devworkspace 0.2.0 → 0.2.1

package/dist/discovery/detect.js.map

@@ -1 +1 @@
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path from 'node:path';\nimport { safeReadText } from '../security/files.js';\nimport { isSensitiveFile } from '../security/files.js';\nimport type { ScanResult } from './scan.js';\nimport { buildContract } from './commands.js';\nimport type { CommandEntry } from '../config/schemas.js';\n\nexport interface Detected {\n  name: string;\n  category: 'framework' | 'test' | 'tool' | 'database' | 'runtime';\n  evidence: string;\n}\n\nexport interface SubProject {\n  path: string;\n  name: string;\n  ecosystem: string;\n  frameworks: string[];\n}\n\nexport interface PackageInfo {\n  rel: string;\n  name?: string;\n  scripts: Record<string, string>;\n  deps: Record<string, string>;\n  workspaces: string[];\n  packageManagerField?: string;\n  hasTypes: boolean;\n  type?: string;\n}\n\nexport interface DiscoveryReport {\n  schemaVersion: 1;\n  project: { name: string };\n  scan: {\n    fileCount: number;\n    dirCount: number;\n    truncated: boolean;\n    skippedSymlinks: number;\n    ignoredEntries: number;\n  };\n  languages: { name: string; files: number }[];\n  topDirs: { name: string; files: number }[];\n  ecosystems: string[];\n  packageManager: string | null;\n  frameworks: Detected[];\n  monorepo: { tool: string | null; packages: SubProject[] };\n  commands: CommandEntry[];\n  testConfigs: string[];\n  ci: string[];\n  docker: string[];\n  deployment: string[];\n  aiInstructions: string[];\n  docs: string[];\n  /** Names of credential-like files that exist. Their content is never read. */\n  sensitiveFilesPresent: string[];\n  entryHints: string[];\n  warnings: string[];\n}\n\nconst EXT_LANG: Record<string, string> = {\n  '.ts': 'TypeScript',\n  '.tsx': 'TypeScript',\n  '.mts': 'TypeScript',\n  '.cts': 'TypeScript',\n  '.js': 'JavaScript',\n  '.jsx': 'JavaScript',\n  '.mjs': 'JavaScript',\n  '.cjs': 'JavaScript',\n  '.py': 'Python',\n  '.go': 'Go',\n  '.rs': 'Rust',\n  '.java': 'Java',\n  '.kt': 'Kotlin',\n  '.php': 'PHP',\n  '.rb': 'Ruby',\n  '.cs': 'C#',\n  '.swift': 'Swift',\n  '.c': 'C',\n  '.h': 'C',\n  '.cpp': 'C++',\n  '.cc': 'C++',\n  '.hpp': 'C++',\n  '.vue': 'Vue',\n  '.svelte': 'Svelte',\n  '.sql': 'SQL',\n};\n\nconst NODE_DEP_MAP: Record<string, { name: string; category: Detected['category'] }> = {\n  express: { name: 'Express', category: 'framework' },\n  fastify: { name: 'Fastify', category: 'framework' },\n  koa: { name: 'Koa', category: 'framework' },\n  hono: { name: 'Hono', category: 'framework' },\n  '@nestjs/core': { name: 'NestJS', category: 'framework' },\n  next: { name: 'Next.js', category: 'framework' },\n  react: { name: 'React', category: 'framework' },\n  vue: { name: 'Vue', category: 'framework' },\n  nuxt: { name: 'Nuxt', category: 'framework' },\n  svelte: { name: 'Svelte', category: 'framework' },\n  '@sveltejs/kit': { name: 'SvelteKit', category: 'framework' },\n  '@angular/core': { name: 'Angular', category: 'framework' },\n  astro: { name: 'Astro', category: 'framework' },\n  electron: { name: 'Electron', category: 'framework' },\n  '@remix-run/react': { name: 'Remix', category: 'framework' },\n  vite: { name: 'Vite', category: 'tool' },\n  typescript: { name: 'TypeScript', category: 'tool' },\n  eslint: { name: 'ESLint', category: 'tool' },\n  prettier: { name: 'Prettier', category: 'tool' },\n  tailwindcss: { name: 'Tailwind CSS', category: 'tool' },\n  webpack: { name: 'webpack', category: 'tool' },\n  '@biomejs/biome': { name: 'Biome', category: 'tool' },\n  jest: { name: 'Jest', category: 'test' },\n  vitest: { name: 'Vitest', category: 'test' },\n  mocha: { name: 'Mocha', category: 'test' },\n  '@playwright/test': { name: 'Playwright', category: 'test' },\n  cypress: { name: 'Cypress', category: 'test' },\n  prisma: { name: 'Prisma', category: 'database' },\n  '@prisma/client': { name: 'Prisma', category: 'database' },\n  typeorm: { name: 'TypeORM', category: 'database' },\n  mongoose: { name: 'Mongoose', category: 'database' },\n  sequelize: { name: 'Sequelize', category: 'database' },\n  'drizzle-orm': { name: 'Drizzle', category: 'database' },\n  knex: { name: 'Knex', category: 'database' },\n  pg: { name: 'PostgreSQL client', category: 'database' },\n  redis: { name: 'Redis client', category: 'database' },\n  ioredis: { name: 'Redis client', category: 'database' },\n};\n\nconst PY_DEP_MAP: Record<string, { name: string; category: Detected['category'] }> = {\n  fastapi: { name: 'FastAPI', category: 'framework' },\n  django: { name: 'Django', category: 'framework' },\n  flask: { name: 'Flask', category: 'framework' },\n  starlette: { name: 'Starlette', category: 'framework' },\n  celery: { name: 'Celery', category: 'framework' },\n  pydantic: { name: 'Pydantic', category: 'tool' },\n  sqlalchemy: { name: 'SQLAlchemy', category: 'database' },\n  alembic: { name: 'Alembic', category: 'database' },\n  pytest: { name: 'pytest', category: 'test' },\n  ruff: { name: 'Ruff', category: 'tool' },\n  mypy: { name: 'mypy', category: 'tool' },\n  black: { name: 'Black', category: 'tool' },\n};\n\nconst TEST_CONFIG_RE =\n  /(^|\\/)(jest\\.config\\.[cm]?[jt]s|jest\\.config\\.json|vitest\\.config\\.[cm]?[jt]s|vitest\\.workspace\\.[cm]?[jt]s|playwright\\.config\\.[cm]?[jt]s|cypress\\.config\\.[cm]?[jt]s|\\.mocharc\\.[a-z]+|pytest\\.ini|tox\\.ini|conftest\\.py|phpunit\\.xml(\\.dist)?|karma\\.conf\\.[cm]?js)$/;\n\nconst AI_FILES = [\n  'CLAUDE.md',\n  'CLAUDE.local.md',\n  '.claude/CLAUDE.md',\n  'AGENTS.md',\n  'GEMINI.md',\n  '.cursorrules',\n  '.github/copilot-instructions.md',\n  '.windsurfrules',\n];\n\n/** Directories that hold samples or test data rather than the project's own code; they must not define its stack. */\nconst AUX_DIRS = new Set(['fixtures', 'fixture', '__fixtures__', 'examples', 'example', 'samples', 'sample', 'testdata', 'test-data', 'demo', 'demos', 'docs', 'doc', 'third_party', 'thirdparty']);\n\nexport function isAuxPath(rel: string): boolean {\n  return rel.split('/').slice(0, -1).some((s) => AUX_DIRS.has(s.toLowerCase()));\n}\n\nfunction parseJsonLoose(text: string | null): Record<string, unknown> | null {\n  if (!text) return null;\n  try {\n    const v = JSON.parse(text);\n    return typeof v === 'object' && v !== null && !Array.isArray(v) ? (v as Record<string, unknown>) : null;\n  } catch {\n    return null;\n  }\n}\n\nfunction strMap(v: unknown): Record<string, string> {\n  const out: Record<string, string> = {};\n  if (typeof v === 'object' && v !== null) {\n    for (const [k, val] of Object.entries(v as Record<string, unknown>)) if (typeof val === 'string') out[k] = val;\n  }\n  return out;\n}\n\nexport async function readPackageJson(root: string, rel: string): Promise<PackageInfo | null> {\n  let text: string | null;\n  try {\n    text = await safeReadText(root, rel, 1024 * 1024);\n  } catch {\n    return null;\n  }\n  const j = parseJsonLoose(text);\n  if (!j) return null;\n  const ws = j.workspaces;\n  const workspaces = Array.isArray(ws)\n    ? ws.filter((x): x is string => typeof x === 'string')\n    : typeof ws === 'object' && ws !== null && Array.isArray((ws as { packages?: unknown }).packages)\n      ? ((ws as { packages: unknown[] }).packages.filter((x) => typeof x === 'string') as string[])\n      : [];\n  const deps = { ...strMap(j.dependencies), ...strMap(j.devDependencies), ...strMap(j.peerDependencies) };\n  return {\n    rel,\n    name: typeof j.name === 'string' ? j.name : undefined,\n    scripts: strMap(j.scripts),\n    deps,\n    workspaces,\n    packageManagerField: typeof j.packageManager === 'string' ? j.packageManager : undefined,\n    hasTypes: 'typescript' in deps,\n    type: typeof j.type === 'string' ? j.type : undefined,\n  };\n}\n\nfunction nodeFrameworks(pkg: PackageInfo): Detected[] {\n  const out = new Map<string, Detected>();\n  for (const dep of Object.keys(pkg.deps)) {\n    const hit = NODE_DEP_MAP[dep];\n    if (hit && !out.has(hit.name)) out.set(hit.name, { ...hit, evidence: pkg.rel });\n  }\n  return [...out.values()];\n}\n\nasync function pythonText(root: string, scan: ScanResult): Promise<{ text: string; evidence: Record<string, string> }> {\n  const names = [...scan.files].filter((f) => {\n    const b = path.posix.basename(f);\n    const depth = f.split('/').length;\n    return depth <= 3 && !isAuxPath(f) && (b === 'pyproject.toml' || /^requirements.*\\.txt$/.test(b) || b === 'Pipfile' || b === 'setup.py' || b === 'setup.cfg');\n  });\n  let text = '';\n  const evidence: Record<string, string> = {};\n  for (const n of names.slice(0, 12)) {\n    const t = await safeReadText(root, n, 256 * 1024).catch(() => null);\n    if (t) {\n      text += `\\n${t.toLowerCase()}`;\n      for (const key of Object.keys(PY_DEP_MAP)) {\n        if (!evidence[key] && new RegExp(`(^|[\\\\s\"'\\\\[,=<>~!-])${key}(?![a-z0-9_])`, 'm').test(t.toLowerCase())) evidence[key] = n;\n      }\n    }\n  }\n  return { text, evidence };\n}\n\nfunction parseWorkspaceYaml(text: string): string[] {\n  const out: string[] = [];\n  for (const line of text.split(/\\r?\\n/)) {\n    const m = /^\\s*-\\s*['\"]?([^'\"#]+?)['\"]?\\s*(?:#.*)?$/.exec(line);\n    if (m && m[1] && !m[1].startsWith('!')) out.push(m[1].trim());\n  }\n  return out;\n}\n\n/** Expand simple workspace globs (\"packages/*\", \"apps/**\" treated as one level, or a literal directory). */\nexport function expandWorkspaceGlobs(patterns: string[], files: Set<string>, manifest: string): string[] {\n  const dirs = new Set<string>();\n  for (const f of files) {\n    if (path.posix.basename(f) === manifest && f.includes('/')) dirs.add(path.posix.dirname(f));\n  }\n  const out = new Set<string>();\n  for (const pat of patterns) {\n    const clean = pat.replace(/^\\.