diff-grok 1.0.9 → 1.0.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.github/ISSUE_TEMPLATE/bug_report.md +29 -0
- package/.github/ISSUE_TEMPLATE/feature_request.md +20 -0
- package/.github/PULL_REQUEST_TEMPLATE.md +22 -0
- package/.github/workflows/deploy-docs.yml +15 -0
- package/CONTRIBUTING.md +74 -0
- package/README.MD +183 -5
- package/docs/.nojekyll +1 -0
- package/docs/assets/hierarchy.js +1 -0
- package/docs/assets/highlight.css +99 -0
- package/docs/assets/icons.js +18 -0
- package/docs/assets/icons.svg +1 -0
- package/docs/assets/main.js +60 -0
- package/docs/assets/navigation.js +1 -0
- package/docs/assets/search.js +1 -0
- package/docs/assets/style.css +1633 -0
- package/docs/classes/BasicModelPipelineCreator.html +10 -0
- package/docs/classes/Callback.html +7 -0
- package/docs/classes/CyclicModelPipelineCreator.html +10 -0
- package/docs/classes/IterCheckerCallback.html +8 -0
- package/docs/classes/PipelineCreator.html +6 -0
- package/docs/classes/TimeCheckerCallback.html +8 -0
- package/docs/classes/UpdatesModelPipelineCreator.html +10 -0
- package/docs/functions/applyPipeline.html +9 -0
- package/docs/functions/getCallback.html +3 -0
- package/docs/functions/getIVP.html +6 -0
- package/docs/functions/getInputVector.html +2 -0
- package/docs/functions/getIvp2WebWorker.html +6 -0
- package/docs/functions/getJScode.html +6 -0
- package/docs/functions/getOutputNames.html +4 -0
- package/docs/functions/getPipelineCreator.html +7 -0
- package/docs/functions/mrt.html +11 -0
- package/docs/functions/printE5.html +76 -0
- package/docs/functions/printHires.html +76 -0
- package/docs/functions/printOrego.html +66 -0
- package/docs/functions/printPollution.html +163 -0
- package/docs/functions/printRobertson.html +60 -0
- package/docs/functions/printVdpol.html +66 -0
- package/docs/functions/ros34prw.html +8 -0
- package/docs/functions/ros3prw.html +8 -0
- package/docs/functions/solveIvp.html +5 -0
- package/docs/hierarchy.html +1 -0
- package/docs/index.html +683 -0
- package/docs/media/CONTRIBUTING.md +74 -0
- package/docs/media/POLL.png +0 -0
- package/docs/media/VDPOL.png +0 -0
- package/docs/media/acid-prod.gif +0 -0
- package/docs/media/basic-use.js +40 -0
- package/docs/media/basic-use.js.map +1 -0
- package/docs/media/basic-use.ts +44 -0
- package/docs/media/check-methods.js +59 -0
- package/docs/media/check-methods.js.map +1 -0
- package/docs/media/check-methods.ts +81 -0
- package/docs/media/corr-probs.js +132 -0
- package/docs/media/corr-probs.js.map +1 -0
- package/docs/media/corr-probs.ts +155 -0
- package/docs/media/cyclic-model.js +100 -0
- package/docs/media/cyclic-model.js.map +1 -0
- package/docs/media/cyclic-model.ts +110 -0
- package/docs/media/e5.js +36 -0
- package/docs/media/e5.js.map +1 -0
- package/docs/media/e5.ts +36 -0
- package/docs/media/hires.js +39 -0
- package/docs/media/hires.js.map +1 -0
- package/docs/media/hires.ts +40 -0
- package/docs/media/model-updates.js +112 -0
- package/docs/media/model-updates.js.map +1 -0
- package/docs/media/model-updates.ts +122 -0
- package/docs/media/orego.js +24 -0
- package/docs/media/orego.js.map +1 -0
- package/docs/media/orego.ts +25 -0
- package/docs/media/pipeline-use.js +87 -0
- package/docs/media/pipeline-use.js.map +1 -0
- package/docs/media/pipeline-use.ts +98 -0
- package/docs/media/pollution.js +132 -0
- package/docs/media/pollution.js.map +1 -0
- package/docs/media/pollution.ts +133 -0
- package/docs/media/print-benchmark.js +581 -0
- package/docs/media/print-benchmark.js.map +1 -0
- package/docs/media/print-benchmark.ts +594 -0
- package/docs/media/robertson.js +19 -0
- package/docs/media/robertson.js.map +1 -0
- package/docs/media/robertson.ts +19 -0
- package/docs/media/scripting.js +30 -0
- package/docs/media/scripting.js.map +1 -0
- package/docs/media/scripting.ts +35 -0
- package/docs/media/vdpol.js +17 -0
- package/docs/media/vdpol.js.map +1 -0
- package/docs/media/vdpol.ts +17 -0
- package/docs/modules.html +1 -0
- package/docs/types/Arg.html +12 -0
- package/docs/types/DifEqs.html +8 -0
- package/docs/types/Func.html +7 -0
- package/docs/types/IVP.html +40 -0
- package/docs/types/IVP2WebWorker.html +12 -0
- package/docs/types/Input.html +8 -0
- package/docs/types/Loop.html +7 -0
- package/docs/types/ODEs.html +31 -0
- package/docs/types/Output.html +6 -0
- package/docs/types/Pipeline.html +6 -0
- package/docs/types/SolverOptions.html +8 -0
- package/docs/types/Update.html +9 -0
- package/docs/types/Wrapper.html +8 -0
- package/images/POLL.png +0 -0
- package/images/VDPOL.png +0 -0
- package/index.js +2 -2
- package/index.js.map +1 -1
- package/index.ts +6 -5
- package/package.json +2 -1
- package/src/examples/check-methods.js +23 -9
- package/src/examples/check-methods.js.map +1 -1
- package/src/examples/check-methods.ts +28 -9
- package/src/examples/corr-probs.js +3 -1
- package/src/examples/corr-probs.js.map +1 -1
- package/src/examples/corr-probs.ts +7 -3
- package/src/examples/e5.js +6 -0
- package/src/examples/e5.js.map +1 -1
- package/src/examples/e5.ts +7 -0
- package/src/examples/hires.js +10 -0
- package/src/examples/hires.js.map +1 -1
- package/src/examples/hires.ts +11 -0
- package/src/examples/index.js +21 -7
- package/src/examples/index.js.map +1 -1
- package/src/examples/index.ts +23 -7
- package/src/examples/orego.js +5 -0
- package/src/examples/orego.js.map +1 -1
- package/src/examples/orego.ts +6 -0
- package/src/examples/pollution.js +22 -0
- package/src/examples/pollution.js.map +1 -1
- package/src/examples/pollution.ts +23 -0
- package/src/examples/print-benchmark.js +581 -0
- package/src/examples/print-benchmark.js.map +1 -0
- package/src/examples/print-benchmark.ts +594 -0
- package/src/examples/robertson.js +6 -1
- package/src/examples/robertson.js.map +1 -1
- package/src/examples/robertson.ts +7 -1
- package/src/examples/scripting.js +1 -1
- package/src/examples/scripting.js.map +1 -1
- package/src/examples/scripting.ts +1 -1
- package/src/examples/vdpol.js +4 -0
- package/src/examples/vdpol.js.map +1 -1
- package/src/examples/vdpol.ts +5 -0
- package/src/pipeline/basic-pipeline-creator.js +96 -1
- package/src/pipeline/basic-pipeline-creator.js.map +1 -1
- package/src/pipeline/basic-pipeline-creator.ts +97 -1
- package/src/pipeline/loops-pipeline-creator.js +115 -2
