipped++;
+              continue;
+            }
+            await qdrant.deletePointsByFileHash(existingFile.hash);
+          }
           const content = await promises.readFile(file.path, "utf-8");
           const chunks = chunkText(content, config.indexing.chunkSize, config.indexing.chunkOverlap);
           await sqlite.upsertFile(file, chunks);
@@ -123,13 +158,16 @@ async function indexDirectories(paths, config) {
           }
           indexed++;
         } catch (error) {
-          skipped++;
           const errorMessage = error instanceof Error ? error.message : String(error);
           const causeMessage = error instanceof Error && error.cause ? `: ${error.cause.message}` : "";
           errors.push(`Failed to process ${file.path}: ${errorMessage}${causeMessage}`);
         }
       }
+      const directoryErrors = errors.filter((err) => err.includes(path));
+      const directoryStatus = directoryErrors.length > 0 ? "failed" : "completed";
+      await sqlite.upsertDirectory(path, directoryStatus);
     } catch (error) {
+      await sqlite.upsertDirectory(path, "failed");
       errors.push(`Failed to scan directory ${path}: ${error.message}`);
     }
   }

package/dist/indexing.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"indexing.js","sources":["../src/indexing.ts"],"sourcesContent":["import { promises as fs } from 'fs';\nimport { join } from 'path';\nimport { Config } from './config.js';\nimport { \n FileInfo, \n ChunkInfo, \n normalizePath, \n getFileInfo, \n shouldIgnoreFile, \n isSupportedFileType,\n isDirectory,\n isFile\n} from './utils.js';\nimport { generateEmbedding } from './embedding.js';\nimport { initializeStorage } from './storage.js';\n\nexport interface ScanOptions {\n ignorePatterns: string[];\n maxFileSize: number;\n}\n\nexport interface IndexResult {\n indexed: number;\n skipped: number;\n errors: string[];\n}\n\nexport class IndexingError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'IndexingError';\n }\n}\n\nexport function chunkText(content: string, chunkSize: number, overlap: number): ChunkInfo[] {\n if (content.length <= chunkSize) {\n return [{\n id: '0',\n content,\n startIndex: 0,\n endIndex: content.length\n }];\n }\n \n const chunks: ChunkInfo[] = [];\n let startIndex = 0;\n let chunkId = 0;\n \n while (startIndex < content.length) {\n const endIndex = Math.min(startIndex + chunkSize, content.length);\n const chunkContent = content.slice(startIndex, endIndex);\n \n chunks.push({\n id: chunkId.toString(),\n content: chunkContent,\n startIndex,\n endIndex\n });\n \n chunkId++;\n const nextStart = endIndex - overlap;\n \n if (nextStart <= startIndex) {\n startIndex = startIndex + Math.max(1, chunkSize - overlap);\n } else {\n startIndex = nextStart;\n }\n \n if (startIndex >= content.length) break;\n }\n \n return chunks;\n}\n\nexport async function scanDirectory(dirPath: string, options: ScanOptions): Promise<FileInfo[]> {\n const files: FileInfo[] = [];\n const visited = new Set<string>();\n \n async function walkDirectory(currentPath: string): Promise<void> {\n const normalizedPath = normalizePath(currentPath);\n \n if (visited.has(normalizedPath)) {\n return;\n }\n visited.add(normalizedPath);\n \n try {\n if (shouldIgnoreFile(normalizedPath, options.ignorePatterns)) {\n return;\n }\n \n if (await isDirectory(normalizedPath)) {\n const entries = await fs.readdir(normalizedPath);\n \n for (const entry of entries) {\n const fullPath = join(normalizedPath, entry);\n await walkDirectory(fullPath);\n }\n } else if (await isFile(normalizedPath)) {\n if (!isSupportedFileType(normalizedPath)) {\n return;\n }\n \n const stats = await fs.stat(normalizedPath);\n if (stats.size > options.maxFileSize) {\n return;\n }\n \n const fileInfo = await getFileInfo(normalizedPath);\n files.push(fileInfo);\n }\n } catch (error) {\n throw new IndexingError(`Failed to scan directory: ${normalizedPath}`, error as Error);\n }\n }\n \n await walkDirectory(dirPath);\n return files;\n}\n\nexport async function getFileMetadata(filePath: string): Promise<FileInfo> {\n try {\n return await getFileInfo(filePath);\n } catch (error) {\n throw new IndexingError(`Failed to get file metadata`, error as Error);\n }\n}\n\nexport async function indexDirectories(paths: string[], config: Config): Promise<IndexResult> {\n let indexed = 0;\n let skipped = 0;\n const errors: string[] = [];\n \n const scanOptions: ScanOptions = {\n ignorePatterns: config.indexing.ignorePatterns,\n maxFileSize: config.indexing.maxFileSize\n };\n \n // Initialize storage\n const { sqlite, qdrant } = await initializeStorage(config);\n \n for (const path of paths) {\n try {\n const files = await scanDirectory(path, scanOptions);\n \n for (const file of files) {\n try {\n const content = await fs.readFile(file.path, 'utf-8');\n const chunks = chunkText(content, config.indexing.chunkSize, config.indexing.chunkOverlap);\n \n // Store file metadata in SQLite\n await sqlite.upsertFile(file, chunks);\n \n // Generate embeddings and store in Qdrant\n for (let i = 0; i < chunks.length; i++) {\n const chunk = chunks[i];\n const embedding = await generateEmbedding(chunk.content, config);\n // Generate a unique integer ID by combining hash and chunk index\n const hashNum = parseInt(file.hash.slice(0, 8), 16);\n const pointId = (hashNum % 1000000) * 1000 + parseInt(chunk.id);\n const point = {\n id: pointId,\n vector: embedding,\n payload: {\n filePath: file.path,\n chunkId: chunk.id,\n fileHash: file.hash,\n content: chunk.content,\n parentDirectories: file.parentDirs\n }\n };\n await qdrant.upsertPoints([point]);\n }\n \n indexed++;\n } catch (error) {\n skipped++;\n const errorMessage = error instanceof Error ? 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1	+ {"version":3,"file":"indexing.js","sources":["../src/indexing.ts"],"sourcesContent":["import { promises as fs } from 'fs';\nimport { join } from 'path';\nimport { Config } from './config.js';\nimport { \n FileInfo, \n ChunkInfo, \n normalizePath, \n getFileInfo, \n shouldIgnoreFile, \n isSupportedFileType,\n isDirectory,\n isFile\n} from './utils.js';\nimport { generateEmbedding } from './embedding.js';\nimport { initializeStorage, FileRecord } from './storage.js';\n\nexport interface ScanOptions {\n ignorePatterns: string[];\n maxFileSize: number;\n}\n\nexport interface IndexResult {\n indexed: number;\n skipped: number;\n errors: string[];\n}\n\nexport class IndexingError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'IndexingError';\n }\n}\n\nexport function chunkText(content: string, chunkSize: number, overlap: number): ChunkInfo[] {\n if (content.length <= chunkSize) {\n return [{\n id: '0',\n content,\n startIndex: 0,\n endIndex: content.length\n }];\n }\n \n const chunks: ChunkInfo[] = [];\n let startIndex = 0;\n let chunkId = 0;\n \n while (startIndex < content.length) {\n const endIndex = Math.min(startIndex + chunkSize, content.length);\n const chunkContent = content.slice(startIndex, endIndex);\n \n chunks.push({\n id: chunkId.toString(),\n content: chunkContent,\n startIndex,\n endIndex\n });\n \n chunkId++;\n const nextStart = endIndex - overlap;\n \n if (nextStart <= startIndex) {\n startIndex = startIndex + Math.max(1, chunkSize - overlap);\n } else {\n startIndex = nextStart;\n }\n \n if (startIndex >= content.length) break;\n }\n \n return chunks;\n}\n\nexport async function scanDirectory(dirPath: string, options: ScanOptions): Promise<FileInfo[]> {\n const files: FileInfo[] = [];\n const visited = new Set<string>();\n \n async function walkDirectory(currentPath: string): Promise<void> {\n const normalizedPath = normalizePath(currentPath);\n \n if (visited.has(normalizedPath)) {\n return;\n }\n visited.add(normalizedPath);\n \n try {\n if (shouldIgnoreFile(normalizedPath, options.ignorePatterns)) {\n return;\n }\n \n if (await isDirectory(normalizedPath)) {\n const entries = await fs.readdir(normalizedPath);\n \n for (const entry of entries) {\n const fullPath = join(normalizedPath, entry);\n await walkDirectory(fullPath);\n }\n } else if (await isFile(normalizedPath)) {\n if (!isSupportedFileType(normalizedPath)) {\n return;\n }\n \n const stats = await fs.stat(normalizedPath);\n if (stats.size > options.maxFileSize) {\n return;\n }\n \n const fileInfo = await getFileInfo(normalizedPath);\n files.push(fileInfo);\n }\n } catch (error) {\n throw new IndexingError(`Failed to scan directory: ${normalizedPath}`, error as Error);\n }\n }\n \n await walkDirectory(dirPath);\n return files;\n}\n\nexport async function getFileMetadata(filePath: string): Promise<FileInfo> {\n try {\n return await getFileInfo(filePath);\n } catch (error) {\n throw new IndexingError(`Failed to get file metadata`, error as Error);\n }\n}\n\nasync function shouldReprocessFile(filePath: string, existingRecord: FileRecord, config: Config): Promise<boolean> {\n try {\n const fs = await import('fs/promises');\n \n // Try modtime check first (fast path)\n const currentStats = await fs.stat(filePath);\n const existingModTime = new Date(existingRecord.modifiedTime);\n \n // If modtime is clearly older, likely unchanged\n if (currentStats.mtime <= existingModTime) {\n return false; // Skip processing\n }\n \n // If modtime suggests change, verify with hash\n const currentFileInfo = await getFileInfo(filePath);\n return currentFileInfo.hash !== existingRecord.hash;\n \n } catch (modtimeError) {\n // Graceful fallback: skip modtime, use hash only\n if (config.verbose) {\n console.log(`Warning: Could not check modification time for ${filePath}:`, modtimeError);\n }\n try {\n const currentFileInfo = await getFileInfo(filePath);\n return currentFileInfo.hash !