dcmjs 0.18.8 → 0.19.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/build/dcmjs.es.js +653 -160
  2. package/build/dcmjs.es.js.map +1 -1
  3. package/build/dcmjs.js +653 -160
  4. package/build/dcmjs.js.map +1 -1
  5. package/package.json +1 -1
  6. package/test/mocks/minimal_fields_dataset.json +17 -0
  7. package/test/test_data.js +62 -4
  8. package/test/test_utilities.js +26 -1
package/build/dcmjs.es.js CHANGED
@@ -2711,14 +2711,49 @@ function () {
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  var dictionary={"(0000,0000)":{tag:"(0000,0000)",vr:"UL",name:"CommandGroupLength",vm:"1",version:"DICOM"},"(0000,0002)":{tag:"(0000,0002)",vr:"UI",name:"AffectedSOPClassUID",vm:"1",version:"DICOM"},"(0000,0003)":{tag:"(0000,0003)",vr:"UI",name:"RequestedSOPClassUID",vm:"1",version:"DICOM"},"(0000,0100)":{tag:"(0000,0100)",vr:"US",name:"CommandField",vm:"1",version:"DICOM"},"(0000,0110)":{tag:"(0000,0110)",vr:"US",name:"MessageID",vm:"1",version:"DICOM"},"(0000,0120)":{tag:"(0000,0120)",vr:"US",name:"MessageIDBeingRespondedTo",vm:"1",version:"DICOM"},"(0000,0600)":{tag:"(0000,0600)",vr:"AE",name:"MoveDestination",vm:"1",version:"DICOM"},"(0000,0700)":{tag:"(0000,0700)",vr:"US",name:"Priority",vm:"1",version:"DICOM"},"(0000,0800)":{tag:"(0000,0800)",vr:"US",name:"CommandDataSetType",vm:"1",version:"DICOM"},"(0000,0900)":{tag:"(0000,0900)",vr:"US",name:"Status",vm:"1",version:"DICOM"},"(0000,0901)":{tag:"(0000,0901)",vr:"AT",name:"OffendingElement",vm:"1-n",version:"DICOM"},"(0000,0902)":{tag:"(0000,0902)",vr:"LO",name:"ErrorComment",vm:"1",version:"DICOM"},"(0000,0903)":{tag:"(0000,0903)",vr:"US",name:"ErrorID",vm:"1",version:"DICOM"},"(0000,1000)":{tag:"(0000,1000)",vr:"UI",name:"AffectedSOPInstanceUID",vm:"1",version:"DICOM"},"(0000,1001)":{tag:"(0000,1001)",vr:"UI",name:"RequestedSOPInstanceUID",vm:"1",version:"DICOM"},"(0000,1002)":{tag:"(0000,1002)",vr:"US",name:"EventTypeID",vm:"1",version:"DICOM"},"(0000,1005)":{tag:"(0000,1005)",vr:"AT",name:"AttributeIdentifierList",vm:"1-n",version:"DICOM"},"(0000,1008)":{tag:"(0000,1008)",vr:"US",name:"ActionTypeID",vm:"1",version:"DICOM"},"(0000,1020)":{tag:"(0000,1020)",vr:"US",name:"NumberOfRemainingSuboperations",vm:"1",version:"DICOM"},"(0000,1021)":{tag:"(0000,1021)",vr:"US",name:"NumberOfCompletedSuboperations",vm:"1",version:"DICOM"},"(0000,1022)":{tag:"(0000,1022)",vr:"US",name:"NumberOfFailedSuboperations",vm:"1",version:"DICOM"},"(0000,1023)":{tag:"(0000,1023)",vr:"US",name:"NumberOfWarningSuboperations",vm:"1",version:"DICOM"},"(0000,1030)":{tag:"(0000,1030)",vr:"AE",name:"MoveOriginatorApplicationEntityTitle",vm:"1",version:"DICOM"},"(0000,1031)":{tag:"(0000,1031)",vr:"US",name:"MoveOriginatorMessageID",vm:"1",version:"DICOM"},"(0002,0000)":{tag:"(0002,0000)",vr:"UL",name:"FileMetaInformationGroupLength",vm:"1",version:"DICOM"},"(0002,0001)":{tag:"(0002,0001)",vr:"OB",name:"FileMetaInformationVersion",vm:"1",version:"DICOM"},"(0002,0002)":{tag:"(0002,0002)",vr:"UI",name:"MediaStorageSOPClassUID",vm:"1",version:"DICOM"},"(0002,0003)":{tag:"(0002,0003)",vr:"UI",name:"MediaStorageSOPInstanceUID",vm:"1",version:"DICOM"},"(0002,0010)":{tag:"(0002,0010)",vr:"UI",name:"TransferSyntaxUID",vm:"1",version:"DICOM"},"(0002,0012)":{tag:"(0002,0012)",vr:"UI",name:"ImplementationClassUID",vm:"1",version:"DICOM"},"(0002,0013)":{tag:"(0002,0013)",vr:"SH",name:"ImplementationVersionName",vm:"1",version:"DICOM"},"(0002,0016)":{tag:"(0002,0016)",vr:"AE",name:"SourceApplicationEntityTitle",vm:"1",version:"DICOM"},"(0002,0017)":{tag:"(0002,0017)",vr:"AE",name:"SendingApplicationEntityTitle",vm:"1",version:"DICOM"},"(0002,0018)":{tag:"(0002,0018)",vr:"AE",name:"ReceivingApplicationEntityTitle",vm:"1",version:"DICOM"},"(0002,0100)":{tag:"(0002,0100)",vr:"UI",name:"PrivateInformationCreatorUID",vm:"1",version:"DICOM"},"(0002,0102)":{tag:"(0002,0102)",vr:"OB",name:"PrivateInformation",vm:"1",version:"DICOM"},"(0004,1130)":{tag:"(0004,1130)",vr:"CS",name:"FileSetID",vm:"1",version:"DICOM"},"(0004,1141)":{tag:"(0004,1141)",vr:"CS",name:"FileSetDescriptorFileID",vm:"1-8",version:"DICOM"},"(0004,1142)":{tag:"(0004,1142)",vr:"CS",name:"SpecificCharacterSetOfFileSetDescriptorFile",vm:"1",version:"DICOM"},"(0004,1200)":{tag:"(0004,1200)",vr:"up",name:"OffsetOfTheFirstDirectoryRecordOfTheRootDirectoryEntity",vm:"1",version:"DICOM"},"(0004,1202)":{tag:"(0004,1202)",vr:"up",name:"OffsetOfTheLastDirectoryRecordOfTheRootDirectoryEntity",vm:"1",version:"DICOM"},"(0004,1212)":{tag:"(0004,1212)",vr:"US",name:"FileSetConsistencyFlag",vm:"1",version:"DICOM"},"(0004,1220)":{tag:"(0004,1220)",vr:"SQ",name:"DirectoryRecordSequence",vm:"1",version:"DICOM"},"(0004,1400)":{tag:"(0004,1400)",vr:"up",name:"OffsetOfTheNextDirectoryRecord",vm:"1",version:"DICOM"},"(0004,1410)":{tag:"(0004,1410)",vr:"US",name:"RecordInUseFlag",vm:"1",version:"DICOM"},"(0004,1420)":{tag:"(0004,1420)",vr:"up",name:"OffsetOfReferencedLowerLevelDirectoryEntity",vm:"1",version:"DICOM"},"(0004,1430)":{tag:"(0004,1430)",vr:"CS",name:"DirectoryRecordType",vm:"1",version:"DICOM"},"(0004,1432)":{tag:"(0004,1432)",vr:"UI",name:"PrivateRecordUID",vm:"1",version:"DICOM"},"(0004,1500)":{tag:"(0004,1500)",vr:"CS",name:"ReferencedFileID",vm:"1-8",version:"DICOM"},"(0004,1510)":{tag:"(0004,1510)",vr:"UI",name:"ReferencedSOPClassUIDInFile",vm:"1",version:"DICOM"},"(0004,1511)":{tag:"(0004,1511)",vr:"UI",name:"ReferencedSOPInstanceUIDInFile",vm:"1",version:"DICOM"},"(0004,1512)":{tag:"(0004,1512)",vr:"UI",name:"ReferencedTransferSyntaxUIDInFile",vm:"1",version:"DICOM"},"(0004,151A)":{tag:"(0004,151A)",vr:"UI",name:"ReferencedRelatedGeneralSOPClassUIDInFile",vm:"1-n",version:"DICOM"},"(0008,0005)":{tag:"(0008,0005)",vr:"CS",name:"SpecificCharacterSet",vm:"1-n",version:"DICOM"},"(0008,0006)":{tag:"(0008,0006)",vr:"SQ",name:"LanguageCodeSequence",vm:"1",version:"DICOM"},"(0008,0008)":{tag:"(0008,0008)",vr:"CS",name:"ImageType",vm:"2-n",version:"DICOM"},"(0008,0012)":{tag:"(0008,0012)",vr:"DA",name:"InstanceCreationDate",vm:"1",version:"DICOM"},"(0008,0013)":{tag:"(0008,0013)",vr:"TM",name:"InstanceCreationTime",vm:"1",version:"DICOM"},"(0008,0014)":{tag:"(0008,0014)",vr:"UI",name:"InstanceCreatorUID",vm:"1",version:"DICOM"},"(0008,0015)":{tag:"(0008,0015)",vr:"DT",name:"InstanceCoercionDateTime",vm:"1",version:"DICOM"},"(0008,0016)":{tag:"(0008,0016)",vr:"UI",name:"SOPClassUID",vm:"1",version:"DICOM"},"(0008,0018)":{tag:"(0008,0018)",vr:"UI",name:"SOPInstanceUID",vm:"1",version:"DICOM"},"(0008,001A)":{tag:"(0008,001A)",vr:"UI",name:"RelatedGeneralSOPClassUID",vm:"1-n",version:"DICOM"},"(0008,001B)":{tag:"(0008,001B)",vr:"UI",name:"OriginalSpecializedSOPClassUID",vm:"1",version:"DICOM"},"(0008,0020)":{tag:"(0008,0020)",vr:"DA",name:"StudyDate",vm:"1",version:"DICOM"},"(0008,0021)":{tag:"(0008,0021)",vr:"DA",name:"SeriesDate",vm:"1",version:"DICOM"},"(0008,0022)":{tag:"(0008,0022)",vr:"DA",name:"AcquisitionDate",vm:"1",version:"DICOM"},"(0008,0023)":{tag:"(0008,0023)",vr:"DA",name:"ContentDate",vm:"1",version:"DICOM"},"(0008,002A)":{tag:"(0008,002A)",vr:"DT",name:"AcquisitionDateTime",vm:"1",version:"DICOM"},"(0008,0030)":{tag:"(0008,0030)",vr:"TM",name:"StudyTime",vm:"1",version:"DICOM"},"(0008,0031)":{tag:"(0008,0031)",vr:"TM",name:"SeriesTime",vm:"1",version:"DICOM"},"(0008,0032)":{tag:"(0008,0032)",vr:"TM",name:"AcquisitionTime",vm:"1",version:"DICOM"},"(0008,0033)":{tag:"(0008,0033)",vr:"TM",name:"ContentTime",vm:"1",version:"DICOM"},"(0008,0050)":{tag:"(0008,0050)",vr:"SH",name:"AccessionNumber",vm:"1",version:"DICOM"},"(0008,0051)":{tag:"(0008,0051)",vr:"SQ",name:"IssuerOfAccessionNumberSequence",vm:"1",version:"DICOM"},"(0008,0052)":{tag:"(0008,0052)",vr:"CS",name:"QueryRetrieveLevel",vm:"1",version:"DICOM"},"(0008,0053)":{tag:"(0008,0053)",vr:"CS",name:"QueryRetrieveView",vm:"1",version:"DICOM"},"(0008,0054)":{tag:"(0008,0054)",vr:"AE",name:"RetrieveAETitle",vm:"1-n",version:"DICOM"},"(0008,0055)":{tag:"(0008,0055)",vr:"AE",name:"StationAETitle",vm:"1",version:"DICOM"},"(0008,0056)":{tag:"(0008,0056)",vr:"CS",name:"InstanceAvailability",vm:"1",version:"DICOM"},"(0008,0058)":{tag:"(0008,0058)",vr:"UI",name:"FailedSOPInstanceUIDList",vm:"1-n",version:"DICOM"},"(0008,0060)":{tag:"(0008,0060)",vr:"CS",name:"Modality",vm:"1",version:"DICOM"},"(0008,0061)":{tag:"(0008,0061)",vr:"CS",name:"ModalitiesInStudy",vm:"1-n",version:"DICOM"},"(0008,0062)":{tag:"(0008,0062)",vr:"UI",name:"SOPClassesInStudy",vm:"1-n",version:"DICOM"},"(0008,0063)":{tag:"(0008,0063)",vr:"SQ",name:"AnatomicRegionsInStudyCodeSequence",vm:"1",version:"DICOM"},"(0008,0064)":{tag:"(0008,0064)",vr:"CS",name:"ConversionType",vm:"1",version:"DICOM"},"(0008,0068)":{tag:"(0008,0068)",vr:"CS",name:"PresentationIntentType",vm:"1",version:"DICOM"},"(0008,0070)":{tag:"(0008,0070)",vr:"LO",name:"Manufacturer",vm:"1",version:"DICOM"},"(0008,0080)":{tag:"(0008,0080)",vr:"LO",name:"InstitutionName",vm:"1",version:"DICOM"},"(0008,0081)":{tag:"(0008,0081)",vr:"ST",name:"InstitutionAddress",vm:"1",version:"DICOM"},"(0008,0082)":{tag:"(0008,0082)",vr:"SQ",name:"InstitutionCodeSequence",vm:"1",version:"DICOM"},"(0008,0090)":{tag:"(0008,0090)",vr:"PN",name:"ReferringPhysicianName",vm:"1",version:"DICOM"},"(0008,0092)":{tag:"(0008,0092)",vr:"ST",name:"ReferringPhysicianAddress",vm:"1",version:"DICOM"},"(0008,0094)":{tag:"(0008,0094)",vr:"SH",name:"ReferringPhysicianTelephoneNumbers",vm:"1-n",version:"DICOM"},"(0008,0096)":{tag:"(0008,0096)",vr:"SQ",name:"ReferringPhysicianIdentificationSequence",vm:"1",version:"DICOM"},"(0008,009C)":{tag:"(0008,009C)",vr:"PN",name:"ConsultingPhysicianName",vm:"1-n",version:"DICOM"},"(0008,009D)":{tag:"(0008,009D)",vr:"SQ",name:"ConsultingPhysicianIdentificationSequence",vm:"1",version:"DICOM"},"(0008,0100)":{tag:"(0008,0100)",vr:"SH",name:"CodeValue",vm:"1",version:"DICOM"},"(0008,0101)":{tag:"(0008,0101)",vr:"LO",name:"ExtendedCodeValue",vm:"1",version:"DICOM/DICOS"},"(0008,0102)":{tag:"(0008,0102)",vr:"SH",name:"CodingSchemeDesignator",vm:"1",version:"DICOM"},"(0008,0103)":{tag:"(0008,0103)",vr:"SH",name:"CodingSchemeVersion",vm:"1",version:"DICOM"},"(0008,0104)":{tag:"(0008,0104)",vr:"LO",name:"CodeMeaning",vm:"1",version:"DICOM"},"(0008,0105)":{tag:"(0008,0105)",vr:"CS",name:"MappingResource",vm:"1",version:"DICOM"},"(0008,0106)":{tag:"(0008,0106)",vr:"DT",name:"ContextGroupVersion",vm:"1",version:"DICOM"},"(0008,0107)":{tag:"(0008,0107)",vr:"DT",name:"ContextGroupLocalVersion",vm:"1",version:"DICOM"},"(0008,0108)":{tag:"(0008,0108)",vr:"LT",name:"ExtendedCodeMea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CT_1.0",09)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",09)',vr:"LT",name:"ViewDirection",vm:"1",version:"PrivateTag"},'(0019,"TOSHIBA_MEC_CT_1.0",0a)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",0a)',vr:"LT",name:"OrientationSupineProne",vm:"1",version:"PrivateTag"},'(0019,"TOSHIBA_MEC_CT_1.0",0b)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",0b)',vr:"DS",name:"Unknown",vm:"1",version:"PrivateTag"},'(0019,"TOSHIBA_MEC_CT_1.0",0c)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",0c)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(0019,"TOSHIBA_MEC_CT_1.0",0d)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",0d)',vr:"TM",name:"Time",vm:"1",version:"PrivateTag"},'(0019,"TOSHIBA_MEC_CT_1.0",0e)':{tag:'(0019,"TOSHIBA_MEC_CT_1.0",0e)',vr:"DS",name:"Unknown",vm:"1",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",01)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",01)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",02)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",02)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",03)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",03)',vr:"IS",name:"Unknown",vm:"1",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",04)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",04)',vr:"IS",name:"Unknown",vm:"1",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",05)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",05)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",07)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",07)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",08)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",08)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",09)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",09)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",0a)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",0a)',vr:"LT",name:"Unknown",vm:"1",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",0b)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",0b)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",0c)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",0c)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"},'(7ff1,"TOSHIBA_MEC_CT_1.0",0d)':{tag:'(7ff1,"TOSHIBA_MEC_CT_1.0",0d)',vr:"US",name:"Unknown",vm:"1-n",version:"PrivateTag"}};
2713
2713
 
