dead-links 0.2.0 → 0.3.0

package/README.md

@@ -39,7 +39,7 @@ Options:
   --no-color                 Disable colored output
   --suggestions              Show smart suggestions for broken links
   --debug                    Enable debug mode with verbose output
-  --fix                      Auto-fix broken links (structure ready)
+  --fix                      Auto-fix broken links using generated suggestions
 ```
 
 ### broken
@@ -160,7 +160,28 @@ npx dead-links scan --vault "my-vault" --no-color
 # Show orphan notes list
 npx dead-links orphans --vault "my-vault" --verbose
 ```
+## Opening Reports
 
+After generating a report with `--output`, you can open it with:
+
+```bash
+# Windows
+start report.html
+
+# macOS
+open report.html
+
+# Linux
+xdg-open report.html
+
+# Or navigate to the file in your file explorer and double-click it
+```
+
+The generated files are saved in your current directory:
+- `report.html` - Open in any web browser
+- `issues.csv` - Open with Excel, Google Sheets, or any spreadsheet app
+- `graph.md` - View in GitHub, Obsidian, or any markdown viewer
+- `graph.dot` - Render with Graphviz: `dot -Tpng graph.dot -o graph.png`
 ## Output Format
 
 ```
@@ -273,19 +294,5 @@ Exit code is `0` if no issues found, `1` if issues exist. Perfect for CI pipelin
 - `![[image.png]]` - Embeds
 - `[text](file.md)` - Markdown links
 
-## Version & Status
-
-**Current Version:** v0.2.0 ✨ (Major update with new features)
-
-### What's New in v0.2.0
-- ✨ Multiple export formats (HTML, CSV, Mermaid, GraphViz)
-- 💡 Smart suggestions with similarity scoring
-- 📊 New `stats` command with vault metrics
-- 🐛 Debug mode for diagnostics
-- ⚡ 30% performance improvement through parallelization
-
-### Changelog
-See [CHANGELOG.md](CHANGELOG.md) for detailed release notes.
-
 ## License
 MIT

package/dist/index.js

@@ -2,7 +2,8 @@
 
 // src/index.ts
 import { Command } from "commander";
-import { writeFile } from "fs/promises";
+import { readFileSync } from "fs";
+import { writeFile as writeFile2 } from "fs/promises";
 import ora from "ora";
 
 // src/core/vault-loader.ts
@@ -24,6 +25,7 @@ async function loadVault(vaultPath, customIgnore = []) {
   const notes = [];
   for (const file of files) {
     const fullPath = resolve(absolutePath, file);
+    const relativePath = file.replace(/\\/g, "/");
     const content = await readFile(fullPath, "utf-8");
     const parsed = matter(content);
     const aliases = [];
@@ -36,7 +38,7 @@ async function loadVault(vaultPath, customIgnore = []) {
     }
     notes.push({
       path: fullPath,
-      relativePath: file,
+      relativePath,
       content: parsed.content,
       aliases,
       links: []
@@ -155,8 +157,42 @@ var AliasResolver = class {
   }
 };
 
+// src/core/link-resolver.ts
+import { dirname, isAbsolute, normalize, resolve as resolve2 } from "path";
+var REMOTE_TARGET = /^(?:[a-z][a-z\d+.-]*:|\/\/)/i;
+function isExternalTarget(target) {
+  return REMOTE_TARGET.test(target) || target.startsWith("#");
+}
+function resolveNoteLink(link, source, notes, aliases, vaultPath) {
+  if (isExternalTarget(link.target)) return null;
+  if (link.type === "markdown") {
+    const target = decodeTarget(link.target).replace(/\\/g, "/");
+    const sourceRelativePath = normalize(resolve2(dirname(source.path), target));
+    const exact = notes.find((note) => normalize(note.path) === sourceRelativePath);
+    if (exact) return exact.path;
+    const vaultRelativePath = normalize(resolve2(vaultPath, target.replace(/^\/+/, "")));
+    const vaultRelative = notes.find((note) => normalize(note.path) === vaultRelativePath);
+    if (vaultRelative) return vaultRelative.path;
+  }
+  return aliases.resolve(decodeTarget(link.target));
+}
+function resolveAttachmentPath(target, source, vaultPath) {
+  const decoded = decodeTarget(target).replace(/\\/g, "/");
+  if (isAbsolute(decoded)) return normalize(decoded);
+  const relativeToSource = normalize(resolve2(dirname(source.path), decoded));
+  if (relativeToSource.startsWith(normalize(vaultPath))) return relativeToSource;
+  return normalize(resolve2(vaultPath, decoded.replace(/^\/+/, "")));
+}
+function decodeTarget(target) {
+  try {
+    return decodeURIComponent(target);
+  } catch {
+    return target;
+  }
+}
+
 // src/core/graph-builder.ts
-function buildGraph(notes, resolver) {
+function buildGraph(notes, resolver, vaultPath) {
   const notePathMap = /* @__PURE__ */ new Map();
   for (const note of notes) {
     notePathMap.set(note.path, {
@@ -168,10 +204,8 @@ function buildGraph(notes, resolver) {
   for (const note of notes) {
     const node = notePathMap.get(note.path);
     for (const link of note.links) {
-      if (link.type === "markdown" && !link.target.endsWith(".md")) {
-        continue;
-      }
-      const resolvedPath = resolver.resolve(link.target);
+      if (isExternalTarget(link.target)) continue;
+      const resolvedPath = resolveNoteLink(link, note, notes, resolver, vaultPath);
       if (resolvedPath && notePathMap.has(resolvedPath)) {
         if (!node.outgoing.includes(resolvedPath)) {
           node.outgoing.push(resolvedPath);
@@ -233,23 +267,34 @@ function isAttachment(target) {
   const ext = target.split(".").pop()?.toLowerCase();
   return ext ? ATTACHMENT_EXTENSIONS.has(ext) : false;
 }
-function analyze(notes, vaultPath, checkAttachments = false) {
+function analyze(notes, vaultPath, checkAttachments = false, ignoreFolders = []) {
   const resolver = new AliasResolver(notes);
-  const graph = buildGraph(notes, resolver);
+  const graph = buildGraph(notes, resolver, vaultPath);
   const brokenLinks = [];
   const orphanNotes = [];
   for (const node of graph) {
     if (node.incoming.length === 0 && node.outgoing.length === 0) {
-      orphanNotes.push(node.note);
+      if (!isIgnoredFolder(node.note.relativePath, ignoreFolders)) {
+        orphanNotes.push(node.note);
+      }
     }
     for (const link of node.note.links) {
-      if (link.type === "markdown" && !link.target.endsWith(".md")) {
+      if (isExternalTarget(link.target)) {
         continue;
       }
-      if (!checkAttachments && isAttachment(link.target)) {
+      if (isAttachment(link.target)) {
+        if (!checkAttachments) continue;
+        const attachmentPath = resolveAttachmentPath(link.target, node.note, vaultPath);
+        if (!existsSync(attachmentPath)) {
+          brokenLinks.push({
+            source: node.note.relativePath,
+            link,
+            reason: `File "${link.target}" does not exist`
+          });
+        }
         continue;
       }
-      const resolvedPath = resolver.resolve(link.target);
+      const resolvedPath = resolveNoteLink(link, node.note, notes, resolver, vaultPath);
       if (resolvedPath === node.note.path) {
         continue;
       }
@@ -259,14 +304,6 @@ function analyze(notes, vaultPath, checkAttachments = false) {
           link,
           reason: `Target "${link.target}" not found in vault`
         });
-      } else if (link.type === "embed" || link.type === "markdown") {
-        if (!existsSync(resolvedPath)) {
-          brokenLinks.push({
-            source: node.note.relativePath,
-            link,
-            reason: `File "${link.target}" does not exist`
-          });
-        }
       }
     }
   }
@@ -285,6 +322,13 @@ function analyze(notes, vaultPath, checkAttachments = false) {
     }
   };
 }
+function isIgnoredFolder(relativePath, ignoreFolders) {
+  const folder = relativePath.includes("/") ? relativePath.split("/").slice(0, -1).join("/") : "";
+  return ignoreFolders.some((ignored) => {
+    const normalized = ignored.replace(/\\/g, "/").replace(/^\/+|\/+$/g, "");
+    return folder === normalized || folder.startsWith(`${normalized}/`);
+  });
+}
 function countConnectedComponents(graph) {
   if (graph.length === 0) return 0;
   const visited = /* @__PURE__ */ new Set();
@@ -389,8 +433,8 @@ var DeadLinksEngine = class {
         return Promise.resolve();
       })
     );
-    const report = analyze(notes, vaultPath, config.checkAttachments);
-    if (config.suggestions) {
+    const report = analyze(notes, vaultPath, config.checkAttachments, config.ignoreFolders);
+    if (config.suggestions || config.fix) {
       const brokenTargets = Array.from(
         new Set(report.brokenLinks.map((b) => b.link.target))
       );
@@ -403,11 +447,11 @@ var DeadLinksEngine = class {
 
 // src/utils/config-loader.ts
 import { readFile as readFile2, access } from "fs/promises";
-import { resolve as resolve2, join } from "path";
+import { resolve as resolve3, join } from "path";
 var CONFIG_FILES = [".deadlinksrc.json", ".deadlinksrc", "dead-links.config.json"];
 var ConfigLoader = class {
   async loadConfig(vaultPath) {
-    const absolutePath = resolve2(vaultPath);
+    const absolutePath = resolve3(vaultPath);
     for (const configFile of CONFIG_FILES) {
       const configPath = join(absolutePath, configFile);
       try {
@@ -440,13 +484,15 @@ var ConfigLoader = class {
 };
 
 // src/reporters/terminal-reporter.ts
-import chalk from "chalk";
+import { Chalk } from "chalk";
 var TerminalReporter = class {
   ignoreFolders;
   quiet;
-  constructor(ignoreFolders = [], quiet = false) {
+  chalk;
+  constructor(ignoreFolders = [], quiet = false, noColor = false) {
     this.ignoreFolders = ignoreFolders;
     this.quiet = quiet;
+    this.chalk = new Chalk({ level: noColor ? 0 : void 0 });
   }
   report(result) {
     if (this.quiet) {
@@ -488,12 +534,13 @@ var TerminalReporter = class {
     return out;
   }
   statLine(label, value, color = "white") {
-    return `  ${chalk.gray(label)}  ${color === "red" ? chalk.red.bold(value) : color === "yellow" ? chalk.yellow.bold(value) : chalk.white.bold(value)}
+    const chalk = this.chalk;
+    return `  ${this.chalk.gray(label)}  ${color === "red" ? this.chalk.red.bold(value) : color === "yellow" ? this.chalk.yellow.bold(value) : this.chalk.white.bold(value)}
 `;
   }
   printBrokenLinks(brokenLinks) {
     if (brokenLinks.length === 0) {
-      return chalk.green("  \u2713  No broken links\n\n");
+      return this.chalk.green("  \u2713  No broken links\n\n");
     }
     const grouped = /* @__PURE__ */ new Map();
     for (const broken of brokenLinks) {
@@ -502,18 +549,18 @@ var TerminalReporter = class {
       grouped.set(broken.source, existing);
     }
     const sorted = [...grouped.entries()].sort((a, b) => b[1].length - a[1].length);
-    let out = chalk.bold.red(`
+    let out = this.chalk.bold.red(`
 \u2716  Broken links (${brokenLinks.length})
 
 `);
     for (const [source, links] of sorted) {
       const count = links.length;
       const isMultiple = count >= 2;
-      const countStr = isMultiple ? chalk.red.bold(`\u2716  ${count}`) : chalk.yellow.bold(`\u2716  ${count}`);
-      out += `  ${countStr}  ${chalk.white.bold(source)}
+      const countStr = isMultiple ? this.chalk.red.bold(`\u2716  ${count}`) : this.chalk.yellow.bold(`\u2716  ${count}`);
+      out += `  ${countStr}  ${this.chalk.white.bold(source)}
 `;
       for (const link of links) {
-        const pill2 = isMultiple ? chalk.redBright(`[${link.link.target}]`) : chalk.yellowBright(`[${link.link.target}]`);
+        const pill2 = isMultiple ? this.chalk.redBright(`[${link.link.target}]`) : this.chalk.yellowBright(`[${link.link.target}]`);
         out += `      ${pill2}
 `;
       }
@@ -523,7 +570,7 @@ var TerminalReporter = class {
   }
   printOrphanNotes(orphanNotes) {
     if (orphanNotes.length === 0) {
-      return chalk.green("  \u2713  No orphan notes\n\n");
+      return this.chalk.green("  \u2713  No orphan notes\n\n");
     }
     const byFolder = /* @__PURE__ */ new Map();
     for (const note of orphanNotes) {
@@ -535,37 +582,37 @@ var TerminalReporter = class {
     }
     const sorted = [...byFolder.entries()].sort((a, b) => b[1] - a[1]);
     if (sorted.length === 0) {
-      return chalk.green("  \u2713  No orphan notes (all in ignored folders)\n\n");
+      return this.chalk.green("  \u2713  No orphan notes (all in ignored folders)\n\n");
     }
     const maxCount = sorted[0][1];
     const barWidth = 10;
-    let out = chalk.bold.yellow(`
+    let out = this.chalk.bold.yellow(`
 \u26A0  Orphan notes (${orphanNotes.length} total)
 
 `);
     for (const [folder, count] of sorted) {
       const filled = Math.round(count / maxCount * barWidth);
       const empty = barWidth - filled;
-      const bar2 = chalk.gray("\u2588".repeat(filled) + "\u2591".repeat(empty));
-      out += `  ${chalk.gray(folder.padEnd(40))}  ${bar2}  ${chalk.white.bold(String(count))}
+      const bar2 = this.chalk.gray("\u2588".repeat(filled) + "\u2591".repeat(empty));
+      out += `  ${this.chalk.gray(folder.padEnd(40))}  ${bar2}  ${this.chalk.white.bold(String(count))}
 `;
     }
     out += "\n";
     return out;
   }
   printDuration(ms) {
-    return chalk.dim(`  Completed in ${ms}ms
+    return this.chalk.dim(`  Completed in ${ms}ms
 `);
   }
   printSuggestions(suggestions) {
-    let out = chalk.bold.cyan(`
+    let out = this.chalk.bold.cyan(`
 \u{1F4A1} Suggestions (${suggestions.length})
 
 `);
     for (const suggestion of suggestions.slice(0, 5)) {
       const confidence = Math.round(suggestion.similarity * 100);
-      const bar2 = confidence >= 80 ? chalk.green("\u2588\u2588\u2588\u2588\u2588") : confidence >= 60 ? chalk.yellow("\u2588\u2588\u2588\u2588\u2588") : chalk.gray("\u2588\u2588\u2588\u2588\u2588");
-      out += `  ${chalk.gray(suggestion.broken)} \u2192 ${chalk.cyan(suggestion.suggested)}
+      const bar2 = confidence >= 80 ? this.chalk.green("\u2588\u2588\u2588\u2588\u2588") : confidence >= 60 ? this.chalk.yellow("\u2588\u2588\u2588\u2588\u2588") : this.chalk.gray("\u2588\u2588\u2588\u2588\u2588");
+      out += `  ${this.chalk.gray(suggestion.broken)} \u2192 ${this.chalk.cyan(suggestion.suggested)}
 `;
       out += `      ${bar2} ${confidence}%
 
@@ -1049,7 +1096,7 @@ var GraphVizReporter = class {
     const nodeMap = new Map(nodesToShow.map((n) => [n.note.path, n.note.relativePath]));
     for (const node of nodesToShow) {
       const id = this.sanitizeId(node.note.relativePath);
-      const label = node.note.relativePath;
+      const label = this.escapeLabel(node.note.relativePath);
       let style = "filled";
       let color = "#ffffff";
       let fontColor = "#000000";
@@ -1097,6 +1144,9 @@ var GraphVizReporter = class {
   sanitizeId(name) {
     return name.replace(/\.(md|canvas)$/, "").replace(/[^a-zA-Z0-9_]/g, "_");
   }
+  escapeLabel(label) {
+    return label.replace(/\\/g, "\\\\").replace(/"/g, '\\"');
+  }
 };
 
 // src/utils/markdown-report.ts
@@ -1167,9 +1217,109 @@ function generateMarkdownReport(report) {
   return lines.join("\n");
 }
 
+// src/utils/auto-fixer.ts
+import { readFile as readFile3, writeFile } from "fs/promises";
+import { resolve as resolve4 } from "path";
+function escapeRegExp(string) {
+  return string.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
+}
+async function autoFixBrokenLinks(fixMap, filePath) {
+  const results = [];
+  try {
+    const content = await readFile3(filePath, "utf-8");
+    let newContent = content;
+    for (const [oldTarget, newTarget] of fixMap.entries()) {
+      const wikiRegex = new RegExp(
+        `(!?\\[\\[${escapeRegExp(oldTarget)}(?:\\|[^\\]]*)?\\]\\])`,
+        "g"
+      );
+      const wikiMatches = content.match(wikiRegex);
+      if (wikiMatches) {
+        for (const match of wikiMatches) {
+          const isEmbed = match.startsWith("!");
+          const hasAlias = match.includes("|");
+          let replacement;
+          if (hasAlias) {
+            const parts = match.split("|");
+            replacement = `${isEmbed ? "!" : ""}[[${newTarget}|${parts[1]}`;
+          } else {
+            replacement = `${isEmbed ? "!" : ""}[[${newTarget}]]`;
+          }
+          newContent = newContent.replace(match, replacement);
+          results.push({
+            file: filePath,
+            originalLink: match,
+            newLink: replacement,
+            success: true
+          });
+        }
+      }
+      const markdownRegex = new RegExp(
+        `(\\[[^\\]]*\\]\\(${escapeRegExp(oldTarget)}(?:#[^)]*)?\\))`,
+        "g"
+      );
+      const markdownMatches = content.match(markdownRegex);
+      if (markdownMatches) {
+        for (const match of markdownMatches) {
+          const linkPart = match.match(/\(([^)]+)\)/)?.[1] || "";
+          const heading = linkPart.includes("#") ? linkPart.split("#")[1] : "";
+          const newLink = heading ? `${newTarget}#${heading}` : newTarget;
+          const textPart = match.match(/\[([^\]]*)\]/)?.[0] || "[]";
+          const replacement = `${textPart}(${newLink})`;
+          newContent = newContent.replace(match, replacement);
+          results.push({
+            file: filePath,
+            originalLink: match,
+            newLink: replacement,
+            success: true
+          });
+        }
+      }
+    }
+    if (newContent !== content) {
+      await writeFile(filePath, newContent, "utf-8");
+    }
+    return results;
+  } catch (error) {
+    return [
+      {
+        file: filePath,
+        originalLink: "",
+        newLink: "",
+        success: false,
+        error: error instanceof Error ? error.message : "Unknown error"
+      }
+    ];
+  }
+}
+async function fixBrokenLinksBatch(brokenLinks, suggestionMap, vaultPath) {
+  const fileFixMap = /* @__PURE__ */ new Map();
+  for (const broken of brokenLinks) {
+    const suggestion = suggestionMap.get(broken.link.target);
+    if (!suggestion) continue;
+    if (!fileFixMap.has(broken.source)) {
+      fileFixMap.set(broken.source, /* @__PURE__ */ new Map());
+    }
+    fileFixMap.get(broken.source).set(broken.link.target, suggestion);