== existingRecord.hash;\n } catch (hashError) {\n // If we can't hash either, assume changed to be safe\n if (config.verbose) {\n console.log(`Warning: Could not compute hash for ${filePath}:`, hashError);\n }\n return true;\n }\n }\n}\n\nexport async function indexDirectories(paths: string[], config: Config): Promise<IndexResult> {\n let indexed = 0;\n let skipped = 0;\n const errors: string[] = [];\n \n const scanOptions: ScanOptions = {\n ignorePatterns: config.indexing.ignorePatterns,\n maxFileSize: config.indexing.maxFileSize\n };\n \n // Initialize storage\n const { sqlite, qdrant } = await initializeStorage(config);\n \n for (const path of paths) {\n try {\n // Mark directory as indexing\n await sqlite.upsertDirectory(path, 'indexing');\n \n const files = await scanDirectory(path, scanOptions);\n \n for (const file of files) {\n try {\n // Check if file already exists and needs reprocessing\n const existingFile = await sqlite.getFile(file.path);\n \n if (existingFile) {\n const needsReprocessing = await shouldReprocessFile(file.path, existingFile, config);\n if (!needsReprocessing) {\n skipped++;\n continue; 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package/dist/storage.js CHANGED Viewed

@@ -14,7 +14,7 @@ class QdrantClient {
   }
   async healthCheck() {
     try {
-      const response = await fetch(`${this.config.storage.qdrantEndpoint}/health`);
+      const response = await fetch(`${this.config.storage.qdrantEndpoint}/healthz`);
       return response.ok;
     } catch {
       return false;
@@ -53,7 +53,8 @@ class QdrantClient {
         body: JSON.stringify({ points })
       });
       if (!response.ok) {
-        throw new Error(`Failed to upsert points: ${response.statusText}`);
+        const errorText = await response.text();
+        throw new Error(`Failed to upsert points: ${response.status} ${response.statusText} - ${errorText}`);
       }
     } catch (error) {
       throw new StorageError(`Failed to upsert points to Qdrant`, error);
@@ -100,6 +101,31 @@ class QdrantClient {
       throw new StorageError(`Failed to delete points from Qdrant`, error);
     }
   }
+  async deletePointsByFileHash(fileHash) {
+    const collectionName = this.config.storage.qdrantCollection;
+    try {
+      const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/delete`, {
+        method: "POST",
+        headers: { "Content-Type": "application/json" },
+        body: JSON.stringify({
+          filter: {
+            must: [
+              {
+                key: "fileHash",
+                match: { value: fileHash }
+              }
+            ]
+          }
+        })
+      });
+      if (!response.ok) {
+        const errorText = await response.text();
+        throw new Error(`Failed to delete points by file hash: ${response.status} ${response.statusText} - ${errorText}`);
+      }
+    } catch (error) {
+      throw new StorageError(`Failed to delete points by file hash from Qdrant`, error);
+    }
+  }
 }
 class SQLiteStorage {
   constructor(config) {
@@ -174,7 +200,7 @@ class SQLiteStorage {
         id: row.id,
         path: row.path,
         size: row.size,
-        modifiedTime: new Date(row.modified_time),
+        modifiedTime: new Date(row.modified_time * 1e3),
         hash: row.hash,
         parentDirs: JSON.parse(row.parent_dirs),
         chunks: row.chunks_json ? JSON.parse(row.chunks_json) : [],
@@ -219,7 +245,7 @@ class SQLiteStorage {
         id: row.id,
         path: row.path,
         size: row.size,
-        modifiedTime: new Date(row.modified_time),
+        modifiedTime: new Date(row.modified_time * 1e3),
         hash: row.hash,
         parentDirs: JSON.parse(row.parent_dirs),
         chunks: row.chunks_json ? JSON.parse(row.chunks_json) : [],
@@ -242,6 +268,50 @@ async function initializeStorage(config) {
 async function initDatabase(dbPath) {
   return new Database(dbPath);
 }
+async function checkQdrantConsistency(sqlite, config) {
+  const issues = [];
+  try {
+    const qdrant = new QdrantClient(config);
+    const isHealthy = await qdrant.healthCheck();
+    if (!isHealthy) {
+      issues.push("Qdrant vector database is not running or accessible");
+      return { isConsistent: false, issues };
+    }
+    const filesWithChunksStmt = sqlite.db.prepare("SELECT COUNT(*) as count FROM files WHERE chunks_json IS NOT NULL");
+    const filesWithChunks = filesWithChunksStmt.get();
+    const totalChunksStmt = sqlite.db.prepare("SELECT SUM(json_array_length(chunks_json)) as count FROM files WHERE chunks_json IS NOT NULL");
+    const totalChunks = totalChunksStmt.get();
+    if (filesWithChunks.count > 0 && (totalChunks.count || 0) === 0) {
+      issues.push("Files exist but no chunks found - possible data corruption");
+    }
+    const collectionName = config.storage.qdrantCollection;
+    try {
+      const response = await fetch(`${config.storage.qdrantEndpoint}/collections/${collectionName}`);
+      if (!response.ok) {