- package/src/pipeline/loops-pipeline-creator.js.map +1 -1
- package/src/pipeline/loops-pipeline-creator.ts +116 -2
- package/src/pipeline/output.js +7 -2
- package/src/pipeline/output.js.map +1 -1
- package/src/pipeline/output.ts +7 -2
- package/src/pipeline/pipeline-creator.js.map +1 -1
- package/src/pipeline/pipeline-creator.ts +4 -0
- package/src/pipeline/pipeline.js +193 -2
- package/src/pipeline/pipeline.js.map +1 -1
- package/src/pipeline/pipeline.ts +206 -4
- package/src/pipeline/updates-pipeline-creator.js +130 -2
- package/src/pipeline/updates-pipeline-creator.js.map +1 -1
- package/src/pipeline/updates-pipeline-creator.ts +131 -2
- package/src/scripting-tools/constants.js +18 -4
- package/src/scripting-tools/constants.js.map +1 -1
- package/src/scripting-tools/constants.ts +22 -4
- package/src/scripting-tools/index.js.map +1 -1
- package/src/scripting-tools/index.ts +3 -2
- package/src/scripting-tools/model-error.js +3 -1
- package/src/scripting-tools/model-error.js.map +1 -1
- package/src/scripting-tools/model-error.ts +3 -1
- package/src/scripting-tools/scripting-tools.js +139 -9
- package/src/scripting-tools/scripting-tools.js.map +1 -1
- package/src/scripting-tools/scripting-tools.ts +228 -21
- package/src/solver-tools/callbacks/callback-base.js +2 -0
- package/src/solver-tools/callbacks/callback-base.js.map +1 -1
- package/src/solver-tools/callbacks/callback-base.ts +4 -0
- package/src/solver-tools/callbacks/callback-tools.js +3 -1
- package/src/solver-tools/callbacks/callback-tools.js.map +1 -1
- package/src/solver-tools/callbacks/callback-tools.ts +3 -1
- package/src/solver-tools/callbacks/iter-checker-callback.js +4 -0
- package/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -1
- package/src/solver-tools/callbacks/iter-checker-callback.ts +4 -0
- package/src/solver-tools/callbacks/time-checker-callback.js +4 -0
- package/src/solver-tools/callbacks/time-checker-callback.js.map +1 -1
- package/src/solver-tools/callbacks/time-checker-callback.ts +4 -0
- package/src/solver-tools/index.js +3 -0
- package/src/solver-tools/index.js.map +1 -1
- package/src/solver-tools/index.ts +3 -0
- package/src/solver-tools/mrt-method.js +40 -1
- package/src/solver-tools/mrt-method.js.map +1 -1
- package/src/solver-tools/mrt-method.ts +40 -1
- package/src/solver-tools/ros34prw-method.js +39 -1
- package/src/solver-tools/ros34prw-method.js.map +1 -1
- package/src/solver-tools/ros34prw-method.ts +39 -1
- package/src/solver-tools/ros3prw-method.js +39 -1
- package/src/solver-tools/ros3prw-method.js.map +1 -1
- package/src/solver-tools/ros3prw-method.ts +39 -1
- package/src/solver-tools/solver-defs.js +9 -3
- package/src/solver-tools/solver-defs.js.map +1 -1
- package/src/solver-tools/solver-defs.ts +85 -7
- package/src/worker-tools/scripting.js +95 -1
- package/src/worker-tools/scripting.js.map +1 -1
- package/src/worker-tools/scripting.ts +104 -2
- package/src/worker-tools/solving.js +5 -1
- package/src/worker-tools/solving.js.map +1 -1
- package/src/worker-tools/solving.ts +5 -1
- package/typedoc.json +8 -0
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printE5 | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printE5</a></li></ul><h1>Function printE5</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printe5"><span class="tsd-kind-call-signature">printE5</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printe5" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the E5 benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printE5</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printE5</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparison
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import numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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# -------------------------
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# 0. Solver method
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# -------------------------
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METHOD = "Radau" # stiff solver recommended
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# -------------------------
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# 1. Define E5 constants
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# -------------------------
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K1 = 7.89e-10
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K2 = 1.13e9
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K3 = 1.1e7
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K4 = 1.13e3
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# -------------------------
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# 2. Define E5 ODE
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# -------------------------
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def e5(t, y):
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y1, y2, y3, y4 = y
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dy = np.zeros(4)
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dy[0] = -K1 * y1 - K3 * y1 * y3
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dy[1] = K1 * y1 - K2 * y2 * y3
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dy[2] = K1 * y1 - K2 * y2 * y3 - K3 * y1 * y3 + K4 * y4
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dy[3] = K3 * y1 * y3 - K4 * y4
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return dy
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# -------------------------
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# 3. Initial conditions and time
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# -------------------------
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y0 = [0.00176, 0, 0, 0]
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t_start = 0.0
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t_end = 1e6
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t_step = 2.5e3
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# Ensure t_eval is within t_span
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n_points = int(np.ceil((t_end - t_start) / t_step)) + 1
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t_eval = np.linspace(t_start, t_end, n_points)