+  }
+  const allResults = /* @__PURE__ */ new Map();
+  const promises = Array.from(fileFixMap.entries()).map(
+    async ([source, fixMap]) => {
+      const filePath = resolve4(vaultPath, source);
+      const results = await autoFixBrokenLinks(fixMap, filePath);
+      allResults.set(source, results);
+    }
+  );
+  await Promise.all(promises);
+  return allResults;
+}
+
 // src/index.ts
+var packageMetadata = JSON.parse(
+  readFileSync(new URL("../package.json", import.meta.url), "utf8")
+);
 var program = new Command();
-program.name("dead-links").description("Scan Obsidian vaults for broken links, orphan notes, and connection graphs").version("0.2.0");
+program.name("dead-links").description("Scan Obsidian vaults for broken links, orphan notes, and connection graphs").version(packageMetadata.version);
 async function loadConfigAndAnalyze(vaultPath, cliOptions) {
   const configLoader = new ConfigLoader();
   const fileConfig = await configLoader.loadConfig(vaultPath);
@@ -1200,6 +1350,17 @@ program.command("scan").description("Scan the vault for all issues").option("--v
   try {
     const report = await loadConfigAndAnalyze(options.vault, options);
     spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);
+    let fixSummary = "";
+    if (options.fix) {
+      const suggestionMap = new Map(
+        (report.suggestions || []).map((suggestion) => [suggestion.broken, suggestion.suggested])
+      );
+      const fixResults = await fixBrokenLinksBatch(report.brokenLinks, suggestionMap, options.vault);
+      const changed = [...fixResults.values()].flat().filter((result) => result.success).length;
+      const failed = [...fixResults.values()].flat().filter((result) => !result.success).length;
+      const fixSummary2 = `Auto-fix: ${changed} link(s) changed${failed > 0 ? `, ${failed} failed` : ""}.`;
+      console.error(fixSummary2);
+    }
     if (options.debug) {
       console.log(`[DEBUG] Vault: ${options.vault}`);
       console.log(`[DEBUG] Format: ${options.format}`);
@@ -1225,11 +1386,15 @@ program.command("scan").description("Scan the vault for all issues").option("--v
       const reporter = new GraphVizReporter();
       output = reporter.report(report);
     } else {
-      const reporter = new TerminalReporter(options.ignoreFolders || [], options.quiet || false);
+      const reporter = new TerminalReporter(
+        options.ignoreFolders || [],
+        options.quiet || false,
+        options.color === false
+      );
       output = reporter.report(report);
     }
     if (options.output) {
-      await writeFile(options.output, output);
+      await writeFile2(options.output, output);
       console.log(`Report written to ${options.output}`);
     } else if (options.format === "text") {
       console.log(output);
@@ -1355,7 +1520,7 @@ program.command("report").description("Generate a markdown report").option("--va
     const report = await loadConfigAndAnalyze(options.vault, options);
     spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);
     const markdown = generateMarkdownReport(report);
-    await writeFile(options.output, markdown);
+    await writeFile2(options.output, markdown);
     console.log(`Report written to ${options.output}`);
   } catch (error) {
     spinner.fail("Scan failed");
@@ -1371,11 +1536,13 @@ program.command("stats").description("Show detailed vault statistics").option("-
     console.log("\n\u{1F4CA} Vault Statistics\n");
     console.log(`  Total Notes: ${report.stats.totalNotes}`);
     console.log(`  Total Links: ${report.stats.totalLinks}`);
-    console.log(`  Avg Links per Note: ${(report.stats.totalLinks / report.stats.totalNotes).toFixed(2)}`);
+    const averageLinks = report.stats.totalNotes === 0 ? 0 : report.stats.totalLinks / report.stats.totalNotes;
+    const healthScore = report.stats.totalLinks === 0 ? 100 : 100 - report.stats.brokenCount / report.stats.totalLinks * 100;
+    console.log(`  Avg Links per Note: ${averageLinks.toFixed(2)}`);
     console.log(`  Broken Links: ${report.stats.brokenCount}`);
     console.log(`  Orphan Notes: ${report.stats.orphanCount}`);
     console.log(`  Connected Components: ${report.stats.connectedComponents}`);
-    console.log(`  Health Score: ${(100 - report.stats.brokenCount / report.stats.totalLinks * 100).toFixed(1)}%`);
+    console.log(`  Health Score: ${healthScore.toFixed(1)}%`);
     const mostConnected = [...report.graph].sort((a, b) => b.incoming.length + b.outgoing.length - (a.incoming.length + a.outgoing.length)).slice(0, 5);
     console.log("\n\u{1F310} Most Connected Notes:");
     for (const node of mostConnected) {

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../src/core/vault-loader.ts","../src/core/link-parser.ts","../src/core/analyzer.ts","../src/core/alias-resolver.ts","../src/core/graph-builder.ts","../src/utils/suggestions.ts","../src/utils/engine.ts","../src/utils/config-loader.ts","../src/reporters/terminal-reporter.ts","../src/reporters/json-reporter.ts","../src/reporters/csv-reporter.ts","../src/reporters/html-reporter.ts","../src/reporters/mermaid-reporter.ts","../src/reporters/graphviz-reporter.ts","../src/utils/markdown-report.ts"],"sourcesContent":["import { Command } from 'commander';\nimport { writeFile } from 'node:fs/promises';\nimport ora from 'ora';\nimport { DeadLinksEngine } from './utils/engine.js';\nimport { ConfigLoader } from './utils/config-loader.js';\nimport { TerminalReporter } from './reporters/terminal-reporter.js';\nimport { JsonReporter } from './reporters/json-reporter.js';\nimport { CsvReporter } from './reporters/csv-reporter.js';\nimport { HtmlReporter } from './reporters/html-reporter.js';\nimport { MermaidReporter } from './reporters/mermaid-reporter.js';\nimport { GraphVizReporter } from './reporters/graphviz-reporter.js';\nimport { generateMarkdownReport } from './utils/markdown-report.js';\nimport type { BrokenLink, Note } from './types/index.js';\n\nconst program = new Command();\n\nprogram\n  .name('dead-links')\n  .description('Scan Obsidian vaults for broken links, orphan notes, and connection graphs')\n  .version('0.2.0');\n\nasync function loadConfigAndAnalyze(\n  vaultPath: string,\n  cliOptions: Record<string, unknown>,\n) {\n  const configLoader = new ConfigLoader();\n  const fileConfig = await configLoader.loadConfig(vaultPath);\n  const config = configLoader.mergeConfig(fileConfig, cliOptions);\n\n  const engine = new DeadLinksEngine();\n  return engine.analyze(vaultPath, config);\n}\n\nfunction printBrokenVerbose(brokenLinks: BrokenLink[]) {\n  const grouped = new Map<string, BrokenLink[]>();\n  for (const b of brokenLinks) {\n    const existing = grouped.get(b.source) || [];\n    existing.push(b);\n    grouped.set(b.source, existing);\n  }\n\n  for (const [source, links] of grouped) {\n    for (const link of links) {\n      console.log(`  ${source}  →  ${link.link.target}  (line ${link.link.line})`);\n    }\n  }\n}\n\nfunction printOrphansVerbose(orphanNotes: Note[]) {\n  for (const note of orphanNotes) {\n    console.log(`  ${note.relativePath}`);\n  }\n}\n\nprogram\n  .command('scan')\n  .description('Scan the vault for all issues')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--format <type>', 'Output format: text, json, markdown, csv, html, mermaid, dot', 'text')\n  .option('--output <file>', 'Output file path')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--attachments', 'Also check embedded attachments (images, PDFs, etc.)')\n  .option('--ignore-folders <folders...>', 'Exclude folders from orphan report')\n  .option('--quiet', 'Only show issues, no stats or summary')\n  .option('--no-color', 'Disable colored output')\n  .option('--suggestions', 'Show smart suggestions for broken links')\n  .option('--debug', 'Enable debug mode with verbose output')\n  .option('--fix', 'Automatically fix broken links (requires suggestions)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (options.debug) {\n        console.log(`[DEBUG] Vault: ${options.vault}`);\n        console.log(`[DEBUG] Format: ${options.format}`);\n        console.log(`[DEBUG] Broken links: ${report.stats.brokenCount}`);\n        console.log(`[DEBUG] Orphan notes: ${report.stats.orphanCount}`);\n      }\n\n      let output = '';\n\n      if (options.format === 'json') {\n        const reporter = new JsonReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'markdown') {\n        output = generateMarkdownReport(report);\n      } else if (options.format === 'csv') {\n        const reporter = new CsvReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'html') {\n        const reporter = new HtmlReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'mermaid') {\n        const reporter = new MermaidReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'dot') {\n        const reporter = new GraphVizReporter();\n        output = reporter.report(report);\n      } else {\n        const reporter = new TerminalReporter(options.ignoreFolders || [], options.quiet || false);\n        output = reporter.report(report);\n      }\n\n      if (options.output) {\n        await writeFile(options.output, output);\n        console.log(`Report written to ${options.output}`);\n      } else if (options.format === 'text') {\n        console.log(output);\n      } else {\n        console.log(output);\n      }\n\n      process.exit(report.stats.brokenCount > 0 || report.stats.orphanCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('broken')\n  .description('Show only broken links')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--attachments', 'Also check embedded attachments (images, PDFs, etc.)')\n  .option('--verbose', 'Show line numbers and full details')\n  .option('--suggestions', 'Show smart suggestions for broken links')\n  .option('--debug', 'Enable debug mode with verbose output')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (report.brokenLinks.length === 0) {\n        console.log('No broken links found.');\n      } else {\n        console.log(`\\nBroken links (${report.brokenLinks.length})\\n`);\n        if (options.verbose) {\n          printBrokenVerbose(report.brokenLinks);\n        } else {\n          const grouped = new Map<string, BrokenLink[]>();\n          for (const b of report.brokenLinks) {\n            const existing = grouped.get(b.source) || [];\n            existing.push(b);\n            grouped.set(b.source, existing);\n          }\n          for (const [source, links] of grouped) {\n            const targets = links.map((l: BrokenLink) => l.link.target).join(', ');\n            console.log(`  ${source}  →  ${targets}`);\n          }\n        }\n        console.log();\n\n        if (report.suggestions && report.suggestions.length > 0) {\n          console.log('💡 Suggestions:');\n          for (const suggestion of report.suggestions.slice(0, 5)) {\n            const confidence = Math.round(suggestion.similarity * 100);\n            console.log(`  ${suggestion.broken} → ${suggestion.suggested} (${confidence}%)`);\n          }\n          console.log();\n        }\n      }\n\n      process.exit(report.stats.brokenCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('orphans')\n  .description('Show only orphan notes')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--ignore-folders <folders...>', 'Exclude folders from report')\n  .option('--verbose', 'Show full list of orphan notes')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (report.orphanNotes.length === 0) {\n        console.log('No orphan notes found.');\n      } else {\n        console.log(`\\nOrphan notes (${report.orphanNotes.length})\\n`);\n        if (options.verbose) {\n          printOrphansVerbose(report.orphanNotes);\n        } else {\n          const ignoreFolders = options.ignoreFolders || [];\n          const byFolder = new Map<string, number>();\n          for (const note of report.orphanNotes) {\n            const folder = note.relativePath.includes('/')\n              ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n              : './';\n            if (ignoreFolders.some((f: string) => folder.startsWith(f + '/') || folder === f + '/')) {\n              continue;\n            }\n            byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n          }\n          for (const [folder, count] of [...byFolder.entries()].sort((a, b) => b[1] - a[1])) {\n            console.log(`  ${folder}  ${count}`);\n          }\n        }\n        console.log();\n      }\n\n      process.exit(report.stats.orphanCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('graph')\n  .description('Show connection graph')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--format <type>', 'Output format: text, json', 'text')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (options.format === 'json') {\n        console.log(JSON.stringify(report.graph, null, 2));\n      } else {\n        console.log(\n          `Graph: ${report.stats.totalNotes} notes, ${report.stats.totalLinks} links (${report.duration}ms)\\n`,\n        );\n\n        const topConnected = [...report.graph]\n          .sort((a, b) => b.incoming.length - a.incoming.length)\n          .slice(0, 10)\n          .filter((n) => n.incoming.length > 0);\n\n        if (topConnected.length > 0) {\n          console.log('Most linked-to notes:');\n          for (const node of topConnected) {\n            console.log(\n              `  ${node.note.relativePath} (${node.incoming.length} incoming, ${node.outgoing.length} outgoing)`,\n            );\n          }\n        }\n      }\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('report')\n  .description('Generate a markdown report')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--output <file>', 'Output file path', 'dead-links-report.md')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      const markdown = generateMarkdownReport(report);\n      await writeFile(options.output, markdown);\n      console.log(`Report written to ${options.output}`);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('stats')\n  .description('Show detailed vault statistics')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--debug', 'Enable debug mode')\n  .action(async (options) => {\n    const spinner = ora('Analyzing vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Analysis complete in ${report.duration}ms`);\n\n      console.log('\\n📊 Vault Statistics\\n');\n      console.log(`  Total Notes: ${report.stats.totalNotes}`);\n      console.log(`  Total Links: ${report.stats.totalLinks}`);\n      console.log(`  Avg Links per Note: ${(report.stats.totalLinks / report.stats.totalNotes).toFixed(2)}`);\n      console.log(`  Broken Links: ${report.stats.brokenCount}`);\n      console.log(`  Orphan Notes: ${report.stats.orphanCount}`);\n      console.log(`  Connected Components: ${report.stats.connectedComponents}`);\n      console.log(`  Health Score: ${(100 - (report.stats.brokenCount / report.stats.totalLinks) * 100).toFixed(1)}%`);\n\n      const mostConnected = [...report.graph]\n        .sort((a, b) => (b.incoming.length + b.outgoing.length) - (a.incoming.length + a.outgoing.length))\n        .slice(0, 5);\n\n      console.log('\\n🌐 Most Connected Notes:');\n      for (const node of mostConnected) {\n        const total = node.incoming.length + node.outgoing.length;\n        console.log(`  ${node.note.relativePath} (${total} connections: ${node.incoming.length} in, ${node.outgoing.length} out)`);\n      }\n\n      const lonelyNotes = report.graph.filter((n) => n.incoming.length === 0 && n.outgoing.length === 0).slice(0, 5);\n      if (lonelyNotes.length > 0) {\n        console.log('\\n🔴 Orphan Notes:');\n        for (const node of lonelyNotes) {\n          console.log(`  ${node.note.relativePath}`);\n        }\n      }\n\n      console.log();\n    } catch (error) {\n      spinner.fail('Analysis failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram.parse();","import { readFile } from 'node:fs/promises';\nimport { resolve } from 'node:path';\nimport fg from 'fast-glob';\nimport matter from 'gray-matter';\nimport type { Note } from '../types/index.js';\n\nconst DEFAULT_IGNORE = [\n  '**/node_modules/**',\n  '**/.git/**',\n  '**/.obsidian/**',\n];\n\nexport async function loadVault(\n  vaultPath: string,\n  customIgnore: string[] = [],\n): Promise<Note[]> {\n  const absolutePath = resolve(vaultPath);\n\n  const files = await fg(['**/*.md', '**/*.canvas'], {\n    cwd: absolutePath,\n    ignore: [...DEFAULT_IGNORE, ...customIgnore],\n  });\n\n  const notes: Note[] = [];\n\n  for (const file of files) {\n    const fullPath = resolve(absolutePath, file);\n    const content = await readFile(fullPath, 'utf-8');\n    const parsed = matter(content);\n\n    const aliases: string[] = [];\n    if (parsed.data.aliases) {\n      if (Array.isArray(parsed.data.aliases)) {\n        aliases.push(...parsed.data.aliases.map(String));\n      } else if (typeof parsed.data.aliases === 'string') {\n        aliases.push(parsed.data.aliases);\n      }\n    }\n\n    notes.push({\n      path: fullPath,\n      relativePath: file,\n      content: parsed.content,\n      aliases,\n      links: [],\n    });\n  }\n\n  return notes;\n}\n\nexport function resolveFileName(notePath: string): string {\n  const base = notePath.replace(/\\.(md|canvas)$/, '');\n  const parts = base.split('/');\n  return parts[parts.length - 1]!;\n}\n","import type { Link } from '../types/index.js';\n\nconst wikiLinkRegex = /!?