db-mcp 1.0.1

package/dist/adapters/sqlite/tools/vector.js

@@ -0,0 +1,613 @@
+/**
+ * SQLite Vector Search Tools
+ *
+ * Vector similarity search and embedding operations.
+ * Uses JSON arrays for vector storage (no external extensions needed).
+ * 11 tools total.
+ */
+import { z } from "zod";
+import { readOnly, write, idempotent, destructive, } from "../../../utils/annotations.js";
+import { validateWhereClause, sanitizeIdentifier, } from "../../../utils/index.js";
+import { CreateTableOutputSchema, VectorStoreOutputSchema, VectorBatchStoreOutputSchema, VectorGetOutputSchema, VectorSearchOutputSchema, VectorDeleteOutputSchema, VectorCountOutputSchema, VectorStatsOutputSchema, VectorDimensionsOutputSchema, VectorNormalizeOutputSchema, VectorDistanceOutputSchema, } from "../output-schemas.js";
+// Vector schemas
+const VectorStoreSchema = z.object({
+    table: z.string().describe("Table name"),
+    idColumn: z.string().describe("ID column name"),
+    vectorColumn: z.string().describe("Column to store vector (as JSON)"),
+    id: z.union([z.string(), z.number()]).describe("Row identifier"),
+    vector: z.array(z.number()).describe("Vector as array of numbers"),
+});
+const VectorSearchSchema = z.object({
+    table: z.string().describe("Table name"),
+    vectorColumn: z.string().describe("Vector column name"),
+    queryVector: z.array(z.number()).describe("Query vector"),
+    metric: z.enum(["cosine", "euclidean", "dot"]).optional().default("cosine"),
+    limit: z.number().optional().default(10),
+    whereClause: z.string().optional(),
+    returnColumns: z.array(z.string()).optional().describe("Columns to return"),
+});
+const VectorCreateTableSchema = z.object({
+    tableName: z.string().describe("Table name"),
+    dimensions: z.number().describe("Vector dimensions"),
+    additionalColumns: z
+        .array(z.object({
+        name: z.string(),
+        type: z.string(),
+    }))
+        .optional(),
+});
+const VectorNormalizeSchema = z.object({
+    vector: z.array(z.number()).describe("Vector to normalize"),
+});
+const VectorDistanceSchema = z.object({
+    vector1: z.array(z.number()).describe("First vector"),
+    vector2: z.array(z.number()).describe("Second vector"),
+    metric: z.enum(["cosine", "euclidean", "dot"]).optional().default("cosine"),
+});
+const VectorBatchStoreSchema = z.object({
+    table: z.string().describe("Table name"),
+    idColumn: z.string().describe("ID column name"),
+    vectorColumn: z.string().describe("Vector column name"),
+    items: z
+        .array(z.object({
+        id: z.union([z.string(), z.number()]),
+        vector: z.array(z.number()),
+    }))
+        .describe("Items to store"),
+});
+const VectorDeleteSchema = z.object({
+    table: z.string().describe("Table name"),
+    idColumn: z.string().describe("ID column name"),
+    ids: z.array(z.union([z.string(), z.number()])).describe("IDs to delete"),
+});
+const VectorGetSchema = z.object({
+    table: z.string().describe("Table name"),
+    idColumn: z.string().describe("ID column name"),
+    vectorColumn: z.string().describe("Vector column name"),
+    id: z.union([z.string(), z.number()]).describe("Row identifier"),
+});
+const VectorCountSchema = z.object({
+    table: z.string().describe("Table name"),
+    dimensions: z.number().optional().describe("Filter by dimension count"),
+});
+const VectorStatsSchema = z.object({
+    table: z.string().describe("Table name"),
+    vectorColumn: z.string().describe("Vector column name"),
+    sampleSize: z.number().optional().default(100),
+});
+const VectorDimensionsSchema = z.object({
+    table: z.string().describe("Table name"),
+    vectorColumn: z.string().describe("Vector column name"),
+});
+/**
+ * Get all vector tools
+ */
+export function getVectorTools(adapter) {
+    return [
+        createVectorCreateTableTool(adapter),
+        createVectorStoreTool(adapter),
+        createVectorBatchStoreTool(adapter),
+        createVectorSearchTool(adapter),
+        createVectorGetTool(adapter),
+        createVectorDeleteTool(adapter),
+        createVectorCountTool(adapter),
+        createVectorStatsTool(adapter),
+        createVectorDimensionsTool(adapter),
+        createVectorNormalizeTool(),
+        createVectorDistanceTool(),
+    ];
+}
+// Helper functions for vector operations
+function cosineSimilarity(a, b) {
+    if (a.length !== b.length)
+        throw new Error("Vector dimensions must match");
+    let dotProd = 0;
+    let normA = 0;
+    let normB = 0;
+    for (let i = 0; i < a.length; i++) {
+        const aVal = a[i] ?? 0;
+        const bVal = b[i] ?? 0;
+        dotProd += aVal * bVal;
+        normA += aVal * aVal;
+        normB += bVal * bVal;
+    }
+    const magnitude = Math.sqrt(normA) * Math.sqrt(normB);
+    return magnitude === 0 ? 0 : dotProd / magnitude;
+}
+function euclideanDistance(a, b) {
+    if (a.length !== b.length)
