devsmind-mcp 2.0.4 → 2.1.0

package/dist/db/edges.d.ts

@@ -0,0 +1,42 @@
+import { DevMindDatabase } from './database';
+import { MissingRef } from '../utils/ast';
+/** Aggregated missing-node record (deduped by target file + symbol). */
+export interface MissingAgg {
+    file: string;
+    symbol: string;
+    referenced_by: Set<string>;
+}
+/** Builds a MissingRef -> MissingAgg collector (dedupes by target file + symbol). */
+export declare function createMissingCollector(): {
+    missing: Map<string, MissingAgg>;
+    onMissing: (rec: MissingRef) => void;
+};
+/**
+ * Deterministically creates nodes for used-but-unextracted references (Phase-1 gaps) from
+ * the AST — no LLM — re-resolves edges for the new nodes and their callers so the edges
+ * appear. Returns the number of nodes auto-created. This is inbuilt behaviour of every
+ * edge-resolution run.
+ *
+ * @param opts.writeReport  write `missing_nodes_report.json` (CLI indexer wants this; the MCP
+ *                          commit path does not — defaults true).
+ * @param opts.quiet        suppress console output (MCP path; defaults false).
+ */
+export declare function finalizeMissingNodes(resolvedDevmind: string, db: DevMindDatabase, missing: Map<string, MissingAgg>, opts?: {
+    writeReport?: boolean;
+    quiet?: boolean;
+}): number;
+/**
+ * Resolves outgoing connections for a batch of source nodes via the local AST resolver, adding
+ * each resolved edge additively (INSERT OR IGNORE), then auto-creating any missing target nodes.
+ * Shared by the CLI indexer and the MCP commit_changes flow.
+ *
+ * @param opts.clearSources  delete the source nodes' existing OUTGOING edges before re-resolving
+ *   (drops edges the code no longer has) while leaving every other node's edges intact. Off by
+ *   default (pure-additive) to match the CLI's per-node loop.
+ */
+export declare function resolveEdgesForNodes(db: DevMindDatabase, devmindPath: string, sourceNodeIds: string[], opts?: {
+    clearSources?: boolean;
+}): {
+    edgesAdded: number;
+    missingFilled: number;
+};