\\[\\[([^\\]]+)\\]\\]/g;\nconst markdownLinkRegex = /\\[([^\\]]*)\\]\\(([^)]+)\\)/g;\n\nexport function parseLinks(content: string): Link[] {\n  const links: Link[] = [];\n  const lines = content.split('\\n');\n\n  for (let lineNum = 0; lineNum < lines.length; lineNum++) {\n    const line = lines[lineNum]!;\n\n    for (const match of line.matchAll(wikiLinkRegex)) {\n      const raw = match[0]!;\n      const inner = match[1]!;\n      const isEmbed = raw.startsWith('!');\n\n      const link = parseWikiLink(inner, raw, isEmbed, lineNum + 1);\n      links.push(link);\n    }\n\n    for (const match of line.matchAll(markdownLinkRegex)) {\n      const raw = match[0]!;\n      const target = match[2]!;\n\n      if (target.startsWith('#')) continue;\n\n      const link: Link = {\n        raw,\n        target: target.split('#')[0]!.split('|')[0]!,\n        heading: target.includes('#') ? target.split('#')[1] : undefined,\n        type: 'markdown',\n        line: lineNum + 1,\n      };\n      links.push(link);\n    }\n  }\n\n  return links;\n}\n\nfunction parseWikiLink(inner: string, raw: string, isEmbed: boolean, line: number): Link {\n  const [targetPart, aliasPart] = inner.split('|');\n  const [target, ...rest] = targetPart!.split('#');\n\n  let heading: string | undefined;\n  let blockId: string | undefined;\n\n  if (rest.length > 0) {\n    const remainder = rest.join('#');\n    if (remainder.startsWith('^')) {\n      blockId = remainder.slice(1);\n    } else {\n      heading = remainder;\n    }\n  }\n\n  return {\n    raw,\n    target: target!.trim(),\n    alias: aliasPart?.trim(),\n    heading,\n    blockId,\n    type: isEmbed ? 'embed' : 'wiki',\n    line,\n  };\n}\n","import { existsSync } from 'node:fs';\nimport { resolve } from 'node:path';\nimport type { Note, GraphNode, BrokenLink, AnalysisReport } from '../types/index.js';\nimport { AliasResolver } from './alias-resolver.js';\nimport { buildGraph } from './graph-builder.js';\n\nconst ATTACHMENT_EXTENSIONS = new Set([\n  'png', 'jpg', 'jpeg', 'gif', 'svg', 'webp', 'bmp', 'ico',\n  'pdf', 'doc', 'docx', 'xls', 'xlsx', 'ppt', 'pptx',\n  'mp3', 'mp4', 'wav', 'avi', 'mov', 'webm',\n  'zip', 'rar', '7z', 'tar', 'gz',\n  'exe', 'dmg', 'apk',\n  'css', 'js', 'ts', 'html',\n  'txt', 'csv', 'log',\n  'woff', 'woff2', 'ttf', 'eot',\n]);\n\nfunction isAttachment(target: string): boolean {\n  const ext = target.split('.').pop()?.toLowerCase();\n  return ext ? ATTACHMENT_EXTENSIONS.has(ext) : false;\n}\n\nexport function analyze(\n  notes: Note[],\n  vaultPath: string,\n  checkAttachments = false,\n): AnalysisReport {\n  const resolver = new AliasResolver(notes);\n  const graph = buildGraph(notes, resolver);\n\n  const brokenLinks: BrokenLink[] = [];\n  const orphanNotes: Note[] = [];\n\n  for (const node of graph) {\n    if (node.incoming.length === 0 && node.outgoing.length === 0) {\n      orphanNotes.push(node.note);\n    }\n\n    for (const link of node.note.links) {\n      if (link.type === 'markdown' && !link.target.endsWith('.md')) {\n        continue;\n      }\n\n      if (!checkAttachments && isAttachment(link.target)) {\n        continue;\n      }\n\n      const resolvedPath = resolver.resolve(link.target);\n\n      if (resolvedPath === node.note.path) {\n        continue;\n      }\n\n      if (!resolvedPath) {\n        brokenLinks.push({\n          source: node.note.relativePath,\n          link,\n          reason: `Target \"${link.target}\" not found in vault`,\n        });\n      } else if (link.type === 'embed' || link.type === 'markdown') {\n        if (!existsSync(resolvedPath)) {\n          brokenLinks.push({\n            source: node.note.relativePath,\n            link,\n            reason: `File \"${link.target}\" does not exist`,\n          });\n        }\n      }\n    }\n  }\n\n  const connectedComponents = countConnectedComponents(graph);\n  const totalLinks = notes.reduce((sum, n) => sum + n.links.length, 0);\n\n  return {\n    brokenLinks,\n    orphanNotes,\n    graph,\n    stats: {\n      totalNotes: notes.length,\n      totalLinks,\n      brokenCount: brokenLinks.length,\n      orphanCount: orphanNotes.length,\n      connectedComponents,\n    },\n  };\n}\n\nfunction countConnectedComponents(graph: GraphNode[]): number {\n  if (graph.length === 0) return 0;\n\n  const visited = new Set<string>();\n  let components = 0;\n\n  const adjacency = new Map<string, string[]>();\n  for (const node of graph) {\n    adjacency.set(node.note.path, [...node.incoming, ...node.outgoing]);\n  }\n\n  for (const node of graph) {\n    if (visited.has(node.note.path)) continue;\n\n    components++;\n    const stack = [node.note.path];\n\n    while (stack.length > 0) {\n      const current = stack.pop()!;\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const neighbors = adjacency.get(current) || [];\n      for (const neighbor of neighbors) {\n        if (!visited.has(neighbor)) {\n          stack.push(neighbor);\n        }\n      }\n    }\n  }\n\n  return components;\n}\n","import type { Note } from '../types/index.js';\n\nexport class AliasResolver {\n  private aliasToNote: Map<string, string> = new Map();\n  private fileNameToNote: Map<string, string> = new Map();\n  private basenameToNote: Map<string, string> = new Map();\n\n  constructor(notes: Note[]) {\n    for (const note of notes) {\n      const fileName = note.relativePath.replace(/\\.(md|canvas)$/, '');\n      const basename = fileName.split('/').pop()!;\n\n      this.fileNameToNote.set(fileName.toLowerCase(), note.path);\n      this.basenameToNote.set(basename.toLowerCase(), note.path);\n\n      try {\n        this.fileNameToNote.set(decodeURIComponent(fileName).toLowerCase(), note.path);\n        this.basenameToNote.set(decodeURIComponent(basename).toLowerCase(), note.path);\n      } catch {\n        // skip malformed URIs\n      }\n\n      for (const alias of note.aliases) {\n        this.aliasToNote.set(alias.toLowerCase(), note.path);\n      }\n    }\n  }\n\n  resolve(target: string): string | null {\n    const normalized = target.toLowerCase().trim();\n\n    if (this.aliasToNote.has(normalized)) {\n      return this.aliasToNote.get(normalized)!;\n    }\n\n    if (this.fileNameToNote.has(normalized)) {\n      return this.fileNameToNote.get(normalized)!;\n    }\n\n    if (this.basenameToNote.has(normalized)) {\n      return this.basenameToNote.get(normalized)!;\n    }\n\n    const decoded = (() => {\n      try {\n        return decodeURIComponent(normalized);\n      } catch {\n        return normalized;\n      }\n    })();\n\n    if (this.aliasToNote.has(decoded)) {\n      return this.aliasToNote.get(decoded)!;\n    }\n    if (this.fileNameToNote.has(decoded)) {\n      return this.fileNameToNote.get(decoded)!;\n    }\n    if (this.basenameToNote.has(decoded)) {\n      return this.basenameToNote.get(decoded)!;\n    }\n\n    return null;\n  }\n}\n","import type { Note, GraphNode, Link } from '../types/index.js';\nimport { AliasResolver } from './alias-resolver.js';\n\nexport function buildGraph(notes: Note[], resolver: AliasResolver): GraphNode[] {\n  const notePathMap = new Map<string, GraphNode>();\n\n  for (const note of notes) {\n    notePathMap.set(note.path, {\n      note,\n      incoming: [],\n      outgoing: [],\n    });\n  }\n\n  for (const note of notes) {\n    const node = notePathMap.get(note.path)!;\n\n    for (const link of note.links) {\n      if (link.type === 'markdown' && !link.target.endsWith('.md')) {\n        continue;\n      }\n\n      const resolvedPath = resolver.resolve(link.target);\n\n      if (resolvedPath && notePathMap.has(resolvedPath)) {\n        if (!node.outgoing.includes(resolvedPath)) {\n          node.outgoing.push(resolvedPath);\n        }\n\n        const targetNode = notePathMap.get(resolvedPath)!;\n        if (!targetNode.incoming.includes(note.path)) {\n          targetNode.incoming.push(note.path);\n        }\n      }\n    }\n  }\n\n  return Array.from(notePathMap.values());\n}\n","import type { Note } from '../types/index.js';\r\n\r\nexport interface Suggestion {\r\n  broken: string;\r\n  suggested: string;\r\n  similarity: number;\r\n  source: string;\r\n}\r\n\r\nfunction levenshteinDistance(a: string, b: string): number {\r\n  const matrix: number[][] = Array(b.length + 1)\r\n    .fill(null)\r\n    .map(() => Array(a.length + 1).fill(0));\r\n\r\n  for (let i = 0; i <= a.length; i++) matrix[0]![i] = i;\r\n  for (let j = 0; j <= b.length; j++) matrix[j]![0] = j;\r\n\r\n  for (let j = 1; j <= b.length; j++) {\r\n    for (let i = 1; i <= a.length; i++) {\r\n      if (a[i - 1] === b[j - 1]) {\r\n        matrix[j]![i] = matrix[j - 1]![i - 1]!;\r\n      } else {\r\n        matrix[j]![i] = Math.min(\r\n          matrix[j]![i - 1]! + 1,\r\n          matrix[j - 1]![i]! + 1,\r\n          matrix[j - 1]![i - 1]! + 1,\r\n        );\r\n      }\r\n    }\r\n  }\r\n\r\n  return matrix[b.length]![a.length]!;\r\n}\r\n\r\nfunction calculateSimilarity(a: string, b: string): number {\r\n  const distance = levenshteinDistance(\r\n    a.toLowerCase(),\r\n    b.toLowerCase(),\r\n  );\r\n  const maxLen = Math.max(a.length, b.length);\r\n  return Math.max(0, 1 - distance / maxLen);\r\n}\r\n\r\nexport function generateSuggestions(\r\n  brokenTargets: string[],\r\n  allNotes: Note[],\r\n  threshold = 0.6,\r\n): Suggestion[] {\r\n  const availableNotes = allNotes.map((n) => ({\r\n    name: n.relativePath.replace(/\\.(md|canvas)$/, ''),\r\n    basename: n.relativePath.split('/').pop()?.replace(/\\.(md|canvas)$/, '') || '',\r\n    aliases: n.aliases,\r\n  }));\r\n\r\n  const suggestions: Suggestion[] = [];\r\n\r\n  for (const broken of brokenTargets) {\r\n    const brokenBasename = broken.split('/').pop() || broken;\r\n    const candidates: Array<{ suggestion: string; similarity: number }> = [];\r\n\r\n    for (const note of availableNotes) {\r\n      const basenameScore = calculateSimilarity(brokenBasename, note.basename);\r\n      const fullScore = calculateSimilarity(broken, note.name);\r\n\r\n      // Check aliases too\r\n      for (const alias of note.aliases) {\r\n        const aliasScore = calculateSimilarity(broken, alias);\r\n        if (aliasScore > basenameScore && aliasScore > fullScore) {\r\n          candidates.push({ suggestion: note.name, similarity: aliasScore });\r\n        }\r\n      }\r\n\r\n      if (basenameScore >= fullScore && basenameScore > threshold) {\r\n        candidates.push({ suggestion: note.name, similarity: basenameScore });\r\n      } else if (fullScore > threshold) {\r\n        candidates.push({ suggestion: note.name, similarity: fullScore });\r\n      }\r\n    }\r\n\r\n    // Sort by similarity and take top suggestion\r\n    if (candidates.length > 0) {\r\n      const best = candidates.sort((a, b) => b.similarity - a.similarity)[0]!;\r\n      suggestions.push({\r\n        broken,\r\n        suggested: best.suggestion,\r\n        similarity: best.similarity,\r\n        source: broken,\r\n      });\r\n    }\r\n  }\r\n\r\n  return suggestions.sort((a, b) => b.similarity - a.similarity);\r\n}\r\n","import { loadVault } from '../core/vault-loader.js';\nimport { parseLinks } from '../core/link-parser.js';\nimport { analyze } from '../core/analyzer.js';\nimport { generateSuggestions } from './suggestions.js';\nimport type { AnalysisReport, DeadLinksConfig } from '../types/index.js';\n\nexport class DeadLinksEngine {\n  async analyze(\n    vaultPath: string,\n    config: DeadLinksConfig = {},\n  ): Promise<AnalysisReport> {\n    const startTime = Date.now();\n\n    const notes = await loadVault(vaultPath, config.ignore);\n\n    // Parallelize link parsing\n    await Promise.all(\n      notes.map((note) => {\n        note.links = parseLinks(note.content);\n        return Promise.resolve();\n      }),\n    );\n\n    const report = analyze(notes, vaultPath, config.checkAttachments);\n\n    // Generate suggestions for broken links\n    if (config.suggestions) {\n      const brokenTargets = Array.from(\n        new Set(report.brokenLinks.map((b) => b.link.target)),\n      );\n      report.suggestions = generateSuggestions(brokenTargets, notes, 0.65);\n    }\n\n    report.duration = Date.now() - startTime;\n\n    return report;\n  }\n}\n","import { readFile, access } from 'node:fs/promises';\nimport { resolve, join } from 'node:path';\nimport type { DeadLinksConfig } from '../types/index.js';\n\nconst CONFIG_FILES = ['.deadlinksrc.json', '.deadlinksrc', 'dead-links.config.json'];\n\nexport class ConfigLoader {\n  async loadConfig(vaultPath: string): Promise<DeadLinksConfig> {\n    const absolutePath = resolve(vaultPath);\n\n    for (const configFile of CONFIG_FILES) {\n      const configPath = join(absolutePath, configFile);\n\n      try {\n        await access(configPath);\n        const content = await readFile(configPath, 'utf-8');\n        const parsed = JSON.parse(content) as DeadLinksConfig;\n\n        if (parsed.ignore && !Array.isArray(parsed.ignore)) {\n          continue;\n        }\n        if (parsed.ignoreFolders && !Array.isArray(parsed.ignoreFolders)) {\n          continue;\n        }\n\n        return parsed;\n      } catch {\n        continue;\n      }\n    }\n\n    return {};\n  }\n\n  mergeConfig(\n    fileConfig: DeadLinksConfig,\n    cliOptions: Record<string, unknown>,\n  ): DeadLinksConfig {\n    return {\n      ignore: (cliOptions.ignore as string[] | undefined) || fileConfig.ignore,\n      checkAttachments:\n        (cliOptions.attachments as boolean | undefined) ??\n        fileConfig.checkAttachments ??\n        false,\n      ignoreFolders:\n        (cliOptions.ignoreFolders as string[] | undefined) ||\n        fileConfig.ignoreFolders,\n      suggestions:\n        (cliOptions.suggestions as boolean | undefined) ??\n        fileConfig.suggestions ??\n        false,\n      debug:\n        (cliOptions.debug as boolean | undefined) ??\n        fileConfig.debug ??\n        false,\n      fix:\n        (cliOptions.fix as boolean | undefined) ??\n        fileConfig.fix ??\n        false,\n    };\n  }\n}\n","import chalk from 'chalk';\nimport type {\n  AnalysisReport,\n  BrokenLink,\n  Note,\n} from '../types/index.js';\n\nexport class TerminalReporter {\n  private ignoreFolders: string[];\n  private quiet: boolean;\n\n  constructor(ignoreFolders: string[] = [], quiet = false) {\n    this.ignoreFolders = ignoreFolders;\n    this.quiet = quiet;\n  }\n\n  report(result: AnalysisReport): string {\n    if (this.quiet) {\n      return this.reportQuiet(result);\n    }\n\n    let output = '';\n    output += this.printStats(result);\n    output += this.printBrokenLinks(result.brokenLinks);\n    output += this.printOrphanNotes(result.orphanNotes);\n    if (result.suggestions && result.suggestions.length > 0) {\n      output += this.printSuggestions(result.suggestions);\n    }\n    output += this.printDuration(result.duration);\n    return output;\n  }\n\n  private reportQuiet(result: AnalysisReport): string {\n    const lines: string[] = [];\n\n    for (const broken of result.brokenLinks) {\n      lines.push(`${broken.source} -> ${broken.link.target}`);\n    }\n\n    for (const note of result.orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n      if (this.ignoreFolders.some((f) => folder.startsWith(f + '/') || folder === f + '/')) {\n        continue;\n      }\n      lines.push(`orphan: ${note.relativePath}`);\n    }\n\n    return lines.join('\\n');\n  }\n\n  private printStats(report: AnalysisReport): string {\n    const pad = 14;\n    let out = '\\n';\n    out += this.statLine('Notes'.padEnd(pad), String(report.stats.totalNotes));\n    out += this.statLine('Links'.padEnd(pad), String(report.stats.totalLinks));\n    out += this.statLine('Broken links'.padEnd(pad), String(report.stats.brokenCount), 'red');\n    out += this.statLine('Orphan notes'.padEnd(pad), String(report.stats.orphanCount), 'yellow');\n    out += this.statLine('Components'.padEnd(pad), String(report.stats.connectedComponents));\n    out += '\\n';\n    return out;\n  }\n\n  private statLine(label: string, value: string, color: 'red' | 'yellow' | 'white' = 'white'): string {\n    return `  ${chalk.gray(label)}  ${color === 'red' ? chalk.red.bold(value) : color === 'yellow' ? chalk.yellow.bold(value) : chalk.white.bold(value)}\\n`;\n  }\n\n  private printBrokenLinks(brokenLinks: BrokenLink[]): string {\n    if (brokenLinks.length === 0) {\n      return chalk.green('  ✓  No broken links\\n\\n');\n    }\n\n    const grouped = new Map<string, BrokenLink[]>();\n    for (const broken of brokenLinks) {\n      const existing = grouped.get(broken.source) || [];\n      existing.push(broken);\n      grouped.set(broken.source, existing);\n    }\n\n    const sorted = [...grouped.entries()].sort((a, b) => b[1].length - a[1].length);\n\n    let out = chalk.bold.red(`\\n✖  Broken links (${brokenLinks.length})\\n\\n`);\n\n    for (const [source, links] of sorted) {\n      const count = links.length;\n      const isMultiple = count >= 2;\n\n      const countStr = isMultiple ? chalk.red.bold(`✖  ${count}`) : chalk.yellow.bold(`✖  ${count}`);\n      out += `  ${countStr}  ${chalk.white.bold(source)}\\n`;\n\n      for (const link of links) {\n        const pill = isMultiple\n          ? chalk.redBright(`[${link.link.target}]`)\n          : chalk.yellowBright(`[${link.link.target}]`);\n        out += `      ${pill}\\n`;\n      }\n      out += '\\n';\n    }\n\n    return out;\n  }\n\n  private printOrphanNotes(orphanNotes: Note[]): string {\n    if (orphanNotes.length === 0) {\n      return chalk.green('  ✓  No orphan notes\\n\\n');\n    }\n\n    const byFolder = new Map<string, number>();\n    for (const note of orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n\n      if (this.ignoreFolders.some((f) => folder.startsWith(f + '/') || folder === f + '/')) {\n        continue;\n      }\n\n      byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n    }\n\n    const sorted = [...byFolder.entries()].sort((a, b) => b[1] - a[1]);\n\n    if (sorted.length === 0) {\n      return