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# -------------------------
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# 4. Solve ODE
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# -------------------------
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sol = solve_ivp(
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e5,
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(t_start, t_end),
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=1e-6,
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atol=1e-6
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# -------------------------
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# 5. Save solution to CSV
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# -------------------------
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data = np.column_stack((sol.t, sol.y.T))
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col_names = ['t', 'y1', 'y2', 'y3', 'y4']
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df = pd.DataFrame(data, columns=col_names)
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filename = f"E5-using-{METHOD}.csv"
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df.to_csv(filename, index=False)
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print(f"Solution saved to '{filename}'")
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L421">src/examples/print-benchmark.ts:421</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printHires | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printHires</a></li></ul><h1>Function printHires</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printhires"><span class="tsd-kind-call-signature">printHires</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printhires" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the HIRES benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printHires</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printHires</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparison
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import numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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# -------------------------
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# 0. Solver method
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# -------------------------
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METHOD = "Radau" # stiff solver suitable for HIRES
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# -------------------------
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# 1. Define HIRES ODE
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# -------------------------
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def hires(t, y):
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y1, y2, y3, y4, y5, y6, y7, y8 = y
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dy = np.zeros(8)
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dy[0] = -1.71 * y1 + 0.43 * y2 + 8.32 * y3 + 0.0007
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dy[1] = 1.71 * y1 - 8.75 * y2
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dy[2] = -10.03 * y3 + 0.43 * y4 + 0.035 * y5
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dy[3] = 8.32 * y2 + 1.71 * y3 - 1.12 * y4
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dy[4] = -1.745 * y5 + 0.43 * y6 + 0.43 * y7
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dy[5] = -280 * y6 * y8 + 0.69 * y4 + 1.71 * y5 - 0.43 * y6 + 0.69 * y7
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dy[6] = 280 * y6 * y8 - 1.81 * y7
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dy[7] = -280 * y6 * y8 + 1.81 * y7
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return dy
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# -------------------------
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# 2. Initial conditions and time
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# -------------------------
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y0 = [1, 0, 0, 0, 0, 0, 0, 0.0057]
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t_start = 0.0
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t_end = 321.8122
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t_step = 0.01
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n_points = int(np.ceil((t_end - t_start) / t_step)) + 1
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t_eval = np.linspace(t_start, t_end, n_points)
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# -------------------------
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# 3. Solve ODE
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# -------------------------
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sol = solve_ivp(
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hires,
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t_span,
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=1e-10,
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atol=1e-10
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# -------------------------
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# 4. Save solution to CSV
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# -------------------------
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# Combine time + concentrations
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data = np.column_stack((sol.t, sol.y.T))
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# Column names
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col_names = ['t'] + ['y1','y2','y3','y4','y5','y6','y7','y8']
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# Create DataFrame and save
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df = pd.DataFrame(data, columns=col_names)
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filename = f'HIRES-using-{METHOD}.csv'
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df.to_csv(filename, index=False)
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print(f"Solution saved to '{filename}'")