package/dist/db/edges.js

@@ -0,0 +1,162 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.createMissingCollector = createMissingCollector;
+exports.finalizeMissingNodes = finalizeMissingNodes;
+exports.resolveEdgesForNodes = resolveEdgesForNodes;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const ast_1 = require("../utils/ast");
+/** Builds a MissingRef -> MissingAgg collector (dedupes by target file + symbol). */
+function createMissingCollector() {
+    const missing = new Map();
+    const onMissing = (rec) => {
+        const key = rec.targetFile + ' ' + rec.name;
+        let e = missing.get(key);
+        if (!e) {
+            e = { file: rec.targetFile, symbol: rec.name, referenced_by: new Set() };
+            missing.set(key, e);
+        }
+        e.referenced_by.add(rec.sourceNodeId);
+    };
+    return { missing, onMissing };
+}
+/**
+ * Deterministically creates nodes for used-but-unextracted references (Phase-1 gaps) from
+ * the AST — no LLM — re-resolves edges for the new nodes and their callers so the edges
+ * appear. Returns the number of nodes auto-created. This is inbuilt behaviour of every
+ * edge-resolution run.
+ *
+ * @param opts.writeReport  write `missing_nodes_report.json` (CLI indexer wants this; the MCP
+ *                          commit path does not — defaults true).
+ * @param opts.quiet        suppress console output (MCP path; defaults false).
+ */
+function finalizeMissingNodes(resolvedDevmind, db, missing, opts = {}) {
+    const writeReport = opts.writeReport !== false;
+    const quiet = opts.quiet === true;
+    const filledIds = new Set();
+    if (missing.size > 0) {
+        const reresolve = new Set();
+        for (const e of missing.values()) {
+            const derived = (0, ast_1.extractNodeFromFile)(e.file, e.symbol);
+            if (!derived)
+                continue; // can't locate the declaration — leave in report only
+            const id = `${db.toRepoRelativePath(e.file)}#${e.symbol}`;
+            db.upsertNode({ id, name: derived.name, type: derived.type, file_path: e.file, signature: derived.signature });
+            db.updateHistory({
+                node_id: id,
+                code_snapshot: derived.codeSnapshot,
+                reasoning: {
+                    what_changed: 'Auto-created from a used-but-unextracted reference (--fill-missing)',
+                    why: 'Fill a Phase-1 extraction gap detected during edge resolution',
+                    goal: 'Complete the node graph deterministically from the AST',
+                    developer: 'devsmind fill-missing',
+                    model: 'ast'
+                }
+            });
+            filledIds.add(id);
+            for (const s of e.referenced_by)
+                reresolve.add(s);
+        }
+        if (filledIds.size > 0) {
+            const allNodes = db.listNodes();
+            const allIds = new Set(allNodes.map(n => n.id));
+            for (const id of new Set([...filledIds, ...reresolve])) {
+                const n = db.getNode(id);
+                if (!n || !n.file_path)
+                    continue;
+                for (const t of (0, ast_1.resolveConnectionsLocally)(id, n.file_path, allNodes, resolvedDevmind)) {
+                    if (allIds.has(t))
+                        db.addConnection(id, t);
+                }
+            }
+        }
+    }
+    if (writeReport) {
+        const report = [...missing.values()].map(e => {
+            const id = `${db.toRepoRelativePath(e.file)}#${e.symbol}`;
+            return {
+                file: db.toRepoRelativePath(e.file),
+                symbol: e.symbol,
+                count: e.referenced_by.size,
+                referenced_by: [...e.referenced_by],
+                filled: filledIds.has(id)
+            };
+        }).sort((a, b) => b.count - a.count);
+        try {
+            fs.writeFileSync(path.join(resolvedDevmind, 'missing_nodes_report.json'), JSON.stringify({ total: report.length, filled: filledIds.size, missing: report }, null, 2), 'utf-8');
+        }
+        catch { /* ignore */ }
+        if (!quiet) {
+            console.log(`\n  🔍 Missing-node references: ${report.length} — auto-created ${filledIds.size}`);
+            console.log(`  └─ ${path.join(resolvedDevmind, 'missing_nodes_report.json')}`);
+        }
+    }
+    return filledIds.size;
+}
+/**
+ * Resolves outgoing connections for a batch of source nodes via the local AST resolver, adding
+ * each resolved edge additively (INSERT OR IGNORE), then auto-creating any missing target nodes.
+ * Shared by the CLI indexer and the MCP commit_changes flow.
+ *
+ * @param opts.clearSources  delete the source nodes' existing OUTGOING edges before re-resolving
+ *   (drops edges the code no longer has) while leaving every other node's edges intact. Off by
+ *   default (pure-additive) to match the CLI's per-node loop.
+ */
+function resolveEdgesForNodes(db, devmindPath, sourceNodeIds, opts = {}) {
+    if (sourceNodeIds.length === 0)
+        return { edgesAdded: 0, missingFilled: 0 };
+    if (opts.clearSources) {
+        db.clearConnectionsForSources(sourceNodeIds);
+    }
+    const { missing, onMissing } = createMissingCollector();
+    const allNodes = db.listNodes();
+    const allIds = new Set(allNodes.map(n => n.id));
+    let edgesAdded = 0;
+    for (const rawId of sourceNodeIds) {
+        const n = db.getNode(rawId);
+        if (!n || !n.file_path)
+            continue;
+        for (const targetId of (0, ast_1.resolveConnectionsLocally)(n.id, n.file_path, allNodes, devmindPath, onMissing)) {
+            if (allIds.has(targetId)) {
+                db.addConnection(n.id, targetId);
+                edgesAdded++;
+            }
+        }
+    }
+    const missingFilled = finalizeMissingNodes(devmindPath, db, missing, { writeReport: false, quiet: true });
+    return { edgesAdded, missingFilled };
+}
+//# sourceMappingURL=edges.js.map

package/dist/db/edges.js.map

@@ -0,0 +1 @@
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package/dist/db/indexer.d.ts

