diff-grok 1.0.8

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Files changed (136) hide show
  1. package/.eslintrc.json +45 -0
  2. package/.github/scripts/bump-js-api-version.sh +106 -0
  3. package/.github/scripts/check-output.sh +20 -0
  4. package/.github/scripts/iac-cfn-deploy.sh +90 -0
  5. package/.github/scripts/slack_api_request.sh +65 -0
  6. package/.github/scripts/test_package.sh +270 -0
  7. package/.github/workflows/libraries.yaml +305 -0
  8. package/LICENSE +21 -0
  9. package/README.MD +396 -0
  10. package/eslintrc.json +45 -0
  11. package/images/acid-prod.gif +0 -0
  12. package/index.js +6 -0
  13. package/index.js.map +1 -0
  14. package/index.ts +15 -0
  15. package/package.json +45 -0
  16. package/src/examples/basic-use.js +40 -0
  17. package/src/examples/basic-use.js.map +1 -0
  18. package/src/examples/basic-use.ts +44 -0
  19. package/src/examples/check-methods.js +45 -0
  20. package/src/examples/check-methods.js.map +1 -0
  21. package/src/examples/check-methods.ts +62 -0
  22. package/src/examples/corr-probs.js +130 -0
  23. package/src/examples/corr-probs.js.map +1 -0
  24. package/src/examples/corr-probs.ts +151 -0
  25. package/src/examples/cyclic-model.js +100 -0
  26. package/src/examples/cyclic-model.js.map +1 -0
  27. package/src/examples/cyclic-model.ts +110 -0
  28. package/src/examples/e5.js +30 -0
  29. package/src/examples/e5.js.map +1 -0
  30. package/src/examples/e5.ts +29 -0
  31. package/src/examples/hires.js +29 -0
  32. package/src/examples/hires.js.map +1 -0
  33. package/src/examples/hires.ts +29 -0
  34. package/src/examples/index.js +17 -0
  35. package/src/examples/index.js.map +1 -0
  36. package/src/examples/index.ts +18 -0
  37. package/src/examples/model-updates.js +112 -0
  38. package/src/examples/model-updates.js.map +1 -0
  39. package/src/examples/model-updates.ts +122 -0
  40. package/src/examples/orego.js +19 -0
  41. package/src/examples/orego.js.map +1 -0
  42. package/src/examples/orego.ts +19 -0
  43. package/src/examples/pipeline-use.js +87 -0
  44. package/src/examples/pipeline-use.js.map +1 -0
  45. package/src/examples/pipeline-use.ts +98 -0
  46. package/src/examples/pollution.js +110 -0
  47. package/src/examples/pollution.js.map +1 -0
  48. package/src/examples/pollution.ts +110 -0
  49. package/src/examples/robertson.js +14 -0
  50. package/src/examples/robertson.js.map +1 -0
  51. package/src/examples/robertson.ts +13 -0
  52. package/src/examples/scripting.js +31 -0
  53. package/src/examples/scripting.js.map +1 -0
  54. package/src/examples/scripting.ts +36 -0
  55. package/src/examples/vdpol.js +13 -0
  56. package/src/examples/vdpol.js.map +1 -0
  57. package/src/examples/vdpol.ts +12 -0
  58. package/src/pipeline/basic-pipeline-creator.js +21 -0
  59. package/src/pipeline/basic-pipeline-creator.js.map +1 -0
  60. package/src/pipeline/basic-pipeline-creator.ts +24 -0
  61. package/src/pipeline/constants.js +21 -0
  62. package/src/pipeline/constants.js.map +1 -0
  63. package/src/pipeline/constants.ts +21 -0
  64. package/src/pipeline/index.js +8 -0
  65. package/src/pipeline/index.js.map +1 -0
  66. package/src/pipeline/index.ts +7 -0
  67. package/src/pipeline/input.js +45 -0
  68. package/src/pipeline/input.js.map +1 -0
  69. package/src/pipeline/input.ts +55 -0
  70. package/src/pipeline/loops-pipeline-creator.js +107 -0
  71. package/src/pipeline/loops-pipeline-creator.js.map +1 -0
  72. package/src/pipeline/loops-pipeline-creator.ts +138 -0
  73. package/src/pipeline/output.js +146 -0
  74. package/src/pipeline/output.js.map +1 -0
  75. package/src/pipeline/output.ts +196 -0
  76. package/src/pipeline/pipeline-creator.js +10 -0
  77. package/src/pipeline/pipeline-creator.js.map +1 -0
  78. package/src/pipeline/pipeline-creator.ts +16 -0
  79. package/src/pipeline/pipeline.js +71 -0
  80. package/src/pipeline/pipeline.js.map +1 -0
  81. package/src/pipeline/pipeline.ts +104 -0
  82. package/src/pipeline/updates-pipeline-creator.js +98 -0
  83. package/src/pipeline/updates-pipeline-creator.js.map +1 -0
  84. package/src/pipeline/updates-pipeline-creator.ts +125 -0
  85. package/src/scripting-tools/constants.js +53 -0
  86. package/src/scripting-tools/constants.js.map +1 -0
  87. package/src/scripting-tools/constants.ts +51 -0
  88. package/src/scripting-tools/index.js +4 -0
  89. package/src/scripting-tools/index.js.map +1 -0
  90. package/src/scripting-tools/index.ts +7 -0
  91. package/src/scripting-tools/model-error.js +17 -0
  92. package/src/scripting-tools/model-error.js.map +1 -0
  93. package/src/scripting-tools/model-error.ts +19 -0
  94. package/src/scripting-tools/scripting-tools.js +1032 -0
  95. package/src/scripting-tools/scripting-tools.js.map +1 -0
  96. package/src/scripting-tools/scripting-tools.ts +1375 -0
  97. package/src/solver-tools/callbacks/callback-base.js +10 -0
