darwin-agents 0.6.0-alpha.1 → 0.7.0-alpha.1

package/CHANGELOG.md

@@ -2,6 +2,87 @@
 
 ## [Unreleased]
 
+## [0.7.0-alpha.1] — 2026-06-19
+
+**Statistical rigor + coverage sampling.** Six additive, opt-in upgrades that
+make the self-evolution loop statistically honest and bring the GEPA optimizer
+closer to the paper. With the new flags off, the evolution loop, the A/B gate,
+and prompt mutation are byte-for-byte identical to v0.6.0 — except the feedback
+window default (see **Changed**). Reviewed by a 3-agent code-review round
+(critic + analyst + research) plus per-fix re-verification. **436 tests green**
+(was 355, +81), `tsc` + `typecheck:tests` + `build` all clean. Zero hard deps
+preserved — the new embedding capability is **injected** (`EmbedFn`), and the
+coverage RNG is injected too, so the pure modules stay pure.
+
+### Added
+
+- **Always-valid sequential A/B testing** (`src/evolution/sequential.ts`, new):
+  `msprtTwoSample` (Mixture SPRT, Gaussian-mixture prior, Welch variance of the
+  difference of means) and `hoeffdingTwoSample` (σ-free time-uniform confidence
+  sequence for bounded scores). Wired into the safety gate via
+  `SafetyThresholds.confidenceMethod: 'effect-size' | 'msprt' | 'hoeffding'`
+  (+ `confidenceAlpha` / `confidenceTau` / `confidenceMinSamples` /
+  `confidenceScoreRange`). Only consulted when `requireConfidence` is on;
+  defaults to the v0.6.0 effect-size heuristic. This is the rigorous upgrade to
+  the peeking-resistant gate promised in the v0.6 roadmap. The loop loads the
+  per-arm composite samples (`ExperimentTracker.getCompositeScores`) only when a
+  sequential method is configured.
+- **ε-Pareto dominance** (`dominatesEpsilon` in `pareto.ts`) +
+  `EvolutionConfig.paretoEpsilon`. A small relative tolerance (applied
+  symmetrically to both the regression and the strict-better check) lets the
+  `paretoGate` accept a challenger that wins big on one objective while
+  regressing microscopically (≤ ε) on another — instead of rejecting it over
+  noise. `paretoEpsilon: 0` (default) is exactly the strict v0.6.0 gate.
+- **Instance-wise coverage sampling** (GEPA Algorithm 2) in `pareto.ts`:
+  `coverageFrontier`, `coverageWeights`, `selectByCoverage` (deterministic,
+  diversity-preserving survivor selection), and `sampleByCoverage`
+  (coverage-proportional candidate sampling with an **injected** RNG). Opt-in in
+  the GEPA loop via `GepaNextGenerationOptions.useCoverage` + a per-variant
+  `perKeyScores` map. Closes the long-standing "coverage sampling = backlog for
+  V0.6" deferral.
+- **Semantic (embedding-distance) alignment guard**
+  (`checkAlignmentPreservationSemantic` in `alignment.ts`) + injectable
+  `EmbedFn`. When an embedder is wired into the loop (`DarwinLoopDeps.embed`),
+  a mutation that *rewords* a safety constraint (rather than removing it) is no
+  longer a false-positive rejection. Fail-closed: no embedder, an embedder
+  error, or malformed output all fall back to the strict keyword check, so the
+  guard never weakens.
+- **Epoch-shuffled reflection minibatch** (`epochShuffledMinibatch` in
+  `optimizer-gepa.ts`) + `EvolutionConfig.reflectionMinibatchSize`. Reflect on a
+  focused, rotating subset of the feedback window each cycle (GEPA's
+  `reflection_minibatch_size` + epoch-shuffled sampler, adapted to the online
+  loop), so reflection prompts stay tight while still covering the whole window.
+- **Style-bias-free judging** (`stripMarkdownForJudging` in `multi-critic.ts`) +
+  `RunMultiCriticOptions.normalizeForJudging` / `EvolutionConfig.normalizeForJudging`.
+  Strips markdown to plain prose before the multi-critic scores an output, so the
+  judge measures content, not formatting (LLM judges carry a documented style
+  bias toward markdown). Off by default; turn on for prose agents, leave off when
+  the output format itself is the deliverable.
+
+### Changed
+
+- **`EvolutionConfig.feedbackWindow` default is 15** (was a hard-coded 5). This
+  is the v0.6-roadmap "feedback window 5→15" upgrade: both the legacy optimizer
+  and the GEPA reflector now see more recent critic feedback by default. This is
+  the one default-path behaviour change in this release — set
+  `feedbackWindow: 5` to restore the exact v0.6.0 input. A larger window is more
+  information for the optimizer, not a regression, but it is called out here so
+  the change is not silent.
+
+### Notes
+
+- The sequential-confidence gate (`requireConfidence` + `confidenceMethod`) and
+  the semantic-alignment embedder (`embed`) are configured through the **library
+  API** — construct `new SafetyGate({ requireConfidence, confidenceMethod })`
+  and `new DarwinLoop({ ..., safety, embed })`. The bundled `darwin` CLI runs
+  with safety defaults; the per-agent `EvolutionConfig` knobs (`useGepa`,
+  `paretoGate`, `paretoEpsilon`, `useCoverage` via `perKeyScores`,
+  `feedbackWindow`, `reflectionMinibatchSize`, `normalizeForJudging`) are honored
+  by any loop constructed with the agent.
+- The mSPRT closed form is expressed in estimator coordinates with the Welch
+  variance of the difference of means — robust to unequal arm variances and free
+  of the sample-mean form's `n` vs `n²` ambiguity.
+
 ## [0.6.0-alpha.1] — 2026-06-10
 