2714
+ /**
2715
+ * Adds accessors (set/get) to dest for every property in src.
2716
+ * @example
2717
+ * src = [{a:5,b:'string', c:null}]
2718
+ * addAccessors(src)
2719
+ * src.c = 'outerChange'
2720
+ * src[0].b='innerChange'
2721
+ *
2722
+ * assert src.a===5
2723
+ * assert src[0].c === 'outerChange'
2724
+ * assert src.b === 'innerChange'
2725
+ */
2726
+ var addAccessors = function addAccessors(dest, src) {
2727
+ Object.keys(src).forEach(function (key) {
2728
+ Object.defineProperty(dest, key, {
2729
+ get: function get() {
2730
+ return src[key];
2731
+ },
2732
+ set: function set(v) {
2733
+ src[key] = v;
2734
+ }
2735
+ });
2736
+ });
2737
+ };
2738
+
2714
2739
  var DicomMetaDictionary =
2715
2740
  /*#__PURE__*/
2716
2741
  function () {
2717
- function DicomMetaDictionary() {
2742
+ // intakes a custom dictionary that will be used to parse/denaturalize the dataset
2743
+ function DicomMetaDictionary(customDictionary) {
2718
2744
  _classCallCheck(this, DicomMetaDictionary);
2745
+
2746
+ this.customDictionary = customDictionary;
2747
+ this.customNameMap = DicomMetaDictionary._generateCustomNameMap(customDictionary);
2719
2748
  }
2720
2749
 