  98. package/src/solver-tools/callbacks/callback-base.js.map +1 -0
  99. package/src/solver-tools/callbacks/callback-base.ts +8 -0
  100. package/src/solver-tools/callbacks/callback-tools.js +14 -0
  101. package/src/solver-tools/callbacks/callback-tools.js.map +1 -0
  102. package/src/solver-tools/callbacks/callback-tools.ts +20 -0
  103. package/src/solver-tools/callbacks/iter-checker-callback.js +16 -0
  104. package/src/solver-tools/callbacks/iter-checker-callback.js.map +1 -0
  105. package/src/solver-tools/callbacks/iter-checker-callback.ts +21 -0
  106. package/src/solver-tools/callbacks/time-checker-callback.js +17 -0
  107. package/src/solver-tools/callbacks/time-checker-callback.js.map +1 -0
  108. package/src/solver-tools/callbacks/time-checker-callback.ts +19 -0
  109. package/src/solver-tools/index.js +6 -0
  110. package/src/solver-tools/index.js.map +1 -0
  111. package/src/solver-tools/index.ts +6 -0
  112. package/src/solver-tools/lin-alg-tools.js +56 -0
  113. package/src/solver-tools/lin-alg-tools.js.map +1 -0
  114. package/src/solver-tools/lin-alg-tools.ts +75 -0
  115. package/src/solver-tools/mrt-method.js +210 -0
  116. package/src/solver-tools/mrt-method.js.map +1 -0
  117. package/src/solver-tools/mrt-method.ts +269 -0
  118. package/src/solver-tools/ros34prw-method.js +257 -0
  119. package/src/solver-tools/ros34prw-method.js.map +1 -0
  120. package/src/solver-tools/ros34prw-method.ts +335 -0
  121. package/src/solver-tools/ros3prw-method.js +233 -0
  122. package/src/solver-tools/ros3prw-method.js.map +1 -0
  123. package/src/solver-tools/ros3prw-method.ts +304 -0
  124. package/src/solver-tools/solver-defs.js +58 -0
  125. package/src/solver-tools/solver-defs.js.map +1 -0
  126. package/src/solver-tools/solver-defs.ts +100 -0
  127. package/src/worker-tools/index.js +3 -0
  128. package/src/worker-tools/index.js.map +1 -0
  129. package/src/worker-tools/index.ts +2 -0
  130. package/src/worker-tools/scripting.js +68 -0
  131. package/src/worker-tools/scripting.js.map +1 -0
  132. package/src/worker-tools/scripting.ts +95 -0
  133. package/src/worker-tools/solving.js +48 -0
  134. package/src/worker-tools/solving.js.map +1 -0
  135. package/src/worker-tools/solving.ts +60 -0
  136. package/tsconfig.json +71 -0
@@ -0,0 +1,29 @@
1
+ /** High Irradiance Responses of photomorphogenesis (see https://archimede.uniba.it/~testset/problems/hires.php) */
2
+ export const hires = {
3
+ name: 'HIRES',
4
+ arg: {name: 't', start: 0, finish: 321.8122, step: 0.01},
5
+ initial: [1, 0, 0, 0, 0, 0, 0, 0.0057],
6
+ func: (t: number, y: Float64Array, output: Float64Array) => {
7
+ // extract function values
8
+ const y1 = y[0];
9
+ const y2 = y[1];
10
+ const y3 = y[2];
11
+ const y4 = y[3];
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+ const y5 = y[4];
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+ const y6 = y[5];
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+ const y7 = y[6];
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+ const y8 = y[7];
16
+
17
+ // compute output
18
+ output[0] = -1.71 * y1 + 0.43 * y2 + 8.32 * y3 + 0.0007;
19
+ output[1] = 1.71 * y1 - 8.75 * y2;
20
+ output[2] = -10.03 * y3 + 0.43 * y4 + 0.035 * y5;
21
+ output[3] = 8.32 * y2 + 1.71 * y3 - 1.12 * y4;
22
+ output[4] = -1.745 * y5 + 0.43 * y6 + 0.43 * y7;
23
+ output[5] = -280 * y6 * y8 + 0.69 * y4 + 1.71 * y5 - 0.43 * y6 + 0.69 * y7;
24
+ output[6] = 280 * y6 * y8 - 1.81 * y7;
25
+ output[7] = -280 * y6 * y8 + 1.81 * y7;
26
+ },
27
+ tolerance: 1e-10,
28
+ solutionColNames: ['y1', 'y2', 'y3', 'y4', 'y5', 'y6', 'y7', 'y8'],
29
+ }; // hires
@@ -0,0 +1,17 @@
1
+ import { robertson } from './robertson';
2
+ import { hires } from './hires';
3
+ import { vdpol } from './vdpol';
4
+ import { orego } from './orego';
5
+ import { e5 } from './e5';
6
+ import { pollution } from './pollution';
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+ /** Problems for performance check */
8
+ export const perfProbs = [
9
+ robertson,
10
+ hires,
11
+ vdpol,
12
+ orego,
13
+ e5,
14
+ pollution,
15
+ ];
16
+ export { corrProbs } from './corr-probs';
17
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
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@@ -0,0 +1,18 @@
1
+ import {robertson} from './robertson';
2
+ import {hires} from './hires';
3
+ import {vdpol} from './vdpol';
4
+ import {orego} from './orego';
5
+ import {e5} from './e5';
6
+ import {pollution} from './pollution';
7
+
8
+ /** Problems for performance check */
9
+ export const perfProbs = [
10
+ robertson,
11
+ hires,
12
+ vdpol,
13
+ orego,
14
+ e5,
15
+ pollution,
16
+ ];
17
+
18
+ export {corrProbs, CorrProblem} from './corr-probs';
@@ -0,0 +1,112 @@
1
+ /* eslint-disable max-len */
2
+ /** This example shows how to apply pipelines and models with updates.