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L187">src/examples/print-benchmark.ts:187</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printOrego | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printOrego</a></li></ul><h1>Function printOrego</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printorego"><span class="tsd-kind-call-signature">printOrego</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printorego" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the OREGO benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printOrego</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printOrego</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparison
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import numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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# -------------------------
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# 0. Solver method
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# -------------------------
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METHOD = "Radau" # stiff solver recommended
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# -------------------------
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# 1. Define OREGO ODE
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# -------------------------
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def orego(t, y):
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y1, y2, y3 = y
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dy1 = 77.27 * (y2 - y1 * y2 + y1 - 0.000008375 * y1**2)
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dy2 = ( -y2 - y1 * y2 + y3 ) / 77.27
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dy3 = 0.161 * (y1 - y3)
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return [dy1, dy2, dy3]
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# -------------------------
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# 2. Initial conditions and time
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# -------------------------
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y0 = [1, 2, 3]
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t_start = 0.0
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t_end = 360.0
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t_step = 0.01
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# Use linspace to ensure t_eval within t_span
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n_points = int(np.ceil((t_end - t_start) / t_step)) + 1
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t_eval = np.linspace(t_start, t_end, n_points)
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# -------------------------
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# 3. Solve ODE
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# -------------------------
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sol = solve_ivp(
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orego,
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(t_start, t_end),
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=1e-8,
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atol=1e-8
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# -------------------------
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# 4. Save solution to CSV
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# -------------------------
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data = np.column_stack((sol.t, sol.y.T))
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col_names = ['t', 'y1', 'y2', 'y3']
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df = pd.DataFrame(data, columns=col_names)
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filename = f"OREGO-using-{METHOD}.csv"
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df.to_csv(filename, index=False)
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print(f"Solution saved to '{filename}'")
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L337">src/examples/print-benchmark.ts:337</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printPollution | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printPollution</a></li></ul><h1>Function printPollution</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printpollution"><span class="tsd-kind-call-signature">printPollution</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printpollution" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the POLL benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printPollution</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printPollution</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparisonimport numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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# -------------------------
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# 0. Solver method and tolerance
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# -------------------------
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METHOD = "Radau" # stiff solver
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RTOL = 1e-6
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ATOL = 1e-6
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# -------------------------
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# 1. Reaction constants
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# -------------------------
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k1 = 0.35
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k2 = 26.6
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k3 = 1.23e4
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k4 = 8.6e-4
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k5 = 8.2e-4
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k6 = 1.5e4
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k7 = 1.3e-4
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k8 = 2.4e4
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k9 = 1.65e4
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k10 = 9e3
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k11 = 0.022
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k12 = 1.2e4
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k13 = 1.88
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k14 = 1.63e4