\\//, '').replace(/\\/$/, '');\n    if (!clean.includes('*')) {\n      if (dirs.has(clean)) out.add(clean);\n      continue;\n    }\n    const prefix = clean.slice(0, clean.indexOf('*')).replace(/\\/$/, '');\n    const deep = clean.includes('**');\n    for (const d of dirs) {\n      if (!d.startsWith(prefix + '/')) continue;\n      const rest = d.slice(prefix.length + 1);\n      if (deep || !rest.includes('/')) out.add(d);\n    }\n  }\n  return [...out].sort();\n}\n\nfunction languagesFrom(byExt: Record<string, number>): { name: string; files: number }[] {\n  const acc = new Map<string, number>();\n  for (const [ext, n] of Object.entries(byExt)) {\n    const lang = EXT_LANG[ext];\n    if (lang) acc.set(lang, (acc.get(lang) ?? 0) + n);\n  }\n  return [...acc.entries()].map(([name, files]) => ({ name, files })).sort((a, b) => b.files - a.files || a.name.localeCompare(b.name));\n}\n\nexport interface DetectInput {\n  root: string;\n  projectName: string;\n  scan: ScanResult;\n}\n\nexport async function detectProject(input: DetectInput): Promise<DiscoveryReport> {\n  const { root, scan } = input;\n  const files = scan.files;\n  const has = (rel: string): boolean => files.has(rel);\n  const warnings: string[] = [];\n  const ecosystems = new Set<string>();\n  const frameworks = new Map<string, Detected>();\n  const addFw = (d: Detected): void => {\n    if (!frameworks.has(d.name)) frameworks.set(d.name, d);\n  };\n\n  // Node / JS\n  const rootPkg = has('package.json') ? await readPackageJson(root, 'package.json') : null;\n  if (has('package.json') && !rootPkg) warnings.push('package.json exists but could not be parsed.');\n  if (rootPkg) {\n    ecosystems.add('node');\n    nodeFrameworks(rootPkg).forEach(addFw);\n  }\n  let packageManager: string | null = null;\n  if (has('pnpm-lock.yaml')) packageManager = 'pnpm';\n  else if (has('yarn.lock')) packageManager = 'yarn';\n  else if (has('bun.lockb') || has('bun.lock')) packageManager = 'bun';\n  else if (has('package-lock.json') || has('npm-shrinkwrap.json')) packageManager = 'npm';\n  else if (rootPkg?.packageManagerField) packageManager = rootPkg.packageManagerField.split('@')[0] ?? null;\n  else if (rootPkg) packageManager = 'npm';\n\n  // Python\n  const py = await pythonText(root, scan);\n  const hasPy = has('pyproject.toml') || has('requirements.txt') || has('Pipfile') || has('setup.py') || [...files].some((f) => f.endsWith('.py') && !isAuxPath(f));\n  if (hasPy) {\n    ecosystems.add('python');\n    for (const [k, ev] of Object.entries(py.evidence)) {\n      const m = PY_DEP_MAP[k];\n      if (m) addFw({ ...m, evidence: ev });\n    }\n    if (!packageManager) {\n      if (has('poetry.lock') || py.text.includes('[tool.poetry]')) packageManager = 'poetry';\n      else if (has('uv.lock')) packageManager = 'uv';\n      else if (has('Pipfile')) packageManager = 'pipenv';\n      else if (has('requirements.txt') || has('pyproject.toml')) packageManager = 'pip';\n    }\n  }\n\n  const simple: [string, string, string][] = [\n    ['go.mod', 'go', 'go'],\n    ['Cargo.toml', 'rust', 'cargo'],\n    ['pom.xml', 'java', 'maven'],\n    ['build.gradle', 'java', 'gradle'],\n    ['build.gradle.kts', 'java', 'gradle'],\n    ['composer.json', 'php', 'composer'],\n    ['Gemfile', 'ruby', 'bundler'],\n  ];\n  for (const [file, eco, pm] of simple) {\n    if (has(file)) {\n      ecosystems.add(eco);\n      if (!packageManager) packageManager = pm;\n    }\n  }\n  if ([...files].some((f) => /\\.csproj$/.test(f) && f.split('/').length <= 3)) ecosystems.add('dotnet');\n\n  // Monorepo\n  let monoTool: string | null = null;\n  let workspacePatterns: string[] = [];\n  let manifest = 'package.json';\n  if (has('pnpm-workspace.yaml')) {\n    monoTool = 'pnpm-workspaces';\n    workspacePatterns = parseWorkspaceYaml((await safeReadText(root, 'pnpm-workspace.yaml', 64 * 1024).catch(() => null)) ?? '');\n  } else if (rootPkg && rootPkg.workspaces.length > 0) {\n    monoTool = packageManager === 'yarn' ? 'yarn-workspaces' : 'npm-workspaces';\n    workspacePatterns = rootPkg.workspaces;\n  } else if (has('lerna.json')) monoTool = 'lerna';\n  else if (has('nx.json')) monoTool = 'nx';\n  else if (has('turbo.json')) monoTool = 'turborepo';\n  else if (has('Cargo.toml')) {\n    const cargo = (await safeReadText(root, 'Cargo.toml', 64 * 1024).catch(() => null)) ?? '';\n    if (/^\\[workspace\\]/m.test(cargo)) {\n      monoTool = 'cargo-workspace';\n      manifest = 'Cargo.toml';\n      workspacePatterns = [...cargo.matchAll(/\"([^\"]+)\"/g)].map((m) => m[1]!).filter((s) => !s.includes(' '));\n    }\n  } else if (has('go.work')) monoTool = 'go-work';\n\n  const packages: SubProject[] = [];\n  if (monoTool) {\n    if (workspacePatterns.length === 0 && (monoTool === 'lerna' || monoTool === 'nx' || monoTool === 'turborepo')) {\n      workspacePatterns = ['packages/*', 'apps/*', 'libs/*'];\n    }\n    const dirs = expandWorkspaceGlobs(workspacePatterns, files, manifest).slice(0, 100);\n    for (const d of dirs) {\n      if (manifest === 'package.json') {\n        const p = await readPackageJson(root, `${d}/package.json`);\n        packages.push({\n          path: d,\n          name: p?.name ?? path.posix.basename(d),\n          ecosystem: 'node',\n          frameworks: p ? nodeFrameworks(p).map((f) => f.name) : [],\n        });\n        if (p) nodeFrameworks(p).forEach(addFw);\n      } else {\n        packages.push({ path: d, name: path.posix.basename(d), ecosystem: 'rust', frameworks: [] });\n      }\n    }\n  }\n\n  const testConfigs = [...files].filter((f) => TEST_CONFIG_RE.test(f) && f.split('/').length <= 4 && !isAuxPath(f)).sort().slice(0, 30);\n  const ci = [\n    ...[...files].filter((f) => f.startsWith('.github/workflows/')),\n    ...['.gitlab-ci.yml', 'azure-pipelines.yml', 'Jenkinsfile', '.travis.yml', 'bitbucket-pipelines.yml', '.circleci/config.yml'].filter(has),\n  ].sort();\n  const docker = [...files].filter((f) => !isAuxPath(f) && /(^|\\/)(Dockerfile(\\..+)?|docker-compose[^/]*\\.ya?ml|compose\\.ya?ml)$/.test(f) && f.split('/').length <= 3).sort();\n  const deployment = [\n    'vercel.json',\n    'netlify.toml',\n    'fly.toml',\n    'render.yaml',\n    'Procfile',\n    'app.yaml',\n    'serverless.yml',\n    'wrangler.toml',\n    'railway.json',\n    'firebase.json',\n    'Chart.yaml',\n  ]\n    .filter(has)\n    .concat([...files].filter((f) => /^(k8s|kubernetes|deploy|infra|terraform)\\//.test(f)).slice(0, 5))\n    .sort();\n  const aiInstructions = [...AI_FILES.filter(has), ...[...files].filter((f) => f.startsWith('.claude/') && /\\.(md|json)$/.test(f)).slice(0, 20)].sort();\n  const docs = [\n    ...[...files].filter((f) => /^readme(\\.[a-z]+)?$/i.test(f)),\n    ...[...files].filter((f) => /^docs\\/[^/]+\\.(md|mdx|rst)$/i.test(f)).slice(0, 15),\n    ...['CONTRIBUTING.md', 'ARCHITECTURE.md', 'CHANGELOG.md'].filter(has),\n  ].sort();\n\n  const entryHints: string[] = [];\n  for (const cand of ['src/index.ts', 'src/main.ts', 'src/app.ts', 'src/server.ts', 'index.js', 'server.js', 'app.js', 'main.py', 'app/main.py', 'main.go', 'cmd', 'src/main.rs', 'manage.py', 'src/App.tsx', 'app/layout.tsx']) {\n    if (has(cand) || [...files].some((f) => f.startsWith(cand + '/'))) entryHints.push(cand);\n  }\n\n  const commands = buildContract({\n    pkg: rootPkg,\n    packageManager,\n    ecosystems,\n    has,\n    pythonEvidence: py.evidence,\n    files,\n  });\n\n  if (scan.truncated) warnings.push('Scan hit its file or depth limit; discovery is partial.');\n  if (scan.sensitiveFiles.length > 0) warnings.push('Credential-like files exist; their contents were not read.');\n  if (!has('README.md') && !docs.some((d) => /^readme/i.test(d))) warnings.push('No README found.');\n\n  return {\n    schemaVersion: 1,\n    project: { name: rootPkg?.name ?? input.projectName },\n    scan: {\n      fileCount: scan.fileCount,\n      dirCount: scan.dirCount,\n      truncated: scan.truncated,\n      skippedSymlinks: scan.skippedSymlinks,\n      ignoredEntries: scan.ignoredEntries,\n    },\n    languages: languagesFrom(scan.byExtension).slice(0, 12),\n    topDirs: scan.topDirs,\n    ecosystems: [...ecosystems].sort(),\n    packageManager,\n    frameworks: [...frameworks.values()].sort((a, b) => a.name.localeCompare(b.name)),\n    monorepo: { tool: monoTool, packages },\n    commands,\n    testConfigs,\n    ci,\n    docker,\n    deployment,\n    aiInstructions,\n    docs,\n    sensitiveFilesPresent: scan.sensitiveFiles.filter((f) => isSensitiveFile(f)),\n    entryHints,\n    warnings,\n  };\n}\n"]}