+        throw new Error("Vector dimensions must match");
+    let sum = 0;
+    for (let i = 0; i < a.length; i++) {
+        const aVal = a[i] ?? 0;
+        const bVal = b[i] ?? 0;
+        const diff = aVal - bVal;
+        sum += diff * diff;
+    }
+    return Math.sqrt(sum);
+}
+function dotProduct(a, b) {
+    if (a.length !== b.length)
+        throw new Error("Vector dimensions must match");
+    let sum = 0;
+    for (let i = 0; i < a.length; i++) {
+        sum += (a[i] ?? 0) * (b[i] ?? 0);
+    }
+    return sum;
+}
+function normalizeVector(v) {
+    const norm = Math.sqrt(v.reduce((sum, x) => sum + x * x, 0));
+    if (norm === 0)
+        return v;
+    return v.map((x) => x / norm);
+}
+function parseVector(value) {
+    if (Array.isArray(value)) {
+        return value.map(Number);
+    }
+    if (typeof value === "string") {
+        try {
+            const parsed = JSON.parse(value);
+            if (Array.isArray(parsed)) {
+                return parsed.map(Number);
+            }
+        }
+        catch {
+            // Not valid JSON
+        }
+    }
+    throw new Error("Invalid vector format");
+}
+/**
+ * Create a table for vector storage
+ */
+function createVectorCreateTableTool(adapter) {
+    return {
+        name: "sqlite_vector_create_table",
+        description: "Create a table optimized for vector storage with JSON vector column.",
+        group: "vector",
+        inputSchema: VectorCreateTableSchema,
+        outputSchema: CreateTableOutputSchema,
+        requiredScopes: ["write"],
+        annotations: idempotent("Create Vector Table"),
+        handler: async (params, _context) => {
+            const input = VectorCreateTableSchema.parse(params);
+            // Validate and quote table name
+            const tableName = sanitizeIdentifier(input.tableName);
+            const columns = [
+                "id INTEGER PRIMARY KEY",
+                "vector TEXT NOT NULL", // JSON array
+                `dimensions INTEGER DEFAULT ${input.dimensions}`,
+            ];
+            if (input.additionalColumns) {
+                for (const col of input.additionalColumns) {
+                    const colName = sanitizeIdentifier(col.name);
+                    columns.push(`${colName} ${col.type}`);
+                }
+            }
+            const sql = `CREATE TABLE IF NOT EXISTS ${tableName} (${columns.join(", ")})`;
+            await adapter.executeQuery(sql);
+            return {
+                success: true,
+                message: `Vector table '${input.tableName}' created with ${input.dimensions} dimensions`,
+                sql,
+            };
+        },
+    };
+}
+/**
+ * Store a vector
+ */
+function createVectorStoreTool(adapter) {
+    return {
+        name: "sqlite_vector_store",
+        description: "Store or update a vector in the database.",
+        group: "vector",
+        inputSchema: VectorStoreSchema,
+        outputSchema: VectorStoreOutputSchema,
+        requiredScopes: ["write"],
+        annotations: write("Store Vector"),
+        handler: async (params, _context) => {
+            const input = VectorStoreSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const idColumn = sanitizeIdentifier(input.idColumn);
+            const vectorColumn = sanitizeIdentifier(input.vectorColumn);
+            const vectorJson = JSON.stringify(input.vector);
+            const idValue = typeof input.id === "string" ? `'${input.id}'` : input.id;
+            // Try update first, then insert
+            const updateSql = `UPDATE ${table} SET ${vectorColumn} = '${vectorJson}' WHERE ${idColumn} = ${idValue}`;
+            const updateResult = await adapter.executeWriteQuery(updateSql);
+            if (updateResult.rowsAffected === 0) {
+                const insertSql = `INSERT INTO ${table} (${idColumn}, ${vectorColumn}) VALUES (${idValue}, '${vectorJson}')`;
+                await adapter.executeWriteQuery(insertSql);
+            }
+            return {
+                success: true,
+                id: input.id,
+                dimensions: input.vector.length,
+            };
+        },
+    };
+}
+/**
+ * Batch store vectors
+ */
+function createVectorBatchStoreTool(adapter) {
+    return {
+        name: "sqlite_vector_batch_store",
+        description: "Store multiple vectors in a batch operation.",
+        group: "vector",
+        inputSchema: VectorBatchStoreSchema,
+        outputSchema: VectorBatchStoreOutputSchema,
+        requiredScopes: ["write"],
+        annotations: write("Batch Store Vectors"),
+        handler: async (params, _context) => {
+            const input = VectorBatchStoreSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const idColumn = sanitizeIdentifier(input.idColumn);
+            const vectorColumn = sanitizeIdentifier(input.vectorColumn);
+            let stored = 0;
+            for (const item of input.items) {
+                const vectorJson = JSON.stringify(item.vector);