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k15 = 4.8e6
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k16 = 3.5e-4
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k17 = 0.0175
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k18 = 1e8
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k19 = 4.44e11
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k20 = 1240
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k21 = 2.1
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k22 = 5.78
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k23 = 0.0474
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k24 = 1780
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k25 = 3.12
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# -------------------------
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# 2. Initial conditions
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# -------------------------
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y0 = [
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0, # y1 NO2
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0.2, # y2 NO
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0, # y3 O3P
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0.04, # y4 O3
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0, # y5 HO2
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0, # y6 OH
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0.1, # y7 HCHO
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0.3, # y8 CO
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0.01, # y9 ALD
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0, # y10 MEO2
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0, # y11 C2O3
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60
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0, # y12 CO2
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0, # y13 PAN
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0, # y14 CH3O
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0, # y15 HNO3
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0, # y16 O1D
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65
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0.007, # y17 SO2
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66
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0, # y18 SO4
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67
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0, # y19 NO3
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68
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0 # y20 N2O5
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69
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]
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70
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# -------------------------
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# 3. Define POLL ODE system
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# -------------------------
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def poll(t, y):
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y = np.array(y)
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r1 = k1*y[0]
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r2 = k2*y[1]*y[3]
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r3 = k3*y[4]*y[1]
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r4 = k4*y[6]
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r5 = k5*y[6]
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r6 = k6*y[6]*y[5]
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82
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r7 = k7*y[8]
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83
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r8 = k8*y[8]*y[5]
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r9 = k9*y[10]*y[1]
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85
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r10 = k10*y[10]*y[0]
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86
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r11 = k11*y[12]
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87
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r12 = k12*y[9]*y[1]
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88
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r13 = k13*y[13]
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r14 = k14*y[0]*y[5]
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r15 = k15*y[2]
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r16 = k16*y[3]
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r17 = k17*y[3]
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r18 = k18*y[15]
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r19 = k19*y[15]
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r20 = k20*y[16]*y[5]
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r21 = k21*y[18]
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r22 = k22*y[18]
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r23 = k23*y[0]*y[3]
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r24 = k24*y[18]*y[0]
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r25 = k25*y[19]
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101
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+
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102
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dy = np.zeros(20)
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103
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dy[0] = -(r1 + r10 + r14 + r23 + r24) + (r2 + r3 + r9 + r11 + r12 + r22 + r25)
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104
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dy[1] = -r2 - r3 - r9 - r12 + r1 + r21
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105
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dy[2] = -r15 + r1 + r17 + r19 + r22
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dy[3] = -r2 - r16 - r17 - r23 + r15
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107
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dy[4] = -r3 + 2*r4 + r6 + r7 + r13 + r20
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108
