dbgraph 0.1.0

package/dist/db/migrations.js

@@ -0,0 +1,39 @@
+"use strict";
+/**
+ * Database Migrations
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.CURRENT_SCHEMA_VERSION = void 0;
+exports.getCurrentVersion = getCurrentVersion;
+exports.runMigrations = runMigrations;
+exports.CURRENT_SCHEMA_VERSION = 1;
+const migrations = [
+// Version 1 is the initial schema, handled by schema.sql
+];
+function getCurrentVersion(db) {
+    try {
+        const row = db
+            .prepare('SELECT MAX(version) as version FROM schema_versions')
+            .get();
+        return row?.version ?? 0;
+    }
+    catch {
+        return 0;
+    }
+}
+function recordMigration(db, version, description) {
+    db.prepare('INSERT INTO schema_versions (version, applied_at, description) VALUES (?, ?, ?)').run(version, Date.now(), description);
+}
+function runMigrations(db, fromVersion) {
+    const pending = migrations.filter((m) => m.version > fromVersion);
+    if (pending.length === 0)
+        return;
+    pending.sort((a, b) => a.version - b.version);
+    for (const migration of pending) {
+        db.transaction(() => {
+            migration.up(db);
+            recordMigration(db, migration.version, migration.description);
+        })();
+    }
+}
+//# sourceMappingURL=migrations.js.map

package/dist/db/migrations.js.map

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package/dist/db/queries.d.ts

@@ -0,0 +1,46 @@
+/**
+ * Database Queries
+ *
+ * Prepared statements for CRUD operations on the database knowledge graph.
+ */
+import { SqliteDatabase } from './sqlite-adapter';
+import { Node, Edge, NodeKind, EdgeKind, DbSourceRecord, GraphStats, SearchOptions, SearchResult } from '../types';
+export declare class QueryBuilder {
+    private db;
+    private nodeCache;
+    private readonly maxCacheSize;
+    private stmts;
+    constructor(db: SqliteDatabase);
+    insertNode(node: Node): void;
+    insertNodes(nodes: Node[]): void;
+    deleteNodesBySource(source: string): void;
+    getNodeById(id: string): Node | null;
+    getNodesByIds(ids: readonly string[]): Map<string, Node>;
+    private cacheNode;
+    clearCache(): void;
+    getNodesByKind(kind: NodeKind): Node[];
+    getNodesByName(name: string): Node[];
+    getNodesByQualifiedName(qualifiedName: string): Node[];
+    searchNodes(query: string, options?: SearchOptions): SearchResult[];
+    private searchNodesLike;
+    insertEdge(edge: Edge): void;
+    insertEdges(edges: Edge[]): void;
+    deleteEdgesBySource(sourceId: string): void;
+    deleteEdgesByTarget(targetId: string): void;
+    getOutgoingEdges(sourceId: string, kinds?: EdgeKind[]): Edge[];
+    getIncomingEdges(targetId: string, kinds?: EdgeKind[]): Edge[];
+    findEdgesBetweenNodes(nodeIds: string[], kinds?: EdgeKind[]): Edge[];
+    upsertDbSource(source: DbSourceRecord): void;
+    getDbSource(alias: string): DbSourceRecord | null;
+    getAllDbSources(): DbSourceRecord[];
+    deleteDbSource(alias: string): void;
+    getNodeAndEdgeCount(): {
+        nodes: number;
+        edges: number;
+    };
+    getStats(): GraphStats;
+    clear(): void;
+    getMetadata(key: string): string | null;
+    setMetadata(key: string, value: string): void;
+}
+//# sourceMappingURL=queries.d.ts.map