3
+ This approach can be used for in-webworkers analysis of models.
4
+
5
+ Here, we consider gluconic acid (GA) production by Aspergillus niger modeling.
6
+ */
7
+ import * as DGL from '../../index';
8
+ /** 1. Model specification */
9
+ const model = `#name: GA-production
10
+ #tags: model
11
+ #description: Gluconic acid (GA) production by Aspergillus niger modeling
12
+ #equations:
13
+ dX/dt = rX
14
+ dS/dt = -gamma * rX - lambda * X
15
+ dO/dt = Kla * (Cod - O) - delta * rX - phi * X
16
+ dP/dt = alpha * rX + beta * X
17
+
18
+ #expressions:
19
+ mu = muM * S / (Ks + S) * O / (Ko + O)
20
+ rX = mu * X
21
+
22
+ #argument: t, 1-st stage
23
+ _t0 = 0 {units: h; caption: initial; category: Misc} [Start of the process]
24
+ _t1 = 60 {units: h; caption: 1-st stage; category: Durations; min: 20; max: 80} [Duration of the 1-st stage]
25
+ step = 0.1 {units: h; caption: step; category: Misc; min: 0.01; max: 1} [Time step of simulation]
26
+
27
+ #update: 2-nd stage
28
+ duration = overall - _t1
29
+ S += 70
30
+
31
+ #inits:
32
+ X = 5 {units: kg/m³; caption: biomass; category: Initial concentrations; min: 1; max: 10} [Aspergillus niger biomass]
33
+ S = 150 {units: kg/m³; caption: glucose; category: Initial concentrations; min: 50; max: 200} [Glucose]
34
+ O = 7 {units: kg/m³; caption: oxygen; category: Initial concentrations; min: 1; max: 10} [Dissolved oxygen]
35
+ P = 0 {units: kg/m³; caption: acid; category: Initial concentrations; min: 0; max: 0.1} [Gluconic acid]
36
+
37
+ #output:
38
+ t {caption: time}
39
+ X {caption: biomass}
40
+ S {caption: glucose}
41
+ O {caption: oxygen}
42
+ P {caption: acid}
43
+
44
+ #parameters:
45
+ overall = 100 {units: h; category: Durations; min: 100; max: 140} [Overall duration]
46
+ muM = 0.668 {units: 1/h; category: Parameters} [Monod type model parameter]
47
+ alpha = 2.92 {category: Parameters} [Monod type model parameter]
48
+ beta = 0.131 {units: 1/h; category: Parameters} [Monod type model parameter]
49
+ gamma = 2.12 {category: Parameters} [Monod type model parameter]
50
+ lambda = 0.232 {units: 1/h; category: Parameters} [Monod type model parameter]
51
+ delta = 0.278 {category: Parameters} [Monod type model parameter]
52
+ phi = 4.87e-3 {units: 1/h; category: Parameters} [Monod type model parameter]
53
+ Ks = 1.309e2 {units: g/L; category: Parameters} [Monod type model parameter]
54
+ Ko = 3.63e-4 {units: g/L; category: Parameters} [Monod type model parameter]
55
+ Kla = 1.7e-2 {units: 1/s; category: Parameters} [Volumetric mass transfer coefficient]
56
+ Cod = 15 {units: kg/m³; category: Parameters} [Liquid phase dissolved oxygen saturation concentration]
57
+
58
+ #tolerance: 1e-9`;
59
+ /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
60
+ const ivp = DGL.getIVP(model);
61
+ const ivpWW = DGL.getIvp2WebWorker(ivp);
62
+ /** 3. Perform computations */
63
+ try {
64
+ // 3.1) Extract names of outputs
65
+ const outputNames = DGL.getOutputNames(ivp);
66
+ const outSize = outputNames.length;
67
+ // 3.2) Set model inputs
68
+ const inputs = {
69
+ _t0: 0,
70
+ _t1: 60,
71
+ _h: 1,
72
+ X: 5,
73
+ S: 150,
74
+ O: 7,
75
+ P: 0,
76
+ overall: 100,
77
+ muM: 0.668,
78
+ alpha: 2.92,
79
+ beta: 0.131,
80
+ gamma: 2.12,
81
+ lambda: 0.232,
82
+ delta: 0.278,
83
+ phi: 4.87e-3,
84
+ Ks: 1.309e2,
85
+ Ko: 3.63e-4,
86
+ Kla: 1.7e-2,
87
+ Cod: 15,
88
+ };
89
+ const inputVector = DGL.getInputVector(inputs, ivp);
90
+ // 3.3) Create a pipeline
91
+ const creator = DGL.getPipelineCreator(ivp);
92
+ const pipeline = creator.getPipeline(inputVector);
93
+ // 3.4) Apply pipeline to perform computations
94
+ const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
95
+ // 3.5) Print results
96
+ // 3.5.1) Table header
97
+ let line = ' ';
98
+ outputNames.forEach((name) => line += name + ' ');
99
+ console.log(line);
100
+ // 3.5.2) Table with solution
101
+ const length = solution[0].length;
102
+ for (let i = 0; i < length; ++i) {
103
+ line = '';
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+ for (let j = 0; j < outSize; ++j)
105
+ line += solution[j][i].toFixed(8) + ' ';
106
+ console.log(line);
107
+ }
108
+ }
109
+ catch (err) {
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+ console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
111
+ }
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+ //# sourceMappingURL=model-updates.js.map
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@@ -0,0 +1,122 @@
1
+ /* eslint-disable max-len */
2
+ /** This example shows how to apply pipelines and models with updates.