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dy[5] = -r6 - r8 - r14 - r20 + r3 + 2*r18
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109
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dy[6] = -r4 - r5 - r6 + r13
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110
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dy[7] = r4 + r5 + r6 + r7
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111
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dy[8] = -r7 - r8
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112
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dy[9] = -r12 + r7 + r9
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113
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dy[10] = -r9 - r10 + r8 + r11
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114
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dy[11] = r9
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115
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dy[12] = -r11 + r10
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116
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dy[13] = -r13 + r12
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dy[14] = r14
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dy[15] = -r18 - r19 + r16
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119
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dy[16] = -r20
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120
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dy[17] = r20
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121
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dy[18] = -r21 - r22 - r24 + r23 + r25
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dy[19] = -r25 + r24
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+
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return dy
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# -------------------------
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127
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# 4. Time array
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# -------------------------
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129
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t_start = 0
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t_end = 60 # final time
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t_step = 0.002
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n_points = int(np.ceil((t_end - t_start)/t_step)) + 1
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133
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t_eval = np.linspace(t_start, t_end, n_points)
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# -------------------------
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136
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# 5. Solve ODE
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137
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# -------------------------
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138
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sol = solve_ivp(
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poll,
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(t_start, t_end),
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=RTOL,
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145
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atol=ATOL
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# -------------------------
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152
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# 6. Save solution to CSV
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153
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# -------------------------
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154
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col_names = ['t'] + [f'y{i+1}' for i in range(20)]
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data = np.column_stack((sol.t, sol.y.T))
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df = pd.DataFrame(data, columns=col_names)
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filename = f"POLL-using-{METHOD}.csv"
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158
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df.to_csv(filename, index=False)
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159
|
+
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160
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print(f"Solution saved to '{filename}'")
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L592">src/examples/print-benchmark.ts:592</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printRobertson | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printRobertson</a></li></ul><h1>Function printRobertson</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printrobertson"><span class="tsd-kind-call-signature">printRobertson</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printrobertson" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the ROBER benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printRobertson</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printRobertson</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparison
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import numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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10
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METHOD = "Radau" # "BDF" or "LSODA"
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# -------------------------
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# 1. Define Robertson ODE
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14
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# -------------------------
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15
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def robertson(t, y):
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A, B, C = y
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dA = -0.04 * A + 1e4 * B * C
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dB = 0.04 * A - 1e4 * B * C - 3e7 * B**2