2721
- _createClass(DicomMetaDictionary, null, [{
2750
+ _createClass(DicomMetaDictionary, [{
2751
+ key: "denaturalizeDataset",
2752
+ // denaturalizes dataset using custom dictionary and nameMap
2753
+ value: function denaturalizeDataset(dataset) {
2754
+ return DicomMetaDictionary.denaturalizeDataset(dataset, this.customNameMap);
2755
+ }
2756
+ }], [{
2722
2757
  key: "punctuateTag",
2723
2758
  value: function punctuateTag(rawTag) {
2724
2759
  if (rawTag.indexOf(",") !== -1) {
@@ -2801,11 +2836,14 @@ function () {
2801
2836
  namedDataset[name] = data;
2802
2837
  });
2803
2838
  return namedDataset;
2804
- } // converts from DICOM JSON Model dataset
2805
- // to a natural dataset
2806
- // - sequences become lists
2807
- // - single element lists are replaced by their first element
2808
- // - object member names are dictionary, not group/element tag
2839
+ }
2840
+ /** converts from DICOM JSON Model dataset to a natural dataset
2841
+ * - sequences become lists
2842
+ * - single element lists are replaced by their first element,
2843
+ * with single element lists remaining lists, but being a
2844
+ * proxy for the child values, see addAccessors for examples
2845
+ * - object member names are dictionary, not group/element tag
2846
+ */
2809
2847
 
2810
2848
  }, {
2811
2849
  key: "naturalizeDataset",
@@ -2854,7 +2892,13 @@ function () {
2854
2892
  }
2855
2893
 
2856
2894
  if (naturalDataset[naturalName].length === 1) {
2857
- naturalDataset[naturalName] = naturalDataset[naturalName][0];
2895
+ var sqZero = naturalDataset[naturalName][0];
2896
+
2897
+ if (sqZero && _typeof(sqZero) === "object" && !sqZero.length) {
2898
+ addAccessors(naturalDataset[naturalName], sqZero);
2899
+ } else {
2900
+ naturalDataset[naturalName] = sqZero;
2901
+ }
2858
2902
  }
2859
2903
  }
2860
2904
  });
@@ -2881,15 +2925,17 @@ function () {
2881
2925
  return entry.constructor.name == "Number" ? String(entry) : entry;
2882
2926
  });
2883
2927
  return value;
2884
- }
2928
+ } // keep the static function to support previous calls to the class
2929
+
2885
2930
  }, {
2886
2931
  key: "denaturalizeDataset",
2887
2932
  value: function denaturalizeDataset(dataset) {
2933
+ var nameMap = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : DicomMetaDictionary.nameMap;
2888
2934
  var unnaturalDataset = {};
2889
2935
  Object.keys(dataset).forEach(function (naturalName) {
2890
2936
  // check if it's a sequence
2891
2937
  var name = naturalName;
2892
- var entry = DicomMetaDictionary.nameMap[name];
2938
+ var entry = nameMap[name];
2893
2939
 
2894
2940
  if (entry) {
2895
2941
  var dataValue = dataset[naturalName];
@@ -2921,7 +2967,7 @@ function () {
2921
2967
 
2922
2968
  for (var datasetIndex = 0; datasetIndex < dataItem.Value.length; datasetIndex++) {
2923
2969
  var nestedDataset = dataItem.Value[datasetIndex];
2924
- unnaturalValues.push(DicomMetaDictionary.denaturalizeDataset(nestedDataset));
2970
+ unnaturalValues.push(DicomMetaDictionary.denaturalizeDataset(nestedDataset, nameMap));
2925
2971
  }
2926
2972
 
2927
2973
  dataItem.Value = unnaturalValues;
@@ -2996,6 +3042,19 @@ function () {
2996
3042
  }
2997
3043
  });
2998
3044
  }
3045
+ }, {
3046
+ key: "_generateCustomNameMap",
3047
+ value: function _generateCustomNameMap(dictionary) {
3048
+ var nameMap = {};
3049
+ Object.keys(dictionary).forEach(function (tag) {
3050
+ var dict = dictionary[tag];
3051
+
3052
+ if (dict.version != "PrivateTag") {
3053
+ nameMap[dict.name] = dict;
3054
+ }
3055
+ });
3056
+ return nameMap;
3057
+ }
2999
3058
  }, {
3000
3059
  key: "_generateUIDMap",
3001
3060
  value: function _generateUIDMap() {
@@ -6225,7 +6284,7 @@ function (_ImageNormalizer) {
6225
6284
  ds.ImageType = ["ORIGINAL", "PRIMARY", "OTHER", "NONE"];
6226
6285
  }
6227
6286
 
6228
- ds.SharedFunctionalGroupsSequence.MRImageFrameType = {
6287
+ ds.SharedFunctionalGroupsSequence.MRImageFrameTypeSequence = {
6229
6288
  FrameType: ds.ImageType,
6230
6289
  PixelPresentation: "MONOCHROME",
6231
6290
  VolumetricProperties: "VOLUME",
@@ -7075,6 +7134,27 @@ var graphicTypeEquals = function graphicTypeEquals(graphicType) {
7075
7134
  };
7076
7135
  };
7077
7136
 
7137
+ var FINDING = {
7138
+ CodingSchemeDesignator: "DCM",
7139
+ CodeValue: "121071"
7140
+ };
7141
+ var FINDING_SITE = {
7142
+ CodingSchemeDesignator: "SCT",
7143
+ CodeValue: "363698007"
7144
+ };
7145
+ var FINDING_SITE_OLD = {
7146
+ CodingSchemeDesignator: "SRT",
7147
+ CodeValue: "G-C0E3"
7148
+ };
7149
+
7150
+ var codeValueMatch = function codeValueMatch(group, code, oldCode) {
7151
+ var ConceptNameCodeSequence = group.ConceptNameCodeSequence;
7152
+ if (!ConceptNameCodeSequence) return;
7153
+ var CodingSchemeDesignator = ConceptNameCodeSequence.CodingSchemeDesignator,
7154
+ CodeValue = ConceptNameCodeSequence.CodeValue;
7155
+ return CodingSchemeDesignator == code.CodingSchemeDesignator && CodeValue == code.CodeValue || oldCode && CodingSchemeDesignator == oldCode.CodingSchemeDesignator && CodeValue == oldCode.CodeValue;
7156
+ };
7157
+
7078
7158
  function getTID300ContentItem(tool, toolType, ReferencedSOPSequence, toolClass) {
7079
7159
  var args = toolClass.getTID300RepresentationArguments(tool);
7080
7160
  args.ReferencedSOPSequence = ReferencedSOPSequence;
@@ -7106,6 +7186,57 @@ function () {
7106
7186
  }
7107
7187
 
