devsmind-mcp 2.2.2 → 2.3.0

package/dist/cli/rule.js.map

@@ -1 +1 @@
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+{"version":3,"file":"rule.js","sourceRoot":"","sources":["../../src/cli/rule.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAoBA,8BAiGC;AAyBD,gCAqFC;AAnOD,uCAAyB;AACzB,2CAA6B;AAC7B,4CAAmE;AACnE,kDAS+B;AAC/B,sDAA0E;AAC1E,8CAAwD;AAExD;;;GAGG;AACH,SAAgB,SAAS,CAAC,MAAqB,EAAE,UAAkB;IACjE,MAAM,WAAW,GAAG,MAAM,CAAC,YAAY,CAAC;IACxC,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC;IACzB,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IAC3B,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC;IAC/B,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IAE3B,MAAM,SAAS,GAAG,KAAK;SACpB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,eAAe,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,aAAa,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,UAAU,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC;SACrG,IAAI,CAAC,IAAI,CAAC,CAAC;IAEd,MAAM,QAAQ,GAAG,IAAI;QACnB,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,UAAU,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;QACpE,CAAC,CAAC,eAAe,CAAC;IAEpB,MAAM,OAAO,GAAG,MAAM,CAAC,uBAAuB,IAAI,EAAE,CAAC;IACrD,MAAM,cAAc,GAAG,UAAU,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IAEtD,MAAM,EAAE,GAAG,GAAG,CAAC;IAEf,MAAM,KAAK,GAAG;QACZ,wBAAwB;QACxB,EAAE;QACF,qBAAqB,EAAE,GAAG,cAAc,GAAG,EAAE,EAAE;QAC/C,gBAAgB,WAAW,gBAAgB,IAAI,gBAAgB,QAAQ,2BAA2B,OAAO,KAAK;QAC9G,cAAc,SAAS,EAAE;QACzB,KAAK,CAAC,CAAC,CAAC,cAAc,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE;QAClC,EAAE;QACF,kBAAkB;QAClB,EAAE;QACF,qIAAqI,EAAE,iBAAiB,EAAE,+EAA+E,EAAE,mBAAmB,EAAE,+KAA+K;QAC/a,EAAE;QACF,mBAAmB;QACnB,EAAE;QACF,sBAAsB;QACtB,sBAAsB;QACtB,kEAAkE,EAAE,eAAe,EAAE,2FAA2F;QAChL,4DAA4D,EAAE,aAAa,EAAE,IAAI;QACjF,2CAA2C,EAAE,gBAAgB,EAAE,iDAAiD;QAChH,+CAA+C,EAAE,iBAAiB,EAAE,IAAI,EAAE,kBAAkB,EAAE,MAAM,EAAE,oBAAoB,EAAE,8BAA8B,EAAE,gBAAgB,EAAE,iBAAiB;QAC/L,0CAA0C,EAAE,iBAAiB,EAAE,IAAI,EAAE,iBAAiB,EAAE,mBAAmB;QAC3G,qCAAqC,EAAE,mBAAmB,EAAE,UAAU;QACtE,8CAA8C,EAAE,eAAe,EAAE,6CAA6C;QAC9G,mFAAmF,EAAE,iBAAiB,EAAE,IAAI;QAC5G,8BAA8B,EAAE,cAAc,EAAE,IAAI;QACpD,8BAA8B,EAAE,iBAAiB,EAAE,+CAA+C;QAClG,EAAE;QACF,gEAAgE;QAChE,EAAE;QACF,GAAG,EAAE,eAAe,EAAE,yBAAyB,KAAK,CAAC,IAAI,CAAC,8BAAoB,CAAC,CAAC,IAAI,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,qDAAqD;QACtJ,EAAE;QACF,WAAW,EAAE,eAAe,EAAE,wIAAwI,EAAE,UAAU,EAAE,KAAK,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,KAAK,EAAE,YAAY,EAAE,oCAAoC,EAAE,iBAAiB,EAAE,yBAAyB;QACzU,WAAW,EAAE,iBAAiB,EAAE,oPAAoP;QACpR,8GAA8G;QAC9G,EAAE;QACF,iBAAiB;QACjB,EAAE;QACF,gDAAgD,EAAE,cAAc,EAAE,MAAM,EAAE,mBAAmB,EAAE,MAAM,EAAE,iBAAiB,EAAE,MAAM,EAAE,iBAAiB,EAAE,iDAAiD;QACtM,wHAAwH;QACxH,0BAA0B,EAAE,gBAAgB,EAAE,cAAc,EAAE,yBAAyB,EAAE,wBAAwB,EAAE,eAAe,EAAE,IAAI,EAAE,iBAAiB,EAAE,KAAK,EAAE,kBAAkB,EAAE,yEAAyE,EAAE,cAAc,EAAE,OAAO,EAAE,iBAAiB,EAAE,GAAG;QAClT,sCAAsC,EAAE,gBAAgB,EAAE,wDAAwD,EAAE,kBAAkB,EAAE,MAAM,EAAE,uBAAuB,EAAE,4DAA4D,EAAE,iBAAiB,EAAE,iDAAiD,EAAE,oBAAoB,EAAE,6FAA6F,EAAE,gBAAgB,EAAE,SAAS;QAC7b,EAAE;QACF,qBAAqB;QACrB,EAAE;QACF,qBAAqB;QACrB,qBAAqB;QACrB,KAAK,EAAE,eAAe,EAAE,+HAA+H;QACvJ,KAAK,EAAE,aAAa,EAAE,4EAA4E;QAClG,KAAK,EAAE,mBAAmB,EAAE,oEAAoE;QAChG,KAAK,EAAE,gBAAgB,EAAE,iGAAiG;QAC1H,KAAK,EAAE,iBAAiB,EAAE,8CAA8C,EAAE,kBAAkB,EAAE,MAAM,EAAE,oBAAoB,EAAE,mEAAmE;QAC/L,KAAK,EAAE,mBAAmB,EAAE,4DAA4D;QACxF,KAAK,EAAE,eAAe,EAAE,6FAA6F;QACrH,KAAK,EAAE,iBAAiB,EAAE,4FAA4F;QACtH,KAAK,EAAE,cAAc,EAAE,8DAA8D;QACrF,KAAK,EAAE,iBAAiB,EAAE,sEAAsE;QAChG,KAAK,EAAE,qBAAqB,EAAE,iEAAiE;QAC/F,KAAK,EAAE,yBAAyB,EAAE,uDAAuD;QACzF,KAAK,EAAE,6BAA6B,EAAE,4DAA4D;QAClG,KAAK,EAAE,mBAAmB,EAAE,kEAAkE;QAC9F,KAAK,EAAE,qBAAqB,EAAE,iEAAiE;QAC/F,KAAK,EAAE,gBAAgB,EAAE,sEAAsE;QAC/F,KAAK,EAAE,gBAAgB,EAAE,+GAA+G,EAAE,WAAW,EAAE,iCAAiC;QACxL,KAAK,EAAE,qBAAqB,EAAE,6DAA6D;QAC3F,KAAK,EAAE,gBAAgB,EAAE,uGAAuG;QAChI,KAAK,EAAE,kBAAkB,EAAE,iEAAiE;QAC5F,KAAK,EAAE,oBAAoB,EAAE,qEAAqE;QAClG,KAAK,EAAE,iBAAiB,EAAE,MAAM,EAAE,kBAAkB,EAAE,wDAAwD;QAC9G,KAAK,EAAE,uBAAuB,EAAE,yFAAyF;QACzH,KAAK,EAAE,wBAAwB,EAAE,0EAA0E;QAC3G,KAAK,EAAE,4BAA4B,EAAE,kEAAkE,EAAE,oBAAoB,EAAE,IAAI;QACnI,KAAK,EAAE,kBAAkB,EAAE,4EAA4E;QACvG,EAAE;QACF,0EAA0E;KAC3E,CAAC;IAEF,OAAO,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAClD,CAAC;AAED,SAAS,eAAe,CAAC,IAAY,EAAE,WAAmB,EAAE,GAAY;IACtE,MAAM,OAAO,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;IAC/B,OAAO,CAAC,GAAG,CAAC,KAAK,OAAO,EAAE,CAAC,CAAC;IAC5B,OAAO,CAAC,GAAG,CAAC,+BAA+B,WAAW,GAAG,CAAC,CAAC;IAC3D,OAAO,CAAC,GAAG,CAAC,yDAAyD,CAAC,CAAC;IACvE,OAAO,CAAC,GAAG,CAAC,GAAG,OAAO,IAAI,CAAC,CAAC;IAC5B,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IAClB,OAAO,CAAC,GAAG,CAAC,KAAK,OAAO,EAAE,CAAC,CAAC;IAC5B,IAAI,GAAG,EAAE,CAAC;QACR,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IACnB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,gEAAgE,CAAC,CAAC;QAC9E,OAAO,CAAC,GAAG,CAAC,oEAAoE,CAAC,CAAC;IACpF,CAAC;IACD,OAAO,CAAC,GAAG,CAAC,GAAG,OAAO,IAAI,CAAC,CAAC;AAC9B,CAAC;AAED;;;;;GAKG;AACI,KAAK,UAAU,UAAU,CAAC,IAAwC;IACvE,MAAM,UAAU,GAAG,IAAA,0BAAiB,EAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAEhD,IAAI,CAAC,UAAU,EAAE,CAAC;QAChB,OAAO,CAAC,KAAK,CACX,kCAAkC;YAClC,4EAA4E,CAC7E,CAAC;QACF,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,aAAa,CAAC,CAAC;IACxD,IAAI,MAAqB,CAAC;IAC1B,IAAI,CAAC;QACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,OAAO,CAAC,CAAkB,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package/dist/cli/sync.d.ts