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Their content is never read. */\n  sensitiveFilesPresent: string[];\n  entryHints: string[];\n  warnings: string[];\n}\n\nconst EXT_LANG: Record<string, string> = {\n  '.ts': 'TypeScript',\n  '.tsx': 'TypeScript',\n  '.mts': 'TypeScript',\n  '.cts': 'TypeScript',\n  '.js': 'JavaScript',\n  '.jsx': 'JavaScript',\n  '.mjs': 'JavaScript',\n  '.cjs': 'JavaScript',\n  '.py': 'Python',\n  '.go': 'Go',\n  '.rs': 'Rust',\n  '.java': 'Java',\n  '.kt': 'Kotlin',\n  '.php': 'PHP',\n  '.rb': 'Ruby',\n  '.cs': 'C#',\n  '.swift': 'Swift',\n  '.c': 'C',\n  '.h': 'C',\n  '.cpp': 'C++',\n  '.cc': 'C++',\n  '.hpp': 'C++',\n  '.vue': 'Vue',\n  '.svelte': 'Svelte',\n  '.sql': 'SQL',\n};\n\nconst NODE_DEP_MAP: Record<string, { name: string; category: Detected['category'] }> = {\n  express: { name: 'Express', category: 'framework' },\n  fastify: { name: 'Fastify', category: 'framework' },\n  koa: { name: 'Koa', category: 'framework' },\n  hono: { name: 'Hono', category: 'framework' },\n  '@nestjs/core': { name: 'NestJS', category: 'framework' },\n  next: { name: 'Next.js', category: 'framework' },\n  react: { name: 'React', category: 'framework' },\n  vue: { name: 'Vue', category: 'framework' },\n  nuxt: { name: 'Nuxt', category: 'framework' },\n  svelte: { name: 'Svelte', category: 'framework' },\n  '@sveltejs/kit': { name: 'SvelteKit', category: 'framework' },\n  '@angular/core': { name: 'Angular', category: 'framework' },\n  astro: { name: 'Astro', category: 'framework' },\n  electron: { name: 'Electron', category: 'framework' },\n  '@remix-run/react': { name: 'Remix', category: 'framework' },\n  vite: { name: 'Vite', category: 'tool' },\n  typescript: { name: 'TypeScript', category: 'tool' },\n  eslint: { name: 'ESLint', category: 'tool' },\n  prettier: { name: 'Prettier', category: 'tool' },\n  tailwindcss: { name: 'Tailwind CSS', category: 'tool' },\n  webpack: { name: 'webpack', category: 'tool' },\n  '@biomejs/biome': { name: 'Biome', category: 'tool' },\n  jest: { name: 'Jest', category: 'test' },\n  vitest: { name: 'Vitest', category: 'test' },\n  mocha: { name: 'Mocha', category: 'test' },\n  '@playwright/test': { name: 'Playwright', category: 'test' },\n  cypress: { name: 'Cypress', category: 'test' },\n  prisma: { name: 'Prisma', category: 'database' },\n  '@prisma/client': { name: 'Prisma', category: 'database' },\n  typeorm: { name: 'TypeORM', category: 'database' },\n  mongoose: { name: 'Mongoose', category: 'database' },\n  sequelize: { name: 'Sequelize', category: 'database' },\n  'drizzle-orm': { name: 'Drizzle', category: 'database' },\n  knex: { name: 'Knex', category: 'database' },\n  pg: { name: 'PostgreSQL client', category: 'database' },\n  redis: { name: 'Redis client', category: 'database' },\n  ioredis: { name: 'Redis client', category: 'database' },\n};\n\nconst PY_DEP_MAP: Record<string, { name: string; category: Detected['category'] }> = {\n  fastapi: { name: 'FastAPI', category: 'framework' },\n  django: { name: 'Django', category: 'framework' },\n  flask: { name: 'Flask', category: 'framework' },\n  starlette: { name: 'Starlette', category: 'framework' },\n  celery: { name: 'Celery', category: 'framework' },\n  pydantic: { name: 'Pydantic', category: 'tool' },\n  sqlalchemy: { name: 'SQLAlchemy', category: 'database' },\n  alembic: { name: 'Alembic', category: 'database' },\n  pytest: { name: 'pytest', category: 'test' },\n  ruff: { name: 'Ruff', category: 'tool' },\n  mypy: { name: 'mypy', category: 'tool' },\n  black: { name: 'Black', category: 'tool' },\n};\n\nconst TEST_CONFIG_RE =\n  /(^|\\/)(jest\\.config\\.[cm]?[jt]s|jest\\.config\\.json|vitest\\.config\\.[cm]?[jt]s|vitest\\.workspace\\.[cm]?[jt]s|playwright\\.config\\.[cm]?[jt]s|cypress\\.config\\.[cm]?[jt]s|\\.mocharc\\.[a-z]+|pytest\\.ini|tox\\.ini|conftest\\.py|phpunit\\.xml(\\.dist)?|karma\\.conf\\.[cm]?js)$/;\n\nconst AI_FILES = [\n  'CLAUDE.md',\n  'CLAUDE.local.md',\n  '.claude/CLAUDE.md',\n  'AGENTS.md',\n  'GEMINI.md',\n  '.cursorrules',\n  '.github/copilot-instructions.md',\n  '.windsurfrules',\n];\n\n/** Directories that hold samples or test data rather than the project's own code; they must not define its stack. */\nconst AUX_DIRS = new Set(['fixtures', 'fixture', '__fixtures__', 'examples', 'example', 'samples', 'sample', 'testdata', 'test-data', 'demo', 'demos', 'docs', 'doc', 'third_party', 'thirdparty']);\n\nexport function isAuxPath(rel: string): boolean {\n  return rel.split('/').slice(0, -1).some((s) => AUX_DIRS.has(s.toLowerCase()));\n}\n\nfunction parseJsonLoose(text: string | null): Record<string, unknown> | null {\n  if (!text) return null;\n  try {\n    const v = JSON.parse(text);\n    return typeof v === 'object' && v !== null && !Array.isArray(v) ? (v as Record<string, unknown>) : null;\n  } catch {\n    return null;\n  }\n}\n\nfunction strMap(v: unknown): Record<string, string> {\n  const out: Record<string, string> = {};\n  if (typeof v === 'object' && v !== null) {\n    for (const [k, val] of Object.entries(v as Record<string, unknown>)) if (typeof val === 'string') out[k] = val;\n  }\n  return out;\n}\n\nexport async function readPackageJson(root: string, rel: string): Promise<PackageInfo | null> {\n  let text: string | null;\n  try {\n    text = await safeReadText(root, rel, 1024 * 1024);\n  } catch {\n    return null;\n  }\n  const j = parseJsonLoose(text);\n  if (!j) return null;\n  const ws = j.workspaces;\n  const workspaces = Array.isArray(ws)\n    ? ws.filter((x): x is string => typeof x === 'string')\n    : typeof ws === 'object' && ws !== null && Array.isArray((ws as { packages?: unknown }).packages)\n      ? ((ws as { packages: unknown[] }).packages.filter((x) => typeof x === 'string') as string[])\n      : [];\n  const deps = { ...strMap(j.dependencies), ...strMap(j.devDependencies), ...strMap(j.peerDependencies) };\n  return {\n    rel,\n    name: typeof j.name === 'string' ? j.name : undefined,\n    scripts: strMap(j.scripts),\n    deps,\n    workspaces,\n    packageManagerField: typeof j.packageManager === 'string' ? j.packageManager : undefined,\n    hasTypes: 'typescript' in deps,\n    type: typeof j.type === 'string' ? j.type : undefined,\n  };\n}\n\nfunction nodeFrameworks(pkg: PackageInfo): Detected[] {\n  const out = new Map<string, Detected>();\n  for (const dep of Object.keys(pkg.deps)) {\n    const hit = NODE_DEP_MAP[dep];\n    if (hit && !out.has(hit.name)) out.set(hit.name, { ...hit, evidence: pkg.rel });\n  }\n  return [...out.values()];\n}\n\nasync function pythonText(root: string, scan: ScanResult): Promise<{ text: string; evidence: Record<string, string> }> {\n  const names = [...scan.files].filter((f) => {\n    const b = path.posix.basename(f);\n    const depth = f.split('/').length;\n    return depth <= 3 && !isAuxPath(f) && (b === 'pyproject.toml' || /^requirements.*\\.txt$/.test(b) || b === 'Pipfile' || b === 'setup.py' || b === 'setup.cfg');\n  });\n  let text = '';\n  const evidence: Record<string, string> = {};\n  for (const n of names.slice(0, 12)) {\n    const t = await safeReadText(root, n, 256 * 1024).catch(() => null);\n    if (t) {\n      text += `\\n${t.toLowerCase()}`;\n      for (const key of Object.keys(PY_DEP_MAP)) {\n        if (!evidence[key] && new RegExp(`(^|[\\\\s\"'\\\\[,=<>~!-])${key}(?![a-z0-9_])`, 'm').test(t.toLowerCase())) evidence[key] = n;\n      }\n    }\n  }\n  return { text, evidence };\n}\n\nfunction parseWorkspaceYaml(text: string): string[] {\n  const out: string[] = [];\n  for (const line of text.split(/\\r?\\n/)) {\n    const m = /^\\s*-\\s*['\"]?([^'\"#]+?)['\"]?\\s*(?:#.*)?$/.exec(line);\n    if (m && m[1] && !m[1].startsWith('!')) out.push(m[1].trim());\n  }\n  return out;\n}\n\n/** Expand simple workspace globs (\"packages/*\", \"apps/**\" treated as one level, or a literal directory). */\nexport function expandWorkspaceGlobs(patterns: string[], files: Set<string>, manifest: string): string[] {\n  const dirs = new Set<string>();\n  for (const f of files) {\n    if (path.posix.basename(f) === manifest && f.includes('/')) dirs.add(path.posix.dirname(f));\n  }\n  const out = new Set<string>();\n  for (const pat of patterns) {\n    const clean = pat.replace(/^\\.\\//, '').replace(/\\/$/, '');\n    if (!clean.includes('*')) {\n      if (dirs.has(clean)) out.add(clean);\n      continue;\n    }\n    const prefix = clean.slice(0, clean.indexOf('*')).replace(/\\/$/, '');\n    const deep = clean.includes('**');\n    for (const d of dirs) {\n      if (!d.startsWith(prefix + '/')) continue;\n      const rest = d.slice(prefix.length + 1);\n      if (deep || !rest.includes('/')) out.add(d);\n    }\n  }\n  return [...out].sort();\n}\n\nfunction languagesFrom(byExt: Record<string, number>): { name: string; files: number }[] {\n  const acc = new Map<string, number>();\n  for (const [ext, n] of Object.entries(byExt)) {\n    const lang = EXT_LANG[ext];\n    if (lang) acc.set(lang, (acc.get(lang) ?? 0) + n);\n  }\n  return [...acc.entries()].map(([name, files]) => ({ name, files })).sort((a, b) => b.files - a.files || a.name.localeCompare(b.name));\n}\n\nexport interface DetectInput {\n  root: string;\n  projectName: string;\n  scan: ScanResult;\n}\n\nconst LOCKFILES: [string, string][] = [\n  ['pnpm-lock.yaml', 'pnpm'],\n  ['yarn.lock', 'yarn'],\n  ['bun.lockb', 'bun'],\n  ['bun.lock', 'bun'],\n  ['package-lock.json', 'npm'],\n  ['npm-shrinkwrap.json', 'npm'],\n];\n\nconst MAX_NODE_PACKAGES = 200;\nconst MAX_MANIFEST_DEPTH = 5;\n\n/** A package.json that only sets {\"type\":\"module\"} (a marker file) is not a package. */\nfunction isRealManifest(p: PackageInfo): boolean {\n  return !!p.name || Object.keys(p.scripts).length > 0 || Object.keys(p.deps).length > 0 || p.workspaces.length > 0;\n}\n\nfunction lockfilePm(files: Set<string>, dir: string): string | null {\n  for (const [lock, pm] of LOCKFILES) if (files.has(dir ? `${dir}/${lock}` : lock)) return pm;\n  return null;\n}\n\nexport interface FoundNodePackage extends NodePackageInput {\n  manifest: string;\n  /** Where the package manager came from, for transparency in discovery.json consumers. */\n  pmSource: 'lockfile' | 'packageManager field' | 'inherited from root' | 'default';\n}\n\n/**\n * Find every Node.js package, not just the root one. Each package gets its own package manager from its own lockfile\n * (falling back to the packageManager field, then the root lockfile, then npm). No script is ever executed.