7108
7188
  _createClass(MeasurementReport, null, [{
7189
+ key: "getSetupMeasurementData",
7190
+ value: function getSetupMeasurementData(MeasurementGroup) {
7191
+ var ContentSequence = MeasurementGroup.ContentSequence;
7192
+ var contentSequenceArr = toArray(ContentSequence);
7193
+ var findingGroup = contentSequenceArr.find(function (group) {
7194
+ return codeValueMatch(group, FINDING);
7195
+ });
7196
+ var findingSiteGroups = contentSequenceArr.filter(function (group) {
7197
+ return codeValueMatch(group, FINDING_SITE, FINDING_SITE_OLD);
7198
+ }) || [];
7199
+ var NUMGroup = contentSequenceArr.find(function (group) {
7200
+ return group.ValueType === "NUM";
7201
+ });
7202
+ var SCOORDGroup = toArray(NUMGroup.ContentSequence).find(function (group) {
7203
+ return group.ValueType === "SCOORD";
7204
+ });
7205
+ var ReferencedSOPSequence = SCOORDGroup.ContentSequence.ReferencedSOPSequence;
7206
+ var ReferencedSOPInstanceUID = ReferencedSOPSequence.ReferencedSOPInstanceUID,
7207
+ ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
7208
+ var defaultState = {
7209
+ sopInstanceUid: ReferencedSOPInstanceUID,
7210
+ frameIndex: ReferencedFrameNumber || 1,
7211
+ complete: true,
7212
+ finding: findingGroup ? findingGroup.ConceptCodeSequence : undefined,
7213
+ findingSites: findingSiteGroups.map(function (fsg) {
7214
+ return _objectSpread2({}, fsg.ConceptCodeSequence);
7215
+ })
7216
+ };
7217
+
7218
+ if (defaultState.finding) {
7219
+ defaultState.description = defaultState.finding.CodeMeaning;
7220
+ }
7221
+
7222
+ var findingSite = defaultState.findingSites && defaultState.findingSites[0];
7223
+
7224
+ if (findingSite) {
7225
+ defaultState.location = findingSite[0] && findingSite[0].CodeMeaning || findingSite.CodeMeaning;
7226
+ }
7227
+
7228
+ return {
7229
+ defaultState: defaultState,
7230
+ findingGroup: findingGroup,
7231
+ findingSiteGroups: findingSiteGroups,
7232
+ NUMGroup: NUMGroup,
7233
+ SCOORDGroup: SCOORDGroup,
7234
+ ReferencedSOPSequence: ReferencedSOPSequence,
7235
+ ReferencedSOPInstanceUID: ReferencedSOPInstanceUID,
7236
+ ReferencedFrameNumber: ReferencedFrameNumber
7237
+ };
7238
+ }
7239
+ }, {
7109
7240
  key: "generateReport",
7110
7241
  value: function generateReport(toolState, metadataProvider, options) {
7111
7242
  // ToolState for array of imageIDs to a Report
@@ -7350,8 +7481,8 @@ function () {
7350
7481
  RelationshipType: "CONTAINS",
7351
7482
  ValueType: "CODE",
7352
7483
  ConceptNameCodeSequence: {
7353
- CodeValue: "G-C0E3",
7354
- CodingSchemeDesignator: "SRT",
7484
+ CodeValue: "363698007",
7485
+ CodingSchemeDesignator: "SCT",
7355
7486
  CodeMeaning: "Finding Site"
7356
7487
  },
7357
7488
  ConceptCodeSequence: {
@@ -7427,8 +7558,6 @@ function (_TID300Measurement) {
7427
7558
  var CORNERSTONE_4_TAG = "cornerstoneTools@^4.0.0";
7428
7559
 
7429
7560
  var LENGTH = "Length";
7430
- var FINDING = "121071";
7431
- var FINDING_SITE = "G-C0E3";
7432
7561
 
7433
7562
  var Length$1 =
7434
7563
  /*#__PURE__*/
@@ -7441,25 +7570,12 @@ function () {
7441
7570
  _createClass(Length, null, [{
7442
7571
  key: "getMeasurementData",
7443
7572
  value: function getMeasurementData(MeasurementGroup) {
7444
- var ContentSequence = MeasurementGroup.ContentSequence;
7445
- var findingGroup = toArray(ContentSequence).find(function (group) {
7446
- return group.ConceptNameCodeSequence.CodeValue === FINDING;
7447
- });
7448
- var findingSiteGroups = toArray(ContentSequence).filter(function (group) {
7449
- return group.ConceptNameCodeSequence.CodeValue === FINDING_SITE;
7450
- });
7451
- var NUMGroup = toArray(ContentSequence).find(function (group) {
7452
- return group.ValueType === "NUM";
7453
- });
7454
- var SCOORDGroup = toArray(NUMGroup.ContentSequence).find(function (group) {
7455
- return group.ValueType === "SCOORD";
7456
- });
7457
- var ReferencedSOPSequence = SCOORDGroup.ContentSequence.ReferencedSOPSequence;
7458
- var ReferencedSOPInstanceUID = ReferencedSOPSequence.ReferencedSOPInstanceUID,
7459
- ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
7460
- var lengthState = {
7461
- sopInstanceUid: ReferencedSOPInstanceUID,
7462
- frameIndex: ReferencedFrameNumber || 1,
7573
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
7574
+ defaultState = _MeasurementReport$ge.defaultState,
7575
+ NUMGroup = _MeasurementReport$ge.NUMGroup,
7576
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
7577
+
7578
+ var state = _objectSpread2({}, defaultState, {
7463
7579
  length: NUMGroup.MeasuredValueSequence.NumericValue,
7464
7580
  toolType: Length.toolType,
7465
7581
  handles: {
@@ -7472,20 +7588,16 @@ function () {
7472
7588
  allowedOutsideImage: true,
7473
7589
  hasBoundingBox: true
7474
7590
  }
7475
- },
7476
- finding: findingGroup ? findingGroup.ConceptCodeSequence : undefined,
7477
- findingSites: findingSiteGroups.map(function (fsg) {
7478
- return _objectSpread2({}, fsg.ConceptCodeSequence);
7479
- })
7480
- };
7591
+ }
7592
+ });
7481
7593
 
7482
7594
  var _SCOORDGroup$GraphicD = _slicedToArray(SCOORDGroup.GraphicData, 4);
7483
7595
 
7484
- lengthState.handles.start.x = _SCOORDGroup$GraphicD[0];
7485
- lengthState.handles.start.y = _SCOORDGroup$GraphicD[1];
7486
- lengthState.handles.end.x = _SCOORDGroup$GraphicD[2];
7487
- lengthState.handles.end.y = _SCOORDGroup$GraphicD[3];
7488
- return lengthState;
7596
+ state.handles.start.x = _SCOORDGroup$GraphicD[0];
7597
+ state.handles.start.y = _SCOORDGroup$GraphicD[1];
7598
+ state.handles.end.x = _SCOORDGroup$GraphicD[2];
7599
+ state.handles.end.y = _SCOORDGroup$GraphicD[3];
7600
+ return state;
7489
7601
  }
7490
7602
  }, {
7491
7603
  key: "getTID300RepresentationArguments",
@@ -7545,11 +7657,11 @@ MeasurementReport.registerTool(Length$1);
7545
7657
  function expandPoints(points) {
7546
7658
  var allPoints = [];
7547
7659
  points.forEach(function (point) {
7548
- allPoints.push(point[0]);
7549
- allPoints.push(point[1]);
7660
+ allPoints.push(point[0] || point.x);
7661
+ allPoints.push(point[1] || point.y);
7550
7662
 
7551
- if (point[2] !== undefined) {
7552
- allPoints.push(point[2]);
7663
+ if (point[2] !== undefined || point.z !== undefined) {
7664
+ allPoints.push(point[2] || point.z);
7553
7665
  }
7554
7666
  });
7555
7667
  return allPoints;
@@ -7571,24 +7683,20 @@ function (_TID300Measurement) {
7571
7683
  value: function contentItem() {
7572
7684
  var _this$props = this.props,
7573
7685
  points = _this$props.points,
7686
+ area = _this$props.area,
7574
7687
  ReferencedSOPSequence = _this$props.ReferencedSOPSequence,
7575
7688
  _this$props$use3DSpat = _this$props.use3DSpatialCoordinates,
7576
- use3DSpatialCoordinates = _this$props$use3DSpat === void 0 ? false : _this$props$use3DSpat; // Combine all lengths to save the perimeter
7577
- // @ToDO The permiter has to be implemented
7578
- // const reducer = (accumulator, currentValue) => accumulator + currentValue;
7579
- // const perimeter = lengths.reduce(reducer);
7580
-
7581
- var perimeter = {};
7689
+ use3DSpatialCoordinates = _this$props$use3DSpat === void 0 ? false : _this$props$use3DSpat,
7690
+ perimeter = _this$props.perimeter;
7582
7691
  var GraphicData = expandPoints(points); // TODO: Add Mean and STDev value of (modality?) pixels
7583
7692
 