3
+ This approach can be used for in-webworkers analysis of models.
4
+
5
+ Here, we consider gluconic acid (GA) production by Aspergillus niger modeling.
6
+ */
7
+
8
+ import * as DGL from '../../index';
9
+
10
+ /** 1. Model specification */
11
+ const model = `#name: GA-production
12
+ #tags: model
13
+ #description: Gluconic acid (GA) production by Aspergillus niger modeling
14
+ #equations:
15
+ dX/dt = rX
16
+ dS/dt = -gamma * rX - lambda * X
17
+ dO/dt = Kla * (Cod - O) - delta * rX - phi * X
18
+ dP/dt = alpha * rX + beta * X
19
+
20
+ #expressions:
21
+ mu = muM * S / (Ks + S) * O / (Ko + O)
22
+ rX = mu * X
23
+
24
+ #argument: t, 1-st stage
25
+ _t0 = 0 {units: h; caption: initial; category: Misc} [Start of the process]
26
+ _t1 = 60 {units: h; caption: 1-st stage; category: Durations; min: 20; max: 80} [Duration of the 1-st stage]
27
+ step = 0.1 {units: h; caption: step; category: Misc; min: 0.01; max: 1} [Time step of simulation]
28
+
29
+ #update: 2-nd stage
30
+ duration = overall - _t1
31
+ S += 70
32
+
33
+ #inits:
34
+ X = 5 {units: kg/m³; caption: biomass; category: Initial concentrations; min: 1; max: 10} [Aspergillus niger biomass]
35
+ S = 150 {units: kg/m³; caption: glucose; category: Initial concentrations; min: 50; max: 200} [Glucose]
36
+ O = 7 {units: kg/m³; caption: oxygen; category: Initial concentrations; min: 1; max: 10} [Dissolved oxygen]
37
+ P = 0 {units: kg/m³; caption: acid; category: Initial concentrations; min: 0; max: 0.1} [Gluconic acid]
38
+
39
+ #output:
40
+ t {caption: time}
41
+ X {caption: biomass}
42
+ S {caption: glucose}
43
+ O {caption: oxygen}
44
+ P {caption: acid}
45
+
46
+ #parameters:
47
+ overall = 100 {units: h; category: Durations; min: 100; max: 140} [Overall duration]
48
+ muM = 0.668 {units: 1/h; category: Parameters} [Monod type model parameter]
49
+ alpha = 2.92 {category: Parameters} [Monod type model parameter]
50
+ beta = 0.131 {units: 1/h; category: Parameters} [Monod type model parameter]
51
+ gamma = 2.12 {category: Parameters} [Monod type model parameter]
52
+ lambda = 0.232 {units: 1/h; category: Parameters} [Monod type model parameter]
53
+ delta = 0.278 {category: Parameters} [Monod type model parameter]
54
+ phi = 4.87e-3 {units: 1/h; category: Parameters} [Monod type model parameter]
55
+ Ks = 1.309e2 {units: g/L; category: Parameters} [Monod type model parameter]
56
+ Ko = 3.63e-4 {units: g/L; category: Parameters} [Monod type model parameter]
57
+ Kla = 1.7e-2 {units: 1/s; category: Parameters} [Volumetric mass transfer coefficient]
58
+ Cod = 15 {units: kg/m³; category: Parameters} [Liquid phase dissolved oxygen saturation concentration]
59
+
60
+ #tolerance: 1e-9`;
61
+
62
+ /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
63
+ const ivp = DGL.getIVP(model);
64
+ const ivpWW = DGL.getIvp2WebWorker(ivp);
65
+
66
+ /** 3. Perform computations */
67
+ try {
68
+ // 3.1) Extract names of outputs
69
+ const outputNames = DGL.getOutputNames(ivp);
70
+ const outSize = outputNames.length;
71
+
72
+ // 3.2) Set model inputs
73
+ const inputs = {
74
+ _t0: 0,
75
+ _t1: 60,
76
+ _h: 1,
77
+ X: 5,
78
+ S: 150,
79
+ O: 7,
80
+ P: 0,
81
+ overall: 100,
82
+ muM: 0.668,
83
+ alpha: 2.92,
84
+ beta: 0.131,
85
+ gamma: 2.12,
86
+ lambda: 0.232,
87
+ delta: 0.278,
88
+ phi: 4.87e-3,
89
+ Ks: 1.309e2,