package/dist/db/queries.d.ts.map

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package/dist/db/queries.js

@@ -0,0 +1,436 @@
+"use strict";
+/**
+ * Database Queries
+ *
+ * Prepared statements for CRUD operations on the database knowledge graph.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.QueryBuilder = void 0;
+const utils_1 = require("../utils");
+// =============================================================================
+// Row converters
+// =============================================================================
+function rowToNode(row) {
+    return {
+        id: row.id,
+        kind: row.kind,
+        name: row.name,
+        qualifiedName: row.qualified_name,
+        filePath: row.file_path,
+        language: row.language,
+        startLine: row.start_line,
+        endLine: row.end_line,
+        docstring: row.docstring ?? undefined,
+        signature: row.signature ?? undefined,
+        metadata: row.metadata ? (0, utils_1.safeJsonParse)(row.metadata, undefined) : undefined,
+        updatedAt: row.updated_at,
+    };
+}
+function rowToEdge(row) {
+    return {
+        source: row.source,
+        target: row.target,
+        kind: row.kind,
+        metadata: row.metadata ? (0, utils_1.safeJsonParse)(row.metadata, undefined) : undefined,
+        provenance: row.provenance,
+    };
+}
+function rowToDbSource(row) {
+    return {
+        alias: row.alias,
+        engine: row.engine,
+        database: row.database,
+        host: row.host ?? undefined,
+        port: row.port ?? undefined,
+        displayUri: row.display_uri,
+        indexedAt: row.indexed_at,
+        nodeCount: row.node_count,
+        errors: row.errors ? (0, utils_1.safeJsonParse)(row.errors, undefined) : undefined,
+    };
+}
+// =============================================================================
+// QueryBuilder
+// =============================================================================
+class QueryBuilder {
+    db;
+    nodeCache = new Map();
+    maxCacheSize = 1000;
+    stmts = {};
+    constructor(db) {
+        this.db = db;
+    }
+    // ===========================================================================
+    // Node Operations
+    // ===========================================================================
+    insertNode(node) {
+        if (!this.stmts.insertNode) {
+            this.stmts.insertNode = this.db.prepare(`
+        INSERT OR REPLACE INTO nodes (
+          id, kind, name, qualified_name, file_path, language,
+          start_line, end_line, docstring, signature, metadata, updated_at
+        ) VALUES (
+          @id, @kind, @name, @qualifiedName, @filePath, @language,
+          @startLine, @endLine, @docstring, @signature, @metadata, @updatedAt
+        )
+      `);
+        }
+        if (!node.id || !node.kind || !node.name || !node.filePath)
+            return;
+        this.nodeCache.delete(node.id);
+        this.stmts.insertNode.run({
+            id: node.id,
+            kind: node.kind,
+            name: node.name,
+            qualifiedName: node.qualifiedName ?? node.name,
+            filePath: node.filePath,
+            language: node.language ?? 'unknown',
+            startLine: node.startLine ?? 0,
+            endLine: node.endLine ?? 0,
+            docstring: node.docstring ?? null,
+            signature: node.signature ?? null,
+            metadata: node.metadata ? JSON.stringify(node.metadata) : null,
+            updatedAt: node.updatedAt ?? Date.now(),
+        });
+    }
+    insertNodes(nodes) {
+        for (const node of nodes)
+            this.insertNode(node);
+    }
+    deleteNodesBySource(source) {
+        if (!this.stmts.deleteNodesBySource) {
+            this.stmts.deleteNodesBySource = this.db.prepare('DELETE FROM nodes WHERE file_path LIKE ?');
+        }
+        // Invalidate cache for nodes matching this source
+        for (const [id, node] of this.nodeCache) {
+            if (node.filePath.startsWith(source))
+                this.nodeCache.delete(id);
+        }
+        this.stmts.deleteNodesBySource.run(`${source}%`);
+    }
+    getNodeById(id) {
+        if (this.nodeCache.has(id)) {
+            const cached = this.nodeCache.get(id);
+            this.nodeCache.delete(id);
+            this.nodeCache.set(id, cached);