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dC = 3e7 * B**2
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return [dA, dB, dC]
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# -------------------------
|
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# 2. Initial conditions
|
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# -------------------------
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25
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y0 = [1.0, 0.0, 0.0]
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t_start = 0.0
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t_end = 1e11
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t_step = 2.5e6
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t_span = (t_start, t_end)
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# Output points
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t_eval = np.arange(t_start, t_end + t_step, t_step)
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|
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34
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# -------------------------
|
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35
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# 3. Solve ODE
|
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36
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# -------------------------
|
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37
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sol = solve_ivp(
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robertson,
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39
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t_span,
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40
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=1e-7,
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atol=1e-7
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# sol.t → time array, sol.y.T → concentrations (n_points, 3)
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data = np.column_stack((sol.t, sol.y.T))
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# Create DataFrame with headers
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df = pd.DataFrame(data, columns=['time', 'A', 'B', 'C'])
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# Save to CSV
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df.to_csv(f'ROBER-using-{METHOD}.csv', index=False)
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L102">src/examples/print-benchmark.ts:102</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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<!DOCTYPE html><html class="default" lang="en" data-base="../"><head><meta charset="utf-8"/><meta http-equiv="x-ua-compatible" content="IE=edge"/><title>printVdpol | diff-grok - v1.0.10</title><meta name="description" content="Documentation for diff-grok"/><meta name="viewport" content="width=device-width, initial-scale=1"/><link rel="stylesheet" href="../assets/style.css"/><link rel="stylesheet" href="../assets/highlight.css"/><script defer src="../assets/main.js"></script><script async src="../assets/icons.js" id="tsd-icons-script"></script><script async src="../assets/search.js" id="tsd-search-script"></script><script async src="../assets/navigation.js" id="tsd-nav-script"></script><script async src="../assets/hierarchy.js" id="tsd-hierarchy-script"></script></head><body><script>document.documentElement.dataset.theme = localStorage.getItem("tsd-theme") || "os";document.body.style.display="none";setTimeout(() => window.app?app.showPage():document.body.style.removeProperty("display"),500)</script><header class="tsd-page-toolbar"><div class="tsd-toolbar-contents container"><a href="../index.html" class="title">diff-grok - v1.0.10</a><div id="tsd-toolbar-links"></div><button id="tsd-search-trigger" class="tsd-widget" aria-label="Search"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-search"></use></svg></button><dialog id="tsd-search" aria-label="Search"><input role="combobox" id="tsd-search-input" aria-controls="tsd-search-results" aria-autocomplete="list" aria-expanded="true" autocapitalize="off" autocomplete="off" placeholder="Search the docs" maxLength="100"/><ul role="listbox" id="tsd-search-results"></ul><div id="tsd-search-status" aria-live="polite" aria-atomic="true"><div>Preparing search index...</div></div></dialog><a href="#" class="tsd-widget menu" id="tsd-toolbar-menu-trigger" data-toggle="menu" aria-label="Menu"><svg width="16" height="16" viewBox="0 0 16 16" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-menu"></use></svg></a></div></header><div class="container container-main"><div class="col-content"><div class="tsd-page-title"><ul class="tsd-breadcrumb" aria-label="Breadcrumb"><li><a href="" aria-current="page">printVdpol</a></li></ul><h1>Function printVdpol</h1></div><section class="tsd-panel"><ul class="tsd-signatures"><li class=""><div class="tsd-signature tsd-anchor-link" id="printvdpol"><span class="tsd-kind-call-signature">printVdpol</span><span class="tsd-signature-symbol">()</span><span class="tsd-signature-symbol">:</span> <span class="tsd-signature-type">void</span><a href="#printvdpol" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></div><div class="tsd-description"><div class="tsd-comment tsd-typography"><p>Print solution of the VDPOL benchmark problem</p>
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</div><h4 class="tsd-returns-title">Returns <span class="tsd-signature-type">void</span></h4><div class="tsd-comment tsd-typography"><div class="tsd-tag-example"><h4 class="tsd-anchor-link" id="example">Example<a href="#example" aria-label="Permalink" class="tsd-anchor-icon"><svg viewBox="0 0 24 24" aria-hidden="true"><use href="../assets/icons.svg#icon-anchor"></use></svg></a></h4><pre><code class="ts"><span class="hl-3">// TypeScript usage example</span><br/><span class="hl-4">import</span><span class="hl-1"> {</span><span class="hl-5">printVdpol</span><span class="hl-1">} </span><span class="hl-4">from</span><span class="hl-1"> </span><span class="hl-2">'diff-grok'</span><span class="hl-1">;</span><br/><br/><span class="hl-0">printVdpol</span><span class="hl-1">();</span>