\n */\nexport async function discoverNodePackages(root: string, files: Set<string>): Promise<{ packages: FoundNodePackage[]; unparsable: string[] }> {\n  const manifests = [...files]\n    .filter((f) => path.posix.basename(f) === 'package.json' && !isAuxPath(f) && f.split('/').length <= MAX_MANIFEST_DEPTH)\n    .sort((a, b) => a.split('/').length - b.split('/').length || a.localeCompare(b))\n    .slice(0, MAX_NODE_PACKAGES);\n  const rootLockPm = lockfilePm(files, '');\n  const packages: FoundNodePackage[] = [];\n  const unparsable: string[] = [];\n  for (const manifest of manifests) {\n    const pkg = await readPackageJson(root, manifest);\n    if (!pkg) {\n      unparsable.push(manifest);\n      continue;\n    }\n    if (!isRealManifest(pkg)) continue;\n    const dir = path.posix.dirname(manifest) === '.' ? '' : path.posix.dirname(manifest);\n    const own = lockfilePm(files, dir);\n    const field = pkg.packageManagerField?.split('@')[0] ?? null;\n    let packageManager: string;\n    let pmSource: FoundNodePackage['pmSource'];\n    if (own) {\n      packageManager = own;\n      pmSource = 'lockfile';\n    } else if (field) {\n      packageManager = field;\n      pmSource = 'packageManager field';\n    } else if (rootLockPm && dir !== '') {\n      packageManager = rootLockPm;\n      pmSource = 'inherited from root';\n    } else {\n      packageManager = 'npm';\n      pmSource = 'default';\n    }\n    packages.push({ dir, pkg, packageManager, hasTsconfig: files.has(dir ? `${dir}/tsconfig.json` : 'tsconfig.json'), manifest, pmSource });\n  }\n  return { packages, unparsable };\n}\n\nexport async function detectProject(input: DetectInput): Promise<DiscoveryReport> {\n  const { root, scan } = input;\n  const files = scan.files;\n  const has = (rel: string): boolean => files.has(rel);\n  const warnings: string[] = [];\n  const ecosystems = new Set<string>();\n  const frameworks = new Map<string, Detected>();\n  const addFw = (d: Detected): void => {\n    if (!frameworks.has(d.name)) frameworks.set(d.name, d);\n  };\n\n  // Node / JS: every package.json, not only the one at the root\n  const { packages: nodePkgs, unparsable } = await discoverNodePackages(root, files);\n  for (const m of unparsable.slice(0, 5)) warnings.push(`${m} exists but could not be parsed.`);\n  const rootNode = nodePkgs.find((p) => p.dir === '');\n  const rootPkg = rootNode?.pkg ?? null;\n  if (nodePkgs.length > 0) {\n    ecosystems.add('node');\n    for (const p of nodePkgs) nodeFrameworks(p.pkg).forEach(addFw);\n  }\n  let packageManager: string | null = null;\n  const pms = [...new Set(nodePkgs.map((p) => p.packageManager))].sort();\n  if (pms.length === 1) packageManager = pms[0]!;\n  else if (pms.length > 1) packageManager = `mixed (${pms.join(', ')})`;\n\n  // Python\n  const py = await pythonText(root, scan);\n  const hasPy = has('pyproject.toml') || has('requirements.txt') || has('Pipfile') || has('setup.py') || [...files].some((f) => f.endsWith('.py') && !isAuxPath(f));\n  if (hasPy) {\n    ecosystems.add('python');\n    for (const [k, ev] of Object.entries(py.evidence)) {\n      const m = PY_DEP_MAP[k];\n      if (m) addFw({ ...m, evidence: ev });\n    }\n    if (!packageManager) {\n      if (has('poetry.lock') || py.text.includes('[tool.poetry]')) packageManager = 'poetry';\n      else if (has('uv.lock')) packageManager = 'uv';\n      else if (has('Pipfile')) packageManager = 'pipenv';\n      else if (has('requirements.txt') || has('pyproject.toml')) packageManager = 'pip';\n    }\n  }\n\n  const simple: [string, string, string][] = [\n    ['go.mod', 'go', 'go'],\n    ['Cargo.toml', 'rust', 'cargo'],\n    ['pom.xml', 'java', 'maven'],\n    ['build.gradle', 'java', 'gradle'],\n    ['build.gradle.kts', 'java', 'gradle'],\n    ['composer.json', 'php', 'composer'],\n    ['Gemfile', 'ruby', 'bundler'],\n  ];\n  for (const [file, eco, pm] of simple) {\n    if (has(file)) {\n      ecosystems.add(eco);\n      if (!packageManager) packageManager = pm;\n    }\n  }\n  if ([...files].some((f) => /\\.csproj$/.test(f) && f.split('/').length <= 3)) ecosystems.add('dotnet');\n\n  // Monorepo\n  let monoTool: string | null = null;\n  let workspacePatterns: string[] = [];\n  let manifest = 'package.json';\n  if (has('pnpm-workspace.yaml')) {\n    monoTool = 'pnpm-workspaces';\n    workspacePatterns = parseWorkspaceYaml((await safeReadText(root, 'pnpm-workspace.yaml', 64 * 1024).catch(() => null)) ?? '');\n  } else if (rootPkg && rootPkg.workspaces.length > 0) {\n    monoTool = rootNode?.packageManager === 'yarn' ? 'yarn-workspaces' : 'npm-workspaces';\n    workspacePatterns = rootPkg.workspaces;\n  } else if (has('lerna.json')) monoTool = 'lerna';\n  else if (has('nx.json')) monoTool = 'nx';\n  else if (has('turbo.json')) monoTool = 'turborepo';\n  else if (has('Cargo.toml')) {\n    const cargo = (await safeReadText(root, 'Cargo.toml', 64 * 1024).catch(() => null)) ?? '';\n    if (/^\\[workspace\\]/m.test(cargo)) {\n      monoTool = 'cargo-workspace';\n      manifest = 'Cargo.toml';\n      workspacePatterns = [...cargo.matchAll(/\"([^\"]+)\"/g)].map((m) => m[1]!).filter((s) => !s.includes(' '));\n    }\n  } else if (has('go.work')) monoTool = 'go-work';\n\n  const packages: SubProject[] = [];\n  for (const p of nodePkgs) {\n    if (p.dir === '') continue;\n    packages.push({ path: p.dir, name: p.pkg.name ?? path.posix.basename(p.dir), ecosystem: 'node', frameworks: nodeFrameworks(p.pkg).map((f) => f.name), packageManager: p.packageManager });\n  }\n  if (monoTool === 'cargo-workspace') {\n    for (const d of expandWorkspaceGlobs(workspacePatterns, files, manifest).slice(0, 100)) {\n      packages.push({ path: d, name: path.posix.basename(d), ecosystem: 'rust', frameworks: [] });\n    }\n  }\n  // Several packages without any workspace tooling (e.g. backend/ + frontend/ and no root package.json) is still one repository of many packages.\n  if (!monoTool && nodePkgs.length >= 2) monoTool = 'multi-package';\n\n  const testConfigs = [...files].filter((f) => TEST_CONFIG_RE.test(f) && f.split('/').length <= 4 && !isAuxPath(f)).sort().slice(0, 30);\n  const ci = [\n    ...[...files].filter((f) => f.startsWith('.github/workflows/')),\n    ...['.gitlab-ci.yml', 'azure-pipelines.yml', 'Jenkinsfile', '.travis.yml', 'bitbucket-pipelines.yml', '.circleci/config.yml'].filter(has),\n  ].sort();\n  const docker = [...files].filter((f) => !isAuxPath(f) && /(^|\\/)(Dockerfile(\\..+)?|docker-compose[^/]*\\.ya?ml|compose\\.ya?ml)$/.test(f) && f.split('/').length <= 3).sort();\n  const deployment = [\n    'vercel.json',\n    'netlify.toml',\n    'fly.toml',\n    'render.yaml',\n    'Procfile',\n    'app.yaml',\n    'serverless.yml',\n    'wrangler.toml',\n    'railway.json',\n    'firebase.json',\n    'Chart.yaml',\n  ]\n    .filter(has)\n    .concat([...files].filter((f) => /^(k8s|kubernetes|deploy|infra|terraform)\\//.test(f)).slice(0, 5))\n    .sort();\n  const aiInstructions = [...AI_FILES.filter(has), ...[...files].filter((f) => f.startsWith('.claude/') && /\\.(md|json)$/.test(f)).slice(0, 20)].sort();\n  const docs = [\n    ...[...files].filter((f) => /^readme(\\.[a-z]+)?$/i.test(f)),\n    ...[...files].filter((f) => /^docs\\/[^/]+\\.(md|mdx|rst)$/i.test(f)).slice(0, 15),\n    ...['CONTRIBUTING.md', 'ARCHITECTURE.md', 'CHANGELOG.md'].filter(has),\n  ].sort();\n\n  const entryHints: string[] = [];\n  for (const cand of ['src/index.ts', 'src/main.ts', 'src/app.ts', 'src/server.ts', 'index.js', 'server.js', 'app.js', 'main.py', 'app/main.py', 'main.go', 'cmd', 'src/main.rs', 'manage.py', 'src/App.tsx', 'app/layout.tsx']) {\n    if (has(cand) || [...files].some((f) => f.startsWith(cand + '/'))) entryHints.push(cand);\n  }\n\n  const commands = buildContract({\n    nodePackages: nodePkgs,\n    ecosystems,\n    has,\n    pythonEvidence: py.evidence,\n    files,\n  });\n\n  const languages = languagesFrom(scan.byExtension).slice(0, 12);\n  if (ecosystems.size === 0 && languages.length > 0) {\n    warnings.push(\n      `No ecosystem was recognised although source files were found (${languages.slice(0, 3).map((l) => l.name).join(', ')}). Package manifests may be missing or unsupported; record verification commands by hand in .devworkspace/context/commands.json.`,\n    );\n  }\n  if (ecosystems.size > 0 && !commands.some((c) => c.available)) {\n    warnings.push('No verification commands (tests, lint, typecheck, build) were found in the package manifests.');\n  }\n  if (scan.truncated) warnings.push('Scan hit its file or depth limit; discovery is partial.');\n  if (scan.sensitiveFiles.length > 0) warnings.push('Credential-like files exist; their contents were not read.');\n  if (!has('README.md') && !docs.some((d) => /^readme/i.test(d))) warnings.push('No README found.');\n\n  return {\n    schemaVersion: 1,\n    project: { name: rootPkg?.name ?? input.projectName },\n    scan: {\n      fileCount: scan.fileCount,\n      dirCount: scan.dirCount,\n      truncated: scan.truncated,\n      skippedSymlinks: scan.skippedSymlinks,\n      ignoredEntries: scan.ignoredEntries,\n    },\n    languages,\n    topDirs: scan.topDirs,\n    ecosystems: [...ecosystems].sort(),\n    packageManager,\n    frameworks: [...frameworks.values()].sort((a, b) => a.name.localeCompare(b.name)),\n    monorepo: { tool: monoTool, packages },\n    commands,\n    manifests: [...nodePkgs.map((p) => p.manifest), ...['pyproject.toml', 'requirements.txt', 'Pipfile', 'go.mod', 'Cargo.toml', 'pom.xml', 'build.gradle', 'build.gradle.kts', 'composer.json', 'Gemfile'].filter(has)].sort(),\n    testConfigs,\n    ci,\n    docker,\n    deployment,\n    aiInstructions,\n    docs,\n    sensitiveFilesPresent: scan.sensitiveFiles.filter((f) => isSensitiveFile(f)),\n    entryHints,\n    warnings,\n  };\n}\n"]}

package/dist/integrations/adapters/graphify.js

@@ -3,6 +3,7 @@ import path from 'node:path';
 import { compareVersions, findPython, findTool } from '../exec.js';
 import { GRAPHIFY_NOTICE, writeThirdPartyNotice } from '../notices.js';