@@ -13,8 +13,8 @@ export interface IndexScratchpad {
     repos_done: string[];
     current_repo: string | null;
 }
-export declare function readScratchpad(devmindPath: string): IndexScratchpad | null;
-export declare function writeScratchpad(devmindPath: string, data: IndexScratchpad): void;
-export declare function createScratchpad(devmindPath: string, filesTotal: number): IndexScratchpad;
+export declare function readScratchpad(devmindPath: string, fileName?: string): IndexScratchpad | null;
+export declare function writeScratchpad(devmindPath: string, data: IndexScratchpad, fileName?: string): void;
+export declare function createScratchpad(devmindPath: string, filesTotal: number, fileName?: string): IndexScratchpad;
 export declare function updateScratchpad(devmindPath: string, patch: Partial<Omit<IndexScratchpad, 'started_at' | 'status'>>): IndexScratchpad;
 export declare function completeScratchpad(devmindPath: string): IndexScratchpad;

package/dist/db/indexer.js

@@ -41,11 +41,11 @@ exports.completeScratchpad = completeScratchpad;
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const SCRATCHPAD_FILE = 'index_scratchpad.json';
-function scratchpadPath(devmindPath) {
-    return path.join(path.resolve(devmindPath), SCRATCHPAD_FILE);
+function scratchpadPath(devmindPath, fileName = SCRATCHPAD_FILE) {
+    return path.join(path.resolve(devmindPath), fileName);
 }
-function readScratchpad(devmindPath) {
-    const p = scratchpadPath(devmindPath);
+function readScratchpad(devmindPath, fileName) {
+    const p = scratchpadPath(devmindPath, fileName);
     if (!fs.existsSync(p))
         return null;
     try {
@@ -55,11 +55,11 @@ function readScratchpad(devmindPath) {
         return null;
     }
 }
-function writeScratchpad(devmindPath, data) {
-    const p = scratchpadPath(devmindPath);
+function writeScratchpad(devmindPath, data, fileName) {
+    const p = scratchpadPath(devmindPath, fileName);
     fs.writeFileSync(p, JSON.stringify(data, null, 2), 'utf-8');
 }
-function createScratchpad(devmindPath, filesTotal) {
+function createScratchpad(devmindPath, filesTotal, fileName) {
     const now = new Date().toISOString();
     const pad = {
         status: 'in_progress',
@@ -76,7 +76,7 @@ function createScratchpad(devmindPath, filesTotal) {
         repos_done: [],
         current_repo: null
     };
-    writeScratchpad(devmindPath, pad);
+    writeScratchpad(devmindPath, pad, fileName);
     return pad;
 }
 function updateScratchpad(devmindPath, patch) {

package/dist/db/indexer.js.map

@@ -1 +1 @@
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package/dist/db/schema.js