chalk.green('  ✓  No orphan notes (all in ignored folders)\\n\\n');\n    }\n\n    const maxCount = sorted[0]![1];\n    const barWidth = 10;\n\n    let out = chalk.bold.yellow(`\\n⚠  Orphan notes (${orphanNotes.length} total)\\n\\n`);\n\n    for (const [folder, count] of sorted) {\n      const filled = Math.round((count / maxCount) * barWidth);\n      const empty = barWidth - filled;\n      const bar = chalk.gray('█'.repeat(filled) + '░'.repeat(empty));\n      out += `  ${chalk.gray(folder.padEnd(40))}  ${bar}  ${chalk.white.bold(String(count))}\\n`;\n    }\n\n    out += '\\n';\n    return out;\n  }\n\n  private printDuration(ms: number): string {\n    return chalk.dim(`  Completed in ${ms}ms\\n`);\n  }\n\n  private printSuggestions(\n    suggestions: Array<{ broken: string; suggested: string; similarity: number }>,\n  ): string {\n    let out = chalk.bold.cyan(`\\n💡 Suggestions (${suggestions.length})\\n\\n`);\n\n    for (const suggestion of suggestions.slice(0, 5)) {\n      const confidence = Math.round(suggestion.similarity * 100);\n      const bar =\n        confidence >= 80\n          ? chalk.green('█████')\n          : confidence >= 60\n            ? chalk.yellow('█████')\n            : chalk.gray('█████');\n\n      out += `  ${chalk.gray(suggestion.broken)} → ${chalk.cyan(suggestion.suggested)}\\n`;\n      out += `      ${bar} ${confidence}%\\n\\n`;\n    }\n\n    return out;\n  }\n}\n","import type { AnalysisReport } from '../types/index.js';\n\nexport class JsonReporter {\n  report(result: AnalysisReport): string {\n    return JSON.stringify(\n      {\n        stats: result.stats,\n        brokenLinks: result.brokenLinks,\n        orphanNotes: result.orphanNotes.map((n) => ({\n          path: n.relativePath,\n        })),\n        graph: result.graph.map((n) => ({\n          note: n.note.relativePath,\n          incoming: n.incoming.length,\n          outgoing: n.outgoing.length,\n        })),\n        duration: result.duration,\n      },\n      null,\n      2,\n    );\n  }\n}\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class CsvReporter {\r\n  report(result: AnalysisReport): string {\r\n    const lines: string[] = [];\r\n\r\n    // Broken Links CSV\r\n    lines.push('# BROKEN LINKS');\r\n    lines.push('Source,Target,Type,Line,Reason');\r\n\r\n    for (const broken of result.brokenLinks) {\r\n      const source = this.escapeCsv(broken.source);\r\n      const target = this.escapeCsv(broken.link.target);\r\n      const type = broken.link.type;\r\n      const line = broken.link.line;\r\n      const reason = this.escapeCsv(broken.reason);\r\n\r\n      lines.push(`${source},${target},${type},${line},\"${reason}\"`);\r\n    }\r\n\r\n    // Orphan Notes CSV\r\n    lines.push('\\n# ORPHAN NOTES');\r\n    lines.push('Note,Path');\r\n\r\n    for (const orphan of result.orphanNotes) {\r\n      const name = this.escapeCsv(orphan.relativePath);\r\n      lines.push(`${name},\"${name}\"`);\r\n    }\r\n\r\n    // Graph Stats CSV\r\n    lines.push('\\n# GRAPH STATISTICS');\r\n    lines.push('Metric,Value');\r\n    lines.push(`Total Notes,${result.stats.totalNotes}`);\r\n    lines.push(`Total Links,${result.stats.totalLinks}`);\r\n    lines.push(`Broken Links,${result.stats.brokenCount}`);\r\n    lines.push(`Orphan Notes,${result.stats.orphanCount}`);\r\n    lines.push(`Connected Components,${result.stats.connectedComponents}`);\r\n    lines.push(`Duration (ms),${result.duration}`);\r\n\r\n    return lines.join('\\n');\r\n  }\r\n\r\n  private escapeCsv(value: string): string {\r\n    if (value.includes(',') || value.includes('\"') || value.includes('\\n')) {\r\n      return `\"${value.replace(/\"/g, '\"\"')}\"`;\r\n    }\r\n    return value;\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class HtmlReporter {\r\n  report(result: AnalysisReport): string {\r\n    const brokenLinksHtml = this.renderBrokenLinks(result.brokenLinks);\r\n    const orphanNotesHtml = this.renderOrphanNotes(result.orphanNotes);\r\n    const graphHtml = this.renderGraph(result.graph);\r\n    const statsHtml = this.renderStats(result.stats, result.duration);\r\n\r\n    return `<!DOCTYPE html>\r\n<html lang=\"en\">\r\n<head>\r\n    <meta charset=\"UTF-8\">\r\n    <meta name=\"viewport\" content=\"width=device-width, initial-scale=1.0\">\r\n    <title>Dead Links Report</title>\r\n    <style>\r\n        * { margin: 0; padding: 0; box-sizing: border-box; }\r\n        body {\r\n            font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, sans-serif;\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            min-height: 100vh;\r\n            padding: 20px;\r\n        }\r\n        .container {\r\n            max-width: 1400px;\r\n            margin: 0 auto;\r\n            background: white;\r\n            border-radius: 12px;\r\n            box-shadow: 0 20px 60px rgba(0,0,0,0.3);\r\n            overflow: hidden;\r\n        }\r\n        header {\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            color: white;\r\n            padding: 40px;\r\n            text-align: center;\r\n        }\r\n        header h1 { font-size: 2.5em; margin-bottom: 10px; }\r\n        header p { font-size: 1.1em; opacity: 0.9; }\r\n        .content { padding: 40px; }\r\n        .section {\r\n            margin-bottom: 40px;\r\n            border-left: 4px solid #667eea;\r\n            padding-left: 20px;\r\n        }\r\n        .section h2 {\r\n            font-size: 1.8em;\r\n            margin-bottom: 20px;\r\n            color: #333;\r\n        }\r\n        .stats-grid {\r\n            display: grid;\r\n            grid-template-columns: repeat(auto-fit, minmax(200px, 1fr));\r\n            gap: 20px;\r\n            margin-bottom: 40px;\r\n        }\r\n        .stat-card {\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            color: white;\r\n            padding: 20px;\r\n            border-radius: 8px;\r\n            text-align: center;\r\n        }\r\n        .stat-card .value { font-size: 2.5em; font-weight: bold; }\r\n        .stat-card .label { font-size: 0.9em; opacity: 0.9; margin-top: 10px; }\r\n        table {\r\n            width: 100%;\r\n            border-collapse: collapse;\r\n            margin-top: 20px;\r\n        }\r\n        th {\r\n            background: #f5f5f5;\r\n            padding: 12px;\r\n            text-align: left;\r\n            border-bottom: 2px solid #667eea;\r\n            font-weight: 600;\r\n        }\r\n        td {\r\n            padding: 12px;\r\n            border-bottom: 1px solid #eee;\r\n        }\r\n        tr:hover { background: #f9f9f9; }\r\n        .badge {\r\n            display: inline-block;\r\n            padding: 4px 8px;\r\n            border-radius: 4px;\r\n            font-size: 0.85em;\r\n            font-weight: 500;\r\n        }\r\n        .badge-wiki { background: #dbeafe; color: #1e40af; }\r\n        .badge-embed { background: #fed7aa; color: #92400e; }\r\n        .badge-markdown { background: #d1fae5; color: #065f46; }\r\n        .error { color: #dc2626; }\r\n        .success { color: #16a34a; }\r\n        .tabs {\r\n            display: flex;\r\n            gap: 0;\r\n            border-bottom: 2px solid #eee;\r\n            margin-bottom: 20px;\r\n        }\r\n        .tab-button {\r\n            padding: 12px 20px;\r\n            border: none;\r\n            background: none;\r\n            cursor: pointer;\r\n            font-size: 1em;\r\n            border-bottom: 3px solid transparent;\r\n            color: #666;\r\n            transition: all 0.3s;\r\n        }\r\n        .tab-button.active {\r\n            color: #667eea;\r\n            border-bottom-color: #667eea;\r\n        }\r\n        .tab-content { display: none; }\r\n        .tab-content.active { display: block; }\r\n        .filter-box {\r\n            margin: 20px 0;\r\n            padding: 15px;\r\n            background: #f9f9f9;\r\n            border-radius: 8px;\r\n        }\r\n        .filter-box input {\r\n            width: 100%;\r\n            padding: 8px;\r\n            border: 1px solid #ddd;\r\n            border-radius: 4px;\r\n            font-size: 1em;\r\n        }\r\n        footer {\r\n            background: #f5f5f5;\r\n            padding: 20px;\r\n            text-align: center;\r\n            color: #666;\r\n            font-size: 0.9em;\r\n        }\r\n    </style>\r\n</head>\r\n<body>\r\n    <div class=\"container\">\r\n        <header>\r\n            <h1>🔍 Dead Links Report</h1>\r\n            <p>Obsidian Vault Analysis</p>\r\n        </header>\r\n\r\n        <div class=\"content\">\r\n            ${statsHtml}\r\n            ${brokenLinksHtml}\r\n            ${orphanNotesHtml}\r\n            ${graphHtml}\r\n        </div>\r\n\r\n        <footer>\r\n            Generated on ${new Date().toLocaleString()}\r\n        </footer>\r\n    </div>\r\n\r\n    <script>\r\n        function setupTabs() {\r\n            const buttons = document.querySelectorAll('.tab-button');\r\n            const contents = document.querySelectorAll('.tab-content');\r\n\r\n            buttons.forEach((button, index) => {\r\n                button.addEventListener('click', () => {\r\n                    buttons.forEach(b => b.classList.remove('active'));\r\n                    contents.forEach(c => c.classList.remove('active'));\r\n                    button.classList.add('active');\r\n                    contents[index].classList.add('active');\r\n                });\r\n            });\r\n\r\n            // Activate first tab\r\n            if (buttons.length > 0) buttons[0].classList.add('active');\r\n            if (contents.length > 0) contents[0].classList.add('active');\r\n        }\r\n\r\n        function setupFilter(tableId, inputId) {\r\n            const input = document.getElementById(inputId);\r\n            const table = document.getElementById(tableId);\r\n            if (!input || !table) return;\r\n\r\n            input.addEventListener('keyup', (e) => {\r\n                const filter = e.target.value.toLowerCase();\r\n                const rows = table.querySelectorAll('tbody tr');\r\n                rows.forEach(row => {\r\n                    const text = row.textContent.toLowerCase();\r\n                    row.style.display = text.includes(filter) ? '' : 'none';\r\n                });\r\n            });\r\n        }\r\n\r\n        document.addEventListener('DOMContentLoaded', () => {\r\n            setupTabs();\r\n            setupFilter('broken-table', 'broken-filter');\r\n            setupFilter('orphan-table', 'orphan-filter');\r\n        });\r\n    </script>\r\n</body>\r\n</html>`;\r\n  }\r\n\r\n  private renderStats(\r\n    stats: {\r\n      totalNotes: number;\r\n      totalLinks: number;\r\n      brokenCount: number;\r\n      orphanCount: number;\r\n      connectedComponents: number;\r\n    },\r\n    duration: number,\r\n  ): string {\r\n    const healthColor =\r\n      stats.brokenCount === 0 && stats.orphanCount === 0 ? '#16a34a' : '#dc2626';\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>📊 Overview</h2>\r\n            <div class=\"stats-grid\">\r\n                <div class=\"stat-card\">\r\n                    <div class=\"value\">${stats.totalNotes}</div>\r\n                    <div class=\"label\">Total Notes</div>\r\n                </div>\r\n                <div class=\"stat-card\">\r\n                    <div class=\"value\">${stats.totalLinks}</div>\r\n                    <div class=\"label\">Total Links</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #dc2626 0%, #991b1b 100%);\">\r\n                    <div class=\"value\">${stats.brokenCount}</div>\r\n                    <div class=\"label\">Broken Links</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #f59e0b 0%, #d97706 100%);\">\r\n                    <div class=\"value\">${stats.orphanCount}</div>\r\n                    <div class=\"label\">Orphan Notes</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, ${healthColor} 0%, ${healthColor === '#16a34a' ? '#15803d' : '#991b1b'} 100%);\">\r\n                    <div class=\"value\">${stats.connectedComponents}</div>\r\n                    <div class=\"label\">Connected Components</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #8b5cf6 0%, #6d28d9 100%);\">\r\n                    <div class=\"value\">${duration}ms</div>\r\n                    <div class=\"label\">Scan Duration</div>\r\n                </div>\r\n            </div>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderBrokenLinks(brokenLinks: any[]): string {\r\n    if (brokenLinks.length === 0) {\r\n      return `\r\n        <div class=\"section\">\r\n            <h2>✅ Broken Links</h2>\r\n            <p class=\"success\">No broken links found!</p>\r\n        </div>\r\n      `;\r\n    }\r\n\r\n    const rows = brokenLinks\r\n      .map(\r\n        (link) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(link.source)}</td>\r\n            <td>${this.escapeHtml(link.link.target)}</td>\r\n            <td><span class=\"badge badge-${link.link.type}\">${link.link.type}</span></td>\r\n            <td>${link.link.line}</td>\r\n            <td>${this.escapeHtml(link.reason)}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🔴 Broken Links (${brokenLinks.length})</h2>\r\n            <div class=\"filter-box\">\r\n                <input type=\"text\" id=\"broken-filter\" placeholder=\"Filter by source or target...\" />\r\n            </div>\r\n            <table id=\"broken-table\">\r\n                <thead>\r\n                    <tr>\r\n                        <th>Source</th>\r\n                        <th>Target</th>\r\n                        <th>Type</th>\r\n                        <th>Line</th>\r\n                        <th>Reason</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderOrphanNotes(orphanNotes: any[]): string {\r\n    if (orphanNotes.length === 0) {\r\n      return `\r\n        <div class=\"section\">\r\n            <h2>✅ Orphan Notes</h2>\r\n            <p class=\"success\">No orphan notes found!</p>\r\n        </div>\r\n      `;\r\n    }\r\n\r\n    const rows = orphanNotes\r\n      .map(\r\n        (note) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(note.relativePath)}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🟡 Orphan Notes (${orphanNotes.length})</h2>\r\n            <div class=\"filter-box\">\r\n                <input type=\"text\" id=\"orphan-filter\" placeholder=\"Filter by path...\" />\r\n            </div>\r\n            <table id=\"orphan-table\">\r\n                <thead>\r\n                    <tr>\r\n                        <th>Path</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderGraph(graph: any[]): string {\r\n    const mostConnected = [...graph]\r\n      .sort((a, b) => (b.incoming.length + b.outgoing.length) - (a.incoming.length + a.outgoing.length))\r\n      .slice(0, 5);\r\n\r\n    const rows = mostConnected\r\n      .map(\r\n        (node) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(node.note.relativePath)}</td>\r\n            <td>${node.incoming.length}</td>\r\n            <td>${node.outgoing.length}</td>\r\n            <td>${node.incoming.length + node.outgoing.length}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🌐 Most Connected Notes</h2>\r\n            <table>\r\n                <thead>\r\n                    <tr>\r\n                        <th>Note</th>\r\n                        <th>Incoming</th>\r\n                        <th>Outgoing</th>\r\n                        <th>Total</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private escapeHtml(text: string): string {\r\n    return text\r\n      .replace(/&/g, '&amp;')\r\n      .replace(/</g, '&lt;')\r\n      .replace(/>/g, '&gt;')\r\n      .replace(/\"/g, '&quot;')\r\n      .replace(/'/g, '&#039;');\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class MermaidReporter {\r\n  report(result: AnalysisReport, maxNodes = 50): string {\r\n    let output = 'graph LR\\n';\r\n\r\n    // Limit nodes for readability\r\n    const nodesToShow = result.graph.slice(0, maxNodes);\r\n    const nodeMap = new Map(nodesToShow.map((n) => [n.note.path, n.note.relativePath]));\r\n\r\n    // Add nodes\r\n    for (const node of nodesToShow) {\r\n      const id = this.sanitizeId(node.note.relativePath);\r\n      const label = this.escapeLabel(node.note.relativePath);\r\n\r\n      if (result.orphanNotes.some((o) => o.path === node.note.path)) {\r\n        output += `  ${id}[\"<b>🔴 ${label}</b>\"]:::orphan\\n`;\r\n      } else if (node.incoming.length === 0) {\r\n        output += `  ${id}[\"📄 ${label}\"]:::source\\n`;\r\n      } else if (node.outgoing.length === 0) {\r\n        output += `  ${id}[\"📌 ${label}\"]:::sink\\n`;\r\n      } else {\r\n        output += `  ${id}[\"${label}\"]\\n`;\r\n      }\r\n    }\r\n\r\n    // Add edges\r\n    const addedEdges = new Set<string>();\r\n    for (const node of nodesToShow) {\r\n      const sourceId = this.sanitizeId(node.note.relativePath);\r\n\r\n      for (const targetPath of node.outgoing) {\r\n        const targetName = nodeMap.get(targetPath);\r\n        if (!targetName) continue;\r\n\r\n        const targetId = this.sanitizeId(targetName);\r\n        const edgeKey = `${sourceId}-${targetId}`;\r\n\r\n        if (!addedEdges.has(edgeKey)) {\r\n          output += `  ${sourceId} --> ${targetId}\\n`;\r\n          addedEdges.add(edgeKey);\r\n        }\r\n      }\r\n    }\r\n\r\n    // Add styling\r\n    output += '\\n  classDef orphan fill:#ff6b6b,stroke:#c92a2a,color:#fff\\n';\r\n    output += '  classDef source fill:#4dabf7,stroke:#1971c2,color:#fff\\n';\r\n    output += '  classDef sink fill:#51cf66,stroke:#2f9e44,color:#fff\\n';\r\n\r\n    if (result.graph.length > maxNodes) {\r\n      output += `\\n  note[\"Graph limited to ${maxNodes} of ${result.graph.length} nodes for readability\"]\\n`;\r\n    }\r\n\r\n    return output;\r\n  }\r\n\r\n  private sanitizeId(name: string): string {\r\n    return name\r\n      .replace(/\\.