7584
7693
  return this.getMeasurement([{
7585
7694
  RelationshipType: "CONTAINS",
7586
7695
  ValueType: "NUM",
7587
7696
  ConceptNameCodeSequence: {
7588
- CodeValue: "G-A197",
7589
- CodingSchemeDesignator: "SRT",
7590
- CodeMeaning: "Perimeter" // TODO: Look this up from a Code Meaning dictionary
7591
-
7697
+ CodeValue: "131191004",
7698
+ CodingSchemeDesignator: "SCT",
7699
+ CodeMeaning: "Perimeter"
7592
7700
  },
7593
7701
  MeasuredValueSequence: {
7594
7702
  MeasurementUnitsCodeSequence: {
@@ -7627,7 +7735,7 @@ function (_TID300Measurement) {
7627
7735
  CodingSchemeVersion: "1.4",
7628
7736
  CodeMeaning: "SquareMilliMeter"
7629
7737
  },
7630
- NumericValue: perimeter
7738
+ NumericValue: area
7631
7739
  },
7632
7740
  ContentSequence: {
7633
7741
  RelationshipType: "INFERRED FROM",
@@ -7647,59 +7755,100 @@ function (_TID300Measurement) {
7647
7755
  return Polyline;
7648
7756
  }(TID300Measurement);
7649
7757
 
7650
- var Freehand =
7758
+ var FreehandRoi =
7651
7759
  /*#__PURE__*/
7652
7760
  function () {
7653
- function Freehand() {
7654
- _classCallCheck(this, Freehand);
7761
+ function FreehandRoi() {
7762
+ _classCallCheck(this, FreehandRoi);
7655
7763
  }
7656
7764
 
7657
- _createClass(Freehand, null, [{
7658
- key: "measurementContentToLengthState",
7659
- value: function measurementContentToLengthState(groupItemContent) {
7660
- var content = groupItemContent.ContentSequence;
7661
- var ReferencedSOPSequence = content.ContentSequence.ReferencedSOPSequence;
7662
- var ReferencedSOPInstanceUID = ReferencedSOPSequence.ReferencedSOPInstanceUID,
7663
- ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
7664
- var state = {
7665
- sopInstanceUid: ReferencedSOPInstanceUID,
7666
- frameIndex: ReferencedFrameNumber || 0,
7667
- toolType: Freehand.toolType
7668
- }; // TODO: To be implemented!
7669
- // Needs to add points, lengths
7765
+ _createClass(FreehandRoi, null, [{
7766
+ key: "getMeasurementData",
7767
+ value: function getMeasurementData(MeasurementGroup) {
7768
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
7769
+ defaultState = _MeasurementReport$ge.defaultState,
7770
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
7670
7771
 
7671
- return state;
7672
- } // TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
7772
+ var state = _objectSpread2({}, defaultState, {
7773
+ toolType: FreehandRoi.toolType,
7774
+ handles: {
7775
+ points: [],
7776
+ textBox: {
7777
+ active: false,
7778
+ hasMoved: false,
7779
+ movesIndependently: false,
7780
+ drawnIndependently: true,
7781
+ allowedOutsideImage: true,
7782
+ hasBoundingBox: true
7783
+ }
7784
+ },
7785
+ color: undefined,
7786
+ invalidated: true
7787
+ });
7673
7788
 
7674
- }, {
7675
- key: "getMeasurementData",
7676
- value: function getMeasurementData(measurementContent) {
7677
- return measurementContent.map(Freehand.measurementContentToLengthState);
7789
+ var GraphicData = SCOORDGroup.GraphicData;
7790
+
7791
+ for (var i = 0; i < GraphicData.length; i += 2) {
7792
+ state.handles.points.push({
7793
+ x: GraphicData[i],
7794
+ y: GraphicData[i + 1]
7795
+ });
7796
+ }
7797
+
7798
+ return state;
7678
7799
  }
7679
7800
  }, {
7680
7801
  key: "getTID300RepresentationArguments",
7681
7802
  value: function getTID300RepresentationArguments()
7682
7803
  /*tool*/
7683
7804
  {
7684
- // TO BE IMPLEMENTED
7805
+ var _tool = tool,
7806
+ handles = _tool.handles,
7807
+ finding = _tool.finding,
7808
+ findingSites = _tool.findingSites,
7809
+ cachedStats = _tool.cachedStats;
7810
+ var points = handles.points;
7811
+ var _cachedStats$area = cachedStats.area,
7812
+ area = _cachedStats$area === void 0 ? 0 : _cachedStats$area,
7813
+ _cachedStats$perimete = cachedStats.perimeter,
7814
+ perimeter = _cachedStats$perimete === void 0 ? 0 : _cachedStats$perimete;
7815
+ var trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:FreehandRoi";
7685
7816
  return {
7686
- /*points, lengths*/
7817
+ points: points,
7818
+ area: area,
7819
+ perimeter: perimeter,
7820
+ trackingIdentifierTextValue: trackingIdentifierTextValue,
7821
+ finding: finding,
7822
+ findingSites: findingSites || []
7687
7823
  };
7688
7824
  }
7689
7825
  }]);
7690
7826
 
7691
- return Freehand;
7827
+ return FreehandRoi;
7692
7828
  }();
7693
7829
 
7694
- Freehand.toolType = "Freehand";
7695
- Freehand.utilityToolType = "Freehand";
7696
- Freehand.TID300Representation = Polyline;
7830
+ FreehandRoi.toolType = "FreehandRoi";
7831
+ FreehandRoi.utilityToolType = "FreehandRoi";
7832
+ FreehandRoi.TID300Representation = Polyline;
7833
+
7834
+ FreehandRoi.isValidCornerstoneTrackingIdentifier = function (TrackingIdentifier) {
7835
+ if (!TrackingIdentifier.includes(":")) {
7836
+ return false;
7837
+ }
7838
+
7839
+ var _TrackingIdentifier$s = TrackingIdentifier.split(":"),
7840
+ _TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
7841
+ cornerstone4Tag = _TrackingIdentifier$s2[0],
7842
+ toolType = _TrackingIdentifier$s2[1];
7843
+
7844
+ if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
7845
+ return false;
7846
+ }
7697
7847
 
7698
- Freehand.isValidCornerstoneTrackingIdentifier = function (TrackingIdentifier) {
7699
- return false; // TODO
7848
+ return toolType === FreehandRoi.toolType;
7700
7849
  };
7701
7850
 
7702
- MeasurementReport.registerTool(Freehand);
7851
+ MeasurementReport.registerTool(FreehandRoi);
7703
7852
 
7704
7853
  var Bidirectional =
7705
7854
  /*#__PURE__*/
@@ -8024,8 +8173,6 @@ function (_TID300Measurement) {
8024
8173
  }(TID300Measurement);
8025
8174
 
8026
8175
  var ELLIPTICALROI = "EllipticalRoi";
8027
- var FINDING$2 = "121071";
8028
- var FINDING_SITE$2 = "G-C0E3";
8029
8176
 