@@ -7,7 +7,14 @@
  * trigger a sync, and the DB's constructor-time `syncFromDisk()` only runs once
  * per process. So after a `git pull` the committed graph changes never reach the
  * local DB without a restart. This command applies them on demand.
+ *
+ * `--analyze` (optionally with `--fix`) runs `devsmind analyze` immediately after,
+ * on the same connection — the natural place to catch drift a teammate's changes
+ * introduced, right when you pull them in.
  */
 export declare function handleSync(opts: {
     path?: string;
+    analyze?: boolean;
+    fix?: boolean;
+    godEntityThreshold?: string;
 }): Promise<void>;

package/dist/cli/sync.js

@@ -42,6 +42,8 @@ const path = __importStar(require("path"));
 const better_sqlite3_1 = __importDefault(require("better-sqlite3"));
 const config_1 = require("../utils/config");
 const database_1 = require("../db/database");
+const analyze_1 = require("../db/analyze");
+const analyze_2 = require("./analyze");
 /**
  * `devsmind sync` — force the on-disk graph (`graph/**`) and history
  * (`history/*.json`) into the local `brain.db`.
@@ -51,6 +53,10 @@ const database_1 = require("../db/database");
  * trigger a sync, and the DB's constructor-time `syncFromDisk()` only runs once
  * per process. So after a `git pull` the committed graph changes never reach the
  * local DB without a restart. This command applies them on demand.
+ *
+ * `--analyze` (optionally with `--fix`) runs `devsmind analyze` immediately after,
+ * on the same connection — the natural place to catch drift a teammate's changes
+ * introduced, right when you pull them in.
  */
 async function handleSync(opts) {
     const devmindDir = (0, config_1.resolveDevmindDir)(opts.path);
@@ -65,12 +71,20 @@ async function handleSync(opts) {
     // Read the pre-sync counts straight from the existing brain.db file (if any),
     // BEFORE DevMindDatabase's constructor runs syncFromDisk(). This lets us show
     // an honest delta of what the sync actually pulled in.
-    const before = readRawCounts(dbPath);
+    let before;
+    try {
+        before = readRawCounts(dbPath);
+    }
+    catch (err) {
+        console.error(`\n❌ ${err.message}`);
+        process.exit(1);
+    }
     // Constructing the DB runs syncFromDisk() once; we call it again explicitly so
     // the behaviour is obvious and robust even if the constructor changes later.
     const db = new database_1.DevMindDatabase(dbPath);
     try {
         db.syncFromDisk();
+        db.syncToDisk();
         const after = db.getCounts();
         const delta = (a, b) => {
             const d = b - a;
@@ -80,12 +94,24 @@ async function handleSync(opts) {
         console.log(`   Nodes       : ${after.nodes}${delta(before.nodes, after.nodes)}`);
         console.log(`   Connections : ${after.connections}${delta(before.connections, after.connections)}`);
         console.log(`   History     : ${after.history}${delta(before.history, after.history)}\n`);
+        if (opts.analyze) {
+            const godEntityThreshold = opts.godEntityThreshold ? parseInt(opts.godEntityThreshold, 10) : undefined;
+            console.log(`🩺 Running analyze${opts.fix ? ' (--fix)' : ''}...`);
+            const report = (0, analyze_1.runAnalysis)(db, path.dirname(devmindDir), { fix: opts.fix === true, godEntityThreshold });
+            (0, analyze_2.printReport)(report);
+        }
     }
     finally {
         db.close();
     }
 }
-/** Count rows in an existing brain.db without triggering a sync. Missing file or tables → zeros. */
+/**
+ * Count rows in an existing brain.db without triggering a sync. A missing file is a
+ * legitimate zero (first-ever sync). A file that exists but fails to OPEN (corrupt/
+ * truncated SQLite) is NOT a legitimate zero — that would print a misleading "+500"
+ * delta as if the DB were simply empty, masking real corruption. Per-table read
+ * failures (e.g. a table missing on an older schema) still fall back to 0.
+ */
 function readRawCounts(dbPath) {
     const zero = { nodes: 0, connections: 0, history: 0 };
     if (!fs.existsSync(dbPath))
@@ -93,6 +119,17 @@ function readRawCounts(dbPath) {
     let raw = null;
     try {
         raw = new better_sqlite3_1.default(dbPath, { readonly: true });
+        // better-sqlite3 opens lazily — a garbage/truncated file doesn't throw until the
+        // first real read, so force one here to detect corruption up front rather than
+        // letting per-table reads below silently swallow it into a misleading zero.
+        raw.prepare('SELECT 1').get();
+    }
+    catch (err) {
+        if (raw)
+            raw.close();
+        throw new Error(`brain.db exists but could not be read (${err.message}) — it may be corrupted. Investigate before syncing, or remove it to start fresh.`);
+    }
+    try {
         const one = (sql) => {
             try {
                 const row = raw.prepare(sql).get();
@@ -108,12 +145,8 @@ function readRawCounts(dbPath) {
             history: one('SELECT COUNT(*) AS c FROM history'),
         };
     }
-    catch {
-        return zero;
-    }
     finally {
-        if (raw)
-            raw.close();
+        raw.close();
     }
 }
 //# sourceMappingURL=sync.js.map

package/dist/cli/sync.js.map

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package/dist/cli/workflow.d.ts

@@ -0,0 +1,8 @@
+/** `devsmind workflow` — interactive list/view/pause/resume. Day-to-day creation and step-recording happens through the MCP tools the agent calls, not this command. */
+export declare function handleWorkflow(opts: {
+    path?: string;
+}): Promise<void>;
+/** `devsmind workflow import <path>` — imports a folder of .md flow docs, or a single file, as paused workflows. */
+export declare function handleWorkflowImport(pathArg: string, opts: {
+    path?: string;
+}): Promise<void>;