 **GEPA goes online.** The GEPA-style reflective optimizer (shipped as a

package/README.md

@@ -143,6 +143,45 @@ paths. Pair with `requireConfidence` on your `SafetyThresholds` for a
 peeking-resistant A/B gate. All of it is off unless you opt in — existing
 agents behave exactly as before.
 
+### Statistical rigor + coverage sampling (v0.7, opt-in)
+
+v0.7 makes the evolution loop statistically honest and brings the GEPA optimizer
+closer to the paper. Every piece is additive and off by default (one exception:
+the feedback window default rose from 5 to 15):
+
+```typescript
+import { SafetyGate, DarwinLoop } from 'darwin-agents';
+
+// Always-valid sequential A/B gate — peeking-resistant after every run.
+const safety = new SafetyGate({
+  minDataPoints: 10,
+  maxRegression: 0.2,
+  failureRollbackThreshold: 3,
+  requireConfidence: true,
+  confidenceMethod: 'msprt',   // Mixture SPRT (or 'hoeffding' — σ-free, conservative)
+});
+
+const loop = new DarwinLoop({
+  memory, tracker, optimizer, safety, patterns, agent,
+  embed: myBatchEmbedder,      // opt-in semantic alignment guard (zero hard deps — injected)
+});
+```
+
+- **mSPRT / Hoeffding confidence sequences** — a margin win is adopted only when
+  it clears an always-valid significance bar, so monitoring after every run no
+  longer inflates false positives.
+- **ε-Pareto gate** (`evolution.paretoEpsilon`) — forgive a microscopic
+  regression on one objective when a challenger wins decisively on another.
+- **Instance-wise coverage sampling** (`useCoverage` + per-variant `perKeyScores`)
+  — GEPA Algorithm 2: keep/sample the variants that excel on the most *different*
+  task subsets, not N copies of the global-average winner.
+- **Semantic alignment guard** — a *reworded* safety constraint is no longer a
+  false rejection; a *removed* one still is (fail-closed without an embedder).
+- **Epoch-shuffled reflection minibatch** (`reflectionMinibatchSize`) + a
+  configurable `feedbackWindow` (default 15).
+- **Style-bias-free judging** (`normalizeForJudging`) — strip markdown before the
+  critic scores, so it measures content not formatting.
+
 ## Built-in Agents
 
 | Agent | What it does | Needs |
@@ -397,7 +436,7 @@ The safety gate prevents regressions. If a new variant scores >20% lower, Darwin
 ## Known Limitations
 