 import { pathExists } from '../../utils/fs.js';
+import { persistentPathHas } from '../persistentPath.js';
 /**
  * Graphify. Verified against the published package (graphifyy 0.9.82) and its CLI help on 2026-10-09:
  *  - PyPI package `graphifyy`, executable `graphify`; README documents pip and pipx (pipx recommended on Windows)
@@ -12,7 +13,6 @@ import { pathExists } from '../../utils/fs.js';
  *    It merges and is idempotent, but it does change files the user owns, so every run is snapshotted and verified.
  * uv is not mentioned in the README; `uv tool install` is used because it is the equivalent of pipx for console tools.
  */
-const EXE = process.platform === 'win32' ? 'graphify.exe' : 'graphify';
 const MIN_PYTHON = '3.10.0';
 async function exists(p) {
     return pathExists(p);
@@ -25,7 +25,7 @@ async function locate(ctx, deep) {
     if (deep)
         dirs.push(...(await toolBinDirs(ctx)));
     for (const d of dirs) {
-        const candidate = path.join(d, ctx.platform === 'win32' ? 'graphify.exe' : EXE);
+        const candidate = path.join(d, ctx.platform === 'win32' ? 'graphify.exe' : 'graphify');
         if (await exists(candidate))
             return { path: candidate, onPath: false };
     }
@@ -69,6 +69,35 @@ function pathAdvice(ctx, dir) {
         ? [`${where} (Settings > System > About > Advanced system settings > Environment Variables), or run \`pipx ensurepath\` / \`uv tool update-shell\`, then open a new terminal.`]
         : [`${where}, or run \`pipx ensurepath\` / \`uv tool update-shell\`, then open a new terminal.`];
 }
+/**
+ * Why is graphify not on this process's PATH? On Windows the registry tells us whether the folder is already on the
+ * persistent PATH (then a restart is the fix and adding it again would be wrong advice) or genuinely missing from it.
+ * Elsewhere, or when the registry cannot be read, the persistent PATH is unknown and the general advice is kept.
+ * Only called for deep inspections; quick checks never spawn a process.
+ */
+async function diagnoseMissingPath(ctx, dir) {
+    const persistent = await ctx.persistentPath();
+    const where = persistent ? persistentPathHas(persistent, dir) : null;
+    if (persistent && where) {
+        return {
+            staleSession: true,
+            explanation: `graphify is on your ${where} PATH (${dir}), but this terminal or editor started before that was set, so processes launched from it (including Claude Code hooks) still cannot find it.`,
+            nextSteps: ['Close and reopen your terminal, or restart VS Code (and Claude Code), so it inherits the updated PATH. No change to PATH is needed. Then run: devworkspace doctor'],
+        };
+    }
+    if (persistent) {
+        return {
+            staleSession: false,
+            explanation: `graphify is not on your PATH: ${dir} is missing from this terminal's PATH and from your persistent user and machine PATH.`,
+            nextSteps: pathAdvice(ctx, dir),
+        };
+    }
+    return {
+        staleSession: false,
+        explanation: 'graphify is not on this terminal\'s PATH.',
+        nextSteps: [...pathAdvice(ctx, dir), 'If you already added it, restart the terminal or editor so it picks up the change.'],
+    };
+}
 export const graphify = {
     id: 'graphify',
     name: 'Graphify',
@@ -131,13 +160,22 @@ export const graphify = {
             nextSteps.push('devworkspace integrations repair --yes');
             return { ...base, status: 'DEGRADED', variant: 'cli + stale project skill', scope, version, warnings, nextSteps };
         }
-        if (hooks && !loc.onPath) {
-            warnings.push('Claude Code hooks call `graphify` by name, but it is not on PATH in this terminal, so the hooks would fail.');
-            nextSteps.push(...pathAdvice(ctx, loc.path ? path.dirname(loc.path) : null));
-            return { ...base, status: 'DEGRADED', variant: 'cli + project skill (PATH missing)', scope, version, warnings, nextSteps };
+        if (!loc.onPath) {
+            const dir = path.dirname(loc.path);
+            // Only a deep inspection may ask the registry; a quick check keeps the general advice.
+            const diag = deep
+                ? await diagnoseMissingPath(ctx, dir)
+                : { staleSession: false, explanation: 'graphify is not on this terminal\'s PATH.', nextSteps: pathAdvice(ctx, dir) };
+            if (hooks) {
+                warnings.push(`Claude Code hooks call \`graphify\` by name, so they fail until it is found. ${diag.explanation}`);
+                nextSteps.push(...diag.nextSteps);
+                return diag.staleSession
+                    ? { ...base, status: 'RESTART_REQUIRED', variant: 'cli + project skill (restart terminal)', scope, version, warnings, nextSteps }
+                    : { ...base, status: 'DEGRADED', variant: 'cli + project skill (PATH missing)', scope, version, warnings, nextSteps };
+            }
+            warnings.push(diag.explanation);
+            nextSteps.push(...diag.nextSteps);
         }
-        if (!loc.onPath)
-            warnings.push(`graphify is installed but not on PATH. ${pathAdvice(ctx, path.dirname(loc.path))[0]}`);
         return { ...base, status: deep ? 'VERIFIED' : 'INSTALLED', variant: 'cli + project skill', scope, version, warnings, nextSteps };
     },
     async plan(ctx, report) {

package/dist/integrations/adapters/graphify.js.map

@@ -1 +1 @@
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{ promises as fs } from 'node:fs';\nimport path from 'node:path';\nimport { compareVersions, findPython, findTool } from '../exec.js';\nimport { GRAPHIFY_NOTICE, writeThirdPartyNotice } from '../notices.js';\nimport type { AdapterContext, Check, IntegrationAdapter, IntegrationReport, PlanResult, PlanStep, StepOutcome } from '../types.js';\nimport { pathExists } from '../../utils/fs.js';\n\n/**\n * Graphify. Verified against the published package (graphifyy 0.9.82) and its CLI help on 2026-10-09:\n *  - PyPI package `graphifyy`, executable `graphify`; README documents pip and pipx (pipx recommended on Windows)\n *  - `graphify --version` prints \"graphify <version>\"\n *  - `graphify install --project` writes .claude/skills/graphify/, appends a graphify section to CLAUDE.md,\n *    creates .claude/CLAUDE.md and registers PreToolUse hooks (`graphify hook-guard ...`) in .claude/settings.json.\n *    It merges and is idempotent, but it does change files the user owns, so every run is snapshotted and verified.\n * uv is not mentioned in the README; `uv tool install` is used because it is the equivalent of pipx for console tools.\n */\n\nconst EXE = process.platform === 'win32' ? 'graphify.exe' : 'graphify';\nconst MIN_PYTHON = '3.10.0';\n\ninterface Located {\n  path: string | null;\n  onPath: boolean;\n}\n\nasync function exists(p: string): Promise<boolean> {\n  return pathExists(p);\n}\n\nasync function locate(ctx: AdapterContext, deep: boolean): Promise<Located> {\n  const onPath = await ctx.runner.which('graphify');\n  if (onPath) return { path: onPath, onPath: true };\n  const dirs = [path.join(ctx.home, '.local', 'bin')];\n  if (deep) dirs.push(...(await toolBinDirs(ctx)));\n  for (const d of dirs) {\n    const candidate = path.join(d, ctx.platform === 'win32' ? 'graphify.exe' : EXE);\n    if (await exists(candidate)) return { path: candidate, onPath: false };\n  }\n  return { path: null, onPath: false };\n}\n\n/** Where uv, pipx and `pip --user` put console scripts, asked from the tools themselves (they differ by OS and version). */\nasync function toolBinDirs(ctx: AdapterContext): Promise<string[]> {\n  const out: string[] = [];\n  const uv = await findTool(ctx.runner, 'uv', ctx.signal);\n  if (uv) {\n    const r = await ctx.runner.run({ command: uv.command, args: ['tool', 'dir', '--bin'], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  const pipx = await findTool(ctx.runner, 'pipx', ctx.signal);\n  if (pipx) {\n    const r = await ctx.runner.run({ command: pipx.command, args: ['environment', '--value', 'PIPX_BIN_DIR'], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  const py = await findPython(ctx.runner, ctx.platform, ctx.signal);\n  if (py) {\n    const code = \"import sysconfig,os;print(sysconfig.get_path('scripts', os.name + '_user'))\";\n    const r = await ctx.runner.run({ command: py.command, args: [...py.args, '-c', code], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  return out;\n}\n\nasync function readText(p: string): Promise<string | null> {\n  try {\n    return await fs.readFile(p, 'utf8');\n  } catch {\n    return null;\n  }\n}\n\nfunction pathAdvice(ctx: AdapterContext, dir: string | null): string[] {\n  const where = dir ? `Add ${dir} to your PATH` : 'Add the folder containing graphify to your PATH';\n  return ctx.platform === 'win32'\n    ? [`${where} (Settings > System > About > Advanced system settings > Environment Variables), or run \\`pipx ensurepath\\` / \\`uv tool update-shell\\`, then open a new terminal.`]\n    : [`${where}, or run \\`pipx ensurepath\\` / \\`uv tool update-shell\\`, then open a new terminal.`];\n}\n\nexport const graphify: IntegrationAdapter = {\n  id: 'graphify',\n  name: 'Graphify',\n  required: true,\n  docsUrl: 'https://github.com/Graphify-Labs/graphify',\n  usage:\n    'For \"where is X / what depends on Y\" questions, query the Graphify graph first (graphify query \"<question>\", graphify path \"<A>\" \"<B>\", graphify explain \"<concept>\") ' +\n    'or use the /graphify skill. The graph is a navigation aid, not a source of truth: confirm in the actual files before relying on it. After editing code, `graphify update .