(md|canvas)$/, '')\r\n      .replace(/[^a-zA-Z0-9_]/g, '_')\r\n      .substring(0, 30);\r\n  }\r\n\r\n  private escapeLabel(name: string): string {\r\n    return name.replace(/\"/g, '\\\\\"').substring(0, 50);\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class GraphVizReporter {\r\n  report(result: AnalysisReport, maxNodes = 100): string {\r\n    let output = 'digraph VaultGraph {\\n';\r\n    output += '  rankdir=LR;\\n';\r\n    output += '  node [shape=box, style=rounded];\\n';\r\n    output += '  edge [arrowsize=0.5];\\n\\n';\r\n\r\n    const nodesToShow = result.graph.slice(0, maxNodes);\r\n    const nodeMap = new Map(nodesToShow.map((n) => [n.note.path, n.note.relativePath]));\r\n\r\n    // Add nodes with styling\r\n    for (const node of nodesToShow) {\r\n      const id = this.sanitizeId(node.note.relativePath);\r\n      const label = node.note.relativePath;\r\n      let style = 'filled';\r\n      let color = '#ffffff';\r\n      let fontColor = '#000000';\r\n      let shape = 'box';\r\n\r\n      if (result.orphanNotes.some((o) => o.path === node.note.path)) {\r\n        color = '#ff6b6b';\r\n        fontColor = '#ffffff';\r\n        shape = 'box';\r\n      } else if (node.incoming.length === 0) {\r\n        color = '#4dabf7';\r\n        fontColor = '#ffffff';\r\n      } else if (node.outgoing.length === 0) {\r\n        color = '#51cf66';\r\n        fontColor = '#ffffff';\r\n      }\r\n\r\n      output += `  \"${id}\" [label=\"${label}\", fillcolor=\"${color}\", fontcolor=\"${fontColor}\", shape=${shape}];\\n`;\r\n    }\r\n\r\n    output += '\\n';\r\n\r\n    // Add edges\r\n    const addedEdges = new Set<string>();\r\n    for (const node of nodesToShow) {\r\n      const sourceId = this.sanitizeId(node.note.relativePath);\r\n\r\n      for (const targetPath of node.outgoing) {\r\n        const targetName = nodeMap.get(targetPath);\r\n        if (!targetName) continue;\r\n\r\n        const targetId = this.sanitizeId(targetName);\r\n        const edgeKey = `${sourceId}->${targetId}`;\r\n\r\n        if (!addedEdges.has(edgeKey)) {\r\n          output += `  \"${sourceId}\" -> \"${targetId}\";\\n`;\r\n          addedEdges.add(edgeKey);\r\n        }\r\n      }\r\n    }\r\n\r\n    output += '\\n  // Legend\\n';\r\n    output += '  subgraph legend {\\n';\r\n    output += '    rank=sink;\\n';\r\n    output += '    orphan [label=\"🔴 Orphan\", fillcolor=\"#ff6b6b\", fontcolor=\"white\"];\\n';\r\n    output += '    source [label=\"📄 Source (no incoming)\", fillcolor=\"#4dabf7\", fontcolor=\"white\"];\\n';\r\n    output += '    sink [label=\"📌 Sink (no outgoing)\", fillcolor=\"#51cf66\", fontcolor=\"white\"];\\n';\r\n    output += '  }\\n';\r\n\r\n    output += '}\\n';\r\n\r\n    return output;\r\n  }\r\n\r\n  private sanitizeId(name: string): string {\r\n    return name.replace(/\\.(md|canvas)$/, '').replace(/[^a-zA-Z0-9_]/g, '_');\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\n\nfunction pill(target: string, isMultiple: boolean): string {\n  return isMultiple ? `[${target}]` : `[${target}]`;\n}\n\nfunction bar(count: number, max: number, width: number): string {\n  const filled = Math.round((count / max) * width);\n  const empty = width - filled;\n  return '█'.repeat(filled) + '░'.repeat(empty);\n}\n\nexport function generateMarkdownReport(report: AnalysisReport): string {\n  const lines: string[] = [];\n\n  lines.push('# Dead Links Report');\n  lines.push('');\n  lines.push(`Generated: ${new Date().toISOString()}`);\n  lines.push(`Completed in ${report.duration}ms`);\n  lines.push('');\n\n  lines.push('## Stats');\n  lines.push('');\n  lines.push(`| Metric | Value |`);\n  lines.push(`|--------|-------|`);\n  lines.push(`| Notes | ${report.stats.totalNotes} |`);\n  lines.push(`| Links | ${report.stats.totalLinks} |`);\n  lines.push(`| Broken | ${report.stats.brokenCount} |`);\n  lines.push(`| Orphans | ${report.stats.orphanCount} |`);\n  lines.push(`| Components | ${report.stats.connectedComponents} |`);\n  lines.push('');\n\n  lines.push('## Broken Links');\n  lines.push('');\n\n  if (report.brokenLinks.length === 0) {\n    lines.push('No broken links found.');\n  } else {\n    const grouped = new Map<string, typeof report.brokenLinks>();\n    for (const b of report.brokenLinks) {\n      const existing = grouped.get(b.source) || [];\n      existing.push(b);\n      grouped.set(b.source, existing);\n    }\n\n    const sorted = [...grouped.entries()].sort((a, b) => b[1].length - a[1].length);\n\n    for (const [source, links] of sorted) {\n      const count = links.length;\n      lines.push(`### ${count > 1 ? '✖' : '✖'} ${count}  ${source}`);\n      lines.push('');\n      for (const link of links) {\n        lines.push(`- ${pill(link.link.target, count > 1)}`);\n      }\n      lines.push('');\n    }\n  }\n\n  lines.push('## Orphan Notes');\n  lines.push('');\n\n  if (report.orphanNotes.length === 0) {\n    lines.push('No orphan notes found.');\n  } else {\n    const byFolder = new Map<string, number>();\n    for (const note of report.orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n      byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n    }\n\n    const sorted = [...byFolder.entries()].sort((a, b) => b[1] - a[1]);\n    const maxCount = sorted[0]?.[1] ?? 1;\n\n    for (const [folder, count] of sorted) {\n      lines.push(`- ${folder.padEnd(40)}  ${bar(count, maxCount, 10)}  ${count}`);\n    }\n  }\n\n  lines.push('');\n\n  return 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+{"version":3,"sources":["../src/index.ts","../src/core/vault-loader.ts","../src/core/link-parser.ts","../src/core/analyzer.ts","../src/core/alias-resolver.ts","../src/core/link-resolver.ts","../src/core/graph-builder.ts","../src/utils/suggestions.ts","../src/utils/engine.ts","../src/utils/config-loader.ts","../src/reporters/terminal-reporter.ts","../src/reporters/json-reporter.ts","../src/reporters/csv-reporter.ts","../src/reporters/html-reporter.ts","../src/reporters/mermaid-reporter.ts","../src/reporters/graphviz-reporter.ts","../src/utils/markdown-report.ts","../src/utils/auto-fixer.ts"],"sourcesContent":["import { Command } from 'commander';\nimport { readFileSync } from 'node:fs';\nimport { writeFile } from 'node:fs/promises';\nimport ora from 'ora';\nimport { DeadLinksEngine } from './utils/engine.js';\nimport { ConfigLoader } from './utils/config-loader.js';\nimport { TerminalReporter } from './reporters/terminal-reporter.js';\nimport { JsonReporter } from './reporters/json-reporter.js';\nimport { CsvReporter } from './reporters/csv-reporter.js';\nimport { HtmlReporter } from './reporters/html-reporter.js';\nimport { MermaidReporter } from './reporters/mermaid-reporter.js';\nimport { GraphVizReporter } from './reporters/graphviz-reporter.js';\nimport { generateMarkdownReport } from './utils/markdown-report.js';\nimport { fixBrokenLinksBatch } from './utils/auto-fixer.js';\nimport { Chalk } from 'chalk';\n\nconst packageMetadata = JSON.parse(\n  readFileSync(new URL('../package.json', import.meta.url), 'utf8'),\n) as { version: string };\nimport type { BrokenLink, Note } from './types/index.js';\n\nconst program = new Command();\n\nprogram\n  .name('dead-links')\n  .description('Scan Obsidian vaults for broken links, orphan notes, and connection graphs')\n  .version(packageMetadata.version);\n\nasync function loadConfigAndAnalyze(\n  vaultPath: string,\n  cliOptions: Record<string, unknown>,\n) {\n  const configLoader = new ConfigLoader();\n  const fileConfig = await configLoader.loadConfig(vaultPath);\n  const config = configLoader.mergeConfig(fileConfig, cliOptions);\n\n  const engine = new DeadLinksEngine();\n  return engine.analyze(vaultPath, config);\n}\n\nfunction printBrokenVerbose(brokenLinks: BrokenLink[]) {\n  const grouped = new Map<string, BrokenLink[]>();\n  for (const b of brokenLinks) {\n    const existing = grouped.get(b.source) || [];\n    existing.push(b);\n    grouped.set(b.source, existing);\n  }\n\n  for (const [source, links] of grouped) {\n    for (const link of links) {\n      console.log(`  ${source}  →  ${link.link.target}  (line ${link.link.line})`);\n    }\n  }\n}\n\nfunction printOrphansVerbose(orphanNotes: Note[]) {\n  for (const note of orphanNotes) {\n    console.log(`  ${note.relativePath}`);\n  }\n}\n\nprogram\n  .command('scan')\n  .description('Scan the vault for all issues')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--format <type>', 'Output format: text, json, markdown, csv, html, mermaid, dot', 'text')\n  .option('--output <file>', 'Output file path')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--attachments', 'Also check embedded attachments (images, PDFs, etc.)')\n  .option('--ignore-folders <folders...>', 'Exclude folders from orphan report')\n  .option('--quiet', 'Only show issues, no stats or summary')\n  .option('--no-color', 'Disable colored output')\n  .option('--suggestions', 'Show smart suggestions for broken links')\n  .option('--debug', 'Enable debug mode with verbose output')\n  .option('--fix', 'Automatically fix broken links (requires suggestions)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      let fixSummary = '';\n      if (options.fix) {\n        const suggestionMap = new Map(\n          (report.suggestions || []).map((suggestion) => [suggestion.broken, suggestion.suggested]),\n        );\n        const fixResults = await fixBrokenLinksBatch(report.brokenLinks, suggestionMap, options.vault);\n        const changed = [...fixResults.values()].flat().filter((result) => result.success).length;\n        const failed = [...fixResults.values()].flat().filter((result) => !result.success).length;\n        const fixSummary = `Auto-fix: ${changed} link(s) changed${failed > 0 ? `, ${failed} failed` : ''}.`;\n        console.error(fixSummary);\n      }\n\n      if (options.debug) {\n        console.log(`[DEBUG] Vault: ${options.vault}`);\n        console.log(`[DEBUG] Format: ${options.format}`);\n        console.log(`[DEBUG] Broken links: ${report.stats.brokenCount}`);\n        console.log(`[DEBUG] Orphan notes: ${report.stats.orphanCount}`);\n      }\n\n      let output = '';\n\n      if (options.format === 'json') {\n        const reporter = new JsonReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'markdown') {\n        output = generateMarkdownReport(report);\n      } else if (options.format === 'csv') {\n        const reporter = new CsvReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'html') {\n        const reporter = new HtmlReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'mermaid') {\n        const reporter = new MermaidReporter();\n        output = reporter.report(report);\n      } else if (options.format === 'dot') {\n        const reporter = new GraphVizReporter();\n        output = reporter.report(report);\n      } else {\n        const reporter = new TerminalReporter(\n          options.ignoreFolders || [],\n          options.quiet || false,\n          options.color === false,\n        );\n        output = reporter.report(report);\n      }\n\n      if (options.output) {\n        await writeFile(options.output, output);\n        console.log(`Report written to ${options.output}`);\n      } else if (options.format === 'text') {\n        console.log(output);\n      } else {\n        console.log(output);\n      }\n\n      process.exit(report.stats.brokenCount > 0 || report.stats.orphanCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('broken')\n  .description('Show only broken links')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--attachments', 'Also check embedded attachments (images, PDFs, etc.)')\n  .option('--verbose', 'Show line numbers and full details')\n  .option('--suggestions', 'Show smart suggestions for broken links')\n  .option('--debug', 'Enable debug mode with verbose output')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (report.brokenLinks.length === 0) {\n        console.log('No broken links found.');\n      } else {\n        console.log(`\\nBroken links (${report.brokenLinks.length})\\n`);\n        if (options.verbose) {\n          printBrokenVerbose(report.brokenLinks);\n        } else {\n          const grouped = new Map<string, BrokenLink[]>();\n          for (const b of report.brokenLinks) {\n            const existing = grouped.get(b.source) || [];\n            existing.push(b);\n            grouped.set(b.source, existing);\n          }\n          for (const [source, links] of grouped) {\n            const targets = links.map((l: BrokenLink) => l.link.target).join(', ');\n            console.log(`  ${source}  →  ${targets}`);\n          }\n        }\n        console.log();\n\n        if (report.suggestions && report.suggestions.length > 0) {\n          console.log('💡 Suggestions:');\n          for (const suggestion of report.suggestions.slice(0, 5)) {\n            const confidence = Math.round(suggestion.similarity * 100);\n            console.log(`  ${suggestion.broken} → ${suggestion.suggested} (${confidence}%)`);\n          }\n          console.log();\n        }\n      }\n\n      process.exit(report.stats.brokenCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('orphans')\n  .description('Show only orphan notes')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--ignore-folders <folders...>', 'Exclude folders from report')\n  .option('--verbose', 'Show full list of orphan notes')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (report.orphanNotes.length === 0) {\n        console.log('No orphan notes found.');\n      } else {\n        console.log(`\\nOrphan notes (${report.orphanNotes.length})\\n`);\n        if (options.verbose) {\n          printOrphansVerbose(report.orphanNotes);\n        } else {\n          const ignoreFolders = options.ignoreFolders || [];\n          const byFolder = new Map<string, number>();\n          for (const note of report.orphanNotes) {\n            const folder = note.relativePath.includes('/')\n              ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n              : './';\n            if (ignoreFolders.some((f: string) => folder.startsWith(f + '/') || folder === f + '/')) {\n              continue;\n            }\n            byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n          }\n          for (const [folder, count] of [...byFolder.entries()].sort((a, b) => b[1] - a[1])) {\n            console.log(`  ${folder}  ${count}`);\n          }\n        }\n        console.log();\n      }\n\n      process.exit(report.stats.orphanCount > 0 ? 1 : 0);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('graph')\n  .description('Show connection graph')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--format <type>', 'Output format: text, json', 'text')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      if (options.format === 'json') {\n        console.log(JSON.stringify(report.graph, null, 2));\n      } else {\n        console.log(\n          `Graph: ${report.stats.totalNotes} notes, ${report.stats.totalLinks} links (${report.duration}ms)\\n`,\n        );\n\n        const topConnected = [...report.graph]\n          .sort((a, b) => b.incoming.length - a.incoming.length)\n          .slice(0, 10)\n          .filter((n) => n.incoming.length > 0);\n\n        if (topConnected.length > 0) {\n          console.log('Most linked-to notes:');\n          for (const node of topConnected) {\n            console.log(\n              `  ${node.note.relativePath} (${node.incoming.length} incoming, ${node.outgoing.length} outgoing)`,\n            );\n          }\n        }\n      }\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('report')\n  .description('Generate a markdown report')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--output <file>', 'Output file path', 'dead-links-report.md')\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .action(async (options) => {\n    const spinner = ora('Scanning vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Scanned ${report.stats.totalNotes} notes in ${report.duration}ms`);\n\n      const markdown = generateMarkdownReport(report);\n      await writeFile(options.output, markdown);\n      console.log(`Report written to ${options.output}`);\n    } catch (error) {\n      spinner.fail('Scan failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram\n  .command('stats')\n  .description('Show detailed vault statistics')\n  .option('--vault <path>', 'Path to the Obsidian vault', process.cwd())\n  .option('--ignore <patterns...>', 'Ignore patterns (glob)')\n  .option('--debug', 'Enable debug mode')\n  .action(async (options) => {\n    const spinner = ora('Analyzing vault...').start();\n\n    try {\n      const report = await loadConfigAndAnalyze(options.vault, options);\n      spinner.succeed(`Analysis complete in ${report.duration}ms`);\n\n      console.log('\\n📊 Vault Statistics\\n');\n      console.log(`  Total Notes: ${report.stats.totalNotes}`);\n      console.log(`  Total Links: ${report.stats.totalLinks}`);\n      const averageLinks = report.stats.totalNotes === 0 ? 0 : report.stats.totalLinks / report.stats.totalNotes;\n      const healthScore = report.stats.totalLinks === 0\n        ? 