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</code><button type="button">Copy</button></pre>
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<pre><code class="python"># Python reference calculation for comparison
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import numpy as np
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import pandas as pd
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from scipy.integrate import solve_ivp
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# -------------------------
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# 0. Solver method
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# -------------------------
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METHOD = "Radau" # stiff solver recommended for van der Pol with large mu
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# -------------------------
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# 1. Define van der Pol ODE (stiff)
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# -------------------------
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def vdpol(t, y):
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x1, x2 = y
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dx1 = x2
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dx2 = -x1 + 1000 * (1 - x1**2) * x2 # mu = 1000
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return [dx1, dx2]
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# -------------------------
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# 2. Initial conditions and time
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# -------------------------
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y0 = [-1, 1]
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t_start = 0.0
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t_end = 2000.0
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t_step = 0.1
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# Use linspace to avoid "t_eval not in t_span" error
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n_points = int(np.ceil((t_end - t_start) / t_step)) + 1
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t_eval = np.linspace(t_start, t_end, n_points)
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# -------------------------
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# 3. Solve ODE
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# -------------------------
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sol = solve_ivp(
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vdpol,
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(t_start, t_end),
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y0,
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method=METHOD,
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t_eval=t_eval,
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rtol=1e-12,
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atol=1e-12
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)
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print("Success:", sol.success)
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print("Message:", sol.message)
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# -------------------------
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# 4. Save solution to CSV
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# -------------------------
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data = np.column_stack((sol.t, sol.y.T))
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col_names = ['t', 'x1', 'x2']
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df = pd.DataFrame(data, columns=col_names)
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filename = f"VANDERPOL-using-{METHOD}.csv"
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df.to_csv(filename, index=False)
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print(f"Solution saved to '{filename}'")
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</code><button type="button">Copy</button></pre>
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</div></div><aside class="tsd-sources"><ul><li>Defined in <a href="https://github.com/datagrok-ai/DiffGrok/blob/3c67f17fb9b88f69647e701ac86a3b861345124e/src/examples/print-benchmark.ts#L262">src/examples/print-benchmark.ts:262</a></li></ul></aside></div></li></ul></section></div><div class="col-sidebar"><div class="page-menu"><div class="tsd-navigation settings"><details class="tsd-accordion"><summary class="tsd-accordion-summary"><svg width="20" height="20" viewBox="0 0 24 24" fill="none" aria-hidden="true"><use href="../assets/icons.svg#icon-chevronDown"></use></svg><h3>Settings</h3></summary><div class="tsd-accordion-details"><div class="tsd-filter-visibility"><span class="settings-label">Member Visibility</span><ul id="tsd-filter-options"><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-inherited" name="inherited" checked/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>Inherited</span></label></li><li class="tsd-filter-item"><label class="tsd-filter-input"><input type="checkbox" id="tsd-filter-external" name="external"/><svg width="32" height="32" viewBox="0 0 32 32" aria-hidden="true"><rect class="tsd-checkbox-background" width="30" height="30" x="1" y="1" rx="6" fill="none"></rect><path class="tsd-checkbox-checkmark" d="M8.35422 16.8214L13.2143 21.75L24.6458 10.25" stroke="none" stroke-width="3.5" stroke-linejoin="round" fill="none"></path></svg><span>External</span></label></li></ul></div><div class="tsd-theme-toggle"><label class="settings-label" for="tsd-theme">Theme</label><select id="tsd-theme"><option value="os">OS</option><option value="light">Light</option><option value="dark">Dark</option></select></div></div></details></div></div><div class="site-menu"><nav class="tsd-navigation"><a href="../modules.html">diff-grok - v1.0.10</a><ul class="tsd-small-nested-navigation" id="tsd-nav-container"><li>Loading...</li></ul></nav></div></div></div><footer><p class="tsd-generator">Generated using <a href="https://typedoc.org/" target="_blank">TypeDoc</a></p></footer><div class="overlay"></div></body></html>
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