@@ -1,44 +1,44 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.INIT_SCHEMA_SQL = void 0;
-exports.INIT_SCHEMA_SQL = `
-CREATE TABLE IF NOT EXISTS nodes (
-  id          TEXT PRIMARY KEY,
-  type        TEXT NOT NULL,
-  name        TEXT NOT NULL,
-  file_path   TEXT NOT NULL,
-  signature   TEXT,
-  deprecated  INTEGER DEFAULT 0,
-  created_at  DATETIME DEFAULT CURRENT_TIMESTAMP
-);
-
-CREATE TABLE IF NOT EXISTS node_connections (
-  source_node_id  TEXT,
-  target_node_id  TEXT,
-  PRIMARY KEY (source_node_id, target_node_id),
-  FOREIGN KEY (source_node_id) REFERENCES nodes (id) ON DELETE CASCADE,
-  FOREIGN KEY (target_node_id) REFERENCES nodes (id) ON DELETE CASCADE
-);
-
-CREATE TABLE IF NOT EXISTS history (
-  id             TEXT PRIMARY KEY,
-  node_id        TEXT NOT NULL,
-  session_id     TEXT NOT NULL,
-  created_at     DATETIME DEFAULT CURRENT_TIMESTAMP,
-  updated_at     DATETIME DEFAULT CURRENT_TIMESTAMP,
-  code_snapshot  TEXT NOT NULL,
-  reasoning      TEXT NOT NULL,
-  FOREIGN KEY (node_id) REFERENCES nodes (id) ON DELETE CASCADE
-);
-
-CREATE TABLE IF NOT EXISTS system_meta (
-  key TEXT PRIMARY KEY,
-  value TEXT NOT NULL,
-  updated_at DATETIME DEFAULT CURRENT_TIMESTAMP
-);
-
--- Index for searching nodes by name and type
-CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes (name);
-CREATE INDEX IF NOT EXISTS idx_history_node_id ON history (node_id);
+exports.INIT_SCHEMA_SQL = `
+CREATE TABLE IF NOT EXISTS nodes (
+  id          TEXT PRIMARY KEY,
+  type        TEXT NOT NULL,
+  name        TEXT NOT NULL,
+  file_path   TEXT NOT NULL,
+  signature   TEXT,
+  deprecated  INTEGER DEFAULT 0,
+  created_at  DATETIME DEFAULT CURRENT_TIMESTAMP
+);
+
+CREATE TABLE IF NOT EXISTS node_connections (
+  source_node_id  TEXT,
+  target_node_id  TEXT,
+  PRIMARY KEY (source_node_id, target_node_id),
+  FOREIGN KEY (source_node_id) REFERENCES nodes (id) ON DELETE CASCADE,
+  FOREIGN KEY (target_node_id) REFERENCES nodes (id) ON DELETE CASCADE
+);
+
+CREATE TABLE IF NOT EXISTS history (
+  id             TEXT PRIMARY KEY,
+  node_id        TEXT NOT NULL,
+  session_id     TEXT NOT NULL,
+  created_at     DATETIME DEFAULT CURRENT_TIMESTAMP,
+  updated_at     DATETIME DEFAULT CURRENT_TIMESTAMP,
+  code_snapshot  TEXT NOT NULL,
+  reasoning      TEXT NOT NULL,
+  FOREIGN KEY (node_id) REFERENCES nodes (id) ON DELETE CASCADE
+);
+
+CREATE TABLE IF NOT EXISTS system_meta (
+  key TEXT PRIMARY KEY,
+  value TEXT NOT NULL,
+  updated_at DATETIME DEFAULT CURRENT_TIMESTAMP
+);
+
+-- Index for searching nodes by name and type
+CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes (name);
+CREATE INDEX IF NOT EXISTS idx_history_node_id ON history (node_id);
 `;
 //# sourceMappingURL=schema.js.map

package/dist/db/staging.d.ts

@@ -0,0 +1,39 @@
+import { DevMindDatabase, ReasoningObject } from './database';
+/** One staged change — the same payload as update_history, buffered for a later commit. */
+export interface StagedEntry {
+    node_id: string;
+    file_path: string;
+    code_snapshot: string;
+    reasoning: string | ReasoningObject;
+    name?: string;
+    type?: string;
+    signature?: string;
+    session_id?: string;
+    /** Optional explicit edges to add on top of AST resolution (source defaults to this entry). */
+    connections?: {
+        source_node_id?: string;
+        target_node_id: string;
+    }[];
+}
+export declare function readStaged(devmindPath: string): StagedEntry[];
+/** Appends one entry to the buffer and returns the new pending count. */
+export declare function stageEntry(devmindPath: string, entry: StagedEntry): number;
+export declare function clearStaged(devmindPath: string): void;
+export interface CommitSummary {
+    nodes: number;
+    history_entries: number;
+    edges_added: number;
+    missing_filled: number;
+}
+/**
+ * Two-pass commit of a batch of staged changes:
+ *   Pass 1 — upsert every node + write its history entry (so all nodes exist before any edge
+ *            resolution; forward references within the batch resolve regardless of order).
+ *   Pass 2 — clear-then-resolve each staged node's OUTGOING edges via the local AST resolver,
+ *            auto-creating any missing target nodes. Only the staged nodes' own outbound edges
+ *            are recomputed; every other node's edges are left intact.
+ *
+ * Idempotent: re-running the same batch yields the same graph (upsert + INSERT OR IGNORE +
+ * clear-then-resolve). Callers should clear the buffer only after this returns successfully.
+ */
+export declare function commitStagedChanges(db: DevMindDatabase, devmindPath: string, entries: StagedEntry[]): CommitSummary;