+        issues.push(`Vector collection '${collectionName}' not found (normal during first-time setup)`);
+        return { isConsistent: false, issues };
+      }
+      const collectionInfo = await response.json();
+      const qdrantPointCount = collectionInfo.result?.points_count || 0;
+      const sqliteChunkCount = totalChunks.count || 0;
+      if (Math.abs(qdrantPointCount - sqliteChunkCount) > 0) {
+        if (qdrantPointCount > sqliteChunkCount) {
+          issues.push(`Extra vectors in database: ${qdrantPointCount} vectors vs ${sqliteChunkCount} indexed chunks (normal during cleanup)`);
+        } else {
+          issues.push(`Missing vectors: ${sqliteChunkCount} indexed chunks vs ${qdrantPointCount} vectors (normal during indexing)`);
+        }
+      }
+    } catch (error) {
+      issues.push(`Cannot verify vector database status: ${error}`);
+    }
+  } catch (error) {
+    issues.push(`Database status check failed: ${error}`);
+  }
+  return {
+    isConsistent: issues.length === 0,
+    issues
+  };
+}
 async function getIndexStatus() {
   const config = await import("./config.js").then((m) => m.loadConfig());
   const sqlite = new SQLiteStorage(config);
@@ -252,7 +322,7 @@ async function getIndexStatus() {
     const filesCount = filesStmt.get();
     const chunksStmt = sqlite.db.prepare("SELECT SUM(json_array_length(chunks_json)) as count FROM files WHERE chunks_json IS NOT NULL");
     const chunksCount = chunksStmt.get();
-    const lastIndexedStmt = sqlite.db.prepare("SELECT MAX(indexed_at) as last_indexed FROM directories");
+    const lastIndexedStmt = sqlite.db.prepare("SELECT MAX(indexed_at) as last_indexed FROM directories WHERE indexed_at > 0");
     const lastIndexedResult = lastIndexedStmt.get();
     const errorsStmt = sqlite.db.prepare("SELECT errors_json FROM files WHERE errors_json IS NOT NULL");
     const errorRows = errorsStmt.all();
@@ -265,6 +335,44 @@ async function getIndexStatus() {
         allErrors.push("Failed to parse error JSON");
       }
     });
+    const directoriesDetailStmt = sqlite.db.prepare(`
+      SELECT
+        d.path,
+        d.status,
+        d.indexed_at,
+        COUNT(f.id) as files_count,
+        COALESCE(SUM(json_array_length(f.chunks_json)), 0) as chunks_count
+      FROM directories d
+      LEFT JOIN files f ON f.parent_dirs LIKE '%' || d.path || '%'
+      GROUP BY d.id, d.path, d.status, d.indexed_at
+      ORDER BY d.indexed_at DESC
+    `);
+    const directoryDetails = directoriesDetailStmt.all();
+    const directories = directoryDetails.map((row) => {
+      const errorsByDirStmt = sqlite.db.prepare(`
+        SELECT errors_json FROM files
+        WHERE parent_dirs LIKE '%' || ? || '%' AND errors_json IS NOT NULL
+      `);
+      const dirErrors = errorsByDirStmt.all(row.path);
+      const dirErrorsList = [];
+      dirErrors.forEach((errorRow) => {
+        try {
+          const errors = JSON.parse(errorRow.errors_json);
+          dirErrorsList.push(...errors);
+        } catch {
+          dirErrorsList.push("Failed to parse error JSON");
+        }
+      });
+      return {
+        path: row.path,
+        status: row.status,
+        filesCount: row.files_count,
+        chunksCount: row.chunks_count,
+        lastIndexed: row.indexed_at && row.indexed_at > 0 ? new Date(row.indexed_at).toISOString() : null,
+        errors: dirErrorsList
+      };
+    });
+    const qdrantConsistency = await checkQdrantConsistency(sqlite, config);
     const fs = await import("fs");
     let databaseSize = "0 KB";
     try {
@@ -286,7 +394,9 @@ async function getIndexStatus() {
       chunksIndexed: chunksCount.count || 0,
       databaseSize,
       lastIndexed: lastIndexedResult.last_indexed ? new Date(lastIndexedResult.last_indexed).toISOString() : null,
-      errors: allErrors
+      errors: allErrors,
+      directories,
+      qdrantConsistency
     };
   } finally {
     sqlite.close();

package/dist/storage.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"storage.js","sources":["../src/storage.ts"],"sourcesContent":["import Database from 'better-sqlite3';\nimport { Config } from './config.js';\nimport { FileInfo, ChunkInfo, ensureDirectory } from './utils.js';\nimport { dirname } from 'path';\n\nexport interface DirectoryRecord {\n id: number;\n path: string;\n status: 'pending' \| 'indexing' \| 'completed' \| 'failed';\n indexedAt: Date;\n}\n\nexport interface FileRecord {\n id: number;\n path: string;\n size: number;\n modifiedTime: Date;\n hash: string;\n parentDirs: string[];\n chunks: ChunkInfo[];\n errors?: string[];\n}\n\nexport interface QdrantPoint {\n id: string \| number;\n vector: number[];\n payload: {\n filePath: string;\n chunkId: string;\n parentDirectories: string[];\n };\n score?: number;\n}\n\nexport class StorageError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'StorageError';\n }\n}\n\nexport class