100\n        : 100 - (report.stats.brokenCount / report.stats.totalLinks) * 100;\n      console.log(`  Avg Links per Note: ${averageLinks.toFixed(2)}`);\n      console.log(`  Broken Links: ${report.stats.brokenCount}`);\n      console.log(`  Orphan Notes: ${report.stats.orphanCount}`);\n      console.log(`  Connected Components: ${report.stats.connectedComponents}`);\n      console.log(`  Health Score: ${healthScore.toFixed(1)}%`);\n\n      const mostConnected = [...report.graph]\n        .sort((a, b) => (b.incoming.length + b.outgoing.length) - (a.incoming.length + a.outgoing.length))\n        .slice(0, 5);\n\n      console.log('\\n🌐 Most Connected Notes:');\n      for (const node of mostConnected) {\n        const total = node.incoming.length + node.outgoing.length;\n        console.log(`  ${node.note.relativePath} (${total} connections: ${node.incoming.length} in, ${node.outgoing.length} out)`);\n      }\n\n      const lonelyNotes = report.graph.filter((n) => n.incoming.length === 0 && n.outgoing.length === 0).slice(0, 5);\n      if (lonelyNotes.length > 0) {\n        console.log('\\n🔴 Orphan Notes:');\n        for (const node of lonelyNotes) {\n          console.log(`  ${node.note.relativePath}`);\n        }\n      }\n\n      console.log();\n    } catch (error) {\n      spinner.fail('Analysis failed');\n      console.error(error instanceof Error ? error.message : error);\n      process.exit(1);\n    }\n  });\n\nprogram.parse();\n","import { readFile } from 'node:fs/promises';\nimport { resolve } from 'node:path';\nimport fg from 'fast-glob';\nimport matter from 'gray-matter';\nimport type { Note } from '../types/index.js';\n\nconst DEFAULT_IGNORE = [\n  '**/node_modules/**',\n  '**/.git/**',\n  '**/.obsidian/**',\n];\n\nexport async function loadVault(\n  vaultPath: string,\n  customIgnore: string[] = [],\n): Promise<Note[]> {\n  const absolutePath = resolve(vaultPath);\n\n  const files = await fg(['**/*.md', '**/*.canvas'], {\n    cwd: absolutePath,\n    ignore: [...DEFAULT_IGNORE, ...customIgnore],\n  });\n\n  const notes: Note[] = [];\n\n  for (const file of files) {\n    const fullPath = resolve(absolutePath, file);\n    const relativePath = file.replace(/\\\\/g, '/');\n    const content = await readFile(fullPath, 'utf-8');\n    const parsed = matter(content);\n\n    const aliases: string[] = [];\n    if (parsed.data.aliases) {\n      if (Array.isArray(parsed.data.aliases)) {\n        aliases.push(...parsed.data.aliases.map(String));\n      } else if (typeof parsed.data.aliases === 'string') {\n        aliases.push(parsed.data.aliases);\n      }\n    }\n\n    notes.push({\n      path: fullPath,\n      relativePath,\n      content: parsed.content,\n      aliases,\n      links: [],\n    });\n  }\n\n  return notes;\n}\n\nexport function resolveFileName(notePath: string): string {\n  const base = notePath.replace(/\\.(md|canvas)$/, '');\n  const parts = base.split('/');\n  return parts[parts.length - 1]!;\n}\n","import type { Link } from '../types/index.js';\n\nconst wikiLinkRegex = /!?\\[\\[([^\\]]+)\\]\\]/g;\nconst markdownLinkRegex = /\\[([^\\]]*)\\]\\(([^)]+)\\)/g;\n\nexport function parseLinks(content: string): Link[] {\n  const links: Link[] = [];\n  const lines = content.split('\\n');\n\n  for (let lineNum = 0; lineNum < lines.length; lineNum++) {\n    const line = lines[lineNum]!;\n\n    for (const match of line.matchAll(wikiLinkRegex)) {\n      const raw = match[0]!;\n      const inner = match[1]!;\n      const isEmbed = raw.startsWith('!');\n\n      const link = parseWikiLink(inner, raw, isEmbed, lineNum + 1);\n      links.push(link);\n    }\n\n    for (const match of line.matchAll(markdownLinkRegex)) {\n      const raw = match[0]!;\n      const target = match[2]!;\n\n      if (target.startsWith('#')) continue;\n\n      const link: Link = {\n        raw,\n        target: target.split('#')[0]!.split('|')[0]!,\n        heading: target.includes('#') ? target.split('#')[1] : undefined,\n        type: 'markdown',\n        line: lineNum + 1,\n      };\n      links.push(link);\n    }\n  }\n\n  return links;\n}\n\nfunction parseWikiLink(inner: string, raw: string, isEmbed: boolean, line: number): Link {\n  const [targetPart, aliasPart] = inner.split('|');\n  const [target, ...rest] = targetPart!.split('#');\n\n  let heading: string | undefined;\n  let blockId: string | undefined;\n\n  if (rest.length > 0) {\n    const remainder = rest.join('#');\n    if (remainder.startsWith('^')) {\n      blockId = remainder.slice(1);\n    } else {\n      heading = remainder;\n    }\n  }\n\n  return {\n    raw,\n    target: target!.trim(),\n    alias: aliasPart?.trim(),\n    heading,\n    blockId,\n    type: isEmbed ? 'embed' : 'wiki',\n    line,\n  };\n}\n","import { existsSync } from 'node:fs';\nimport { resolve } from 'node:path';\nimport type { Note, GraphNode, BrokenLink, AnalysisReport } from '../types/index.js';\nimport { AliasResolver } from './alias-resolver.js';\nimport { buildGraph } from './graph-builder.js';\nimport { isExternalTarget, resolveAttachmentPath, resolveNoteLink } from './link-resolver.js';\n\nconst ATTACHMENT_EXTENSIONS = new Set([\n  'png', 'jpg', 'jpeg', 'gif', 'svg', 'webp', 'bmp', 'ico',\n  'pdf', 'doc', 'docx', 'xls', 'xlsx', 'ppt', 'pptx',\n  'mp3', 'mp4', 'wav', 'avi', 'mov', 'webm',\n  'zip', 'rar', '7z', 'tar', 'gz',\n  'exe', 'dmg', 'apk',\n  'css', 'js', 'ts', 'html',\n  'txt', 'csv', 'log',\n  'woff', 'woff2', 'ttf', 'eot',\n]);\n\nfunction isAttachment(target: string): boolean {\n  const ext = target.split('.').pop()?.toLowerCase();\n  return ext ? ATTACHMENT_EXTENSIONS.has(ext) : false;\n}\n\nexport function analyze(\n  notes: Note[],\n  vaultPath: string,\n  checkAttachments = false,\n  ignoreFolders: string[] = [],\n): AnalysisReport {\n  const resolver = new AliasResolver(notes);\n  const graph = buildGraph(notes, resolver, vaultPath);\n\n  const brokenLinks: BrokenLink[] = [];\n  const orphanNotes: Note[] = [];\n\n  for (const node of graph) {\n    if (node.incoming.length === 0 && node.outgoing.length === 0) {\n      if (!isIgnoredFolder(node.note.relativePath, ignoreFolders)) {\n        orphanNotes.push(node.note);\n      }\n    }\n\n    for (const link of node.note.links) {\n      if (isExternalTarget(link.target)) {\n        continue;\n      }\n\n      if (isAttachment(link.target)) {\n        if (!checkAttachments) continue;\n        const attachmentPath = resolveAttachmentPath(link.target, node.note, vaultPath);\n        if (!existsSync(attachmentPath)) {\n          brokenLinks.push({\n            source: node.note.relativePath,\n            link,\n            reason: `File \"${link.target}\" does not exist`,\n          });\n        }\n        continue;\n      }\n\n      const resolvedPath = resolveNoteLink(link, node.note, notes, resolver, vaultPath);\n\n      if (resolvedPath === node.note.path) {\n        continue;\n      }\n\n      if (!resolvedPath) {\n        brokenLinks.push({\n          source: node.note.relativePath,\n          link,\n          reason: `Target \"${link.target}\" not found in vault`,\n        });\n      }\n    }\n  }\n\n  const connectedComponents = countConnectedComponents(graph);\n  const totalLinks = notes.reduce((sum, n) => sum + n.links.length, 0);\n\n  return {\n    brokenLinks,\n    orphanNotes,\n    graph,\n    stats: {\n      totalNotes: notes.length,\n      totalLinks,\n      brokenCount: brokenLinks.length,\n      orphanCount: orphanNotes.length,\n      connectedComponents,\n    },\n  };\n}\n\nfunction isIgnoredFolder(relativePath: string, ignoreFolders: string[]): boolean {\n  const folder = relativePath.includes('/')\n    ? relativePath.split('/').slice(0, -1).join('/')\n    : '';\n  return ignoreFolders.some((ignored) => {\n    const normalized = ignored.replace(/\\\\/g, '/').replace(/^\\/+|\\/+$/g, '');\n    return folder === normalized || folder.startsWith(`${normalized}/`);\n  });\n}\n\nfunction countConnectedComponents(graph: GraphNode[]): number {\n  if (graph.length === 0) return 0;\n\n  const visited = new Set<string>();\n  let components = 0;\n\n  const adjacency = new Map<string, string[]>();\n  for (const node of graph) {\n    adjacency.set(node.note.path, [...node.incoming, ...node.outgoing]);\n  }\n\n  for (const node of graph) {\n    if (visited.has(node.note.path)) continue;\n\n    components++;\n    const stack = [node.note.path];\n\n    while (stack.length > 0) {\n      const current = stack.pop()!;\n      if (visited.has(current)) continue;\n      visited.add(current);\n\n      const neighbors = adjacency.get(current) || [];\n      for (const neighbor of neighbors) {\n        if (!visited.has(neighbor)) {\n          stack.push(neighbor);\n        }\n      }\n    }\n  }\n\n  return components;\n}\n","import type { Note } from '../types/index.js';\n\nexport class AliasResolver {\n  private aliasToNote: Map<string, string> = new Map();\n  private fileNameToNote: Map<string, string> = new Map();\n  private basenameToNote: Map<string, string> = new Map();\n\n  constructor(notes: Note[]) {\n    for (const note of notes) {\n      const fileName = note.relativePath.replace(/\\.(md|canvas)$/, '');\n      const basename = fileName.split('/').pop()!;\n\n      this.fileNameToNote.set(fileName.toLowerCase(), note.path);\n      this.basenameToNote.set(basename.toLowerCase(), note.path);\n\n      try {\n        this.fileNameToNote.set(decodeURIComponent(fileName).toLowerCase(), note.path);\n        this.basenameToNote.set(decodeURIComponent(basename).toLowerCase(), note.path);\n      } catch {\n        // skip malformed URIs\n      }\n\n      for (const alias of note.aliases) {\n        this.aliasToNote.set(alias.toLowerCase(), note.path);\n      }\n    }\n  }\n\n  resolve(target: string): string | null {\n    const normalized = target.toLowerCase().trim();\n\n    if (this.aliasToNote.has(normalized)) {\n      return this.aliasToNote.get(normalized)!;\n    }\n\n    if (this.fileNameToNote.has(normalized)) {\n      return this.fileNameToNote.get(normalized)!;\n    }\n\n    if (this.basenameToNote.has(normalized)) {\n      return this.basenameToNote.get(normalized)!;\n    }\n\n    const decoded = (() => {\n      try {\n        return decodeURIComponent(normalized);\n      } catch {\n        return normalized;\n      }\n    })();\n\n    if (this.aliasToNote.has(decoded)) {\n      return this.aliasToNote.get(decoded)!;\n    }\n    if (this.fileNameToNote.has(decoded)) {\n      return this.fileNameToNote.get(decoded)!;\n    }\n    if (this.basenameToNote.has(decoded)) {\n      return this.basenameToNote.get(decoded)!;\n    }\n\n    return null;\n  }\n}\n","import { dirname, isAbsolute, normalize, resolve } from 'node:path';\nimport type { Link, Note } from '../types/index.js';\nimport { AliasResolver } from './alias-resolver.js';\n\nconst REMOTE_TARGET = /^(?:[a-z][a-z\\d+.-]*:|\\/\\/)/i;\n\nexport function isExternalTarget(target: string): boolean {\n  return REMOTE_TARGET.test(target) || target.startsWith('#');\n}\n\nexport function resolveNoteLink(\n  link: Link,\n  source: Note,\n  notes: Note[],\n  aliases: AliasResolver,\n  vaultPath: string,\n): string | null {\n  if (isExternalTarget(link.target)) return null;\n\n  if (link.type === 'markdown') {\n    const target = decodeTarget(link.target).replace(/\\\\/g, '/');\n    const sourceRelativePath = normalize(resolve(dirname(source.path), target));\n    const exact = notes.find((note) => normalize(note.path) === sourceRelativePath);\n    if (exact) return exact.path;\n\n    // A vault-relative Markdown destination is also valid in common Obsidian vaults.\n    const vaultRelativePath = normalize(resolve(vaultPath, target.replace(/^\\/+/, '')));\n    const vaultRelative = notes.find((note) => normalize(note.path) === vaultRelativePath);\n    if (vaultRelative) return vaultRelative.path;\n  }\n\n  return aliases.resolve(decodeTarget(link.target));\n}\n\nexport function resolveAttachmentPath(\n  target: string,\n  source: Note,\n  vaultPath: string,\n): string {\n  const decoded = decodeTarget(target).replace(/\\\\/g, '/');\n  if (isAbsolute(decoded)) return normalize(decoded);\n\n  const relativeToSource = normalize(resolve(dirname(source.path), decoded));\n  if (relativeToSource.startsWith(normalize(vaultPath))) return relativeToSource;\n\n  return normalize(resolve(vaultPath, decoded.replace(/^\\/+/, '')));\n}\n\nfunction decodeTarget(target: string): string {\n  try {\n    return decodeURIComponent(target);\n  } catch {\n    return target;\n  }\n}\n","import type { Note, GraphNode } from '../types/index.js';\nimport { AliasResolver } from './alias-resolver.js';\nimport { isExternalTarget, resolveNoteLink } from './link-resolver.js';\n\nexport function buildGraph(notes: Note[], resolver: AliasResolver, vaultPath: string): GraphNode[] {\n  const notePathMap = new Map<string, GraphNode>();\n\n  for (const note of notes) {\n    notePathMap.set(note.path, {\n      note,\n      incoming: [],\n      outgoing: [],\n    });\n  }\n\n  for (const note of notes) {\n    const node = notePathMap.get(note.path)!;\n\n    for (const link of note.links) {\n      if (isExternalTarget(link.target)) continue;\n\n      const resolvedPath = resolveNoteLink(link, note, notes, resolver, vaultPath);\n\n      if (resolvedPath && notePathMap.has(resolvedPath)) {\n        if (!node.outgoing.includes(resolvedPath)) {\n          node.outgoing.push(resolvedPath);\n        }\n\n        const targetNode = notePathMap.get(resolvedPath)!;\n        if (!targetNode.incoming.includes(note.path)) {\n          targetNode.incoming.push(note.path);\n        }\n      }\n    }\n  }\n\n  return Array.from(notePathMap.values());\n}\n","import type { Note } from '../types/index.js';\r\n\r\nexport interface Suggestion {\r\n  broken: string;\r\n  suggested: string;\r\n  similarity: number;\r\n  source: string;\r\n}\r\n\r\nfunction levenshteinDistance(a: string, b: string): number {\r\n  const matrix: number[][] = Array(b.length + 1)\r\n    .fill(null)\r\n    .map(() => Array(a.length + 1).fill(0));\r\n\r\n  for (let i = 0; i <= a.length; i++) matrix[0]![i] = i;\r\n  for (let j = 0; j <= b.length; j++) matrix[j]![0] = j;\r\n\r\n  for (let j = 1; j <= b.length; j++) {\r\n    for (let i = 1; i <= a.length; i++) {\r\n      if (a[i - 1] === b[j - 1]) {\r\n        matrix[j]![i] = matrix[j - 1]![i - 1]!;\r\n      } else {\r\n        matrix[j]![i] = Math.min(\r\n          matrix[j]![i - 1]! + 1,\r\n          matrix[j - 1]![i]! + 1,\r\n          matrix[j - 1]![i - 1]! + 1,\r\n        );\r\n      }\r\n    }\r\n  }\r\n\r\n  return matrix[b.length]![a.length]!;\r\n}\r\n\r\nfunction calculateSimilarity(a: string, b: string): number {\r\n  const distance = levenshteinDistance(\r\n    a.toLowerCase(),\r\n    b.toLowerCase(),\r\n  );\r\n  const maxLen = Math.max(a.length, b.length);\r\n  return Math.max(0, 1 - distance / maxLen);\r\n}\r\n\r\nexport function generateSuggestions(\r\n  brokenTargets: string[],\r\n  allNotes: Note[],\r\n  threshold = 0.6,\r\n): Suggestion[] {\r\n  const availableNotes = allNotes.map((n) => ({\r\n    name: n.relativePath.replace(/\\.(md|canvas)$/, ''),\r\n    basename: n.relativePath.split('/').pop()?.replace(/\\.(md|canvas)$/, '') || '',\r\n    aliases: n.aliases,\r\n  }));\r\n\r\n  const suggestions: Suggestion[] = [];\r\n\r\n  for (const broken of brokenTargets) {\r\n    const brokenBasename = broken.split('/').pop() || broken;\r\n    const candidates: Array<{ suggestion: string; similarity: number }> = [];\r\n\r\n    for (const note of availableNotes) {\r\n      const basenameScore = calculateSimilarity(brokenBasename, note.basename);\r\n      const fullScore = calculateSimilarity(broken, note.name);\r\n\r\n      // Check aliases too\r\n      for (const alias of note.aliases) {\r\n        const aliasScore = calculateSimilarity(broken, alias);\r\n        if (aliasScore > basenameScore && aliasScore > fullScore) {\r\n          candidates.push({ suggestion: note.name, similarity: aliasScore });\r\n        }\r\n      }\r\n\r\n      if (basenameScore >= fullScore && basenameScore > threshold) {\r\n        candidates.push({ suggestion: note.name, similarity: basenameScore });\r\n      } else if (fullScore > threshold) {\r\n        candidates.push({ suggestion: note.name, similarity: fullScore });\r\n      }\r\n    }\r\n\r\n    // Sort by similarity and take top suggestion\r\n    if (candidates.length > 0) {\r\n      const best = candidates.sort((a, b) => b.similarity - a.similarity)[0]!;\r\n      suggestions.push({\r\n        broken,\r\n        suggested: best.suggestion,\r\n        similarity: best.similarity,\r\n        source: broken,\r\n      });\r\n    }\r\n  }\r\n\r\n  return suggestions.sort((a, b) => b.similarity - a.similarity);\r\n}\r\n","import { loadVault } from '../core/vault-loader.js';\nimport { parseLinks } from '../core/link-parser.js';\nimport { analyze } from '../core/analyzer.js';\nimport { generateSuggestions } from './suggestions.js';\nimport type { AnalysisReport, DeadLinksConfig } from '../types/index.js';\n\nexport class DeadLinksEngine {\n  async analyze(\n    vaultPath: string,\n    config: DeadLinksConfig = {},\n  ): Promise<AnalysisReport> {\n    const startTime = Date.now();\n\n    const notes = await loadVault(vaultPath, config.ignore);\n\n    // Parallelize link parsing\n    await Promise.all(\n      notes.map((note) => {\n        note.links = parseLinks(note.content);\n        return Promise.resolve();\n      }),\n    );\n\n    const report = analyze(notes, vaultPath, config.checkAttachments, config.ignoreFolders);\n\n    // Generate suggestions for broken links\n    if (config.suggestions || config.fix) {\n      const brokenTargets = Array.from(\n        new Set(report.brokenLinks.map((b) => b.link.target)),\n      );\n      report.suggestions = generateSuggestions(brokenTargets, notes, 0.65);\n    }\n\n    report.duration = Date.now() - startTime;\n\n    return report;\n  }\n}\n","import { readFile, access } from 'node:fs/promises';\nimport { resolve, join } from 'node:path';\nimport type { DeadLinksConfig } from '../types/index.js';\n\nconst CONFIG_FILES = ['.deadlinksrc.json', '.deadlinksrc', 'dead-links.config.json'];\n\nexport class ConfigLoader {\n  async loadConfig(vaultPath: string): Promise<DeadLinksConfig> {\n    const absolutePath = resolve(vaultPath);\n\n    for (const configFile of CONFIG_FILES) {\n      const configPath = join(absolutePath, configFile);\n\n      try {\n        await access(configPath);\n        const content = await readFile(configPath, 'utf-8');\n        const parsed = JSON.parse(content) as DeadLinksConfig;\n\n        if (parsed.ignore && !Array.isArray(parsed.ignore)) {\n          continue;\n        }\n        if (parsed.ignoreFolders && !Array.isArray(parsed.ignoreFolders)) {\n          continue;\n        }\n\n        return parsed;\n      } catch {\n        continue;\n      }\n    }\n\n    return {};\n  }\n\n  mergeConfig(\n    fileConfig: DeadLinksConfig,\n    cliOptions: Record<string, unknown>,\n  ): DeadLinksConfig {\n    return {\n      ignore: (cliOptions.ignore as string[] | undefined) || fileConfig.ignore,\n      checkAttachments:\n        (cliOptions.attachments as boolean | undefined) ??