8030
8177
  var EllipticalRoi =
8031
8178
  /*#__PURE__*/
@@ -8038,19 +8185,11 @@ function () {
8038
8185
  _createClass(EllipticalRoi, null, [{
8039
8186
  key: "getMeasurementData",
8040
8187
  value: function getMeasurementData(MeasurementGroup) {
8041
- var ContentSequence = MeasurementGroup.ContentSequence;
8042
- var findingGroup = toArray(ContentSequence).find(function (group) {
8043
- return group.ConceptNameCodeSequence.CodeValue === FINDING$2;
8044
- });
8045
- var findingSiteGroups = toArray(ContentSequence).filter(function (group) {
8046
- return group.ConceptNameCodeSequence.CodeValue === FINDING_SITE$2;
8047
- });
8048
- var NUMGroup = toArray(ContentSequence).find(function (group) {
8049
- return group.ValueType === "NUM";
8050
- });
8051
- var SCOORDGroup = toArray(NUMGroup.ContentSequence).find(function (group) {
8052
- return group.ValueType === "SCOORD";
8053
- });
8188
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
8189
+ defaultState = _MeasurementReport$ge.defaultState,
8190
+ NUMGroup = _MeasurementReport$ge.NUMGroup,
8191
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
8192
+
8054
8193
  var GraphicData = SCOORDGroup.GraphicData;
8055
8194
  var majorAxis = [{
8056
8195
  x: GraphicData[0],
@@ -8083,12 +8222,8 @@ function () {
8083
8222
  x: majorAxis[1].x - minorAxisDirection.x * halfMinorAxisLength,
8084
8223
  y: majorAxis[1].y - minorAxisDirection.y * halfMinorAxisLength
8085
8224
  };
8086
- var ReferencedSOPSequence = SCOORDGroup.ContentSequence.ReferencedSOPSequence;
8087
- var ReferencedSOPInstanceUID = ReferencedSOPSequence.ReferencedSOPInstanceUID,
8088
- ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
8089
- var state = {
8090
- sopInstanceUid: ReferencedSOPInstanceUID,
8091
- frameIndex: ReferencedFrameNumber || 0,
8225
+
8226
+ var state = _objectSpread2({}, defaultState, {
8092
8227
  toolType: EllipticalRoi.toolType,
8093
8228
  active: false,
8094
8229
  cachedStats: {
@@ -8117,12 +8252,9 @@ function () {
8117
8252
  }
8118
8253
  },
8119
8254
  invalidated: true,
8120
- visible: true,
8121
- finding: findingGroup ? findingGroup.ConceptCodeSequence : undefined,
8122
- findingSites: findingSiteGroups.map(function (fsg) {
8123
- return _objectSpread2({}, fsg.ConceptCodeSequence);
8124
- })
8125
- };
8255
+ visible: true
8256
+ });
8257
+
8126
8258
  return state;
8127
8259
  }
8128
8260
  }, {
@@ -8241,7 +8373,14 @@ function (_TID300Measurement) {
8241
8373
  ReferencedSOPSequence = _this$props.ReferencedSOPSequence,
8242
8374
  _this$props$use3DSpat = _this$props.use3DSpatialCoordinates,
8243
8375
  use3DSpatialCoordinates = _this$props$use3DSpat === void 0 ? false : _this$props$use3DSpat;
8244
- var GraphicData = use3DSpatialCoordinates ? [points[0].x, points[0].y, points[0].z] : [points[0].x, points[0].y];
8376
+ var GraphicData = use3DSpatialCoordinates ? [points[0].x, points[0].y, points[0].z] : [points[0].x, points[0].y]; // Allow storing another point as part of an indicator showing a single point
8377
+
8378
+ if (points.length == 2) {
8379
+ GraphicData.push(points[1].x);
8380
+ GraphicData.push(points[1].y);
8381
+ if (use3DSpatialCoordinates) GraphicData.push(points[1].z);
8382
+ }
8383
+
8245
8384
  return this.getMeasurement([{
8246
8385
  RelationshipType: "CONTAINS",
8247
8386
  ValueType: "NUM",
@@ -8270,8 +8409,6 @@ function (_TID300Measurement) {
8270
8409
  }(TID300Measurement);
8271
8410
 
8272
8411
  var ARROW_ANNOTATE = "ArrowAnnotate";
8273
- var FINDING$3 = "121071";
8274
- var FINDING_SITE$3 = "G-C0E3";
8275
8412
  var CORNERSTONEFREETEXT = "CORNERSTONEFREETEXT";
8276
8413
 
8277
8414
  var ArrowAnnotate =
@@ -8279,33 +8416,20 @@ var ArrowAnnotate =
8279
8416
  function () {
8280
8417
  function ArrowAnnotate() {
8281
8418
  _classCallCheck(this, ArrowAnnotate);
8282
- } // TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
8283
-
8419
+ }
8284
8420
 
8285
8421
  _createClass(ArrowAnnotate, null, [{
8286
8422
  key: "getMeasurementData",
8287
8423
  value: function getMeasurementData(MeasurementGroup) {
8288
- var ContentSequence = MeasurementGroup.ContentSequence;
8289
- var NUMGroup = toArray(ContentSequence).find(function (group) {
8290
- return group.ValueType === "NUM";
8291
- });
8292
- var SCOORDGroup = toArray(NUMGroup.ContentSequence).find(function (group) {
8293
- return group.ValueType === "SCOORD";
8294
- });
8295
- var findingGroup = toArray(ContentSequence).find(function (group) {
8296
- return group.ConceptNameCodeSequence.CodeValue === FINDING$3;
8297
- });
8298
- var findingSiteGroups = toArray(ContentSequence).filter(function (group) {
8299
- return group.ConceptNameCodeSequence.CodeValue === FINDING_SITE$3;
8300
- });
8424
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
8425
+ defaultState = _MeasurementReport$ge.defaultState,
8426
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup,
8427
+ findingGroup = _MeasurementReport$ge.findingGroup;
8428
+
8301
8429
  var text = findingGroup.ConceptCodeSequence.CodeMeaning;
8302
8430
  var GraphicData = SCOORDGroup.GraphicData;
8303
- var ReferencedSOPSequence = SCOORDGroup.ContentSequence.ReferencedSOPSequence;
8304
- var ReferencedSOPInstanceUID = ReferencedSOPSequence.ReferencedSOPInstanceUID,
8305
- ReferencedFrameNumber = ReferencedSOPSequence.ReferencedFrameNumber;
8306
- var state = {
8307
- sopInstanceUid: ReferencedSOPInstanceUID,
8308
- frameIndex: ReferencedFrameNumber || 0,
8431
+
8432
+ var state = _objectSpread2({}, defaultState, {
8309
8433
  toolType: ArrowAnnotate.toolType,
8310
8434
  active: false,
8311
8435
  handles: {
@@ -8315,11 +8439,11 @@ function () {
8315
8439
  highlight: true,
8316
8440
  active: false
8317
8441
  },
8318
- // TODO: How do we choose where the end goes?
8319
- // Just put it pointing from the bottom right for now?
8442
+ // Use a generic offset if the stored data doesn't have the endpoint, otherwise
8443
+ // use the actual endpoint.
8320
8444
  end: {
8321
- x: GraphicData[0] + 20,
8322
- y: GraphicData[1] + 20,
8445
+ x: GraphicData.length == 4 ? GraphicData[2] : GraphicData[0] + 20,
8446
+ y: GraphicData.length == 4 ? GraphicData[3] : GraphicData[1] + 20,
8323
8447
  highlight: true,
8324
8448
  active: false
8325
8449
  },
@@ -8333,18 +8457,15 @@ function () {
8333
8457
  },
8334
8458
  invalidated: true,
8335
8459
  text: text,
8336
- visible: true,
8337
- finding: findingGroup ? findingGroup.ConceptCodeSequence : undefined,
8338
- findingSites: findingSiteGroups.map(function (fsg) {
8339
- return _objectSpread2({}, fsg.ConceptCodeSequence);
8340
- })
8341
- };
8460
+ visible: true
8461
+ });
8462
+
8342
8463
  return state;
8343
8464
  }
8344
8465
  }, {
8345
8466
  key: "getTID300RepresentationArguments",
8346
8467
  value: function getTID300RepresentationArguments(tool) {
8347
- var points = [tool.handles.start];
8468
+ var points = [tool.handles.start, tool.handles.end];
8348
8469
  var finding = tool.finding,
8349
8470
  findingSites = tool.findingSites;
8350
8471
  var TID300RepresentationArguments = {
@@ -8953,7 +9074,7 @@ function nearlyEqual(a, b, epsilon) {
8953
9074
  } else if (a == 0 || b == 0 || absA + absB < Number.EPSILON) {
8954
9075
  // a or b is zero or both are extremely close to it
8955
9076
  // relative error is less meaningful here
8956
- return diff < epsilon * Number.EPSILON;
9077
+ return diff < epsilon;
8957
9078
  } else {
8958
9079
  // use relative error
8959
9080
  return diff / Math.min(absA + absB, Number.MAX_VALUE) < epsilon;
@@ -12637,7 +12758,7 @@ function insertPixelDataPlanar(segmentsOnFrame, segmentsOnFrameArray, labelmapBu
12637
12758
 
12638
12759
  for (var j = 0, len = alignedPixelDataI.data.length; j < len; ++j) {
12639
12760
  if (data[j]) {
12640
- for (var x = j + 1; x < len; ++x) {
12761
+ for (var x = j; x < len; ++x) {
12641
12762
  if (data[x]) {
12642
12763
  labelmap2DView[x] = segmentIndex;
12643
12764
  }
@@ -12675,7 +12796,7 @@ function checkOrientation(multiframe, validOrientations, sourceDataDimensions, t
12675
12796
  return "Planar";
12676
12797
  }
12677
12798
 