` refreshes it (no LLM cost).',\n\n  async inspect(ctx, deep): Promise<IntegrationReport> {\n    const loc = await locate(ctx, deep);\n    const projectSkill = await exists(path.join(ctx.root, '.claude', 'skills', 'graphify', 'SKILL.md'));\n    const userSkill = !projectSkill && (await exists(path.join(ctx.home, '.claude', 'skills', 'graphify', 'SKILL.md')));\n    const settings = (await readText(path.join(ctx.root, '.claude', 'settings.json'))) ?? '';\n    const hooks = /graphify\\s+hook-guard/.test(settings);\n    const graph = await exists(path.join(ctx.root, 'graphify-out', 'graph.json'));\n    const skillVersion = ((await readText(path.join(ctx.root, '.claude', 'skills', 'graphify', '.graphify_version'))) ?? '').trim() || null;\n\n    let version: string | null = null;\n    let runnable: boolean | null = null;\n    if (deep && loc.path) {\n      const r = await ctx.runner.run({ command: loc.path, args: ['--version'], timeoutMs: 15_000, signal: ctx.signal });\n      const m = /graphify\\s+(\\S+)/i.exec(r.stdout);\n      runnable = r.ok && !!m;\n      version = m?.[1] ?? null;\n    }\n\n    const checks: Check[] = [\n      { name: 'graphify executable', ok: !!loc.path, detail: loc.path ? (loc.onPath ? 'on PATH' : 'found, but not on PATH') : 'not found' },\n    ];\n    if (deep && loc.path) checks.push({ name: 'graphify --version', ok: !!runnable, detail: version ? `graphify ${version}` : 'did not run' });\n    checks.push({ name: 'Claude skill', ok: projectSkill || userSkill, detail: projectSkill ? 'project (.claude/skills/graphify)' : userSkill ? 'user (~/.claude/skills/graphify)' : 'missing' });\n    if (projectSkill && version && skillVersion) checks.push({ name: 'skill matches CLI version', ok: skillVersion === version, detail: `skill ${skillVersion}, CLI ${version}` });\n    const capabilities = { cli: !!loc.path, skill: projectSkill || userSkill, hooks, graphBuilt: graph };\n    const warnings: string[] = [];\n    const nextSteps: string[] = [];\n    if (!graph) warnings.push('No graph built yet. In Claude Code run `/graphify .` (graph building uses the model, so DevWorkspace does not do it).');\n\n    const base = { id: 'graphify', name: 'Graphify', required: true, deep, capabilities, checks } as const;\n    const scope = projectSkill ? 'project' : userSkill ? 'user' : null;\n\n    if (!loc.path && !projectSkill && !userSkill) {\n      nextSteps.push('devworkspace setup --integrations --yes');\n      return { ...base, status: 'NOT_INSTALLED', variant: null, scope: null, version: null, warnings, nextSteps };\n    }\n    if (!loc.path) {\n      warnings.push('The Claude skill/hooks exist but the graphify command is missing, so they cannot work.');\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'project skill without CLI', scope, version: null, warnings, nextSteps };\n    }\n    if (deep && runnable === false) {\n      warnings.push('The graphify executable was found but `graphify --version` failed.');\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'cli (not runnable)', scope, version, warnings, nextSteps };\n    }\n    if (!projectSkill && !userSkill) {\n      warnings.push('The graphify CLI is installed but its Claude skill is not set up for this project.');\n      nextSteps.push('devworkspace setup --integrations --yes   (runs `graphify install --project`)');\n      return { ...base, status: 'DEGRADED', variant: 'cli without project skill', scope: null, version, warnings, nextSteps };\n    }\n    if (version && skillVersion && compareVersions(version.replace(/[^0-9.]/g, '') || '0.0.0', skillVersion.replace(/[^0-9.]/g, '') || '0.0.0') !== 0) {\n      warnings.push(`The project skill is from graphify ${skillVersion} but the CLI is ${version}.`);\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'cli + stale project skill', scope, version, warnings, nextSteps };\n    }\n    if (hooks && !loc.onPath) {\n      warnings.push('Claude Code hooks call `graphify` by name, but it is not on PATH in this terminal, so the hooks would fail.');\n      nextSteps.push(...pathAdvice(ctx, loc.path ? path.dirname(loc.path) : null));\n      return { ...base, status: 'DEGRADED', variant: 'cli + project skill (PATH missing)', scope, version, warnings, nextSteps };\n    }\n    if (!loc.onPath) warnings.push(`graphify is installed but not on PATH. ${pathAdvice(ctx, path.dirname(loc.path))[0]}`);\n    return { ...base, status: deep ? 'VERIFIED' : 'INSTALLED', variant: 'cli + project skill', scope, version, warnings, nextSteps };\n  },\n\n  async plan(ctx, report): Promise<PlanResult> {\n    const protectPaths = ['CLAUDE.md', '.claude/CLAUDE.md', '.claude/settings.json', '.claude/settings.local.json', 'AGENTS.md'];\n    const blockers: string[] = [];\n    const notes: string[] = [];\n    const steps: PlanStep[] = [];\n    if (report.status === 'VERIFIED' && !ctx.setup.repair) return { steps, blockers, protectPaths, notes: ['already verified'] };\n\n    const loc = await locate(ctx, true);\n    const exeRef: { path: string | null } = { path: loc.path };\n    const scope = ctx.setup.scope;\n\n    if (!loc.path) {\n      const uv = await findTool(ctx.runner, 'uv', ctx.signal);\n      const pipx = await findTool(ctx.runner, 'pipx', ctx.signal);\n      const py = await findPython(ctx.runner, ctx.platform, ctx.signal);\n      const pyOk = !!py && compareVersions(py.version, MIN_PYTHON) >= 0;\n      const choice: { command: string[]; how: string } | null = uv\n        ? { command: [uv.command, 'tool', 'install', 'graphifyy'], how: 'uv tool install' }\n        : pipx\n          ? { command: [pipx.command, 'install', 'graphifyy'], how: 'pipx install' }\n          : pyOk && py\n            ? { command: [py.command, ...py.args, '-m', 'pip', 'install', '--user', 'graphifyy'], how: 'pip install --user' }\n            : null;\n      if (choice && !uv && !pipx) notes.push('uv and pipx were not found; falling back to the documented `pip install --user` (no administrator rights needed).');\n      if (!choice) {\n        if (py && !pyOk) blockers.push(`Python ${py.version} is too old; graphify needs Python 3.10 or newer.`);\n        blockers.push(\n          'No installer found. Graphify is a Python tool: install ONE of these, then re-run setup (nothing else is required):',\n          ctx.platform === 'win32'\n            ? '  - uv:     winget install --id astral-sh.uv        (or https://docs.astral.sh/uv/getting-started/installation/)'\n            : '  - uv:     https://docs.astral.sh/uv/getting-started/installation/',\n          '  - Python 3.10+ from https://www.python.org/downloads/ (the Microsoft Store \"python\" shortcut on Windows is not a real install)',\n          '  - pipx:   https://pipx.pypa.io/stable/installation/',\n        );\n        return { steps, blockers, protectPaths, notes };\n      }\n      const { command, how } = choice;\n      const [cmd, ...args] = command;\n      steps.push({\n        id: 'graphify:tool',\n        description: `Install the graphifyy package for your user account (${how}; no administrator rights, nothing system-wide)`,\n        command: command.map((c, i) => (i === 0 ? path.basename(c, path.extname(c)) : c)).join(' '),\n        level: 'machine',\n        async run(): Promise<StepOutcome> {\n          const r = await ctx.runner.run({ command: cmd!, args, cwd: ctx.root, timeoutMs: 600_000, signal: ctx.signal });\n          if (r.aborted) return { ok: false, detail: 'cancelled' };\n          if (r.timedOut) return { ok: false, detail: 'timed out after 10 minutes (network?)' };\n          if (!r.ok) {\n            const text = `${r.stderr}\\n${r.stdout}`;\n            if (/externally[- ]managed/i.test(text)) return { ok: false, detail: 'pip refuses to install into this Python (externally-managed environment). Install pipx or uv instead, then re-run.' };\n            if (/permission denied|access is denied|EACCES|WinError 5/i.test(text)) return { ok: false, detail: 'permission denied while installing. Run the command yourself from a terminal with the right permissions.' };\n            const tail = text.split(/\\r?\\n/).map((l) => l.trim()).filter(Boolean).slice(-3).join(' ');\n            return { ok: false, detail: (tail || r.error || `exit ${r.code}`).slice(0, 400) };\n          }\n          const found = await locate(ctx, true);\n          if (!found.path) return { ok: false, detail: 'graphifyy was installed but the graphify executable could not be located. Check the Scripts/bin folder of your Python tool.' };\n          exeRef.path = found.path;\n          return { ok: true, detail: found.onPath ? 'installed' : 'installed (not on PATH in this terminal)' };\n        },\n      });\n    }\n\n    steps.push({\n      id: 'graphify:project-skill',\n      description:\n        scope === 'user'\n          ? 'Install the Graphify skill for your user account (graphify install)'\n          : 'Install the Graphify project skill (graphify install --project): adds .claude/skills/graphify/, appends a graphify section to CLAUDE.md and registers Claude Code hooks in .claude/settings.json (existing content is preserved and verified)',\n      command: scope === 'user' ? 'graphify install' : 'graphify install --project',\n      level: scope === 'user' ? 'user-config' : 'project',\n      async run(): Promise<StepOutcome> {\n        if (!exeRef.path) return { ok: false, detail: 'the graphify executable is not available' };\n        const r = await ctx.runner.run({ command: exeRef.path, args: scope === 'user' ? ['install'] : ['install', '--project'], cwd: ctx.root, timeoutMs: 120_000, signal: ctx.signal });\n        if (r.aborted) return { ok: false, detail: 'cancelled' };\n        if (r.timedOut) return { ok: false, detail: 'timed out after 120 s' };\n        if (!r.ok) {\n          const tail = `${r.stderr}\\n${r.stdout}`.split(/\\r?\\n/).map((l) => l.trim()).filter(Boolean).slice(-3).join(' ');\n          return { ok: false, detail: (tail || r.error || `exit ${r.code}`).slice(0, 400) };\n        }\n        return { ok: true, detail: 'project skill installed', restartRequired: true, managedPaths: scope === 'user' ? [] : ['.claude/skills/graphify'] };\n      },\n    });\n    steps.push({\n      id: 'graphify:notice',\n      description: 'Record attribution in .devworkspace/THIRD_PARTY_NOTICES.md',\n      level: 'project',\n      async run(): Promise<StepOutcome> {\n        await writeThirdPartyNotice(ctx.root, GRAPHIFY_NOTICE);\n        return { ok: true };\n      },\n    });\n    return { steps, blockers, protectPaths, notes };\n  },\n};\n"]}