package/dist/cli/workflow.js

@@ -0,0 +1,156 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.handleWorkflow = handleWorkflow;
+exports.handleWorkflowImport = handleWorkflowImport;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const prompts_1 = __importDefault(require("prompts"));
+const config_1 = require("../utils/config");
+const database_1 = require("../db/database");
+const workflow_import_1 = require("../db/workflow-import");
+function openDb(pathOpt) {
+    const devmindDir = (0, config_1.resolveDevmindDir)(pathOpt);
+    if (!devmindDir) {
+        console.error(`❌ No .devmind directory found.\n` +
+            `   Run from inside a DevsMind brain folder, or pass --path <devmind_path>.`);
+        process.exit(1);
+    }
+    return { db: new database_1.DevMindDatabase(path.join(devmindDir, 'brain.db')), devmindDir };
+}
+/** `devsmind workflow` — interactive list/view/pause/resume. Day-to-day creation and step-recording happens through the MCP tools the agent calls, not this command. */
+async function handleWorkflow(opts) {
+    const { db } = openDb(opts.path);
+    try {
+        await runWorkflowLoop(db);
+    }
+    finally {
+        db.close();
+    }
+}
+async function runWorkflowLoop(db) {
+    while (true) {
+        const workflows = db.listWorkflows();
+        if (workflows.length === 0) {
+            console.log('📝 No workflows yet. Create one via the workflow_create MCP tool, or import existing docs with `devsmind workflow import <path>`.');
+            return;
+        }
+        const statusEmoji = { active: '🟢', paused: '⏸️', completed: '✅' };
+        const choices = workflows.map(w => ({
+            title: `${statusEmoji[w.status] || ''} [${w.status}] ${w.name}`,
+            value: w.id
+        }));
+        choices.push({ title: '🚪 Exit', value: 'exit' });
+        const response = await (0, prompts_1.default)({
+            type: 'select',
+            name: 'id',
+            message: `Workflows (${workflows.length}):`,
+            choices
+        });
+        if (!response.id || response.id === 'exit') {
+            console.log('🚪 Goodbye!');
+            break;
+        }
+        await showWorkflowMenu(db, response.id);
+    }
+}
+async function showWorkflowMenu(db, id) {
+    while (true) {
+        let workflow;
+        let steps, artifacts;
+        try {
+            ({ workflow, steps, artifacts } = db.getWorkflowContext(id));
+        }
+        catch {
+            return;
+        }
+        console.log(`\n==================================================`);
+        console.log(`📋 ${workflow.name}  [${workflow.status}]`);
+        console.log(`==================================================`);
+        console.log(workflow.description);
+        console.log(`\nSteps (${steps.length}):`);
+        for (const s of steps) {
+            console.log(`  ${s.step_index}. ${s.summary}${s.pending_tasks ? `  (pending: ${s.pending_tasks})` : ''}`);
+        }
+        console.log(`\nArtifacts (${artifacts.length}):`);
+        for (const a of artifacts) {
+            console.log(`  - [${a.type}] ${a.source_name} → ${a.file_path.replace(/\\/g, '/')}`);
+        }
+        const choices = [];
+        if (workflow.status !== 'active')
+            choices.push({ title: '▶️ Resume (make active)', value: 'resume' });
+        if (workflow.status === 'active')
+            choices.push({ title: '⏸️ Pause', value: 'pause' });
+        if (workflow.status !== 'completed')
+            choices.push({ title: '✅ Mark completed', value: 'complete' });
+        choices.push({ title: '⬅️ Back to list', value: 'back' });
+        const response = await (0, prompts_1.default)({ type: 'select', name: 'action', message: 'Action:', choices });
+        if (!response.action || response.action === 'back')
+            return;
+        if (response.action === 'resume')
+            db.resumeWorkflow(id);
+        if (response.action === 'pause')
+            db.pauseWorkflow();
+        if (response.action === 'complete')
+            db.completeWorkflow(id);
+    }
+}
+/** `devsmind workflow import <path>` — imports a folder of .md flow docs, or a single file, as paused workflows. */
+async function handleWorkflowImport(pathArg, opts) {
+    const { db } = openDb(opts.path);
+    try {
+        const resolved = path.resolve(pathArg);
+        const isDir = fs.existsSync(resolved) && fs.statSync(resolved).isDirectory();
+        const result = (0, workflow_import_1.importWorkflowDocs)(db, isDir ? resolved : undefined, isDir ? undefined : resolved);
+        console.log(`\n📥 Import complete.`);
+        if (result.created.length)
+            console.log(`   Created (${result.created.length}): ${result.created.join(', ')}`);
+        if (result.updated.length)
+            console.log(`   Updated (${result.updated.length}): ${result.updated.join(', ')}`);
+        if (result.skipped.length)
+            console.log(`   Skipped (${result.skipped.length}): ${result.skipped.join(', ')}`);
+        if (!result.created.length && !result.updated.length && !result.skipped.length) {
+            console.log('   Nothing to import.');
+        }
+        console.log();
+    }
+    finally {
+        db.close();
+    }
+}
+//# sourceMappingURL=workflow.js.map

package/dist/cli/workflow.js.map

@@ -0,0 +1 @@
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package/dist/db/analyze.d.ts