+            return cached;
+        }
+        if (!this.stmts.getNodeById) {
+            this.stmts.getNodeById = this.db.prepare('SELECT * FROM nodes WHERE id = ?');
+        }
+        const row = this.stmts.getNodeById.get(id);
+        if (!row)
+            return null;
+        const node = rowToNode(row);
+        this.cacheNode(node);
+        return node;
+    }
+    getNodesByIds(ids) {
+        const out = new Map();
+        if (ids.length === 0)
+            return out;
+        const misses = [];
+        for (const id of ids) {
+            const cached = this.nodeCache.get(id);
+            if (cached !== undefined) {
+                this.nodeCache.delete(id);
+                this.nodeCache.set(id, cached);
+                out.set(id, cached);
+            }
+            else {
+                misses.push(id);
+            }
+        }
+        if (misses.length === 0)
+            return out;
+        const CHUNK = 500;
+        for (let i = 0; i < misses.length; i += CHUNK) {
+            const chunk = misses.slice(i, i + CHUNK);
+            const placeholders = chunk.map(() => '?').join(',');
+            const rows = this.db
+                .prepare(`SELECT * FROM nodes WHERE id IN (${placeholders})`)
+                .all(...chunk);
+            for (const row of rows) {
+                const node = rowToNode(row);
+                out.set(node.id, node);
+                this.cacheNode(node);
+            }
+        }
+        return out;
+    }
+    cacheNode(node) {
+        if (this.nodeCache.size >= this.maxCacheSize) {
+            const firstKey = this.nodeCache.keys().next().value;
+            if (firstKey)
+                this.nodeCache.delete(firstKey);
+        }
+        this.nodeCache.set(node.id, node);
+    }
+    clearCache() { this.nodeCache.clear(); }
+    getNodesByKind(kind) {
+        if (!this.stmts.getNodesByKind) {
+            this.stmts.getNodesByKind = this.db.prepare('SELECT * FROM nodes WHERE kind = ?');
+        }
+        return this.stmts.getNodesByKind.all(kind).map(rowToNode);
+    }
+    getNodesByName(name) {
+        if (!this.stmts.getNodesByName) {
+            this.stmts.getNodesByName = this.db.prepare('SELECT * FROM nodes WHERE name = ?');
+        }
+        return this.stmts.getNodesByName.all(name).map(rowToNode);
+    }
+    getNodesByQualifiedName(qualifiedName) {
+        if (!this.stmts.getNodesByQualifiedName) {
+            this.stmts.getNodesByQualifiedName = this.db.prepare('SELECT * FROM nodes WHERE qualified_name = ?');
+        }
+        return this.stmts.getNodesByQualifiedName.all(qualifiedName).map(rowToNode);
+    }
+    searchNodes(query, options = {}) {
+        const { kinds, source, limit = 100, offset = 0 } = options;
+        // FTS5 prefix search
+        const ftsQuery = query
+            .replace(/['"*():^]/g, '')
+            .split(/\s+/)
+            .filter(t => t.length > 0)
+            .filter(t => !/^(AND|OR|NOT|NEAR)$/i.test(t))
+            .map(t => `"${t}"*`)
+            .join(' OR ');
+        if (!ftsQuery)
+            return [];
+        const ftsLimit = Math.max(limit * 5, 100);
+        let sql = `
+      SELECT nodes.*, bm25(nodes_fts, 0, 20, 5, 1) as score
+      FROM nodes_fts
+      JOIN nodes ON nodes_fts.id = nodes.id
+      WHERE nodes_fts MATCH ?
+    `;
+        const params = [ftsQuery];
+        if (kinds && kinds.length > 0) {
+            sql += ` AND nodes.kind IN (${kinds.map(() => '?').join(',')})`;
+            params.push(...kinds);
+        }
+        if (source) {
+            sql += ` AND nodes.file_path LIKE ?`;
+            params.push(`${source}%`);
+        }
+        sql += ' ORDER BY score LIMIT ? OFFSET ?';
+        params.push(ftsLimit, offset);
+        try {
+            const rows = this.db.prepare(sql).all(...params);
+            return rows.map(row => ({ node: rowToNode(row), score: Math.abs(row.score) }));
+        }
+        catch {
+            // FTS query failed — try LIKE fallback
+            return this.searchNodesLike(query, options);
+        }
+    }
+    searchNodesLike(query, options) {
+        const { kinds, source, limit = 100 } = options;
+        // Escape LIKE wildcards so `user_id` doesn't match `userXid`
+        const esc = (s) => s.replace(/[%_]/g, '\\$&');