+                const idValue = typeof item.id === "string" ? `'${item.id}'` : item.id;
+                const sql = `INSERT OR REPLACE INTO ${table} (${idColumn}, ${vectorColumn}) VALUES (${idValue}, '${vectorJson}')`;
+                await adapter.executeWriteQuery(sql);
+                stored++;
+            }
+            return {
+                success: true,
+                stored,
+                dimensions: input.items[0]?.vector.length,
+            };
+        },
+    };
+}
+/**
+ * Vector similarity search
+ */
+function createVectorSearchTool(adapter) {
+    return {
+        name: "sqlite_vector_search",
+        description: "Find similar vectors using cosine, euclidean, or dot product similarity.",
+        group: "vector",
+        inputSchema: VectorSearchSchema,
+        outputSchema: VectorSearchOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Vector Search"),
+        handler: async (params, _context) => {
+            const input = VectorSearchSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const vectorColumn = sanitizeIdentifier(input.vectorColumn);
+            // Build select clause
+            // Determine if vector column should be included in final results
+            const includeVectorInResults = !input.returnColumns ||
+                input.returnColumns.length === 0 ||
+                input.returnColumns.includes(input.vectorColumn);
+            let selectCols = "*";
+            if (input.returnColumns && input.returnColumns.length > 0) {
+                const quotedCols = input.returnColumns.map((c) => sanitizeIdentifier(c));
+                selectCols = quotedCols.join(", ");
+            }
+            // Always fetch vector column for similarity calculation, but may remove from results
+            let sql = `SELECT ${selectCols}, ${vectorColumn} FROM ${table}`;
+            if (input.whereClause) {
+                validateWhereClause(input.whereClause);
+                sql += ` WHERE ${input.whereClause}`;
+            }
+            const result = await adapter.executeReadQuery(sql);
+            // Calculate similarities in JavaScript
+            const queryVector = input.queryVector;
+            const scored = (result.rows ?? [])
+                .map((row) => {
+                try {
+                    const storedVector = parseVector(row[input.vectorColumn]);
+                    let score;
+                    switch (input.metric) {
+                        case "euclidean":
+                            // Invert so lower distance = higher score
+                            score = 1 / (1 + euclideanDistance(queryVector, storedVector));
+                            break;
+                        case "dot":
+                            score = dotProduct(queryVector, storedVector);
+                            break;
+                        case "cosine":
+                        default:
+                            score = cosineSimilarity(queryVector, storedVector);
+                    }
+                    return { ...row, _similarity: Math.round(score * 10000) / 10000 };
+                }
+                catch {
+                    return { ...row, _similarity: -1 };
+                }
+            })
+                .filter((r) => r._similarity >= 0);
+            // Sort by similarity (descending) and limit
+            scored.sort((a, b) => b._similarity - a._similarity);
+            const limited = scored.slice(0, input.limit);
+            // Apply returnColumns filtering (payload optimization)
+            // If returnColumns specified, only include those columns plus _similarity
+            const results = limited.map((row) => {
+                // Cast row for proper indexing since it's a spread of result row + _similarity
+                const rowData = row;
+                if (input.returnColumns && input.returnColumns.length > 0) {
+                    // Build filtered result with only requested columns
+                    const filtered = {};
+                    for (const col of input.returnColumns) {
+                        if (col in rowData) {
+                            filtered[col] = rowData[col];
+                        }
+                    }
+                    filtered["_similarity"] = row._similarity;
+                    return filtered;
+                }
+                // No returnColumns specified: include all except vector column (for cleaner output)
+                if (!includeVectorInResults) {
+                    return Object.fromEntries(Object.entries(rowData).filter(([key]) => key !== input.vectorColumn));
+                }
+                return row;
+            });
+            return {
+                success: true,
+                metric: input.metric,
+                count: results.length,
+                results,
+            };
+        },
+    };
+}
+/**
+ * Get a vector by ID
+ */