@@ -0,0 +1,67 @@
+import { DevMindDatabase } from './database';
+export interface AnalysisOptions {
+    fix?: boolean;
+    godEntityThreshold?: number;
+}
+export interface AnalysisReport {
+    fixed: boolean;
+    summary: Record<string, number>;
+    god_entities: {
+        id: string;
+        name: string;
+        file_path: string;
+        degree: number;
+    }[];
+    circular_dependencies: string[][];
+    orphaned_nodes: {
+        id: string;
+        name: string;
+        file_path: string;
+    }[];
+    dangling_edges: {
+        source_node_id: string;
+        target_node_id: string;
+    }[];
+    duplicate_ids: {
+        lower_id: string;
+        ids: string[];
+    }[];
+    missing_developer_attribution: {
+        id: string;
+        node_id: string;
+        updated_at: string;
+    }[];
+    empty_code_snapshots: {
+        id: string;
+        node_id: string;
+        updated_at: string;
+    }[];
+    spurious_nodes: {
+        id: string;
+        name: string;
+        file_path: string;
+    }[];
+    missing_files: {
+        id: string;
+        name: string;
+        file_path: string;
+    }[];
+    renamed_files: {
+        repo: string;
+        from: string;
+        to: string;
+        migrated: boolean;
+    }[];
+    untracked_files: {
+        repo: string;
+        file: string;
+    }[];
+}
+/**
+ * Runs every local, zero-AI health check against the graph and — when `fix` is true —
+ * applies only the safe/reversible fixes (soft-deprecate dead nodes, delete dangling
+ * edges, migrate renames). Everything else is report-only: god entities, cycles,
+ * duplicate ids, missing developer attribution, empty snapshots, and untracked files
+ * all need human/AI judgement a mechanical fixer shouldn't make on its own.
+ */
+export declare function runAnalysis(db: DevMindDatabase, workspaceRoot: string, opts?: AnalysisOptions): AnalysisReport;