 - **LLM-as-Judge bias**: Critics use LLMs to evaluate LLM outputs. We mitigate this with multi-model critics (GPT + Claude), but inherent self-preference bias exists. [Research context](https://openreview.net/forum?id=Ns8zGZ0lmM).
-- **Statistical simplicity**: A/B tests use mean comparison with a 5% threshold by default, not formal significance tests. `computeDynamicMinRuns()` adjusts sample sizes based on variance, and v0.6 adds an opt-in `requireConfidence` gate (effect-size + sample-size guard) that resists the peeking problem of evaluating after every run. A proper sequential test (mSPRT / always-valid confidence sequences) is the next step on the roadmap.
+- **Statistical simplicity (default)**: A/B tests use mean comparison with a 5% threshold by default, not formal significance tests. `computeDynamicMinRuns()` adjusts sample sizes based on variance. For rigor, v0.6 added an opt-in `requireConfidence` effect-size gate and **v0.7 ships proper always-valid sequential tests** — set `confidenceMethod: 'msprt'` (Mixture SPRT) or `'hoeffding'` (σ-free confidence sequence) on your `SafetyThresholds` to make the peeking-resistant gate statistically sound. The default path remains the simple threshold for zero-config use.
 - **No human-in-the-loop approval**: Prompt mutations go directly to A/B testing. Telegram notifications inform you, but there's no approval gate before testing starts.
 
 ## Contributing

package/dist/src/cli/run.js

@@ -264,7 +264,7 @@ async function runCommandInner(flags, agent, config, memory) {
                     provider: criticInfo?.provider,
                 });
                 return criticRun.output;
-            }, agent.name);
+            }, agent.name, { normalizeForJudging: agent.evolution?.normalizeForJudging });
             if (multiResult.medianScore > 0) {
                 result.experiment.metrics.qualityScore = multiResult.medianScore;
                 result.experiment.feedback = {

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package/dist/src/evolution/alignment.d.ts

@@ -45,4 +45,48 @@ export declare const SAFETY_PATTERNS: RegExp[];
  *   or a human-readable rejection reason naming the eroded keywords.
  */
 export declare function checkAlignmentPreservation(original: string, mutated: string): string | null;
+/**
+ * Batch embedding function. Returns one vector per input text (same order).
+ * INJECTED — Darwin keeps zero hard deps, so the caller supplies the embedder
+ * (OpenAI `text-embedding-3-small`, a local model, Anthropic, whatever). Pure
+ * keyword checking needs none of this; semantic checking is strictly opt-in.
+ *
+ * NEW v0.7.0.
+ */
+export type EmbedFn = (texts: string[]) => Promise<number[][]>;
+export interface SemanticAlignmentOptions {
+    /** Injected batch embedder. When omitted, the check is keyword-only (fail-closed). */
+    embed?: EmbedFn;
+    /**
+     * Cosine-similarity threshold above which an eroded safety keyword is judged
+     * to have been REWORDED (not removed) and the mutation is accepted. Default
+     * 0.82 — high enough that only a genuinely equivalent restatement passes.
+     */
+    minSafetySimilarity?: number;
+}
+/**
+ * Semantic alignment guard (v0.7.0) — the embedding-distance upgrade to the
+ * keyword-count {@link checkAlignmentPreservation}. The keyword check is
+ * conservative BY DESIGN: it rejects a reworded-but-equivalent constraint
+ * ("never reveal secrets" → "you must keep secrets confidential") as if the
+ * safety instruction were removed. That false-positive costs a wasted
+ * evolution cycle every time the optimizer legitimately rephrases.
+ *
+ * This function keeps the keyword check as the first, cheap gate, and ONLY
+ * when it trips does it spend embeddings to ask: "is the safety statement
+ * still semantically present, just worded differently?" For every safety
+ * sentence in the original that contained an eroded keyword, it checks whether
+ * the mutated prompt still contains a sentence above `minSafetySimilarity`. If
+ * EVERY eroded safety sentence has a close semantic match, the rewording is
+ * accepted (returns null). Otherwise the keyword rejection stands.
+ *
+ * Fail-closed contract preserved:
+ *   - keyword check passes ⇒ null (no embedding spent)
+ *   - keyword check fails AND no `embed` supplied ⇒ keyword rejection (== sync)
+ *   - keyword check fails, embed supplied, embedding errors ⇒ keyword rejection
+ *
+ * So a missing/broken embedder NEVER weakens the guard — it just falls back to
+ * the strict keyword behaviour.
+ */
+export declare function checkAlignmentPreservationSemantic(original: string, mutated: string, opts?: SemanticAlignmentOptions): Promise<string | null>;
 //# sourceMappingURL=alignment.d.ts.map