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{ promises as fs } from 'node:fs';\nimport path from 'node:path';\nimport { compareVersions, findPython, findTool } from '../exec.js';\nimport { GRAPHIFY_NOTICE, writeThirdPartyNotice } from '../notices.js';\nimport type { AdapterContext, Check, IntegrationAdapter, IntegrationReport, PlanResult, PlanStep, StepOutcome } from '../types.js';\nimport { pathExists } from '../../utils/fs.js';\nimport { persistentPathHas } from '../persistentPath.js';\n\n/**\n * Graphify. Verified against the published package (graphifyy 0.9.82) and its CLI help on 2026-10-09:\n *  - PyPI package `graphifyy`, executable `graphify`; README documents pip and pipx (pipx recommended on Windows)\n *  - `graphify --version` prints \"graphify <version>\"\n *  - `graphify install --project` writes .claude/skills/graphify/, appends a graphify section to CLAUDE.md,\n *    creates .claude/CLAUDE.md and registers PreToolUse hooks (`graphify hook-guard ...`) in .claude/settings.json.\n *    It merges and is idempotent, but it does change files the user owns, so every run is snapshotted and verified.\n * uv is not mentioned in the README; `uv tool install` is used because it is the equivalent of pipx for console tools.\n */\n\nconst MIN_PYTHON = '3.10.0';\n\ninterface Located {\n  path: string | null;\n  onPath: boolean;\n}\n\nasync function exists(p: string): Promise<boolean> {\n  return pathExists(p);\n}\n\nasync function locate(ctx: AdapterContext, deep: boolean): Promise<Located> {\n  const onPath = await ctx.runner.which('graphify');\n  if (onPath) return { path: onPath, onPath: true };\n  const dirs = [path.join(ctx.home, '.local', 'bin')];\n  if (deep) dirs.push(...(await toolBinDirs(ctx)));\n  for (const d of dirs) {\n    const candidate = path.join(d, ctx.platform === 'win32' ? 'graphify.exe' : 'graphify');\n    if (await exists(candidate)) return { path: candidate, onPath: false };\n  }\n  return { path: null, onPath: false };\n}\n\n/** Where uv, pipx and `pip --user` put console scripts, asked from the tools themselves (they differ by OS and version). */\nasync function toolBinDirs(ctx: AdapterContext): Promise<string[]> {\n  const out: string[] = [];\n  const uv = await findTool(ctx.runner, 'uv', ctx.signal);\n  if (uv) {\n    const r = await ctx.runner.run({ command: uv.command, args: ['tool', 'dir', '--bin'], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  const pipx = await findTool(ctx.runner, 'pipx', ctx.signal);\n  if (pipx) {\n    const r = await ctx.runner.run({ command: pipx.command, args: ['environment', '--value', 'PIPX_BIN_DIR'], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  const py = await findPython(ctx.runner, ctx.platform, ctx.signal);\n  if (py) {\n    const code = \"import sysconfig,os;print(sysconfig.get_path('scripts', os.name + '_user'))\";\n    const r = await ctx.runner.run({ command: py.command, args: [...py.args, '-c', code], timeoutMs: 10_000, signal: ctx.signal });\n    if (r.ok && r.stdout.trim()) out.push(r.stdout.trim().split(/\\r?\\n/)[0]!);\n  }\n  return out;\n}\n\nasync function readText(p: string): Promise<string | null> {\n  try {\n    return await fs.readFile(p, 'utf8');\n  } catch {\n    return null;\n  }\n}\n\nfunction pathAdvice(ctx: AdapterContext, dir: string | null): string[] {\n  const where = dir ? `Add ${dir} to your PATH` : 'Add the folder containing graphify to your PATH';\n  return ctx.platform === 'win32'\n    ? [`${where} (Settings > System > About > Advanced system settings > Environment Variables), or run \\`pipx ensurepath\\` / \\`uv tool update-shell\\`, then open a new terminal.`]\n    : [`${where}, or run \\`pipx ensurepath\\` / \\`uv tool update-shell\\`, then open a new terminal.`];\n}\n\ninterface PathDiagnosis {\n  /** The folder is on the PATH new processes get, but this process started before that was set. */\n  staleSession: boolean;\n  /** Short, accurate description of the situation for the user. */\n  explanation: string;\n  nextSteps: string[];\n}\n\n/**\n * Why is graphify not on this process's PATH? On Windows the registry tells us whether the folder is already on the\n * persistent PATH (then a restart is the fix and adding it again would be wrong advice) or genuinely missing from it.\n * Elsewhere, or when the registry cannot be read, the persistent PATH is unknown and the general advice is kept.\n * Only called for deep inspections; quick checks never spawn a process.\n */\nasync function diagnoseMissingPath(ctx: AdapterContext, dir: string): Promise<PathDiagnosis> {\n  const persistent = await ctx.persistentPath();\n  const where = persistent ? persistentPathHas(persistent, dir) : null;\n  if (persistent && where) {\n    return {\n      staleSession: true,\n      explanation: `graphify is on your ${where} PATH (${dir}), but this terminal or editor started before that was set, so processes launched from it (including Claude Code hooks) still cannot find it.`,\n      nextSteps: ['Close and reopen your terminal, or restart VS Code (and Claude Code), so it inherits the updated PATH. No change to PATH is needed. Then run: devworkspace doctor'],\n    };\n  }\n  if (persistent) {\n    return {\n      staleSession: false,\n      explanation: `graphify is not on your PATH: ${dir} is missing from this terminal's PATH and from your persistent user and machine PATH.`,\n      nextSteps: pathAdvice(ctx, dir),\n    };\n  }\n  return {\n    staleSession: false,\n    explanation: 'graphify is not on this terminal\\'s PATH.',\n    nextSteps: [...pathAdvice(ctx, dir), 'If you already added it, restart the terminal or editor so it picks up the change.'],\n  };\n}\n\nexport const graphify: IntegrationAdapter = {\n  id: 'graphify',\n  name: 'Graphify',\n  required: true,\n  docsUrl: 'https://github.com/Graphify-Labs/graphify',\n  usage:\n    'For \"where is X / what depends on Y\" questions, query the Graphify graph first (graphify query \"<question>\", graphify path \"<A>\" \"<B>\", graphify explain \"<concept>\") ' +\n    'or use the /graphify skill. The graph is a navigation aid, not a source of truth: confirm in the actual files before relying on it. After editing code, `graphify update .` refreshes it (no LLM cost).',\n\n  async inspect(ctx, deep): Promise<IntegrationReport> {\n    const loc = await locate(ctx, deep);\n    const projectSkill = await exists(path.join(ctx.root, '.claude', 'skills', 'graphify', 'SKILL.md'));\n    const userSkill = !projectSkill && (await exists(path.join(ctx.home, '.claude', 'skills', 'graphify', 'SKILL.md')));\n    const settings = (await readText(path.join(ctx.root, '.claude', 'settings.json'))) ?? '';\n    const hooks = /graphify\\s+hook-guard/.test(settings);\n    const graph = await exists(path.join(ctx.root, 'graphify-out', 'graph.json'));\n    const skillVersion = ((await readText(path.join(ctx.root, '.claude', 'skills', 'graphify', '.graphify_version'))) ?? '').trim() || null;\n\n    let version: string | null = null;\n    let runnable: boolean | null = null;\n    if (deep && loc.path) {\n      const r = await ctx.runner.run({ command: loc.path, args: ['--version'], timeoutMs: 15_000, signal: ctx.signal });\n      const m = /graphify\\s+(\\S+)/i.exec(r.stdout);\n      runnable = r.ok && !!m;\n      version = m?.[1] ?? null;\n    }\n\n    const checks: Check[] = [\n      { name: 'graphify executable', ok: !!loc.path, detail: loc.path ? (loc.onPath ? 'on PATH' : 'found, but not on PATH') : 'not found' },\n    ];\n    if (deep && loc.path) checks.push({ name: 'graphify --version', ok: !!runnable, detail: version ? `graphify ${version}` : 'did not run' });\n    checks.push({ name: 'Claude skill', ok: projectSkill || userSkill, detail: projectSkill ? 'project (.claude/skills/graphify)' : userSkill ? 'user (~/.claude/skills/graphify)' : 'missing' });\n    if (projectSkill && version && skillVersion) checks.push({ name: 'skill matches CLI version', ok: skillVersion === version, detail: `skill ${skillVersion}, CLI ${version}` });\n    const capabilities = { cli: !!loc.path, skill: projectSkill || userSkill, hooks, graphBuilt: graph };\n    const warnings: string[] = [];\n    const nextSteps: string[] = [];\n    if (!graph) warnings.push('No graph built yet. In Claude Code run `/graphify .` (graph building uses the model, so DevWorkspace does not do it).');\n\n    const base = { id: 'graphify', name: 'Graphify', required: true, deep, capabilities, checks } as const;\n    const scope = projectSkill ? 'project' : userSkill ? 