package/dist/db/analyze.js

@@ -0,0 +1,163 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.runAnalysis = runAnalysis;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const config_1 = require("../utils/config");
+const git_1 = require("../utils/git");
+const scanner_1 = require("../utils/scanner");
+const LAST_ANALYSIS_KEY = 'last_analysis_at';
+const DEFAULT_LOOKBACK_DAYS = 30;
+/**
+ * Runs every local, zero-AI health check against the graph and — when `fix` is true —
+ * applies only the safe/reversible fixes (soft-deprecate dead nodes, delete dangling
+ * edges, migrate renames). Everything else is report-only: god entities, cycles,
+ * duplicate ids, missing developer attribution, empty snapshots, and untracked files
+ * all need human/AI judgement a mechanical fixer shouldn't make on its own.
+ */
+function runAnalysis(db, workspaceRoot, opts = {}) {
+    const fix = opts.fix === true;
+    const godEntityThreshold = opts.godEntityThreshold ?? 15;
+    const god_entities = db.getGodEntities(godEntityThreshold);
+    const circular_dependencies = db.getCircularDependencies();
+    const orphaned_nodes = db.getOrphanedNodes().map(n => ({ id: n.id, name: n.name, file_path: n.file_path }));
+    const dangling_edges = db.getDanglingEdges().map(c => ({ source_node_id: c.source_node_id, target_node_id: c.target_node_id }));
+    const duplicate_ids = db.getDuplicateNodeIds().map(d => ({ lower_id: d.lowerId, ids: d.ids }));
+    const missing_developer_attribution = db.getHistoryMissingDeveloper();
+    const empty_code_snapshots = db.getEmptyCodeSnapshots();
+    const { spurious: spurious_nodes, missingFile: missing_files } = db.findSpuriousAndMissingFileNodes(workspaceRoot);
+    const lastAnalysisAt = db.getSystemMeta(LAST_ANALYSIS_KEY);
+    const lookbackIso = lastAnalysisAt || new Date(Date.now() - DEFAULT_LOOKBACK_DAYS * 24 * 60 * 60 * 1000).toISOString();
+    const renamed_files = [];
+    const untracked_files = [];
+    const context = db.getContext();
+    if (context) {
+        for (const repo of context.config.repos) {
+            const repoPath = (0, config_1.resolveRepoPath)(context, repo.name);
+            if (!repoPath || !fs.existsSync(repoPath))
+                continue;
+            for (const r of (0, git_1.getRenamedFilesSince)(repoPath, lookbackIso)) {
+                renamed_files.push({ repo: repo.name, from: r.from, to: r.to, migrated: false });
+            }
+            const changed = (0, git_1.getChangedFilesSince)(repoPath, lookbackIso);
+            const knownFiles = new Set(db.listNodes({ include_deprecated: true }).flatMap(n => (n.file_path || '').split(',').map(p => p.trim()).filter(Boolean)));
+            for (const relFile of changed) {
+                const ext = path.extname(relFile).toLowerCase();
+                if (!scanner_1.INDEXABLE_EXTENSIONS.has(ext))
+                    continue;
+                const absFile = path.resolve(repoPath, relFile);
+                if (!fs.existsSync(absFile))
+                    continue; // deleted since — not a blind spot
+                const hasNode = Array.from(knownFiles).some(f => path.resolve(f) === absFile);