12678
- if (checkIfPerpendicular(iop, validOrientations[0], tolerance) && sourceDataDimensions.includes(multiframe.Rows) && sourceDataDimensions.includes(multiframe.Rows)) {
12799
+ if (checkIfPerpendicular(iop, validOrientations[0], tolerance) && sourceDataDimensions.includes(multiframe.Rows) && sourceDataDimensions.includes(multiframe.Columns)) {
12679
12800
  // Perpendicular and fits on same grid.
12680
12801
  return "Perpendicular";
12681
12802
  }
@@ -12973,14 +13094,384 @@ function fillSegmentation$1(segmentation, inputLabelmaps3D) {
12973
13094
  console.warn("No generateSegmentation adapater for cornerstone version ".concat(cornerstoneToolsVersion, ", exiting."));
12974
13095
  }
12975
13096
 
13097
+ var CobbAngle =
13098
+ /*#__PURE__*/
13099
+ function (_TID300Measurement) {
13100
+ _inherits(CobbAngle, _TID300Measurement);
13101
+
13102
+ function CobbAngle() {
13103
+ _classCallCheck(this, CobbAngle);
13104
+
13105
+ return _possibleConstructorReturn(this, _getPrototypeOf(CobbAngle).apply(this, arguments));
13106
+ }
13107
+
13108
+ _createClass(CobbAngle, [{
13109
+ key: "contentItem",
13110
+ value: function contentItem() {
13111
+ var _this$props = this.props,
13112
+ point1 = _this$props.point1,
13113
+ point2 = _this$props.point2,
13114
+ point3 = _this$props.point3,
13115
+ point4 = _this$props.point4,
13116
+ rAngle = _this$props.rAngle,
13117
+ ReferencedSOPSequence = _this$props.ReferencedSOPSequence;
13118
+ return this.getMeasurement([{
13119
+ RelationshipType: "CONTAINS",
13120
+ ValueType: "NUM",
13121
+ ConceptNameCodeSequence: {
13122
+ CodeValue: "285285000",
13123
+ CodingSchemeDesignator: "SCT",
13124
+ CodeMeaning: "Cobb angle"
13125
+ },
13126
+ MeasuredValueSequence: {
13127
+ MeasurementUnitsCodeSequence: {
13128
+ CodeValue: "deg",
13129
+ CodingSchemeDesignator: "UCUM",
13130
+ CodingSchemeVersion: "1.4",
13131
+ CodeMeaning: "\xB0"
13132
+ },
13133
+ NumericValue: rAngle
13134
+ },
13135
+ ContentSequence: {
13136
+ RelationshipType: "INFERRED FROM",
13137
+ ValueType: "SCOORD",
13138
+ GraphicType: "POLYLINE",
13139
+ GraphicData: [point1.x, point1.y, point2.x, point2.y, point3.x, point3.y, point4.x, point4.y],
13140
+ ContentSequence: {
13141
+ RelationshipType: "SELECTED FROM",
13142
+ ValueType: "IMAGE",
13143
+ ReferencedSOPSequence: ReferencedSOPSequence
13144
+ }
13145
+ }
13146
+ }]);
13147
+ }
13148
+ }]);
13149
+
13150
+ return CobbAngle;
13151
+ }(TID300Measurement);
13152
+
13153
+ var COBB_ANGLE = "CobbAngle";
13154
+
13155
+ var CobbAngle$1 =
13156
+ /*#__PURE__*/
13157
+ function () {
13158
+ function CobbAngle() {
13159
+ _classCallCheck(this, CobbAngle);
13160
+ } // TODO: this function is required for all Cornerstone Tool Adapters, since it is called by MeasurementReport.
13161
+
13162
+
13163
+ _createClass(CobbAngle, null, [{
13164
+ key: "getMeasurementData",
13165
+ value: function getMeasurementData(MeasurementGroup) {
13166
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
13167
+ defaultState = _MeasurementReport$ge.defaultState,
13168
+ NUMGroup = _MeasurementReport$ge.NUMGroup,
13169
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
13170
+
13171
+ var state = _objectSpread2({}, defaultState, {
13172
+ rAngle: NUMGroup.MeasuredValueSequence.NumericValue,
13173
+ toolType: CobbAngle.toolType,
13174
+ handles: {
13175
+ start: {},
13176
+ end: {},
13177
+ start2: {
13178
+ highlight: true,
13179
+ drawnIndependently: true
13180
+ },
13181
+ end2: {
13182
+ highlight: true,
13183
+ drawnIndependently: true
13184
+ },
13185
+ textBox: {
13186
+ hasMoved: false,
13187
+ movesIndependently: false,
13188
+ drawnIndependently: true,
13189
+ allowedOutsideImage: true,
13190
+ hasBoundingBox: true
13191
+ }
13192
+ }
13193
+ });
13194
+
13195
+ var _SCOORDGroup$GraphicD = _slicedToArray(SCOORDGroup.GraphicData, 8);
13196
+
13197
+ state.handles.start.x = _SCOORDGroup$GraphicD[0];
13198
+ state.handles.start.y = _SCOORDGroup$GraphicD[1];
13199
+ state.handles.end.x = _SCOORDGroup$GraphicD[2];
13200
+ state.handles.end.y = _SCOORDGroup$GraphicD[3];
13201
+ state.handles.start2.x = _SCOORDGroup$GraphicD[4];
13202
+ state.handles.start2.y = _SCOORDGroup$GraphicD[5];
13203
+ state.handles.end2.x = _SCOORDGroup$GraphicD[6];
13204
+ state.handles.end2.y = _SCOORDGroup$GraphicD[7];
13205
+ return state;
13206
+ }
13207
+ }, {
13208
+ key: "getTID300RepresentationArguments",
13209
+ value: function getTID300RepresentationArguments(tool) {
13210
+ var handles = tool.handles,
13211
+ finding = tool.finding,
13212
+ findingSites = tool.findingSites;
13213
+ var point1 = handles.start;
13214
+ var point2 = handles.end;
13215
+ var point3 = handles.start2;
13216
+ var point4 = handles.end2;
13217
+ var rAngle = tool.rAngle;
13218
+ var trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:CobbAngle";
13219
+ return {
13220
+ point1: point1,
13221
+ point2: point2,
13222
+ point3: point3,
13223
+ point4: point4,
13224
+ rAngle: rAngle,
13225
+ trackingIdentifierTextValue: trackingIdentifierTextValue,
13226
+ finding: finding,
13227
+ findingSites: findingSites || []
13228
+ };
13229
+ }
13230
+ }]);
13231
+
13232
+ return CobbAngle;
13233
+ }();
13234
+
13235
+ CobbAngle$1.toolType = COBB_ANGLE;
13236
+ CobbAngle$1.utilityToolType = COBB_ANGLE;
13237
+ CobbAngle$1.TID300Representation = CobbAngle;
13238
+
13239
+ CobbAngle$1.isValidCornerstoneTrackingIdentifier = function (TrackingIdentifier) {
13240
+ if (!TrackingIdentifier.includes(":")) {
13241
+ return false;
13242
+ }
13243
+
13244
+ var _TrackingIdentifier$s = TrackingIdentifier.split(":"),
13245
+ _TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
13246
+ cornerstone4Tag = _TrackingIdentifier$s2[0],
13247
+ toolType = _TrackingIdentifier$s2[1];
13248
+
13249
+ if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
13250
+ return false;
13251
+ }
13252
+
13253
+ return toolType === COBB_ANGLE;
13254
+ };
13255
+
13256
+ MeasurementReport.registerTool(CobbAngle$1);
13257
+
13258
+ var ANGLE = "Angle";
13259
+
13260
+ var Angle =
13261
+ /*#__PURE__*/
13262
+ function () {
13263
+ function Angle() {
13264
+ _classCallCheck(this, Angle);
13265
+ }
13266
+ /**
13267
+ * Generate TID300 measurement data for a plane angle measurement - use a CobbAngle, but label it as Angle
13268
+ * @param MeasurementGroup
13269
+ * @returns
13270
+ */
13271
+
13272
+
13273
+ _createClass(Angle, null, [{
13274
+ key: "getMeasurementData",
13275
+ value: function getMeasurementData(MeasurementGroup) {
13276
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
13277
+ defaultState = _MeasurementReport$ge.defaultState,
13278
+ NUMGroup = _MeasurementReport$ge.NUMGroup,
13279
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
13280
+
13281
+ var state = _objectSpread2({}, defaultState, {
13282
+ rAngle: NUMGroup.MeasuredValueSequence.NumericValue,
13283
+ toolType: Angle.toolType,
13284
+ handles: {
13285
+ start: {},
13286
+ middle: {},
13287
+ end: {},
13288
+ textBox: {
13289
+ hasMoved: false,
13290
+ movesIndependently: false,
13291
+ drawnIndependently: true,
13292
+ allowedOutsideImage: true,
13293
+ hasBoundingBox: true
13294
+ }
13295
+ }
13296
+ });
13297
+
13298
+ var _SCOORDGroup$GraphicD = _slicedToArray(SCOORDGroup.GraphicData, 8);
13299
+
13300
+ state.handles.start.x = _SCOORDGroup$GraphicD[0];
13301
+ state.handles.start.y = _SCOORDGroup$GraphicD[1];
13302
+ state.handles.middle.x = _SCOORDGroup$GraphicD[2];
13303
+ state.handles.middle.y = _SCOORDGroup$GraphicD[3];
13304
+ state.handles.middle.x = _SCOORDGroup$GraphicD[4];
13305
+ state.handles.middle.y = _SCOORDGroup$GraphicD[5];
13306
+ state.handles.end.x = _SCOORDGroup$GraphicD[6];
13307
+ state.handles.end.y = _SCOORDGroup$GraphicD[7];
13308
+ return state;
13309
+ }
13310
+ }, {
13311
+ key: "getTID300RepresentationArguments",
13312
+ value: function getTID300RepresentationArguments(tool) {
13313
+ var handles = tool.handles,
13314
+ finding = tool.finding,
13315
+ findingSites = tool.findingSites;
13316
+ var point1 = handles.start;
13317
+ var point2 = handles.middle;
13318
+ var point3 = handles.middle;
13319
+ var point4 = handles.end;
13320
+ var rAngle = tool.rAngle;
13321
+ var trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:Angle";
13322
+ return {
13323
+ point1: point1,
13324
+ point2: point2,
13325
+ point3: point3,
13326
+ point4: point4,
13327
+ rAngle: rAngle,
13328
+ trackingIdentifierTextValue: trackingIdentifierTextValue,
13329
+ finding: finding,
13330
+ findingSites: findingSites || []
13331
+ };
13332
+ }
13333
+ }]);
13334
+
13335
+ return Angle;
13336
+ }();
13337
+
13338
+ Angle.toolType = ANGLE;
13339
+ Angle.utilityToolType = ANGLE;
13340
+ Angle.TID300Representation = CobbAngle;
13341
+
13342
+ Angle.isValidCornerstoneTrackingIdentifier = function (TrackingIdentifier) {
13343
+ if (!TrackingIdentifier.includes(":")) {
13344
+ return false;
13345
+ }
13346
+
13347
+ var _TrackingIdentifier$s = TrackingIdentifier.split(":"),
13348
+ _TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
13349
+ cornerstone4Tag = _TrackingIdentifier$s2[0],
13350
+ toolType = _TrackingIdentifier$s2[1];
13351
+
13352
+ if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
13353
+ return false;
13354
+ }
13355
+
13356
+ return toolType === ANGLE;
13357
+ };
13358
+
13359
+ MeasurementReport.registerTool(Angle);
13360
+
13361
+ var RectangleRoi =
13362
+ /*#__PURE__*/
13363
+ function () {
13364
+ function RectangleRoi() {
13365
+ _classCallCheck(this, RectangleRoi);
13366
+ }
13367
+
13368
+ _createClass(RectangleRoi, null, [{
13369
+ key: "getMeasurementData",
13370
+ value: function getMeasurementData(MeasurementGroup) {
13371
+ var _MeasurementReport$ge = MeasurementReport.getSetupMeasurementData(MeasurementGroup),
13372
+ defaultState = _MeasurementReport$ge.defaultState,
13373
+ SCOORDGroup = _MeasurementReport$ge.SCOORDGroup;
13374
+
13375
+ var state = _objectSpread2({}, defaultState, {
13376
+ toolType: RectangleRoi.toolType,
13377
+ handles: {
13378
+ start: {},
13379
+ end: {},
13380
+ textBox: {
13381
+ active: false,
13382
+ hasMoved: false,
13383
+ movesIndependently: false,
13384
+ drawnIndependently: true,
13385
+ allowedOutsideImage: true,
13386
+ hasBoundingBox: true
13387
+ },
13388
+ initialRotation: 0
13389
+ },
13390
+ color: undefined,
13391
+ invalidated: true
13392
+ });
13393
+
13394
+ var intermediate = {};
13395
+
13396
+ var _SCOORDGroup$GraphicD = _slicedToArray(SCOORDGroup.GraphicData, 6);
13397
+
13398
+ state.handles.start.x = _SCOORDGroup$GraphicD[0];
13399
+ state.handles.start.y = _SCOORDGroup$GraphicD[1];
13400
+ intermediate.x = _SCOORDGroup$GraphicD[2];
13401
+ intermediate.y = _SCOORDGroup$GraphicD[3];
13402
+ state.handles.end.x = _SCOORDGroup$GraphicD[4];
13403
+ state.handles.end.y = _SCOORDGroup$GraphicD[5];
13404
+ return state;
13405
+ }
13406
+ }, {
13407
+ key: "getTID300RepresentationArguments",
13408
+ value: function getTID300RepresentationArguments(tool) {
13409
+ var finding = tool.finding,
13410
+ findingSites = tool.findingSites,
13411
+ cachedStats = tool.cachedStats,
13412
+ handles = tool.handles;
13413
+ console.log("getTID300 Rectangle", tool, cachedStats, handles);
13414
+ var start = handles.start,
13415
+ end = handles.end;
13416
+ var points = [start, {
13417
+ x: start.x,
13418
+ y: end.y
13419
+ }, end, {
13420
+ x: end.x,
13421
+ y: start.y
13422
+ }];
13423
+ var area = cachedStats.area,
13424
+ perimeter = cachedStats.perimeter;
13425
+ console.log("Point=", points, "cachedStats=", cachedStats);
13426
+ var trackingIdentifierTextValue = "cornerstoneTools@^4.0.0:RectangleRoi";
13427
+ return {
13428
+ points: points,
13429
+ area: area,
13430
+ perimeter: perimeter,
13431
+ trackingIdentifierTextValue: trackingIdentifierTextValue,
13432
+ finding: finding,
13433
+ findingSites: findingSites || []
13434
+ };
13435
+ }
13436
+ }]);
13437
+
13438
+ return RectangleRoi;
13439
+ }();
13440
+
13441
+ RectangleRoi.toolType = "RectangleRoi";
13442
+ RectangleRoi.utilityToolType = "RectangleRoi";
13443
+ RectangleRoi.TID300Representation = Polyline;
13444
+
13445
+ RectangleRoi.isValidCornerstoneTrackingIdentifier = function (TrackingIdentifier) {
13446
+ if (!TrackingIdentifier.includes(":")) {
13447
+ return false;
13448
+ }
13449
+
13450
+ var _TrackingIdentifier$s = TrackingIdentifier.split(":"),
13451
+ _TrackingIdentifier$s2 = _slicedToArray(_TrackingIdentifier$s, 2),
13452
+ cornerstone4Tag = _TrackingIdentifier$s2[0],
13453
+ toolType = _TrackingIdentifier$s2[1];
13454
+
13455
+ if (cornerstone4Tag !== CORNERSTONE_4_TAG) {
13456
+ return false;
13457
+ }
13458
+
13459
+ return toolType === RectangleRoi.toolType;
13460
+ };
13461
+
13462
+ MeasurementReport.registerTool(RectangleRoi);
13463
+
12976
13464
  var Cornerstone = {
12977
13465
  Length: Length$1,
12978
- Freehand: Freehand,
13466
+ FreehandRoi: FreehandRoi,
12979
13467
  Bidirectional: Bidirectional$1,
12980
13468
  EllipticalRoi: EllipticalRoi,
12981
13469
  ArrowAnnotate: ArrowAnnotate,
12982
13470
  MeasurementReport: MeasurementReport,
12983
- Segmentation: Segmentation$3
13471
+ Segmentation: Segmentation$3,
13472
+ CobbAngle: CobbAngle$1,
13473
+ Angle: Angle,
13474
+ RectangleRoi: RectangleRoi
12984
13475
  };
12985
13476
 
12986
13477
  // Should we move it to Colors.js
@@ -13905,6 +14396,7 @@ var TID1500 = {
13905
14396
  var TID300 = {
13906
14397
  TID300Measurement: TID300Measurement,
13907
14398
  Length: Length,
14399
+ CobbAngle: CobbAngle,
13908
14400
  Bidirectional: Bidirectional,
13909
14401
  Polyline: Polyline,
13910
14402
  Ellipse: Ellipse
@@ -14158,7 +14650,8 @@ var message = {
14158
14650
  var utilities = {
14159
14651
  TID1500: TID1500,
14160
14652
  TID300: TID300,
14161
- message: message
14653
+ message: message,
14654
+ addAccessors: addAccessors
14162
14655
  };
14163
14656
 
14164
14657
  var Code =