\n        fileConfig.checkAttachments ??\n        false,\n      ignoreFolders:\n        (cliOptions.ignoreFolders as string[] | undefined) ||\n        fileConfig.ignoreFolders,\n      suggestions:\n        (cliOptions.suggestions as boolean | undefined) ??\n        fileConfig.suggestions ??\n        false,\n      debug:\n        (cliOptions.debug as boolean | undefined) ??\n        fileConfig.debug ??\n        false,\n      fix:\n        (cliOptions.fix as boolean | undefined) ??\n        fileConfig.fix ??\n        false,\n    };\n  }\n}\n","import { Chalk } from 'chalk';\nimport type {\n  AnalysisReport,\n  BrokenLink,\n  Note,\n} from '../types/index.js';\n\nexport class TerminalReporter {\n  private ignoreFolders: string[];\n  private quiet: boolean;\n  private chalk: Chalk;\n\n  constructor(ignoreFolders: string[] = [], quiet = false, noColor = false) {\n    this.ignoreFolders = ignoreFolders;\n    this.quiet = quiet;\n    this.chalk = new Chalk({ level: noColor ? 0 : undefined });\n  }\n\n  report(result: AnalysisReport): string {\n    if (this.quiet) {\n      return this.reportQuiet(result);\n    }\n\n    let output = '';\n    output += this.printStats(result);\n    output += this.printBrokenLinks(result.brokenLinks);\n    output += this.printOrphanNotes(result.orphanNotes);\n    if (result.suggestions && result.suggestions.length > 0) {\n      output += this.printSuggestions(result.suggestions);\n    }\n    output += this.printDuration(result.duration);\n    return output;\n  }\n\n  private reportQuiet(result: AnalysisReport): string {\n    const lines: string[] = [];\n\n    for (const broken of result.brokenLinks) {\n      lines.push(`${broken.source} -> ${broken.link.target}`);\n    }\n\n    for (const note of result.orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n      if (this.ignoreFolders.some((f) => folder.startsWith(f + '/') || folder === f + '/')) {\n        continue;\n      }\n      lines.push(`orphan: ${note.relativePath}`);\n    }\n\n    return lines.join('\\n');\n  }\n\n  private printStats(report: AnalysisReport): string {\n    const pad = 14;\n    let out = '\\n';\n    out += this.statLine('Notes'.padEnd(pad), String(report.stats.totalNotes));\n    out += this.statLine('Links'.padEnd(pad), String(report.stats.totalLinks));\n    out += this.statLine('Broken links'.padEnd(pad), String(report.stats.brokenCount), 'red');\n    out += this.statLine('Orphan notes'.padEnd(pad), String(report.stats.orphanCount), 'yellow');\n    out += this.statLine('Components'.padEnd(pad), String(report.stats.connectedComponents));\n    out += '\\n';\n    return out;\n  }\n\n  private statLine(label: string, value: string, color: 'red' | 'yellow' | 'white' = 'white'): string {\n    const chalk = this.chalk;\n    return `  ${this.chalk.gray(label)}  ${color === 'red' ? this.chalk.red.bold(value) : color === 'yellow' ? this.chalk.yellow.bold(value) : this.chalk.white.bold(value)}\\n`;\n  }\n\n  private printBrokenLinks(brokenLinks: BrokenLink[]): string {\n    if (brokenLinks.length === 0) {\n      return this.chalk.green('  ✓  No broken links\\n\\n');\n    }\n\n    const grouped = new Map<string, BrokenLink[]>();\n    for (const broken of brokenLinks) {\n      const existing = grouped.get(broken.source) || [];\n      existing.push(broken);\n      grouped.set(broken.source, existing);\n    }\n\n    const sorted = [...grouped.entries()].sort((a, b) => b[1].length - a[1].length);\n\n    let out = this.chalk.bold.red(`\\n✖  Broken links (${brokenLinks.length})\\n\\n`);\n\n    for (const [source, links] of sorted) {\n      const count = links.length;\n      const isMultiple = count >= 2;\n\n      const countStr = isMultiple ? this.chalk.red.bold(`✖  ${count}`) : this.chalk.yellow.bold(`✖  ${count}`);\n      out += `  ${countStr}  ${this.chalk.white.bold(source)}\\n`;\n\n      for (const link of links) {\n        const pill = isMultiple\n          ? this.chalk.redBright(`[${link.link.target}]`)\n          : this.chalk.yellowBright(`[${link.link.target}]`);\n        out += `      ${pill}\\n`;\n      }\n      out += '\\n';\n    }\n\n    return out;\n  }\n\n  private printOrphanNotes(orphanNotes: Note[]): string {\n    if (orphanNotes.length === 0) {\n      return this.chalk.green('  ✓  No orphan notes\\n\\n');\n    }\n\n    const byFolder = new Map<string, number>();\n    for (const note of orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n\n      if (this.ignoreFolders.some((f) => folder.startsWith(f + '/') || folder === f + '/')) {\n        continue;\n      }\n\n      byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n    }\n\n    const sorted = [...byFolder.entries()].sort((a, b) => b[1] - a[1]);\n\n    if (sorted.length === 0) {\n      return this.chalk.green('  ✓  No orphan notes (all in ignored folders)\\n\\n');\n    }\n\n    const maxCount = sorted[0]![1];\n    const barWidth = 10;\n\n    let out = this.chalk.bold.yellow(`\\n⚠  Orphan notes (${orphanNotes.length} total)\\n\\n`);\n\n    for (const [folder, count] of sorted) {\n      const filled = Math.round((count / maxCount) * barWidth);\n      const empty = barWidth - filled;\n      const bar = this.chalk.gray('█'.repeat(filled) + '░'.repeat(empty));\n      out += `  ${this.chalk.gray(folder.padEnd(40))}  ${bar}  ${this.chalk.white.bold(String(count))}\\n`;\n    }\n\n    out += '\\n';\n    return out;\n  }\n\n  private printDuration(ms: number): string {\n    return this.chalk.dim(`  Completed in ${ms}ms\\n`);\n  }\n\n  private printSuggestions(\n    suggestions: Array<{ broken: string; suggested: string; similarity: number }>,\n  ): string {\n    let out = this.chalk.bold.cyan(`\\n💡 Suggestions (${suggestions.length})\\n\\n`);\n\n    for (const suggestion of suggestions.slice(0, 5)) {\n      const confidence = Math.round(suggestion.similarity * 100);\n      const bar =\n        confidence >= 80\n          ? this.chalk.green('█████')\n          : confidence >= 60\n            ? this.chalk.yellow('█████')\n            : this.chalk.gray('█████');\n\n      out += `  ${this.chalk.gray(suggestion.broken)} → ${this.chalk.cyan(suggestion.suggested)}\\n`;\n      out += `      ${bar} ${confidence}%\\n\\n`;\n    }\n\n    return out;\n  }\n}\n","import type { AnalysisReport } from '../types/index.js';\n\nexport class JsonReporter {\n  report(result: AnalysisReport): string {\n    return JSON.stringify(\n      {\n        stats: result.stats,\n        brokenLinks: result.brokenLinks,\n        orphanNotes: result.orphanNotes.map((n) => ({\n          path: n.relativePath,\n        })),\n        graph: result.graph.map((n) => ({\n          note: n.note.relativePath,\n          incoming: n.incoming.length,\n          outgoing: n.outgoing.length,\n        })),\n        duration: result.duration,\n      },\n      null,\n      2,\n    );\n  }\n}\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class CsvReporter {\r\n  report(result: AnalysisReport): string {\r\n    const lines: string[] = [];\r\n\r\n    // Broken Links CSV\r\n    lines.push('# BROKEN LINKS');\r\n    lines.push('Source,Target,Type,Line,Reason');\r\n\r\n    for (const broken of result.brokenLinks) {\r\n      const source = this.escapeCsv(broken.source);\r\n      const target = this.escapeCsv(broken.link.target);\r\n      const type = broken.link.type;\r\n      const line = broken.link.line;\r\n      const reason = this.escapeCsv(broken.reason);\r\n\r\n      lines.push(`${source},${target},${type},${line},\"${reason}\"`);\r\n    }\r\n\r\n    // Orphan Notes CSV\r\n    lines.push('\\n# ORPHAN NOTES');\r\n    lines.push('Note,Path');\r\n\r\n    for (const orphan of result.orphanNotes) {\r\n      const name = this.escapeCsv(orphan.relativePath);\r\n      lines.push(`${name},\"${name}\"`);\r\n    }\r\n\r\n    // Graph Stats CSV\r\n    lines.push('\\n# GRAPH STATISTICS');\r\n    lines.push('Metric,Value');\r\n    lines.push(`Total Notes,${result.stats.totalNotes}`);\r\n    lines.push(`Total Links,${result.stats.totalLinks}`);\r\n    lines.push(`Broken Links,${result.stats.brokenCount}`);\r\n    lines.push(`Orphan Notes,${result.stats.orphanCount}`);\r\n    lines.push(`Connected Components,${result.stats.connectedComponents}`);\r\n    lines.push(`Duration (ms),${result.duration}`);\r\n\r\n    return lines.join('\\n');\r\n  }\r\n\r\n  private escapeCsv(value: string): string {\r\n    if (value.includes(',') || value.includes('\"') || value.includes('\\n')) {\r\n      return `\"${value.replace(/\"/g, '\"\"')}\"`;\r\n    }\r\n    return value;\r\n  }\r\n}\r\n","import type { AnalysisReport, BrokenLink, GraphNode, Note } from '../types/index.js';\n\r\nexport class HtmlReporter {\r\n  report(result: AnalysisReport): string {\r\n    const brokenLinksHtml = this.renderBrokenLinks(result.brokenLinks);\r\n    const orphanNotesHtml = this.renderOrphanNotes(result.orphanNotes);\r\n    const graphHtml = this.renderGraph(result.graph);\r\n    const statsHtml = this.renderStats(result.stats, result.duration);\r\n\r\n    return `<!DOCTYPE html>\r\n<html lang=\"en\">\r\n<head>\r\n    <meta charset=\"UTF-8\">\r\n    <meta name=\"viewport\" content=\"width=device-width, initial-scale=1.0\">\r\n    <title>Dead Links Report</title>\r\n    <style>\r\n        * { margin: 0; padding: 0; box-sizing: border-box; }\r\n        body {\r\n            font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, sans-serif;\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            min-height: 100vh;\r\n            padding: 20px;\r\n        }\r\n        .container {\r\n            max-width: 1400px;\r\n            margin: 0 auto;\r\n            background: white;\r\n            border-radius: 12px;\r\n            box-shadow: 0 20px 60px rgba(0,0,0,0.3);\r\n            overflow: hidden;\r\n        }\r\n        header {\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            color: white;\r\n            padding: 40px;\r\n            text-align: center;\r\n        }\r\n        header h1 { font-size: 2.5em; margin-bottom: 10px; }\r\n        header p { font-size: 1.1em; opacity: 0.9; }\r\n        .content { padding: 40px; }\r\n        .section {\r\n            margin-bottom: 40px;\r\n            border-left: 4px solid #667eea;\r\n            padding-left: 20px;\r\n        }\r\n        .section h2 {\r\n            font-size: 1.8em;\r\n            margin-bottom: 20px;\r\n            color: #333;\r\n        }\r\n        .stats-grid {\r\n            display: grid;\r\n            grid-template-columns: repeat(auto-fit, minmax(200px, 1fr));\r\n            gap: 20px;\r\n            margin-bottom: 40px;\r\n        }\r\n        .stat-card {\r\n            background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);\r\n            color: white;\r\n            padding: 20px;\r\n            border-radius: 8px;\r\n            text-align: center;\r\n        }\r\n        .stat-card .value { font-size: 2.5em; font-weight: bold; }\r\n        .stat-card .label { font-size: 0.9em; opacity: 0.9; margin-top: 10px; }\r\n        table {\r\n            width: 100%;\r\n            border-collapse: collapse;\r\n            margin-top: 20px;\r\n        }\r\n        th {\r\n            background: #f5f5f5;\r\n            padding: 12px;\r\n            text-align: left;\r\n            border-bottom: 2px solid #667eea;\r\n            font-weight: 600;\r\n        }\r\n        td {\r\n            padding: 12px;\r\n            border-bottom: 1px solid #eee;\r\n        }\r\n        tr:hover { background: #f9f9f9; }\r\n        .badge {\r\n            display: inline-block;\r\n            padding: 4px 8px;\r\n            border-radius: 4px;\r\n            font-size: 0.85em;\r\n            font-weight: 500;\r\n        }\r\n        .badge-wiki { background: #dbeafe; color: #1e40af; }\r\n        .badge-embed { background: #fed7aa; color: #92400e; }\r\n        .badge-markdown { background: #d1fae5; color: #065f46; }\r\n        .error { color: #dc2626; }\r\n        .success { color: #16a34a; }\r\n        .tabs {\r\n            display: flex;\r\n            gap: 0;\r\n            border-bottom: 2px solid #eee;\r\n            margin-bottom: 20px;\r\n        }\r\n        .tab-button {\r\n            padding: 12px 20px;\r\n            border: none;\r\n            background: none;\r\n            cursor: pointer;\r\n            font-size: 1em;\r\n            border-bottom: 3px solid transparent;\r\n            color: #666;\r\n            transition: all 0.3s;\r\n        }\r\n        .tab-button.active {\r\n            color: #667eea;\r\n            border-bottom-color: #667eea;\r\n        }\r\n        .tab-content { display: none; }\r\n        .tab-content.active { display: block; }\r\n        .filter-box {\r\n            margin: 20px 0;\r\n            padding: 15px;\r\n            background: #f9f9f9;\r\n            border-radius: 8px;\r\n        }\r\n        .filter-box input {\r\n            width: 100%;\r\n            padding: 8px;\r\n            border: 1px solid #ddd;\r\n            border-radius: 4px;\r\n            font-size: 1em;\r\n        }\r\n        footer {\r\n            background: #f5f5f5;\r\n            padding: 20px;\r\n            text-align: center;\r\n            color: #666;\r\n            font-size: 0.9em;\r\n        }\r\n    </style>\r\n</head>\r\n<body>\r\n    <div class=\"container\">\r\n        <header>\r\n            <h1>🔍 Dead Links Report</h1>\r\n            <p>Obsidian Vault Analysis</p>\r\n        </header>\r\n\r\n        <div class=\"content\">\r\n            ${statsHtml}\r\n            ${brokenLinksHtml}\r\n            ${orphanNotesHtml}\r\n            ${graphHtml}\r\n        </div>\r\n\r\n        <footer>\r\n            Generated on ${new Date().toLocaleString()}\r\n        </footer>\r\n    </div>\r\n\r\n    <script>\r\n        function setupTabs() {\r\n            const buttons = document.querySelectorAll('.tab-button');\r\n            const contents = document.querySelectorAll('.tab-content');\r\n\r\n            buttons.forEach((button, index) => {\r\n                button.addEventListener('click', () => {\r\n                    buttons.forEach(b => b.classList.remove('active'));\r\n                    contents.forEach(c => c.classList.remove('active'));\r\n                    button.classList.add('active');\r\n                    contents[index].classList.add('active');\r\n                });\r\n            });\r\n\r\n            // Activate first tab\r\n            if (buttons.length > 0) buttons[0].classList.add('active');\r\n            if (contents.length > 0) contents[0].classList.add('active');\r\n        }\r\n\r\n        function setupFilter(tableId, inputId) {\r\n            const input = document.getElementById(inputId);\r\n            const table = document.getElementById(tableId);\r\n            if (!input || !table) return;\r\n\r\n            input.addEventListener('keyup', (e) => {\r\n                const filter = e.target.value.toLowerCase();\r\n                const rows = table.querySelectorAll('tbody tr');\r\n                rows.forEach(row => {\r\n                    const text = row.textContent.toLowerCase();\r\n                    row.style.display = text.includes(filter) ? '' : 'none';\r\n                });\r\n            });\r\n        }\r\n\r\n        document.addEventListener('DOMContentLoaded', () => {\r\n            setupTabs();\r\n            setupFilter('broken-table', 'broken-filter');\r\n            setupFilter('orphan-table', 'orphan-filter');\r\n        });\r\n    </script>\r\n</body>\r\n</html>`;\r\n  }\r\n\r\n  private renderStats(\r\n    stats: {\r\n      totalNotes: number;\r\n      totalLinks: number;\r\n      brokenCount: number;\r\n      orphanCount: number;\r\n      connectedComponents: number;\r\n    },\r\n    duration: number,\r\n  ): string {\r\n    const healthColor =\r\n      stats.brokenCount === 0 && stats.orphanCount === 0 ? '#16a34a' : '#dc2626';\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>📊 Overview</h2>\r\n            <div class=\"stats-grid\">\r\n                <div class=\"stat-card\">\r\n                    <div class=\"value\">${stats.totalNotes}</div>\r\n                    <div class=\"label\">Total Notes</div>\r\n                </div>\r\n                <div class=\"stat-card\">\r\n                    <div class=\"value\">${stats.totalLinks}</div>\r\n                    <div class=\"label\">Total Links</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #dc2626 0%, #991b1b 100%);\">\r\n                    <div class=\"value\">${stats.brokenCount}</div>\r\n                    <div class=\"label\">Broken Links</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #f59e0b 0%, #d97706 100%);\">\r\n                    <div class=\"value\">${stats.orphanCount}</div>\r\n                    <div class=\"label\">Orphan Notes</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, ${healthColor} 0%, ${healthColor === '#16a34a' ? '#15803d' : '#991b1b'} 100%);\">\r\n                    <div class=\"value\">${stats.connectedComponents}</div>\r\n                    <div class=\"label\">Connected Components</div>\r\n                </div>\r\n                <div class=\"stat-card\" style=\"background: linear-gradient(135deg, #8b5cf6 0%, #6d28d9 100%);\">\r\n                    <div class=\"value\">${duration}ms</div>\r\n                    <div class=\"label\">Scan Duration</div>\r\n                </div>\r\n            </div>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderBrokenLinks(brokenLinks: BrokenLink[]): string {\n    if (brokenLinks.length === 0) {\r\n      return `\r\n        <div class=\"section\">\r\n            <h2>✅ Broken Links</h2>\r\n            <p class=\"success\">No broken links found!