'user' : null;\n\n    if (!loc.path && !projectSkill && !userSkill) {\n      nextSteps.push('devworkspace setup --integrations --yes');\n      return { ...base, status: 'NOT_INSTALLED', variant: null, scope: null, version: null, warnings, nextSteps };\n    }\n    if (!loc.path) {\n      warnings.push('The Claude skill/hooks exist but the graphify command is missing, so they cannot work.');\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'project skill without CLI', scope, version: null, warnings, nextSteps };\n    }\n    if (deep && runnable === false) {\n      warnings.push('The graphify executable was found but `graphify --version` failed.');\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'cli (not runnable)', scope, version, warnings, nextSteps };\n    }\n    if (!projectSkill && !userSkill) {\n      warnings.push('The graphify CLI is installed but its Claude skill is not set up for this project.');\n      nextSteps.push('devworkspace setup --integrations --yes   (runs `graphify install --project`)');\n      return { ...base, status: 'DEGRADED', variant: 'cli without project skill', scope: null, version, warnings, nextSteps };\n    }\n    if (version && skillVersion && compareVersions(version.replace(/[^0-9.]/g, '') || '0.0.0', skillVersion.replace(/[^0-9.]/g, '') || '0.0.0') !== 0) {\n      warnings.push(`The project skill is from graphify ${skillVersion} but the CLI is ${version}.`);\n      nextSteps.push('devworkspace integrations repair --yes');\n      return { ...base, status: 'DEGRADED', variant: 'cli + stale project skill', scope, version, warnings, nextSteps };\n    }\n    if (!loc.onPath) {\n      const dir = path.dirname(loc.path);\n      // Only a deep inspection may ask the registry; a quick check keeps the general advice.\n      const diag: PathDiagnosis = deep\n        ? await diagnoseMissingPath(ctx, dir)\n        : { staleSession: false, explanation: 'graphify is not on this terminal\\'s PATH.', nextSteps: pathAdvice(ctx, dir) };\n      if (hooks) {\n        warnings.push(`Claude Code hooks call \\`graphify\\` by name, so they fail until it is found. ${diag.explanation}`);\n        nextSteps.push(...diag.nextSteps);\n        return diag.staleSession\n          ? { ...base, status: 'RESTART_REQUIRED', variant: 'cli + project skill (restart terminal)', scope, version, warnings, nextSteps }\n          : { ...base, status: 'DEGRADED', variant: 'cli + project skill (PATH missing)', scope, version, warnings, nextSteps };\n      }\n      warnings.push(diag.explanation);\n      nextSteps.push(...diag.nextSteps);\n    }\n    return { ...base, status: deep ? 'VERIFIED' : 'INSTALLED', variant: 'cli + project skill', scope, version, warnings, nextSteps };\n  },\n\n  async plan(ctx, report): Promise<PlanResult> {\n    const protectPaths = ['CLAUDE.md', '.claude/CLAUDE.md', '.claude/settings.json', '.claude/settings.local.json', 'AGENTS.md'];\n    const blockers: string[] = [];\n    const notes: string[] = [];\n    const steps: PlanStep[] = [];\n    if (report.status === 'VERIFIED' && !ctx.setup.repair) return { steps, blockers, protectPaths, notes: ['already verified'] };\n\n    const loc = await locate(ctx, true);\n    const exeRef: { path: string | null } = { path: loc.path };\n    const scope = ctx.setup.scope;\n\n    if (!loc.path) {\n      const uv = await findTool(ctx.runner, 'uv', ctx.signal);\n      const pipx = await findTool(ctx.runner, 'pipx', ctx.signal);\n      const py = await findPython(ctx.runner, ctx.platform, ctx.signal);\n      const pyOk = !!py && compareVersions(py.version, MIN_PYTHON) >= 0;\n      const choice: { command: string[]; how: string } | null = uv\n        ? { command: [uv.command, 'tool', 'install', 'graphifyy'], how: 'uv tool install' }\n        : pipx\n          ? { command: [pipx.command, 'install', 'graphifyy'], how: 'pipx install' }\n          : pyOk && py\n            ? { command: [py.command, ...py.args, '-m', 'pip', 'install', '--user', 'graphifyy'], how: 'pip install --user' }\n            : null;\n      if (choice && !uv && !pipx) notes.push('uv and pipx were not found; falling back to the documented `pip install --user` (no administrator rights needed).');\n      if (!choice) {\n        if (py && !pyOk) blockers.push(`Python ${py.version} is too old; graphify needs Python 3.10 or newer.`);\n        blockers.push(\n          'No installer found. Graphify is a Python tool: install ONE of these, then re-run setup (nothing else is required):',\n          ctx.platform === 'win32'\n            ? '  - uv:     winget install --id astral-sh.uv        (or https://docs.astral.sh/uv/getting-started/installation/)'\n            : '  - uv:     https://docs.astral.sh/uv/getting-started/installation/',\n          '  - Python 3.10+ from https://www.python.org/downloads/ (the Microsoft Store \"python\" shortcut on Windows is not a real install)',\n          '  - pipx:   https://pipx.pypa.io/stable/installation/',\n        );\n        return { steps, blockers, protectPaths, notes };\n      }\n      const { command, how } = choice;\n      const [cmd, ...args] = command;\n      steps.push({\n        id: 'graphify:tool',\n        description: `Install the graphifyy package for your user account (${how}; no administrator rights, nothing system-wide)`,\n        command: command.map((c, i) => (i === 0 ? path.basename(c, path.extname(c)) : c)).join(' '),\n        level: 'machine',\n        async run(): Promise<StepOutcome> {\n          const r = await ctx.runner.run({ command: cmd!, args, cwd: ctx.root, timeoutMs: 600_000, signal: ctx.signal });\n          if (r.aborted) return { ok: false, detail: 'cancelled' };\n          if (r.timedOut) return { ok: false, detail: 'timed out after 10 minutes (network?)' };\n          if (!r.ok) {\n            const text = `${r.stderr}\\n${r.stdout}`;\n            if (/externally[- ]managed/i.test(text)) return { ok: false, detail: 'pip refuses to install into this Python (externally-managed environment). Install pipx or uv instead, then re-run.' };\n            if (/permission denied|access is denied|EACCES|WinError 5/i.test(text)) return { ok: false, detail: 'permission denied while installing. Run the command yourself from a terminal with the right permissions.' };\n            const tail = text.split(/\\r?\\n/).map((l) => l.trim()).filter(Boolean).slice(-3).join(' ');\n            return { ok: false, detail: (tail || r.error || `exit ${r.code}`).slice(0, 400) };\n          }\n          const found = await locate(ctx, true);\n          if (!found.path) return { ok: false, detail: 'graphifyy was installed but the graphify executable could not be located. Check the Scripts/bin folder of your Python tool.' };\n          exeRef.path = found.path;\n          return { ok: true, detail: found.onPath ? 'installed' : 'installed (not on PATH in this terminal)' };\n        },\n      });\n    }\n\n    steps.push({\n      id: 'graphify:project-skill',\n      description:\n        scope === 'user'\n          ? 'Install the Graphify skill for your user account (graphify install)'\n          : 'Install the Graphify project skill (graphify install --project): adds .claude/skills/graphify/, appends a graphify section to CLAUDE.md and registers Claude Code hooks in .claude/settings.json (existing content is preserved and verified)',\n      command: scope === 'user' ? 'graphify install' : 'graphify install --project',\n      level: scope === 'user' ? 'user-config' : 'project',\n      async run(): Promise<StepOutcome> {\n        if (!exeRef.path) return { ok: false, detail: 'the graphify executable is not available' };\n        const r = await ctx.runner.run({ command: exeRef.path, args: scope === 'user' ? ['install'] : ['install', '--project'], cwd: ctx.root, timeoutMs: 120_000, signal: ctx.signal });\n        if (r.aborted) return { ok: false, detail: 'cancelled' };\n        if (r.timedOut) return { ok: false, detail: 'timed out after 120 s' };\n        if (!r.ok) {\n          const tail = `${r.stderr}\\n${r.stdout}`.split(/\\r?\\n/).map((l) => l.trim()).filter(Boolean).slice(-3).join(' ');\n          return { ok: false, detail: (tail || r.error || `exit ${r.code}`).slice(0, 400) };\n        }\n        return { ok: true, detail: 'project skill installed', restartRequired: true, managedPaths: scope === 'user' ? [] : ['.claude/skills/graphify'] };\n      },\n    });\n    steps.push({\n      id: 'graphify:notice',\n      description: 'Record attribution in .devworkspace/THIRD_PARTY_NOTICES.md',\n      level: 'project',\n      async run(): Promise<StepOutcome> {\n        await writeThirdPartyNotice(ctx.root, GRAPHIFY_NOTICE);\n        return { ok: true };\n      },\n    });\n    return { steps, blockers, protectPaths, notes };\n  },\n};\n"]}

package/dist/integrations/manager.js

@@ -8,6 +8,7 @@ import { graphify } from './adapters/graphify.js';
 import { omniroute } from './adapters/omniroute.js';
 import { ponytail } from './adapters/ponytail.js';
 import { createRunner } from './exec.js';
+import { readPersistentPath } from './persistentPath.js';
 import { restoreSnapshot, takeSnapshot, verifySnapshot } from './protect.js';
 import { blankEntry, loadIntegrationsState, saveIntegrationEntry, wasInterrupted } from './state.js';
 import { REQUIRED_INTEGRATIONS, } from './types.js';
@@ -33,7 +34,19 @@ function resolveEnv(m) {
     };
 }
 function ctxFor(m, setup, prior, report, signal) {
-    return { root: m.root, home: m.home, env: m.env, platform: m.platform, runner: m.runner, setup, prior, report, signal };
+    let persistent;
+    return {
+        root: m.root,
+        home: m.home,
+        env: m.env,
+        platform: m.platform,
+        runner: m.runner,
+        setup,
+        signal,
+        prior,
+        report,
+        persistentPath: () => (persistent ??= readPersistentPath(m.runner, m.platform, m.env, signal)),
+    };
 }
 const DEFAULT_SETUP = { scope: 'project', yes: false, dryRun: false, repair: false };
 /** Combine what was observed with what earlier runs recorded. Records can only add warnings or RESTART_REQUIRED, never VERIFIED. */