90
+ Ko: 3.63e-4,
91
+ Kla: 1.7e-2,
92
+ Cod: 15,
93
+ };
94
+ const inputVector = DGL.getInputVector(inputs, ivp);
95
+
96
+ // 3.3) Create a pipeline
97
+ const creator = DGL.getPipelineCreator(ivp);
98
+ const pipeline = creator.getPipeline(inputVector);
99
+
100
+ // 3.4) Apply pipeline to perform computations
101
+ const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
102
+
103
+ // 3.5) Print results
104
+
105
+ // 3.5.1) Table header
106
+ let line = ' ';
107
+ outputNames.forEach((name) => line += name + ' ');
108
+ console.log(line);
109
+
110
+ // 3.5.2) Table with solution
111
+ const length = solution[0].length;
112
+ for (let i = 0; i < length; ++i) {
113
+ line = '';
114
+
115
+ for (let j = 0; j < outSize; ++j)
116
+ line += solution[j][i].toFixed(8) + ' ';
117
+
118
+ console.log(line);
119
+ }
120
+ } catch (err) {
121
+ console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
122
+ }
@@ -0,0 +1,19 @@
1
+ /** The OREGO model (see https://archimede.uniba.it/~testset/report/orego.pdf) */
2
+ export const orego = {
3
+ name: 'OREGO',
4
+ arg: { name: 't', start: 0, finish: 360, step: 0.01 },
5
+ initial: [1, 2, 3],
6
+ func: (t, y, output) => {
7
+ // extract function values
8
+ const y1 = y[0];
9
+ const y2 = y[1];
10
+ const y3 = y[2];
11
+ // compute output
12
+ output[0] = 77.27 * (y2 - y1 * y2 + y1 - 0.000008375 * y1 * y1);
13
+ output[1] = 1 / 77.27 * (-y2 - y1 * y2 + y3);
14
+ output[2] = 0.161 * (y1 - y3);
15
+ },
16
+ tolerance: 1e-8,
17
+ solutionColNames: ['y1', 'y2', 'y3'],
18
+ };
19
+ //# sourceMappingURL=orego.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"orego.js","sourceRoot":"","sources":["orego.ts"],"names":[],"mappings":"AAAA,iFAAiF;AACjF,MAAM,CAAC,MAAM,KAAK,GAAG;IACnB,IAAI,EAAE,OAAO;IACb,GAAG,EAAE,EAAC,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAC;IACnD,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;IAClB,IAAI,EAAE,CAAC,CAAS,EAAE,CAAe,EAAE,MAAoB,EAAE,EAAE;QACzD,0BAA0B;QAC1B,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhB,iBAAiB;QACjB,MAAM,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,WAAW,GAAG,EAAE,GAAG,EAAE,CAAE,CAAC;QACjE,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,KAAK,GAAG,CAAC,CAAC,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,CAAC,CAAC;QAC7C,MAAM,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC;IAChC,CAAC;IACD,SAAS,EAAE,IAAI;IACf,gBAAgB,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC;CACrC,CAAC"}
@@ -0,0 +1,19 @@
1
+ /** The OREGO model (see https://archimede.uniba.it/~testset/report/orego.pdf) */
2
+ export const orego = {
3
+ name: 'OREGO',
4
+ arg: {name: 't', start: 0, finish: 360, step: 0.01},
5
+ initial: [1, 2, 3],
6
+ func: (t: number, y: Float64Array, output: Float64Array) => {
7
+ // extract function values
8
+ const y1 = y[0];
9
+ const y2 = y[1];
10
+ const y3 = y[2];
11
+
12
+ // compute output
13
+ output[0] = 77.27 * (y2 - y1 * y2 + y1 - 0.000008375 * y1 * y1 );
14
+ output[1] = 1 / 77.27 * (-y2 - y1 * y2 + y3);
15
+ output[2] = 0.161 * (y1 - y3);
16
+ },
17
+ tolerance: 1e-8,
18
+ solutionColNames: ['y1', 'y2', 'y3'],
19
+ };
@@ -0,0 +1,87 @@
1
+ /* eslint-disable max-len */
2
+ /** This example shows how to apply pipelines and models with customized outputs.
3
+ This approach can be used for in-webworkers analysis of models.