+function createVectorGetTool(adapter) {
+    return {
+        name: "sqlite_vector_get",
+        description: "Retrieve a vector by its ID.",
+        group: "vector",
+        inputSchema: VectorGetSchema,
+        outputSchema: VectorGetOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Get Vector"),
+        handler: async (params, _context) => {
+            const input = VectorGetSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const idColumn = sanitizeIdentifier(input.idColumn);
+            // Keep vectorColumn raw for JS object access, but validate
+            sanitizeIdentifier(input.vectorColumn);
+            const idValue = typeof input.id === "string" ? `'${input.id}'` : input.id;
+            const sql = `SELECT * FROM ${table} WHERE ${idColumn} = ${idValue}`;
+            const result = await adapter.executeReadQuery(sql);
+            if (!result.rows || result.rows.length === 0) {
+                return { success: false, error: "Vector not found" };
+            }
+            const row = result.rows[0];
+            if (!row) {
+                return { success: false, error: "Vector not found" };
+            }
+            const vectorData = parseVector(row[input.vectorColumn]);
+            return {
+                success: true,
+                id: input.id,
+                dimensions: vectorData.length,
+                vector: vectorData,
+                metadata: row,
+            };
+        },
+    };
+}
+/**
+ * Delete vectors by ID
+ */
+function createVectorDeleteTool(adapter) {
+    return {
+        name: "sqlite_vector_delete",
+        description: "Delete vectors by their IDs.",
+        group: "vector",
+        inputSchema: VectorDeleteSchema,
+        outputSchema: VectorDeleteOutputSchema,
+        requiredScopes: ["write"],
+        annotations: destructive("Delete Vectors"),
+        handler: async (params, _context) => {
+            const input = VectorDeleteSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const idColumn = sanitizeIdentifier(input.idColumn);
+            const idValues = input.ids
+                .map((id) => (typeof id === "string" ? `'${id}'` : String(id)))
+                .join(", ");
+            const sql = `DELETE FROM ${table} WHERE ${idColumn} IN (${idValues})`;
+            const result = await adapter.executeWriteQuery(sql);
+            return {
+                success: true,
+                deleted: result.rowsAffected,
+            };
+        },
+    };
+}
+/**
+ * Count vectors
+ */
+function createVectorCountTool(adapter) {
+    return {
+        name: "sqlite_vector_count",
+        description: "Count vectors in a table.",
+        group: "vector",
+        inputSchema: VectorCountSchema,
+        outputSchema: VectorCountOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Count Vectors"),
+        handler: async (params, _context) => {
+            const input = VectorCountSchema.parse(params);
+            // Validate and quote table name
+            const table = sanitizeIdentifier(input.table);
+            const sql = `SELECT COUNT(*) as count FROM ${table}`;
+            const result = await adapter.executeReadQuery(sql);
+            return {
+                success: true,
+                count: result.rows?.[0]?.["count"] ?? 0,
+            };
+        },
+    };
+}
+/**
+ * Vector statistics
+ */
+function createVectorStatsTool(adapter) {
+    return {
+        name: "sqlite_vector_stats",
+        description: "Get statistics about vectors in a table.",
+        group: "vector",
+        inputSchema: VectorStatsSchema,
+        outputSchema: VectorStatsOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Vector Stats"),
+        handler: async (params, _context) => {
+            const input = VectorStatsSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const vectorColumn = sanitizeIdentifier(input.vectorColumn);
+            // Get sample of vectors
+            const sql = `SELECT ${vectorColumn} FROM ${table} LIMIT ${input.sampleSize}`;
+            const result = await adapter.executeReadQuery(sql);
+            const vectors = (result.rows ?? [])
+                .map((row) => {
+                try {
+                    return parseVector(row[input.vectorColumn]);
+                }
+                catch {
+                    return null;
+                }
+            })
+                .filter((v) => v !== null);
+            if (vectors.length === 0) {
+                return {
+                    success: true,
+                    count: 0,
+                    message: "No valid vectors found",
+                };
+            }
+            const firstVector = vectors[0];
+            if (!firstVector) {
+                return {
+                    success: true,
+                    count: 0,
+                    message: "No valid vectors found",
+                };
+            }
+            const dimensions = firstVector.length;