+                if (!hasNode)
+                    untracked_files.push({ repo: repo.name, file: relFile });
+            }
+        }
+    }
+    if (fix) {
+        for (const n of [...orphaned_nodes, ...spurious_nodes, ...missing_files]) {
+            db.deprecateNode(n.id);
+        }
+        for (const e of dangling_edges) {
+            db.deleteDanglingEdge(e.source_node_id, e.target_node_id);
+        }
+        if (context) {
+            for (const r of renamed_files) {
+                const migrated = migrateRename(db, context, r.repo, r.from, r.to);
+                r.migrated = migrated;
+            }
+        }
+        db.setSystemMeta(LAST_ANALYSIS_KEY, new Date().toISOString());
+    }
+    const summary = {
+        god_entities: god_entities.length,
+        circular_dependencies: circular_dependencies.length,
+        orphaned_nodes: orphaned_nodes.length,
+        dangling_edges: dangling_edges.length,
+        duplicate_ids: duplicate_ids.length,
+        missing_developer_attribution: missing_developer_attribution.length,
+        empty_code_snapshots: empty_code_snapshots.length,
+        spurious_nodes: spurious_nodes.length,
+        missing_files: missing_files.length,
+        renamed_files: renamed_files.length,
+        untracked_files: untracked_files.length,
+    };
+    return {
+        fixed: fix,
+        summary,
+        god_entities,
+        circular_dependencies,
+        orphaned_nodes,
+        dangling_edges,
+        duplicate_ids,
+        missing_developer_attribution,
+        empty_code_snapshots,
+        spurious_nodes,
+        missing_files,
+        renamed_files,
+        untracked_files,
+    };
+}
+/** Migrates every node whose file_path resolves to `from` onto `to`, cascading the id/connections/history via `renameNode`. Returns true if anything was migrated. */
+function migrateRename(db, context, repoName, from, to) {
+    if (!context)
+        return false;
+    const repoPath = (0, config_1.resolveRepoPath)(context, repoName);
+    if (!repoPath)
+        return false;
+    const oldAbs = path.resolve(repoPath, from);
+    const newAbs = path.resolve(repoPath, to);
+    // Deliberately excludes deprecated nodes — renameNode's insert doesn't preserve the
+    // deprecated flag, so migrating a dead node would silently resurrect it as active.
+    // A deprecated node's file_path accuracy doesn't matter once it's already excluded
+    // from use.
+    const affected = db.listNodes().filter(n => (n.file_path || '').split(',').map(p => p.trim()).some(p => path.resolve(p) === oldAbs));
+    let migrated = false;
+    for (const node of affected) {
+        const newId = node.id.replace(from, to);
+        if (newId === node.id)
+            continue;
+        try {
+            db.renameNode(node.id, newId, undefined, newAbs);
+            migrated = true;
+        }
+        catch {
+            // Leave this node untouched — analyze reports it again next run rather than failing the whole batch.
+        }
+    }
+    return migrated;
+}
+//# sourceMappingURL=analyze.js.map

package/dist/db/analyze.js.map

@@ -0,0 +1 @@
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