4
+
5
+ Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
6
+ */
7
+ import * as DGL from '../../index';
8
+ /** 1. Model specification: the M|M|2|2 model */
9
+ const model = `#name: M|M|2|2
10
+ #description: Modelling the system with two servers & two waiting places (EXPLAINED)
11
+ #equations:
12
+ dp0/dt = -la * p0 + mu * p1
13
+ dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
14
+ dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
15
+ dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
16
+
17
+ #expressions:
18
+ la = 1 / arrival
19
+ mu = 1 / service
20
+ p4 = 1 - p0 - p1 - p2 - p3
21
+ busy = 1 - p0 - p1
22
+ queue = p3 + 2 * p4
23
+
24
+ #argument: t
25
+ _t0 = 0 {min: 0; max: 10; caption: start; category: Time; units: min} [Initial time of simulation]
26
+ _t1 = 60 {min: 20; max: 100; caption: finish; category: Time; units: min} [Final time of simulation]
27
+ _h = 1 {min: 0.01; max: 0.1; caption: step; category: Time; units: min} [Time step of simulation]
28
+
29
+ #inits:
30
+ p0 = 1 {min: 0; max: 1; category: Initial state; caption: empty} [Probability that initially there are NO customers]
31
+ p1 = 0 {min: 0; max: 1; category: Initial state; caption: single} [Probability that initially there is ONE customer]
32
+ p2 = 0 {min: 0; max: 1; category: Initial state; caption: two} [Probability that initially there are TWO customers]
33
+ p3 = 0 {min: 0; max: 1; category: Initial state; caption: three} [Probability that initially there are THREE customers]
34
+
35
+ #output:
36
+ t {caption: Time, min}
37
+ p0 {caption: P(Empty)}
38
+ busy {caption: P(Full load)}
39
+ queue {caption: E(Queue)}
40
+
41
+ #parameters:
42
+ arrival = 10 {min: 1; max: 100; category: Means; caption: arrival; units: min} [Mean arrival time]
43
+ service = 100 {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
44
+ /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
45
+ const ivp = DGL.getIVP(model);
46
+ const ivpWW = DGL.getIvp2WebWorker(ivp);
47
+ /** 3. Perform computations */
48
+ try {
49
+ // 3.1) Extract names of outputs
50
+ const outputNames = DGL.getOutputNames(ivp);
51
+ const outSize = outputNames.length;
52
+ // 3.2) Set model inputs
53
+ const inputs = {
54
+ _t0: 0, // Initial time of simulation
55
+ _t1: 60, // Final time of simulation
56
+ _h: 1, // Time step of simulation
57
+ p0: 1, // Probability that initially there are NO customers
58
+ p1: 0, // Probability that initially there is ONE customer
59
+ p2: 0, // Probability that initially there are TWO customers
60
+ p3: 0, // Probability that initially there are THREE customers
61
+ arrival: 10, // Mean arrival time
62
+ service: 100, // Mean service time
63
+ };
64
+ const inputVector = DGL.getInputVector(inputs, ivp);
65
+ // 3.3) Create a pipeline
66
+ const creator = DGL.getPipelineCreator(ivp);
67
+ const pipeline = creator.getPipeline(inputVector);
68
+ // 3.4) Apply pipeline to perform computations
69
+ const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
70
+ // 3.5) Print results
71
+ // 3.5.1) Table header
72
+ let line = '';
73
+ outputNames.forEach((name) => line += name + ' ');
74
+ console.log(line);
75
+ // 3.5.2) Table with solution
76
+ const length = solution[0].length;
77
+ for (let i = 0; i < length; ++i) {
78
+ line = '';
79
+ for (let j = 0; j < outSize; ++j)
80
+ line += solution[j][i].toFixed(8) + ' ';
81
+ console.log(line);
82
+ }
83
+ }
84
+ catch (err) {
85
+ console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
86
+ }
87
+ //# sourceMappingURL=pipeline-use.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"pipeline-use.js","sourceRoot":"","sources":["pipeline-use.ts"],"names":[],"mappings":"AAAA,4BAA4B;AAC5B;;;;EAIE;AAEF,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAEnC,iDAAiD;AACjD,MAAM,KAAK,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;uGAkCyF,CAAC;AAExG,oFAAoF;AACpF,MAAM,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC9B,MAAM,KAAK,GAAG,GAAG,CAAC,gBAAgB,CAAC,GAAG,CAAC,CAAC;AAExC,8BAA8B;AAC9B,IAAI,CAAC;IACH,gCAAgC;IAChC,MAAM,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;IAC5C,MAAM,OAAO,GAAG,WAAW,CAAC,MAAM,CAAC;IAEnC,wBAAwB;IACxB,MAAM,MAAM,GAAG;QACb,GAAG,EAAE,CAAC,EAAE,6BAA6B;QACrC,GAAG,EAAE,EAAE,EAAE,2BAA2B;QACpC,EAAE,EAAE,CAAC,EAAE,0BAA0B;QACjC,EAAE,EAAE,CAAC,EAAE,oDAAoD;QAC3D,EAAE,EAAE,CAAC,EAAE,mDAAmD;QAC1D,EAAE,EAAE,CAAC,EAAE,qDAAqD;QAC5D,EAAE,EAAE,CAAC,EAAE,uDAAuD;QAC9D,OAAO,EAAE,EAAE,EAAE,oBAAoB;QACjC,OAAO,EAAE,GAAG,EAAE,oBAAoB;KACnC,CAAC;IACF,MAAM,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC;IAEpD,yBAAyB;IACzB,MAAM,OAAO,GAAG,GAAG,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC;IAC5C,MAAM,QAAQ,GAAG,OAAO,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;IAElD,8CAA8C;IAC9C,MAAM,QAAQ,GAAG,GAAG,CAAC,aAAa,CAAC,QAAQ,EAAE,KAAK,EAAE,WAAW,CAAC,CAAC;IAEjE,qBAAqB;IAErB,sBAAsB;IACtB,IAAI,IAAI,GAAG,EAAE,CAAC;IACd,WAAW,CAAC,OAAO,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,IAAI,IAAI,GAAG,QAAQ,CAAC,CAAC;IACvD,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAElB,6BAA6B;IAC7B,MAAM,MAAM,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE,CAAC;QAChC,IAAI,GAAG,EAAE,CAAC;QAEV,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,EAAE,EAAE,CAAC;YAC9B,IAAI,IAAI,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC;QAE9C,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACpB,CAAC;AACH,CAAC;AAAC,OAAO,GAAG,EAAE,CAAC;IACb,OAAO,CAAC,GAAG,CAAC,qBAAqB,EAAE,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC;AAC9F,CAAC"}
@@ -0,0 +1,98 @@
1
+ /* eslint-disable max-len */
2
+ /** This example shows how to apply pipelines and models with customized outputs.