QdrantClient {\n constructor(private config: Config) {}\n\n async healthCheck(): Promise<boolean> {\n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/health`);\n return response.ok;\n } catch {\n return false;\n }\n }\n\n async createCollection(): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const checkResponse = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}`);\n if (checkResponse.ok) {\n return;\n }\n\n const createResponse = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}`, {\n method: 'PUT',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n vectors: {\n size: 768,\n distance: 'Cosine'\n }\n })\n });\n\n if (!createResponse.ok) {\n throw new Error(`Failed to create collection: ${createResponse.statusText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to create Qdrant collection`, error as Error);\n }\n }\n\n async upsertPoints(points: QdrantPoint[]): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points`, {\n method: 'PUT',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({ points })\n });\n\n if (!response.ok) {\n throw new Error(`Failed to upsert points: ${response.statusText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to upsert points to Qdrant`, error as Error);\n }\n }\n\n async searchPoints(vector: number[], limit: number = 10): Promise<QdrantPoint[]> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/search`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n vector,\n limit,\n with_payload: true\n })\n });\n\n if (!response.ok) {\n throw new Error(`Failed to search points: ${response.statusText}`);\n }\n\n const data = await response.json();\n return data.result.map((item: any) => ({\n id: item.id,\n vector: item.vector,\n payload: item.payload,\n score: item.score\n }));\n } catch (error) {\n throw new StorageError(`Failed to search points in Qdrant`, error as Error);\n }\n }\n\n async deletePoints(ids: string[]): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/delete`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({ points: ids })\n });\n\n if (!response.ok) {\n throw new Error(`Failed to delete points: ${response.statusText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to delete points from Qdrant`, error as Error);\n }\n }\n}\n\nexport class SQLiteStorage {\n public db: Database.Database;\n\n constructor(private config: Config) {\n this.db = this.initializeDatabase();\n }\n\n private initializeDatabase(): Database.Database {\n try {\n ensureDirectory(dirname(this.config.storage.sqlitePath));\n \n const db = new Database(this.config.storage.sqlitePath);\n \n db.exec(`\n CREATE TABLE IF NOT EXISTS directories (\n id INTEGER PRIMARY KEY,\n path TEXT UNIQUE NOT NULL,\n status TEXT DEFAULT 'pending',\n indexed_at INTEGER DEFAULT 0\n );\n\n CREATE TABLE IF NOT EXISTS files (\n id INTEGER PRIMARY KEY,\n path TEXT UNIQUE NOT NULL,\n size INTEGER NOT NULL,\n modified_time INTEGER NOT NULL,\n hash TEXT NOT NULL,\n parent_dirs TEXT NOT NULL,\n chunks_json TEXT,\n errors_json TEXT\n );\n\n CREATE INDEX IF NOT EXISTS idx_files_path ON files(path);\n CREATE INDEX IF NOT EXISTS idx_files_hash ON files(hash);\n CREATE INDEX IF NOT EXISTS idx_directories_path ON directories(path);\n `);\n\n return db;\n } catch (error) {\n throw new StorageError(`Failed to initialize SQLite database`, error 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1	+ {"version":3,"file":"storage.js","sources":["../src/storage.ts"],"sourcesContent":["import Database from 'better-sqlite3';\nimport { Config } from './config.js';\nimport { FileInfo, ChunkInfo, ensureDirectory } from './utils.js';\nimport { dirname } from 'path';\n\nexport interface DirectoryRecord {\n id: number;\n path: string;\n status: 'pending' \| 'indexing' \| 'completed' \| 'failed';\n indexedAt: Date;\n}\n\nexport interface FileRecord {\n id: number;\n path: string;\n size: number;\n modifiedTime: Date;\n hash: string;\n parentDirs: string[];\n chunks: ChunkInfo[];\n errors?: string[];\n}\n\nexport interface QdrantPoint {\n id: string \| number;\n vector: number[];\n payload: {\n filePath: string;\n chunkId: string;\n parentDirectories: string[];\n };\n score?: number;\n}\n\nexport class StorageError extends Error {\n constructor(message: string, public override cause?: Error) {\n super(message);\n this.name = 'StorageError';\n }\n}\n\nexport class QdrantClient {\n constructor(private config: Config) {}\n\n async healthCheck(): Promise<boolean> {\n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/healthz`);\n return response.ok;\n } catch {\n return false;\n }\n }\n\n async createCollection(): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const checkResponse = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}`);\n if (checkResponse.ok) {\n return;\n }\n\n const createResponse = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}`, {\n method: 