+        const escaped = esc(query);
+        const likeEsc = ` LIKE ? ESCAPE '\\'`;
+        let sql = `
+      SELECT nodes.*,
+        CASE
+          WHEN name = ? THEN 1.0
+          WHEN name${likeEsc} THEN 0.9
+          WHEN name${likeEsc} THEN 0.8
+          WHEN qualified_name${likeEsc} THEN 0.7
+          ELSE 0.5
+        END as score
+      FROM nodes
+      WHERE (name${likeEsc} OR qualified_name${likeEsc} OR name${likeEsc})
+    `;
+        const pPrefix = `${escaped}%`;
+        const pContain = `%${escaped}%`;
+        const params = [
+            query, pPrefix, pContain, pContain,
+            pContain, pContain, pPrefix,
+        ];
+        if (kinds && kinds.length > 0) {
+            sql += ` AND kind IN (${kinds.map(() => '?').join(',')})`;
+            params.push(...kinds);
+        }
+        if (source) {
+            sql += ' AND file_path LIKE ?';
+            params.push(`${source}%`);
+        }
+        sql += ' ORDER BY score DESC, length(name) ASC LIMIT ?';
+        params.push(limit);
+        return this.db.prepare(sql).all(...params)
+            .map(row => ({ node: rowToNode(row), score: row.score }));
+    }
+    // ===========================================================================
+    // Edge Operations
+    // ===========================================================================
+    insertEdge(edge) {
+        if (!this.stmts.insertEdge) {
+            this.stmts.insertEdge = this.db.prepare(`
+        INSERT OR IGNORE INTO edges (source, target, kind, metadata, provenance)
+        VALUES (@source, @target, @kind, @metadata, @provenance)
+      `);
+        }
+        this.stmts.insertEdge.run({
+            source: edge.source,
+            target: edge.target,
+            kind: edge.kind,
+            metadata: edge.metadata ? JSON.stringify(edge.metadata) : null,
+            provenance: edge.provenance ?? null,
+        });
+    }
+    insertEdges(edges) {
+        if (edges.length === 0)
+            return;
+        for (const edge of edges)
+            this.insertEdge(edge);
+    }
+    deleteEdgesBySource(sourceId) {
+        if (!this.stmts.deleteEdgesBySource) {
+            this.stmts.deleteEdgesBySource = this.db.prepare('DELETE FROM edges WHERE source = ?');
+        }
+        this.stmts.deleteEdgesBySource.run(sourceId);
+    }
+    deleteEdgesByTarget(targetId) {
+        if (!this.stmts.deleteEdgesByTarget) {
+            this.stmts.deleteEdgesByTarget = this.db.prepare('DELETE FROM edges WHERE target = ?');
+        }
+        this.stmts.deleteEdgesByTarget.run(targetId);
+    }
+    getOutgoingEdges(sourceId, kinds) {
+        if (kinds && kinds.length > 0) {
+            const sql = `SELECT * FROM edges WHERE source = ? AND kind IN (${kinds.map(() => '?').join(',')})`;
+            return this.db.prepare(sql).all(sourceId, ...kinds).map(rowToEdge);
+        }
+        if (!this.stmts.getEdgesBySource) {
+            this.stmts.getEdgesBySource = this.db.prepare('SELECT * FROM edges WHERE source = ?');
+        }
+        return this.stmts.getEdgesBySource.all(sourceId).map(rowToEdge);
+    }
+    getIncomingEdges(targetId, kinds) {
+        if (kinds && kinds.length > 0) {
+            const sql = `SELECT * FROM edges WHERE target = ? AND kind IN (${kinds.map(() => '?').join(',')})`;
+            return this.db.prepare(sql).all(targetId, ...kinds).map(rowToEdge);
+        }
+        if (!this.stmts.getEdgesByTarget) {
+            this.stmts.getEdgesByTarget = this.db.prepare('SELECT * FROM edges WHERE target = ?');
+        }
+        return this.stmts.getEdgesByTarget.all(targetId).map(rowToEdge);
+    }
+    findEdgesBetweenNodes(nodeIds, kinds) {
+        if (nodeIds.length === 0)
+            return [];
+        const idsJson = JSON.stringify(nodeIds);
+        let sql = `SELECT * FROM edges WHERE source IN (SELECT value FROM json_each(?)) AND target IN (SELECT value FROM json_each(?))`;
+        const params = [idsJson, idsJson];
+        if (kinds && kinds.length > 0) {
+            sql += ` AND kind IN (${kinds.map(() => '?').join(',')})`;
+            params.push(...kinds);
+        }
+        return this.db.prepare(sql).all(...params).map(rowToEdge);
+    }
+    // ===========================================================================