package/dist/db/staging.js

@@ -0,0 +1,137 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.readStaged = readStaged;
+exports.stageEntry = stageEntry;
+exports.clearStaged = clearStaged;
+exports.commitStagedChanges = commitStagedChanges;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const edges_1 = require("./edges");
+const STAGING_FILE = 'history_scratchpad.json';
+function stagingPath(devmindPath) {
+    return path.join(path.resolve(devmindPath), STAGING_FILE);
+}
+/** Atomic write (temp file + rename) so an accumulating buffer is never left half-written. */
+function writeBuffer(devmindPath, buf) {
+    const target = stagingPath(devmindPath);
+    const tmp = `${target}.${process.pid}.tmp`;
+    fs.writeFileSync(tmp, JSON.stringify(buf, null, 2), 'utf-8');
+    fs.renameSync(tmp, target);
+}
+function readStaged(devmindPath) {
+    try {
+        const raw = fs.readFileSync(stagingPath(devmindPath), 'utf-8');
+        const buf = JSON.parse(raw);
+        return Array.isArray(buf.entries) ? buf.entries : [];
+    }
+    catch {
+        return [];
+    }
+}
+/** Appends one entry to the buffer and returns the new pending count. */
+function stageEntry(devmindPath, entry) {
+    const entries = readStaged(devmindPath);
+    entries.push(entry);
+    writeBuffer(devmindPath, { entries, updated_at: new Date().toISOString() });
+    return entries.length;
+}
+function clearStaged(devmindPath) {
+    const target = stagingPath(devmindPath);
+    try {
+        if (fs.existsSync(target))
+            fs.unlinkSync(target);
+    }
+    catch { /* ignore */ }
+}
+/** Resolves an entry's raw node_id to the canonical `{repo}/relpath#symbol` form. */
+function resolveEntryId(db, entry) {
+    if (entry.node_id.includes('#'))
+        return entry.node_id;
+    const repoRelPath = db.toRepoRelativePath(entry.file_path);
+    return `${repoRelPath}#${entry.node_id}`;
+}
+/**
+ * Two-pass commit of a batch of staged changes:
+ *   Pass 1 — upsert every node + write its history entry (so all nodes exist before any edge
+ *            resolution; forward references within the batch resolve regardless of order).
+ *   Pass 2 — clear-then-resolve each staged node's OUTGOING edges via the local AST resolver,
+ *            auto-creating any missing target nodes. Only the staged nodes' own outbound edges
+ *            are recomputed; every other node's edges are left intact.
+ *
+ * Idempotent: re-running the same batch yields the same graph (upsert + INSERT OR IGNORE +
+ * clear-then-resolve). Callers should clear the buffer only after this returns successfully.
+ */
+function commitStagedChanges(db, devmindPath, entries) {
+    const stagedIds = [];
+    // Pass 1 — nodes + history (+ any explicit connections the caller supplied).
+    const explicitEdges = [];
+    for (const entry of entries) {
+        const nodeId = resolveEntryId(db, entry);
+        stagedIds.push(nodeId);
+        const name = entry.name || (entry.node_id.includes('.') ? entry.node_id.split('.').pop() : entry.node_id);
+        const type = entry.type || (entry.node_id.includes('.') ? 'method' : 'function');
+        db.upsertNode({
+            id: nodeId,
+            name,
+            type,
+            file_path: entry.file_path,
+            signature: entry.signature || null
+        });
+        db.updateHistory({
+            node_id: nodeId,
+            code_snapshot: entry.code_snapshot,
+            reasoning: entry.reasoning,
+            session_id: entry.session_id
+        });
+        for (const c of entry.connections || []) {
+            if (c.target_node_id)
+                explicitEdges.push({ source: c.source_node_id || nodeId, target: c.target_node_id });
+        }
+    }
+    // Pass 2 — AST edge resolution for the batch (clear stale outbound edges of staged nodes first).
+    const { edgesAdded, missingFilled } = (0, edges_1.resolveEdgesForNodes)(db, devmindPath, stagedIds, { clearSources: true });
+    // Apply any explicit edges the caller passed, on top of AST resolution (additive).
+    for (const e of explicitEdges) {
+        db.addConnection(e.source, e.target);
+    }
+    return {
+        nodes: entries.length,
+        history_entries: entries.length,
+        edges_added: edgesAdded + explicitEdges.length,
+        missing_filled: missingFilled
+    };
+}
+//# sourceMappingURL=staging.js.map

package/dist/db/staging.js.map

@@ -0,0 +1 @@
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