'PUT',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n vectors: {\n size: 768,\n distance: 'Cosine'\n }\n })\n });\n\n if (!createResponse.ok) {\n throw new Error(`Failed to create collection: ${createResponse.statusText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to create Qdrant collection`, error as Error);\n }\n }\n\n async upsertPoints(points: QdrantPoint[]): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points`, {\n method: 'PUT',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({ points })\n });\n\n if (!response.ok) {\n const errorText = await response.text();\n throw new Error(`Failed to upsert points: ${response.status} ${response.statusText} - ${errorText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to upsert points to Qdrant`, error as Error);\n }\n }\n\n async searchPoints(vector: number[], limit: number = 10): Promise<QdrantPoint[]> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/search`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n vector,\n limit,\n with_payload: true\n })\n });\n\n if (!response.ok) {\n throw new Error(`Failed to search points: ${response.statusText}`);\n }\n\n const data = await response.json();\n return data.result.map((item: { id: string \| number; vector: number[]; payload: Record<string, unknown>; score: number }) => ({\n id: item.id,\n vector: item.vector,\n payload: item.payload,\n score: item.score\n }));\n } catch (error) {\n throw new StorageError(`Failed to search points in Qdrant`, error as Error);\n }\n }\n\n async deletePoints(ids: (string \| number)[]): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/delete`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({ points: ids })\n });\n\n if (!response.ok) {\n throw new Error(`Failed to delete points: ${response.statusText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to delete points from Qdrant`, error as Error);\n }\n }\n\n async deletePointsByFileHash(fileHash: string): Promise<void> {\n const collectionName = this.config.storage.qdrantCollection;\n \n try {\n const response = await fetch(`${this.config.storage.qdrantEndpoint}/collections/${collectionName}/points/delete`, {\n method: 'POST',\n headers: { 'Content-Type': 'application/json' },\n body: JSON.stringify({\n filter: {\n must: [\n {\n key: 'fileHash',\n match: { value: fileHash }\n }\n ]\n }\n })\n });\n\n if (!response.ok) {\n const errorText = await response.text();\n throw new Error(`Failed to delete points by file hash: ${response.status} ${response.statusText} - ${errorText}`);\n }\n } catch (error) {\n throw new StorageError(`Failed to delete points by file hash from Qdrant`, error as Error);\n }\n }\n}\n\nexport class SQLiteStorage {\n public db: Database.Database;\n\n constructor(private config: Config) {\n this.db = this.initializeDatabase();\n }\n\n private initializeDatabase(): Database.Database {\n try {\n ensureDirectory(dirname(this.config.storage.sqlitePath));\n \n const db = new Database(this.config.storage.sqlitePath);\n \n db.exec(`\n CREATE TABLE IF NOT EXISTS directories (\n id INTEGER PRIMARY KEY,\n path TEXT UNIQUE NOT NULL,\n status TEXT DEFAULT 'pending',\n indexed_at INTEGER DEFAULT 0\n );\n\n CREATE TABLE IF NOT EXISTS files (\n id INTEGER PRIMARY KEY,\n path TEXT UNIQUE NOT NULL,\n size INTEGER NOT NULL,\n modified_time INTEGER NOT NULL,\n hash TEXT NOT NULL,\n parent_dirs TEXT NOT NULL,\n chunks_json TEXT,\n errors_json TEXT\n );\n\n CREATE INDEX IF NOT EXISTS idx_files_path ON files(path);\n CREATE INDEX IF NOT EXISTS idx_files_hash ON files(hash);\n CREATE INDEX IF NOT EXISTS idx_directories_path ON directories(path);\n `);\n\n return db;\n } catch (error) {\n throw new StorageError(`Failed to initialize SQLite database`, error as Error);\n }\n }\n\n async getDirectory(path: string): Promise<DirectoryRecord \| null> {\n try {\n const stmt = this.db.prepare('SELECT * FROM directories WHERE path = ?');\n const row = stmt.get(path) as { id: number; path: string; status: 'pending' \| 'indexing' \| 'completed' \| 'failed'; indexed_at: number } \| undefined;\n \n if (!row) return null;\n \n return {\n id: row.id,\n path: row.path,\n status: row.status,\n indexedAt: new Date(row.indexed_at)\n };\n } catch (error) {\n throw new StorageError(`Failed to get directory record`, error as Error);\n }\n }\n\n async upsertDirectory(path: string, status: DirectoryRecord['status']): Promise<void> {\n try {\n const stmt = this.db.prepare(`\n INSERT OR REPLACE INTO directories (path, status, indexed_at)\n VALUES (?, ?, ?)