+    // DB Source Operations
+    // ===========================================================================
+    upsertDbSource(source) {
+        if (!this.stmts.upsertDbSource) {
+            this.stmts.upsertDbSource = this.db.prepare(`
+        INSERT INTO db_sources (alias, engine, database, host, port, display_uri, indexed_at, node_count, errors)
+        VALUES (@alias, @engine, @database, @host, @port, @displayUri, @indexedAt, @nodeCount, @errors)
+        ON CONFLICT(alias) DO UPDATE SET
+          engine = @engine, database = @database, host = @host, port = @port,
+          display_uri = @displayUri, indexed_at = @indexedAt, node_count = @nodeCount, errors = @errors
+      `);
+        }
+        this.stmts.upsertDbSource.run({
+            alias: source.alias,
+            engine: source.engine,
+            database: source.database,
+            host: source.host ?? null,
+            port: source.port ?? null,
+            displayUri: source.displayUri,
+            indexedAt: source.indexedAt,
+            nodeCount: source.nodeCount,
+            errors: source.errors ? JSON.stringify(source.errors) : null,
+        });
+    }
+    getDbSource(alias) {
+        if (!this.stmts.getDbSource) {
+            this.stmts.getDbSource = this.db.prepare('SELECT * FROM db_sources WHERE alias = ?');
+        }
+        const row = this.stmts.getDbSource.get(alias);
+        return row ? rowToDbSource(row) : null;
+    }
+    getAllDbSources() {
+        if (!this.stmts.getAllDbSources) {
+            this.stmts.getAllDbSources = this.db.prepare('SELECT * FROM db_sources ORDER BY alias');
+        }
+        return this.stmts.getAllDbSources.all().map(rowToDbSource);
+    }
+    deleteDbSource(alias) {
+        if (!this.stmts.deleteDbSource) {
+            this.stmts.deleteDbSource = this.db.prepare('DELETE FROM db_sources WHERE alias = ?');
+        }
+        this.stmts.deleteDbSource.run(alias);
+    }
+    // ===========================================================================
+    // Statistics
+    // ===========================================================================
+    getNodeAndEdgeCount() {
+        return this.db
+            .prepare('SELECT (SELECT COUNT(*) FROM nodes) AS nodes, (SELECT COUNT(*) FROM edges) AS edges')
+            .get();
+    }
+    getStats() {
+        const counts = this.db.prepare(`
+      SELECT
+        (SELECT COUNT(*) FROM nodes) AS node_count,
+        (SELECT COUNT(*) FROM edges) AS edge_count,
+        (SELECT COUNT(*) FROM db_sources) AS db_count
+    `).get();
+        const nodesByKind = {};
+        const nodeKindRows = this.db
+            .prepare('SELECT kind, COUNT(*) as count FROM nodes GROUP BY kind')
+            .all();
+        for (const row of nodeKindRows)
+            nodesByKind[row.kind] = row.count;
+        const edgesByKind = {};
+        const edgeKindRows = this.db
+            .prepare('SELECT kind, COUNT(*) as count FROM edges GROUP BY kind')
+            .all();
+        for (const row of edgeKindRows)
+            edgesByKind[row.kind] = row.count;
+        const lastIndexed = this.db
+            .prepare('SELECT MAX(indexed_at) AS ts FROM db_sources')
+            .get();
+        return {
+            nodeCount: counts.node_count,
+            edgeCount: counts.edge_count,
+            dbCount: counts.db_count ?? 0,
+            nodesByKind,
+            edgesByKind,
+            dbSizeBytes: 0,
+            lastUpdated: lastIndexed?.ts ?? 0,
+        };
+    }
+    clear() {
+        this.db.transaction(() => {
+            this.db.exec('DELETE FROM edges');
+            this.db.exec('DELETE FROM nodes');
+            this.db.exec('DELETE FROM db_sources');
+        })();
+        this.nodeCache.clear();
+    }
+    getMetadata(key) {
+        const row = this.db.prepare('SELECT value FROM project_metadata WHERE key = ?').get(key);
+        return row?.value ?? null;
+    }
+    setMetadata(key, value) {
+        this.db.prepare(`
+      INSERT INTO project_metadata (key, value, updated_at)
+      VALUES (?, ?, ?)
+      ON CONFLICT(key) DO UPDATE SET value = excluded.value, updated_at = excluded.updated_at
+    `).run(key, value, Date.now());
+    }
+}
+exports.QueryBuilder = QueryBuilder;
+//# sourceMappingURL=queries.js.map