package/dist/src/evolution/alignment.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"alignment.d.ts","sourceRoot":"","sources":["../../../src/evolution/alignment.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AAEH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,eAAe,EAAE,MAAM,EAWnC,CAAC;AAEF;;;;;;GAMG;AACH,wBAAgB,0BAA0B,CACxC,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,GACd,MAAM,GAAG,IAAI,CAuBf;AAID;;;;;;;GAOG;AACH,MAAM,MAAM,OAAO,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;AAE/D,MAAM,WAAW,wBAAwB;IACvC,sFAAsF;IACtF,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;;OAIG;IACH,mBAAmB,CAAC,EAAE,MAAM,CAAC;CAC9B;AAID;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AACH,wBAAsB,kCAAkC,CACtD,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,IAAI,GAAE,wBAA6B,GAClC,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAqDxB"}

package/dist/src/evolution/alignment.js

@@ -74,4 +74,128 @@ export function checkAlignmentPreservation(original, mutated) {
     }
     return null;
 }
+const DEFAULT_SAFETY_SIMILARITY = 0.82;
+/**
+ * Semantic alignment guard (v0.7.0) — the embedding-distance upgrade to the
+ * keyword-count {@link checkAlignmentPreservation}. The keyword check is
+ * conservative BY DESIGN: it rejects a reworded-but-equivalent constraint
+ * ("never reveal secrets" → "you must keep secrets confidential") as if the
+ * safety instruction were removed. That false-positive costs a wasted
+ * evolution cycle every time the optimizer legitimately rephrases.
+ *
+ * This function keeps the keyword check as the first, cheap gate, and ONLY
+ * when it trips does it spend embeddings to ask: "is the safety statement
+ * still semantically present, just worded differently?" For every safety
+ * sentence in the original that contained an eroded keyword, it checks whether
+ * the mutated prompt still contains a sentence above `minSafetySimilarity`. If
+ * EVERY eroded safety sentence has a close semantic match, the rewording is
+ * accepted (returns null). Otherwise the keyword rejection stands.
+ *
+ * Fail-closed contract preserved:
+ *   - keyword check passes ⇒ null (no embedding spent)
+ *   - keyword check fails AND no `embed` supplied ⇒ keyword rejection (== sync)
+ *   - keyword check fails, embed supplied, embedding errors ⇒ keyword rejection
+ *
+ * So a missing/broken embedder NEVER weakens the guard — it just falls back to
+ * the strict keyword behaviour.
+ */
+export async function checkAlignmentPreservationSemantic(original, mutated, opts = {}) {
+    const keywordResult = checkAlignmentPreservation(original, mutated);
+    if (keywordResult === null)
+        return null; // safe — fast path, no embeddings
+    if (!opts.embed)
+        return keywordResult; // fail-closed: keyword-only
+    const threshold = Number.isFinite(opts.minSafetySimilarity) &&
+        opts.minSafetySimilarity > 0 &&
+        opts.minSafetySimilarity <= 1
+        ? opts.minSafetySimilarity
+        : DEFAULT_SAFETY_SIMILARITY;
+    // Which patterns actually eroded? Re-derive from SAFETY_PATTERNS.
+    const eroded = erodedPatterns(original, mutated);
+    if (eroded.length === 0)
+        return keywordResult; // shouldn't happen, be safe
+    // Original sentences carrying an eroded safety keyword = the statements we
+    // must prove still exist (semantically) in the mutated prompt.
+    const originalSentences = splitSentences(original);
+    const safetySentences = originalSentences.filter((s) => eroded.some((p) => new RegExp(p.source, 'i').test(s)));
+    if (safetySentences.length === 0)
+        return keywordResult;
+    const mutatedSentences = splitSentences(mutated);
+    if (mutatedSentences.length === 0)
+        return keywordResult; // nothing to match → reject
+    try {
+        // One batched embed call: [...safetySentences, ...mutatedSentences].
+        const all = await opts.embed([...safetySentences, ...mutatedSentences]);
+        if (!Array.isArray(all) || all.length !== safetySentences.length + mutatedSentences.length) {
+            return keywordResult; // malformed embedder output → fail-closed
+        }
+        const safetyVecs = all.slice(0, safetySentences.length);
+        const mutatedVecs = all.slice(safetySentences.length);
+        // Every eroded safety sentence must have a close match in the mutation.
+        for (const sv of safetyVecs) {
+            let best = -Infinity;
+            for (const mv of mutatedVecs) {
+                const sim = cosine(sv, mv);
+                if (sim > best)
+                    best = sim;
+            }
+            if (!(best >= threshold)) {
+                // This safety statement has no semantic equivalent in the mutation.
+                return keywordResult;
+            }
+        }
+        // All eroded safety statements survive semantically → reworded, accept.
+        return null;
+    }
+    catch {
+        return keywordResult; // embedder threw → fail-closed
+    }
+}
+/** SAFETY_PATTERNS whose occurrence count dropped from original → mutated. */
+function erodedPatterns(original, mutated) {
+    const o = original.toLowerCase();
+    const m = mutated.toLowerCase();
+    const out = [];
+    for (const pattern of SAFETY_PATTERNS) {
+        const oc = o.match(new RegExp(pattern.source, 'gi'))?.length ?? 0;
+        const mc = m.match(new RegExp(pattern.source, 'gi'))?.length ?? 0;
+        if (oc > 0 && mc < oc)
+            out.push(pattern);
+    }
+    return out;
+}
+/**
+ * Split prose into trimmed, non-empty sentences. Boundaries: terminal
+ * punctuation followed by whitespace, terminal punctuation directly followed
+ * by an uppercase letter (handles "...secrets.Be transparent." with no space —
+ * otherwise two sentences fuse and a dropped safety constraint could ride in
+ * on a partial semantic match), or newlines.
+ */
+function splitSentences(text) {
+    return text
+        .split(/(?<=[.!?])\s+|(?<=[.!?])(?=[A-Z])|\n+/)
+        .map((s) => s.trim())
+        .filter((s) => s.length > 0);
+}
+/** Cosine similarity. Returns 0 for zero/length-mismatched/non-finite vectors. */
+function cosine(a, b) {
+    if (!Array.isArray(a) || !Array.isArray(b) || a.length === 0 || a.length !== b.length) {
+        return 0;
+    }
+    let dot = 0;
+    let na = 0;
+    let nb = 0;
+    for (let i = 0; i < a.length; i++) {
+        const av = a[i];
+        const bv = b[i];
+        if (!Number.isFinite(av) || !Number.isFinite(bv))
+            return 0;
+        dot += av * bv;
+        na += av * av;
+        nb += bv * bv;
+    }
+    if (na === 0 || nb === 0)
+        return 0;
+    return dot / (Math.sqrt(na) * Math.sqrt(nb));
+}
 //# sourceMappingURL=alignment.js.map