3
+ This approach can be used for in-webworkers analysis of models.
4
+
5
+ Here, we consider modeling queues: https://en.wikipedia.org/wiki/M/M/c_queue
6
+ */
7
+
8
+ import * as DGL from '../../index';
9
+
10
+ /** 1. Model specification: the M|M|2|2 model */
11
+ const model = `#name: M|M|2|2
12
+ #description: Modelling the system with two servers & two waiting places (EXPLAINED)
13
+ #equations:
14
+ dp0/dt = -la * p0 + mu * p1
15
+ dp1/dt = la * p0 - (la + mu) * p1 + 2 * mu * p2
16
+ dp2/dt = la * p1 - (la + 2 * mu) * p2 + 2 * mu * p3
17
+ dp3/dt = la * p2 - (la + 2 * mu) * p3 + 2 * mu * p4
18
+
19
+ #expressions:
20
+ la = 1 / arrival
21
+ mu = 1 / service
22
+ p4 = 1 - p0 - p1 - p2 - p3
23
+ busy = 1 - p0 - p1
24
+ queue = p3 + 2 * p4
25
+
26
+ #argument: t
27
+ _t0 = 0 {min: 0; max: 10; caption: start; category: Time; units: min} [Initial time of simulation]
28
+ _t1 = 60 {min: 20; max: 100; caption: finish; category: Time; units: min} [Final time of simulation]
29
+ _h = 1 {min: 0.01; max: 0.1; caption: step; category: Time; units: min} [Time step of simulation]
30
+
31
+ #inits:
32
+ p0 = 1 {min: 0; max: 1; category: Initial state; caption: empty} [Probability that initially there are NO customers]
33
+ p1 = 0 {min: 0; max: 1; category: Initial state; caption: single} [Probability that initially there is ONE customer]
34
+ p2 = 0 {min: 0; max: 1; category: Initial state; caption: two} [Probability that initially there are TWO customers]
35
+ p3 = 0 {min: 0; max: 1; category: Initial state; caption: three} [Probability that initially there are THREE customers]
36
+
37
+ #output:
38
+ t {caption: Time, min}
39
+ p0 {caption: P(Empty)}
40
+ busy {caption: P(Full load)}
41
+ queue {caption: E(Queue)}
42
+
43
+ #parameters:
44
+ arrival = 10 {min: 1; max: 100; category: Means; caption: arrival; units: min} [Mean arrival time]
45
+ service = 100 {min: 1; max: 100; category: Means; caption: service; units: min} [Mean service time]`;
46
+
47
+ /** 2. Generate IVP-objects: for the main thread & for computations in webworkers */
48
+ const ivp = DGL.getIVP(model);
49
+ const ivpWW = DGL.getIvp2WebWorker(ivp);
50
+
51
+ /** 3. Perform computations */
52
+ try {
53
+ // 3.1) Extract names of outputs
54
+ const outputNames = DGL.getOutputNames(ivp);
55
+ const outSize = outputNames.length;
56
+
57
+ // 3.2) Set model inputs
58
+ const inputs = {
59
+ _t0: 0, // Initial time of simulation
60
+ _t1: 60, // Final time of simulation
61
+ _h: 1, // Time step of simulation
62
+ p0: 1, // Probability that initially there are NO customers
63
+ p1: 0, // Probability that initially there is ONE customer
64
+ p2: 0, // Probability that initially there are TWO customers
65
+ p3: 0, // Probability that initially there are THREE customers
66
+ arrival: 10, // Mean arrival time
67
+ service: 100, // Mean service time
68
+ };
69
+ const inputVector = DGL.getInputVector(inputs, ivp);
70
+
71
+ // 3.3) Create a pipeline
72
+ const creator = DGL.getPipelineCreator(ivp);
73
+ const pipeline = creator.getPipeline(inputVector);
74
+
75
+ // 3.4) Apply pipeline to perform computations
76
+ const solution = DGL.applyPipeline(pipeline, ivpWW, inputVector);
77
+
78
+ // 3.5) Print results
79
+
80
+ // 3.5.1) Table header
81
+ let line = '';
82
+ outputNames.forEach((name) => line += name + ' ');
83
+ console.log(line);
84
+
85
+ // 3.5.2) Table with solution
86
+ const length = solution[0].length;
87
+ for (let i = 0; i < length; ++i) {
88
+ line = '';
89
+
90
+ for (let j = 0; j < outSize; ++j)
91
+ line += solution[j][i].toFixed(8) + ' ';
92
+
93
+ console.log(line);
94
+ }
95
+ } catch (err) {
96
+ console.log('Simulation failed: ', err instanceof Error ? err.message : 'Unknown problem!');
97
+ }
98
+
@@ -0,0 +1,110 @@
1
+ /** Kintetic constants for the Pollution model */
2
+ var POL;
3