package/dist/db/queries.js.map

@@ -0,0 +1 @@
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package/dist/db/schema.sql

@@ -0,0 +1,113 @@
+-- DBGraph SQLite Schema
+-- Version 1
+
+-- Schema version tracking
+CREATE TABLE IF NOT EXISTS schema_versions (
+    version INTEGER PRIMARY KEY,
+    applied_at INTEGER NOT NULL,
+    description TEXT
+);
+
+INSERT INTO schema_versions (version, applied_at, description)
+VALUES (1, strftime('%s', 'now') * 1000, 'Initial schema');
+
+-- =============================================================================
+-- Core Tables
+-- =============================================================================
+
+-- Nodes: Database schema objects (tables, columns, indexes, etc.)
+CREATE TABLE IF NOT EXISTS nodes (
+    id TEXT PRIMARY KEY,
+    kind TEXT NOT NULL,
+    name TEXT NOT NULL,
+    qualified_name TEXT NOT NULL,
+    file_path TEXT NOT NULL,
+    language TEXT NOT NULL,
+    start_line INTEGER NOT NULL DEFAULT 0,
+    end_line INTEGER NOT NULL DEFAULT 0,
+    docstring TEXT,
+    signature TEXT,
+    metadata TEXT,       -- JSON object for type info, constraints, etc.
+    updated_at INTEGER NOT NULL
+);
+
+-- Edges: Relationships between schema objects
+CREATE TABLE IF NOT EXISTS edges (
+    id INTEGER PRIMARY KEY AUTOINCREMENT,
+    source TEXT NOT NULL,
+    target TEXT NOT NULL,
+    kind TEXT NOT NULL,
+    metadata TEXT,       -- JSON object
+    provenance TEXT DEFAULT NULL,
+    FOREIGN KEY (source) REFERENCES nodes(id) ON DELETE CASCADE,
+    FOREIGN KEY (target) REFERENCES nodes(id) ON DELETE CASCADE
+);
+
+-- Database sources: Tracked database connections
+CREATE TABLE IF NOT EXISTS db_sources (
+    alias TEXT PRIMARY KEY,
+    engine TEXT NOT NULL,
+    database TEXT NOT NULL,
+    host TEXT,
+    port INTEGER,
+    display_uri TEXT NOT NULL,
+    indexed_at INTEGER NOT NULL,
+    node_count INTEGER DEFAULT 0,
+    errors TEXT          -- JSON array
+);
+
+-- =============================================================================
+-- Indexes
+-- =============================================================================
+
+CREATE INDEX IF NOT EXISTS idx_nodes_kind ON nodes(kind);
+CREATE INDEX IF NOT EXISTS idx_nodes_name ON nodes(name);
+CREATE INDEX IF NOT EXISTS idx_nodes_qualified_name ON nodes(qualified_name);
+CREATE INDEX IF NOT EXISTS idx_nodes_file_path ON nodes(file_path);
+CREATE INDEX IF NOT EXISTS idx_nodes_language ON nodes(language);
+
+-- Full-text search index
+CREATE VIRTUAL TABLE IF NOT EXISTS nodes_fts USING fts5(
+    id,
+    name,
+    qualified_name,
+    docstring,
+    signature,
+    content='nodes',
+    content_rowid='rowid'
+);
+
+-- Triggers to keep FTS index in sync
+CREATE TRIGGER IF NOT EXISTS nodes_ai AFTER INSERT ON nodes BEGIN
+    INSERT INTO nodes_fts(rowid, id, name, qualified_name, docstring, signature)
+    VALUES (NEW.rowid, NEW.id, NEW.name, NEW.qualified_name, NEW.docstring, NEW.signature);
+END;
+
+CREATE TRIGGER IF NOT EXISTS nodes_ad AFTER DELETE ON nodes BEGIN
+    INSERT INTO nodes_fts(nodes_fts, rowid, id, name, qualified_name, docstring, signature)
+    VALUES ('delete', OLD.rowid, OLD.id, OLD.name, OLD.qualified_name, OLD.docstring, OLD.signature);
+END;
+
+CREATE TRIGGER IF NOT EXISTS nodes_au AFTER UPDATE ON nodes BEGIN
+    INSERT INTO nodes_fts(nodes_fts, rowid, id, name, qualified_name, docstring, signature)
+    VALUES ('delete', OLD.rowid, OLD.id, OLD.name, OLD.qualified_name, OLD.docstring, OLD.signature);
+    INSERT INTO nodes_fts(rowid, id, name, qualified_name, docstring, signature)
+    VALUES (NEW.rowid, NEW.id, NEW.name, NEW.qualified_name, NEW.docstring, NEW.signature);
+END;
+
+-- Edge indexes
+CREATE INDEX IF NOT EXISTS idx_edges_kind ON edges(kind);
+CREATE INDEX IF NOT EXISTS idx_edges_source_kind ON edges(source, kind);
+CREATE INDEX IF NOT EXISTS idx_edges_target_kind ON edges(target, kind);
+CREATE INDEX IF NOT EXISTS idx_edges_provenance ON edges(provenance);
+
+-- DB sources index
+CREATE INDEX IF NOT EXISTS idx_db_sources_engine ON db_sources(engine);
+CREATE INDEX IF NOT EXISTS idx_db_sources_indexed_at ON db_sources(indexed_at);
+
+-- Project metadata
+CREATE TABLE IF NOT EXISTS project_metadata (
+    key TEXT PRIMARY KEY,
+    value TEXT NOT NULL,
+    updated_at INTEGER NOT NULL
+);