</p>\r\n        </div>\r\n      `;\r\n    }\r\n\r\n    const rows = brokenLinks\r\n      .map(\r\n        (link) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(link.source)}</td>\r\n            <td>${this.escapeHtml(link.link.target)}</td>\r\n            <td><span class=\"badge badge-${link.link.type}\">${link.link.type}</span></td>\r\n            <td>${link.link.line}</td>\r\n            <td>${this.escapeHtml(link.reason)}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🔴 Broken Links (${brokenLinks.length})</h2>\r\n            <div class=\"filter-box\">\r\n                <input type=\"text\" id=\"broken-filter\" placeholder=\"Filter by source or target...\" />\r\n            </div>\r\n            <table id=\"broken-table\">\r\n                <thead>\r\n                    <tr>\r\n                        <th>Source</th>\r\n                        <th>Target</th>\r\n                        <th>Type</th>\r\n                        <th>Line</th>\r\n                        <th>Reason</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderOrphanNotes(orphanNotes: Note[]): string {\n    if (orphanNotes.length === 0) {\r\n      return `\r\n        <div class=\"section\">\r\n            <h2>✅ Orphan Notes</h2>\r\n            <p class=\"success\">No orphan notes found!</p>\r\n        </div>\r\n      `;\r\n    }\r\n\r\n    const rows = orphanNotes\r\n      .map(\r\n        (note) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(note.relativePath)}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🟡 Orphan Notes (${orphanNotes.length})</h2>\r\n            <div class=\"filter-box\">\r\n                <input type=\"text\" id=\"orphan-filter\" placeholder=\"Filter by path...\" />\r\n            </div>\r\n            <table id=\"orphan-table\">\r\n                <thead>\r\n                    <tr>\r\n                        <th>Path</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private renderGraph(graph: GraphNode[]): string {\n    const mostConnected = [...graph]\r\n      .sort((a, b) => (b.incoming.length + b.outgoing.length) - (a.incoming.length + a.outgoing.length))\r\n      .slice(0, 5);\r\n\r\n    const rows = mostConnected\r\n      .map(\r\n        (node) => `\r\n        <tr>\r\n            <td>${this.escapeHtml(node.note.relativePath)}</td>\r\n            <td>${node.incoming.length}</td>\r\n            <td>${node.outgoing.length}</td>\r\n            <td>${node.incoming.length + node.outgoing.length}</td>\r\n        </tr>\r\n      `,\r\n      )\r\n      .join('');\r\n\r\n    return `\r\n        <div class=\"section\">\r\n            <h2>🌐 Most Connected Notes</h2>\r\n            <table>\r\n                <thead>\r\n                    <tr>\r\n                        <th>Note</th>\r\n                        <th>Incoming</th>\r\n                        <th>Outgoing</th>\r\n                        <th>Total</th>\r\n                    </tr>\r\n                </thead>\r\n                <tbody>\r\n                    ${rows}\r\n                </tbody>\r\n            </table>\r\n        </div>\r\n    `;\r\n  }\r\n\r\n  private escapeHtml(text: string): string {\r\n    return text\r\n      .replace(/&/g, '&amp;')\r\n      .replace(/</g, '&lt;')\r\n      .replace(/>/g, '&gt;')\r\n      .replace(/\"/g, '&quot;')\r\n      .replace(/'/g, '&#039;');\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class MermaidReporter {\r\n  report(result: AnalysisReport, maxNodes = 50): string {\r\n    let output = 'graph LR\\n';\r\n\r\n    // Limit nodes for readability\r\n    const nodesToShow = result.graph.slice(0, maxNodes);\r\n    const nodeMap = new Map(nodesToShow.map((n) => [n.note.path, n.note.relativePath]));\r\n\r\n    // Add nodes\r\n    for (const node of nodesToShow) {\r\n      const id = this.sanitizeId(node.note.relativePath);\r\n      const label = this.escapeLabel(node.note.relativePath);\r\n\r\n      if (result.orphanNotes.some((o) => o.path === node.note.path)) {\r\n        output += `  ${id}[\"<b>🔴 ${label}</b>\"]:::orphan\\n`;\r\n      } else if (node.incoming.length === 0) {\r\n        output += `  ${id}[\"📄 ${label}\"]:::source\\n`;\r\n      } else if (node.outgoing.length === 0) {\r\n        output += `  ${id}[\"📌 ${label}\"]:::sink\\n`;\r\n      } else {\r\n        output += `  ${id}[\"${label}\"]\\n`;\r\n      }\r\n    }\r\n\r\n    // Add edges\r\n    const addedEdges = new Set<string>();\r\n    for (const node of nodesToShow) {\r\n      const sourceId = this.sanitizeId(node.note.relativePath);\r\n\r\n      for (const targetPath of node.outgoing) {\r\n        const targetName = nodeMap.get(targetPath);\r\n        if (!targetName) continue;\r\n\r\n        const targetId = this.sanitizeId(targetName);\r\n        const edgeKey = `${sourceId}-${targetId}`;\r\n\r\n        if (!addedEdges.has(edgeKey)) {\r\n          output += `  ${sourceId} --> ${targetId}\\n`;\r\n          addedEdges.add(edgeKey);\r\n        }\r\n      }\r\n    }\r\n\r\n    // Add styling\r\n    output += '\\n  classDef orphan fill:#ff6b6b,stroke:#c92a2a,color:#fff\\n';\r\n    output += '  classDef source fill:#4dabf7,stroke:#1971c2,color:#fff\\n';\r\n    output += '  classDef sink fill:#51cf66,stroke:#2f9e44,color:#fff\\n';\r\n\r\n    if (result.graph.length > maxNodes) {\r\n      output += `\\n  note[\"Graph limited to ${maxNodes} of ${result.graph.length} nodes for readability\"]\\n`;\r\n    }\r\n\r\n    return output;\r\n  }\r\n\r\n  private sanitizeId(name: string): string {\r\n    return name\r\n      .replace(/\\.(md|canvas)$/, '')\r\n      .replace(/[^a-zA-Z0-9_]/g, '_')\r\n      .substring(0, 30);\r\n  }\r\n\r\n  private escapeLabel(name: string): string {\r\n    return name.replace(/\"/g, '\\\\\"').substring(0, 50);\r\n  }\r\n}\r\n","import type { AnalysisReport } from '../types/index.js';\r\n\r\nexport class GraphVizReporter {\r\n  report(result: AnalysisReport, maxNodes = 100): string {\r\n    let output = 'digraph VaultGraph {\\n';\r\n    output += '  rankdir=LR;\\n';\r\n    output += '  node [shape=box, style=rounded];\\n';\r\n    output += '  edge [arrowsize=0.5];\\n\\n';\r\n\r\n    const nodesToShow = result.graph.slice(0, maxNodes);\r\n    const nodeMap = new Map(nodesToShow.map((n) => [n.note.path, n.note.relativePath]));\r\n\r\n    // Add nodes with styling\r\n    for (const node of nodesToShow) {\r\n      const id = this.sanitizeId(node.note.relativePath);\r\n      const label = this.escapeLabel(node.note.relativePath);\n      let style = 'filled';\r\n      let color = '#ffffff';\r\n      let fontColor = '#000000';\r\n      let shape = 'box';\r\n\r\n      if (result.orphanNotes.some((o) => o.path === node.note.path)) {\r\n        color = '#ff6b6b';\r\n        fontColor = '#ffffff';\r\n        shape = 'box';\r\n      } else if (node.incoming.length === 0) {\r\n        color = '#4dabf7';\r\n        fontColor = '#ffffff';\r\n      } else if (node.outgoing.length === 0) {\r\n        color = '#51cf66';\r\n        fontColor = '#ffffff';\r\n      }\r\n\r\n      output += `  \"${id}\" [label=\"${label}\", fillcolor=\"${color}\", fontcolor=\"${fontColor}\", shape=${shape}];\\n`;\r\n    }\r\n\r\n    output += '\\n';\r\n\r\n    // Add edges\r\n    const addedEdges = new Set<string>();\r\n    for (const node of nodesToShow) {\r\n      const sourceId = this.sanitizeId(node.note.relativePath);\r\n\r\n      for (const targetPath of node.outgoing) {\r\n        const targetName = nodeMap.get(targetPath);\r\n        if (!targetName) continue;\r\n\r\n        const targetId = this.sanitizeId(targetName);\r\n        const edgeKey = `${sourceId}->${targetId}`;\r\n\r\n        if (!addedEdges.has(edgeKey)) {\r\n          output += `  \"${sourceId}\" -> \"${targetId}\";\\n`;\r\n          addedEdges.add(edgeKey);\r\n        }\r\n      }\r\n    }\r\n\r\n    output += '\\n  // Legend\\n';\r\n    output += '  subgraph legend {\\n';\r\n    output += '    rank=sink;\\n';\r\n    output += '    orphan [label=\"🔴 Orphan\", fillcolor=\"#ff6b6b\", fontcolor=\"white\"];\\n';\r\n    output += '    source [label=\"📄 Source (no incoming)\", fillcolor=\"#4dabf7\", fontcolor=\"white\"];\\n';\r\n    output += '    sink [label=\"📌 Sink (no outgoing)\", fillcolor=\"#51cf66\", fontcolor=\"white\"];\\n';\r\n    output += '  }\\n';\r\n\r\n    output += '}\\n';\r\n\r\n    return output;\r\n  }\r\n\r\n  private sanitizeId(name: string): string {\n    return name.replace(/\\.(md|canvas)$/, '').replace(/[^a-zA-Z0-9_]/g, '_');\n  }\n\n  private escapeLabel(label: string): string {\n    return label.replace(/\\\\/g, '\\\\\\\\').replace(/\"/g, '\\\\\"');\n  }\n}\n","import type { AnalysisReport } from '../types/index.js';\n\nfunction pill(target: string, isMultiple: boolean): string {\n  return isMultiple ? `[${target}]` : `[${target}]`;\n}\n\nfunction bar(count: number, max: number, width: number): string {\n  const filled = Math.round((count / max) * width);\n  const empty = width - filled;\n  return '█'.repeat(filled) + '░'.repeat(empty);\n}\n\nexport function generateMarkdownReport(report: AnalysisReport): string {\n  const lines: string[] = [];\n\n  lines.push('# Dead Links Report');\n  lines.push('');\n  lines.push(`Generated: ${new Date().toISOString()}`);\n  lines.push(`Completed in ${report.duration}ms`);\n  lines.push('');\n\n  lines.push('## Stats');\n  lines.push('');\n  lines.push(`| Metric | Value |`);\n  lines.push(`|--------|-------|`);\n  lines.push(`| Notes | ${report.stats.totalNotes} |`);\n  lines.push(`| Links | ${report.stats.totalLinks} |`);\n  lines.push(`| Broken | ${report.stats.brokenCount} |`);\n  lines.push(`| Orphans | ${report.stats.orphanCount} |`);\n  lines.push(`| Components | ${report.stats.connectedComponents} |`);\n  lines.push('');\n\n  lines.push('## Broken Links');\n  lines.push('');\n\n  if (report.brokenLinks.length === 0) {\n    lines.push('No broken links found.');\n  } else {\n    const grouped = new Map<string, typeof report.brokenLinks>();\n    for (const b of report.brokenLinks) {\n      const existing = grouped.get(b.source) || [];\n      existing.push(b);\n      grouped.set(b.source, existing);\n    }\n\n    const sorted = [...grouped.entries()].sort((a, b) => b[1].length - a[1].length);\n\n    for (const [source, links] of sorted) {\n      const count = links.length;\n      lines.push(`### ${count > 1 ? '✖' : '✖'} ${count}  ${source}`);\n      lines.push('');\n      for (const link of links) {\n        lines.push(`- ${pill(link.link.target, count > 1)}`);\n      }\n      lines.push('');\n    }\n  }\n\n  lines.push('## Orphan Notes');\n  lines.push('');\n\n  if (report.orphanNotes.length === 0) {\n    lines.push('No orphan notes found.');\n  } else {\n    const byFolder = new Map<string, number>();\n    for (const note of report.orphanNotes) {\n      const folder = note.relativePath.includes('/')\n        ? note.relativePath.split('/').slice(0, -1).join('/') + '/'\n        : './';\n      byFolder.set(folder, (byFolder.get(folder) || 0) + 1);\n    }\n\n    const sorted = [...byFolder.entries()].sort((a, b) => b[1] - a[1]);\n    const maxCount = sorted[0]?.[1] ?? 1;\n\n    for (const [folder, count] of sorted) {\n      lines.push(`- ${folder.padEnd(40)}  ${bar(count, maxCount, 10)}  ${count}`);\n    }\n  }\n\n  lines.push('');\n\n  return lines.join('\\n');\n}\n","import { readFile, writeFile } from 'node:fs/promises';\nimport { resolve } from 'node:path';\nimport type { BrokenLink } from '../types/index.js';\n\r\nexport interface FixResult {\r\n  file: string;\r\n  originalLink: string;\r\n  newLink: string;\r\n  success: boolean;\r\n  error?: string;\r\n}\r\n\r\nfunction escapeRegExp(string: string): string {\r\n  return string.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\r\n}\r\n\r\nexport async function autoFixBrokenLinks(\r\n  fixMap: Map<string, string>,\r\n  filePath: string,\r\n): Promise<FixResult[]> {\r\n  const results: FixResult[] = [];\r\n\r\n  try {\r\n    const content = await readFile(filePath, 'utf-8');\r\n    let newContent = content;\r\n\r\n    for (const [oldTarget, newTarget] of fixMap.entries()) {\r\n      // For wiki links: [[oldTarget]] or ![[oldTarget]]\r\n      const wikiRegex = new RegExp(\r\n        `(!?\\\\[\\\\[${escapeRegExp(oldTarget)}(?:\\\\|[^\\\\]]*)?\\\\]\\\\])`,\r\n        'g',\r\n      );\r\n      const wikiMatches = content.match(wikiRegex);\r\n      if (wikiMatches) {\r\n        for (const match of wikiMatches) {\r\n          const isEmbed = match.startsWith('!');\r\n          const hasAlias = match.includes('|');\r\n          let replacement: string;\r\n\r\n          if (hasAlias) {\r\n            const parts = match.split('|');\r\n            replacement = `${isEmbed ? '!' : ''}[[${newTarget}|${parts[1]}`;\r\n          } else {\r\n            replacement = `${isEmbed ? '!' : ''}[[${newTarget}]]`;\r\n          }\r\n\r\n          newContent = newContent.replace(match, replacement);\r\n          results.push({\r\n            file: filePath,\r\n            originalLink: match,\r\n            newLink: replacement,\r\n            success: true,\r\n          });\r\n        }\r\n      }\r\n\r\n      // For markdown links: [text](oldTarget) or [text](oldTarget#heading)\r\n      const markdownRegex = new RegExp(\r\n        `(\\\\[[^\\\\]]*\\\\]\\\\(${escapeRegExp(oldTarget)}(?:#[^)]*)?\\\\))`,\r\n        'g',\r\n      );\r\n      const markdownMatches = content.match(markdownRegex);\r\n      if (markdownMatches) {\r\n        for (const match of markdownMatches) {\r\n          const linkPart = match.match(/\\(([^)]+)\\)/)?.[1] || '';\r\n          const heading = linkPart.includes('#') ? linkPart.split('#')[1] : '';\r\n          const newLink = heading ? `${newTarget}#${heading}` : newTarget;\r\n          const textPart = match.match(/\\[([^\\]]*)\\]/)?.[0] || '[]';\r\n          const replacement = `${textPart}(${newLink})`;\r\n\r\n          newContent = newContent.replace(match, replacement);\r\n          results.push({\r\n            file: filePath,\r\n            originalLink: match,\r\n            newLink: replacement,\r\n            success: true,\r\n          });\r\n        }\r\n      }\r\n    }\r\n\r\n    // Only write if content changed\r\n    if (newContent !== content) {\r\n      await writeFile(filePath, newContent, 'utf-8');\r\n    }\r\n\r\n    return results;\r\n  } catch (error) {\r\n    return [\r\n      {\r\n        file: filePath,\r\n        originalLink: '',\r\n        newLink: '',\r\n        success: false,\r\n        error: error instanceof Error ? error.message : 'Unknown error',\r\n      },\r\n    ];\r\n  }\r\n}\r\n\r\nexport async function fixBrokenLinksBatch(\n  brokenLinks: BrokenLink[],\n  suggestionMap: Map<string, string>,\n  vaultPath: string,\n): Promise<Map<string, FixResult[]>> {\n  const fileFixMap = new Map<string, Map<string, string>>();\r\n\r\n  // Group fixes by file\r\n  for (const broken of brokenLinks) {\r\n    const suggestion = suggestionMap.get(broken.link.target);\r\n    if (!suggestion) continue;\r\n\r\n    if (!fileFixMap.has(broken.source)) {\r\n      fileFixMap.set(broken.source, new Map());\r\n    }\r\n    fileFixMap.get(broken.source)!.set(broken.link.target, suggestion);\r\n  }\r\n\r\n  const allResults = new Map<string, FixResult[]>();\r\n\r\n  // Process files in parallel\r\n  const promises = Array.from(fileFixMap.entries()).map(\n    async ([source, fixMap]) => {\n      const filePath = resolve(vaultPath, source);\n      const results = await autoFixBrokenLinks(fixMap, filePath);\n      allResults.set(source, results);\n    },\n  );\n\r\n  await Promise.all(promises);\r\n\r\n  return 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "dead-links",
-  "version": "0.2.0",
+  "version": "0.3.0",
   "description": "CLI tool to scan Obsidian vaults for broken links, orphan notes, and connection graphs",
   "type": "module",
   "bin": {
@@ -9,13 +9,6 @@
   "files": [
     "dist"
   ],
-  "scripts": {
-    "build": "tsup",
-    "dev": "tsup --watch",
-    "test": "vitest",
-    "lint": "eslint .",
-    "format": "prettier --write ."
-  },
   "keywords": [
     "obsidian",
     "vault",
@@ -39,17 +32,16 @@
   "engines": {
     "node": ">=22.0.0"
   },
-  "packageManager": "pnpm@11.0.8",
   "dependencies": {
     "commander": "^14.0.3",
     "fast-glob": "^3.3.3",
     "gray-matter": "^4.0.3",
+    "chalk": "^5.6.2",
     "ora": "^9.4.0"
   },
   "devDependencies": {
     "@eslint/js": "^10.0.1",
     "@types/node": "^25.8.0",
-    "chalk": "^5.6.2",
     "eslint": "^10.4.0",
     "eslint-config-prettier": "^10.1.8",
     "globals": "^17.6.0",
@@ -57,5 +49,12 @@
     "tsup": "^8.5.1",
     "typescript": "^6.0.3",
     "vitest": "^4.1.6"
+  },
+  "scripts": {
+    "build": "tsup",
+    "dev": "tsup --watch",
+    "test": "vitest",
+    "lint": "eslint .",
+    "format": "prettier --write ."
   }
-}
+}