+ (function (POL) {
4
+ POL[POL["K1"] = 0.35] = "K1";
5
+ POL[POL["K2"] = 26.6] = "K2";
6
+ POL[POL["K3"] = 12300] = "K3";
7
+ POL[POL["K4"] = 0.00086] = "K4";
8
+ POL[POL["K5"] = 0.00082] = "K5";
9
+ POL[POL["K6"] = 15000] = "K6";
10
+ POL[POL["K7"] = 0.00013] = "K7";
11
+ POL[POL["K8"] = 24000] = "K8";
12
+ POL[POL["K9"] = 16500] = "K9";
13
+ POL[POL["K10"] = 9000] = "K10";
14
+ POL[POL["K11"] = 0.022] = "K11";
15
+ POL[POL["K12"] = 12000] = "K12";
16
+ POL[POL["K13"] = 1.88] = "K13";
17
+ POL[POL["K14"] = 16300] = "K14";
18
+ POL[POL["K15"] = 4800000] = "K15";
19
+ POL[POL["K16"] = 0.00035] = "K16";
20
+ POL[POL["K17"] = 0.0175] = "K17";
21
+ POL[POL["K18"] = 100000000] = "K18";
22
+ POL[POL["K19"] = 444000000000] = "K19";
23
+ POL[POL["K20"] = 1240] = "K20";
24
+ POL[POL["K21"] = 2.1] = "K21";
25
+ POL[POL["K22"] = 5.78] = "K22";
26
+ POL[POL["K23"] = 0.0474] = "K23";
27
+ POL[POL["K24"] = 1780] = "K24";
28
+ POL[POL["K25"] = 3.12] = "K25";
29
+ })(POL || (POL = {}));
30
+ ; // POL
31
+ /** The chemical reaction part of the air pollution model (https://archimede.uniba.it/~testset/report/pollu.pdf) */
32
+ export const pollution = {
33
+ name: 'Pollution',
34
+ arg: { name: 't', start: 0, finish: 60, step: 0.002 },
35
+ initial: [0, 0.2, 0, 0.04, 0, 0, 0.1, 0.3, 0.01, 0, 0, 0, 0, 0, 0, 0, 0.007, 0, 0, 0],
36
+ func: (t, y, output) => {
37
+ // extract function values
38
+ const y1 = y[0];
39
+ const y2 = y[1];
40
+ const y3 = y[2];
41
+ const y4 = y[3];
42
+ const y5 = y[4];
43
+ const y6 = y[5];
44
+ const y7 = y[6];
45
+ const y8 = y[7];
46
+ const y9 = y[8];
47
+ const y10 = y[9];
48
+ const y11 = y[10];
49
+ const y12 = y[11];
50
+ const y13 = y[12];
51
+ const y14 = y[13];
52
+ const y15 = y[14];
53
+ const y16 = y[15];
54
+ const y17 = y[16];
55
+ const y18 = y[17];
56
+ const y19 = y[18];
57
+ const y20 = y[19];
58
+ // evaluate expressions
59
+ const r1 = POL.K1 * y1;
60
+ const r2 = POL.K2 * y2 * y4;
61
+ const r3 = POL.K3 * y5 * y2;
62
+ const r4 = POL.K4 * y7;
63
+ const r5 = POL.K5 * y7;
64
+ const r6 = POL.K6 * y7 * y6;
65
+ const r7 = POL.K7 * y9;
66
+ const r8 = POL.K8 * y9 * y6;
67
+ const r9 = POL.K9 * y11 * y2;
68
+ const r10 = POL.K10 * y11 * y1;
69
+ const r11 = POL.K11 * y13;
70
+ const r12 = POL.K12 * y10 * y2;
71
+ const r13 = POL.K13 * y14;
72
+ const r14 = POL.K14 * y1 * y6;
73
+ const r15 = POL.K15 * y3;
74
+ const r16 = POL.K16 * y4;
75
+ const r17 = POL.K17 * y4;
76
+ const r18 = POL.K18 * y16;
77
+ const r19 = POL.K19 * y16;
78
+ const r20 = POL.K20 * y17 * y6;
79
+ const r21 = POL.K21 * y19;
80
+ const r22 = POL.K22 * y19;
81
+ const r23 = POL.K23 * y1 * y4;
82
+ const r24 = POL.K24 * y19 * y1;
83
+ const r25 = POL.K25 * y20;
84
+ // compute output
85
+ output[0] = -(r1 + r10 + r14 + r23 + r24) + (r2 + r3 + r9 + r11 + r12 + r22 + r25);
86
+ output[1] = -r2 - r3 - r9 - r12 + r1 + r21;
87
+ output[2] = -r15 + r1 + r17 + r19 + r22;
88
+ output[3] = -r2 - r16 - r17 - r23 + r15;
89
+ output[4] = -r3 + 2 * r4 + r6 + r7 + r13 + r20;
90
+ output[5] = -r6 - r8 - r14 - r20 + r3 + 2 * r18;
91
+ output[6] = -r4 - r5 - r6 + r13;
92
+ output[7] = r4 + r5 + r6 + r7;
93
+ output[8] = -r7 - r8;
94
+ output[9] = -r12 + r7 + r9;
95
+ output[10] = -r9 - r10 + r8 + r11;
96
+ output[11] = r9;
97
+ output[12] = -r11 + r10;
98
+ output[13] = -r13 + r12;
99
+ output[14] = r14;
100
+ output[15] = -r18 - r19 + r16;
101
+ output[16] = -r20;
102
+ output[17] = r20;
103
+ output[18] = -r21 - r22 - r24 + r23 + r25;
104
+ output[19] = -r25 + r24;
105
+ },
106
+ tolerance: 1e-6,
107
+ solutionColNames: ['y1', 'y2', 'y3', 'y4', 'y5', 'y6', 'y7', 'y8', 'y9', 'y10', 'y11',
108
+ 'y12', 'y13', 'y14', 'y15', 'y16', 'y17', 'y18', 'y19', 'y20'],
109
+ }; // pollution
110
+ //# sourceMappingURL=pollution.js.map
@@ -0,0 +1 @@
1
+ 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