\n `);\n \n stmt.run(path, status, Date.now());\n } catch (error) {\n throw new StorageError(`Failed to upsert directory record`, error as Error);\n }\n }\n\n async getFile(path: string): Promise<FileRecord \| null> {\n try {\n const stmt = this.db.prepare('SELECT * FROM files WHERE path = ?');\n const row = stmt.get(path) as { id: number; path: string; size: number; modified_time: number; hash: string; parent_dirs: string; chunks_json: string \| null; errors_json: string \| null } \| undefined;\n \n if (!row) return null;\n \n return {\n id: row.id,\n path: row.path,\n size: row.size,\n modifiedTime: new Date(row.modified_time * 1000),\n hash: row.hash,\n parentDirs: JSON.parse(row.parent_dirs),\n chunks: row.chunks_json ? JSON.parse(row.chunks_json) : [],\n errors: row.errors_json ? JSON.parse(row.errors_json) : undefined\n };\n } catch (error) {\n throw new StorageError(`Failed to get file record`, error as Error);\n }\n }\n\n async upsertFile(fileInfo: FileInfo, chunks: ChunkInfo[] = [], errors: string[] = []): Promise<void> {\n try {\n const stmt = this.db.prepare(`\n INSERT OR REPLACE INTO files (path, size, modified_time, hash, parent_dirs, chunks_json, errors_json)\n VALUES (?, ?, ?, ?, ?, ?, ?)\n `);\n \n stmt.run(\n fileInfo.path,\n fileInfo.size,\n fileInfo.modifiedTime.getTime(),\n fileInfo.hash,\n JSON.stringify(fileInfo.parentDirs),\n chunks.length > 0 ? JSON.stringify(chunks) : null,\n errors.length > 0 ? JSON.stringify(errors) : null\n );\n } catch (error) {\n throw new StorageError(`Failed to upsert file record`, error as Error);\n }\n }\n\n async deleteFile(path: string): Promise<void> {\n try {\n const stmt = this.db.prepare('DELETE FROM files WHERE path = ?');\n stmt.run(path);\n } catch (error) {\n throw new StorageError(`Failed to delete file record`, error as Error);\n }\n }\n\n async getFilesByDirectory(directoryPath: string): Promise<FileRecord[]> {\n try {\n const stmt = this.db.prepare('SELECT * FROM files WHERE path LIKE ?');\n const rows = stmt.all(`${directoryPath}%`) as { id: number; path: string; size: number; modified_time: number; hash: string; parent_dirs: string; chunks_json: string \| null; errors_json: string \| null }[];\n \n return rows.map(row => ({\n id: row.id,\n path: row.path,\n size: row.size,\n modifiedTime: new Date(row.modified_time * 1000),\n hash: row.hash,\n parentDirs: JSON.parse(row.parent_dirs),\n chunks: row.chunks_json ? JSON.parse(row.chunks_json) : [],\n errors: row.errors_json ? JSON.parse(row.errors_json) : undefined\n }));\n } catch (error) {\n throw new StorageError(`Failed to get files by directory`, error as Error);\n }\n }\n\n close(): void {\n this.db.close();\n }\n}\n\nexport async function initializeStorage(config: Config): Promise<{ sqlite: SQLiteStorage; qdrant: QdrantClient }> {\n const sqlite = new SQLiteStorage(config);\n const qdrant = new QdrantClient(config);\n \n await qdrant.createCollection();\n \n return { sqlite, qdrant };\n}\n\nexport async function initDatabase(dbPath: string): Promise<Database.Database> {\n return new Database(dbPath);\n}\n\nexport interface DirectoryStatus {\n path: string;\n status: string;\n filesCount: number;\n chunksCount: number;\n lastIndexed: string \| null;\n errors: string[];\n}\n\nexport interface IndexStatus {\n directoriesIndexed: number;\n filesIndexed: number;\n chunksIndexed: number;\n databaseSize: string;\n lastIndexed: string \| null;\n errors: string[];\n directories: DirectoryStatus[];\n qdrantConsistency: {\n isConsistent: boolean;\n issues: string[];\n };\n}\n\nasync function checkQdrantConsistency(sqlite: SQLiteStorage, config: Config): Promise<{ isConsistent: boolean; issues: string[] }> {\n const issues: string[] = [];\n \n try {\n const qdrant = new QdrantClient(config);\n const isHealthy = await qdrant.healthCheck();\n \n if (!isHealthy) {\n issues.push('Qdrant vector database is not running or accessible');\n return { isConsistent: false, issues };\n }\n \n const filesWithChunksStmt = sqlite.db.prepare('SELECT COUNT() as count FROM files WHERE chunks_json IS NOT NULL');\n const filesWithChunks = filesWithChunksStmt.get() as { count: number };\n \n const totalChunksStmt = sqlite.db.prepare('SELECT SUM(json_array_length(chunks_json)) as count FROM files WHERE chunks_json IS NOT NULL');\n const totalChunks = totalChunksStmt.get() as { count: number \| null };\n \n if (filesWithChunks.count > 0 && (totalChunks.count \|\| 0) === 0) {\n issues.push('Files exist but no chunks found - possible data corruption');\n }\n \n const collectionName = config.storage.qdrantCollection;\n try {\n const response = await fetch(`${config.storage.qdrantEndpoint}/collections/${collectionName}`);\n if (!response.ok) {\n issues.push(`Vector collection '${collectionName}' not found (normal during first-time setup)`);\n return { isConsistent: false, issues };\n }\n \n const collectionInfo = await response.json();\n const qdrantPointCount = collectionInfo.result?.points_count \|\| 0;\n const sqliteChunkCount = totalChunks.count \|\| 0;\n \n if (Math.abs(qdrantPointCount - sqliteChunkCount) > 0) {\n if (qdrantPointCount > sqliteChunkCount) {\n issues.push(`Extra vectors in database: ${qdrantPointCount} vectors vs ${sqliteChunkCount} indexed chunks (normal during cleanup)`);\n } else {\n issues.push(`Missing vectors: ${sqliteChunkCount} indexed chunks vs ${qdrantPointCount} vectors (normal during indexing)`);\n }\n }\n } catch (error) {\n issues.push(`Cannot verify vector database status: ${error}`);\n }\n \n } catch (error) {\n issues.push(`Database status check failed: ${error}`);\n }\n \n return {\n isConsistent: issues.length === 0,\n issues\n };\n}\n\nexport async function getIndexStatus(): Promise<IndexStatus> {\n const config = await import('./config.js').then(m => m.loadConfig());\n const sqlite = new SQLiteStorage(config);\n \n try {\n const directoriesStmt = sqlite.db.prepare('SELECT COUNT() as count FROM directories WHERE status = ?');\n const directoriesCount = directoriesStmt.get('completed') as { count: number };\n \n const filesStmt = sqlite.db.prepare('SELECT COUNT() as count FROM files');\n const filesCount = filesStmt.get() as { count: number };\n \n const chunksStmt = sqlite.db.prepare('SELECT SUM(json_array_length(chunks_json)) as count FROM files WHERE chunks_json IS NOT NULL');\n const chunksCount = chunksStmt.get() as { count: number \| null };\n \n const lastIndexedStmt = sqlite.db.prepare('SELECT MAX(indexed_at) as last_indexed FROM directories WHERE indexed_at > 0');\n const lastIndexedResult = lastIndexedStmt.get() as { last_indexed: number \| null };\n \n const errorsStmt = sqlite.db.prepare('SELECT errors_json FROM files WHERE errors_json IS NOT NULL');\n const errorRows = errorsStmt.all() as { errors_json: string }[];\n \n const allErrors: string[] = [];\n errorRows.forEach(row => {\n try {\n const errors = JSON.parse(row.errors_json);\n allErrors.push(...errors);\n } catch {\n allErrors.push('Failed to parse error JSON');\n }\n });\n \n const directoriesDetailStmt = sqlite.db.prepare(`\n SELECT \n d.path,\n d.status,\n d.indexed_at,\n COUNT(f.id) as files_count,\n COALESCE(SUM(json_array_length(f.chunks_json)), 0) as chunks_count\n FROM directories d\n LEFT JOIN files f ON f.parent_dirs LIKE '%' \|\| d.path \|\| '%'\n GROUP BY d.id, d.path, d.status, d.indexed_at\n ORDER BY d.indexed_at DESC\n `);\n const directoryDetails = directoriesDetailStmt.all() as { id: number; path: string; status: 'pending' \| 'indexing' \| 'completed' \| 'failed'; indexed_at: number; files_count: number; chunks_count: number }[];\n \n const directories: DirectoryStatus[] = directoryDetails.map(row => {\n const errorsByDirStmt = sqlite.db.prepare(`\n SELECT errors_json FROM files \n WHERE parent_dirs LIKE '%' \|\| ? \|\| '%' AND errors_json IS NOT NULL\n `);\n const dirErrors = errorsByDirStmt.all(row.path) as { errors_json: string }[];\n \n const dirErrorsList: string[] = [];\n dirErrors.forEach(errorRow => {\n try {\n const errors = JSON.parse(errorRow.errors_json);\n dirErrorsList.push(...errors);\n } catch {\n dirErrorsList.push('Failed to parse error JSON');\n }\n });\n \n return {\n path: row.path,\n status: row.status,\n filesCount: row.files_count,\n chunksCount: row.chunks_count,\n lastIndexed: row.indexed_at && row.indexed_at > 0 ? new Date(row.indexed_at).toISOString() : null,\n errors: dirErrorsList\n };\n });\n \n const qdrantConsistency = await checkQdrantConsistency(sqlite, config);\n \n const fs = await import('fs');\n let databaseSize = '0 KB';\n try {\n const stats = fs.statSync(config.storage.sqlitePath);\n const sizeInBytes = stats.size;\n if (sizeInBytes > 1024 1024) {\n databaseSize = `${(sizeInBytes / (1024 * 1024)).toFixed(2)} MB`;\n } else if (sizeInBytes > 1024) {\n databaseSize = `${(sizeInBytes / 1024).toFixed(2)} KB`;\n } else {\n databaseSize = `${sizeInBytes} bytes`;\n }\n } catch {\n databaseSize = 'Unknown';\n }\n \n return {\n directoriesIndexed: directoriesCount.count,\n filesIndexed: filesCount.count,\n chunksIndexed: chunksCount.count \|\| 0,\n databaseSize,\n lastIndexed: lastIndexedResult.last_indexed ? new Date(lastIndexedResult.last_indexed).toISOString() : null,\n errors: allErrors,\n directories,\n qdrantConsistency\n };\n } finally {\n sqlite.close();\n 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package/package.json CHANGED Viewed

@@ -1,10 +1,10 @@
 {
   "name": "directory-indexer",
-  "version": "0.0.12",
+  "version": "0.0.14",
   "description": "AI-powered directory indexing with semantic search for MCP servers",
   "main": "dist/cli.js",
   "bin": {
-    "directory-indexer": "dist/cli.js"
+    "directory-indexer": "bin/directory-indexer.js"
   },
   "type": "module",
   "scripts": {
@@ -18,7 +18,8 @@
     "lint": "eslint src tests --ext .ts",
     "typecheck": "tsc --noEmit",
     "clean": "rimraf dist",
-    "prepare": "npm run build"
+    "prepare": "npm run build",
+    "cli": "node bin/directory-indexer.js"
   },
   "keywords": [
     "mcp",
@@ -42,7 +43,8 @@
     "node": ">=18.0.0"
   },
   "files": [
-    "dist/"
+    "dist/",
+    "bin/"
   ],
   "dependencies": {
     "@modelcontextprotocol/sdk": "^0.6.0",