+            const magnitudes = vectors.map((v) => Math.sqrt(v.reduce((s, x) => s + x * x, 0)));
+            return {
+                success: true,
+                sampleSize: vectors.length,
+                dimensions,
+                magnitudeStats: {
+                    min: Math.min(...magnitudes),
+                    max: Math.max(...magnitudes),
+                    avg: magnitudes.reduce((s, m) => s + m, 0) / magnitudes.length,
+                },
+            };
+        },
+    };
+}
+/**
+ * Get vector dimensions
+ */
+function createVectorDimensionsTool(adapter) {
+    return {
+        name: "sqlite_vector_dimensions",
+        description: "Get the dimensions of vectors in a table.",
+        group: "vector",
+        inputSchema: VectorDimensionsSchema,
+        outputSchema: VectorDimensionsOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Vector Dimensions"),
+        handler: async (params, _context) => {
+            const input = VectorDimensionsSchema.parse(params);
+            // Validate and quote identifiers
+            const table = sanitizeIdentifier(input.table);
+            const vectorColumn = sanitizeIdentifier(input.vectorColumn);
+            const sql = `SELECT ${vectorColumn} FROM ${table} LIMIT 1`;
+            const result = await adapter.executeReadQuery(sql);
+            if (!result.rows || result.rows.length === 0) {
+                return { success: true, dimensions: null, message: "No vectors found" };
+            }
+            const firstRow = result.rows[0];
+            if (!firstRow) {
+                return { success: true, dimensions: null, message: "No vectors found" };
+            }
+            const vector = parseVector(firstRow[input.vectorColumn]);
+            return {
+                success: true,
+                dimensions: vector.length,
+            };
+        },
+    };
+}
+/**
+ * Normalize a vector
+ */
+function createVectorNormalizeTool() {
+    return {
+        name: "sqlite_vector_normalize",
+        description: "Normalize a vector to unit length.",
+        group: "vector",
+        inputSchema: VectorNormalizeSchema,
+        outputSchema: VectorNormalizeOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Normalize Vector"),
+        handler: (params, _context) => {
+            const input = VectorNormalizeSchema.parse(params);
+            const normalized = normalizeVector(input.vector);
+            return Promise.resolve({
+                success: true,
+                original: input.vector,
+                normalized,
+                originalMagnitude: Math.sqrt(input.vector.reduce((s, x) => s + x * x, 0)),
+            });
+        },
+    };
+}
+/**
+ * Calculate distance between two vectors
+ */
+function createVectorDistanceTool() {
+    return {
+        name: "sqlite_vector_distance",
+        description: "Calculate distance or similarity between two vectors.",
+        group: "vector",
+        inputSchema: VectorDistanceSchema,
+        outputSchema: VectorDistanceOutputSchema,
+        requiredScopes: ["read"],
+        annotations: readOnly("Vector Distance"),
+        handler: (params, _context) => {
+            const input = VectorDistanceSchema.parse(params);
+            if (input.vector1.length !== input.vector2.length) {
+                return Promise.resolve({
+                    success: false,
+                    error: "Vector dimensions must match",
+                });
+            }
+            let result;
+            switch (input.metric) {
+                case "euclidean":
+                    result = euclideanDistance(input.vector1, input.vector2);
+                    break;
+                case "dot":
+                    result = dotProduct(input.vector1, input.vector2);
+                    break;
+                case "cosine":
+                default:
+                    result = cosineSimilarity(input.vector1, input.vector2);
+            }
+            return Promise.resolve({
+                success: true,
+                metric: input.metric,
+                value: Math.round(result * 10000) / 10000,
+            });
+        },
+    };
+}
+//# sourceMappingURL=vector.js.map

package/dist/adapters/sqlite/tools/vector.js.map

@@ -0,0 +1 @@
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package/dist/adapters/sqlite/tools/virtual.d.ts

@@ -0,0 +1,13 @@
+/**
+ * SQLite Virtual Table Tools
+ *
+ * Create and manage virtual tables for CSV, R-Tree, generation, etc.
+ * 13 tools total.
+ */
+import type { SqliteAdapter } from "../SqliteAdapter.js";
+import type { ToolDefinition } from "../../../types/index.js";
+/**
+ * Get all virtual table tools
+ */
+export declare function getVirtualTools(adapter: SqliteAdapter): ToolDefinition[];
+//# sourceMappingURL=virtual.d.ts.map

package/dist/adapters/sqlite/tools/virtual.d.ts.map

@@ -0,0 +1 @@
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