package/dist/src/evolution/alignment.js.map

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package/dist/src/evolution/loop.d.ts

@@ -16,6 +16,7 @@ import type { SafetyGate } from './safety.js';
 import type { PatternDetector } from './patterns.js';
 import type { NotificationConfig } from './notifications.js';
 import type { GepaOptimizer } from './optimizer-gepa.js';
+import { type EmbedFn } from './alignment.js';
 export interface EvolutionResult {
     patternsFound: DarwinPattern[];
     promptEvolved: boolean;
@@ -43,6 +44,20 @@ interface DarwinLoopDeps {
      * false) to keep the legacy single-shot path — behaviour is unchanged.
      */
     gepa?: GepaOptimizer;
+    /**
+     * v0.7.0 — Optional batch embedder. When present, the GEPA mutation path
+     * upgrades its alignment guard from keyword-count to the semantic
+     * (embedding-distance) check: a safety constraint that was REWORDED (not
+     * removed) is accepted instead of triggering a false-positive rejection.
+     * When omitted, the guard stays keyword-only (fail-closed). Darwin keeps
+     * zero hard deps — you inject the embedder.
+     */
+    embed?: EmbedFn;
+    /**
+     * v0.7.0 — Cosine-similarity threshold for the semantic alignment guard
+     * (only used when `embed` is set). Default 0.82.
+     */
+    alignmentSimilarityThreshold?: number;
 }
 export declare class DarwinLoop {
     private memory;
@@ -53,6 +68,8 @@ export declare class DarwinLoop {
     private agent?;
     private notifications;
     private gepa?;
+    private embed?;
+    private alignmentSimilarityThreshold?;
     constructor(deps: DarwinLoopDeps);
     /**
      * Called AFTER every agent run. Drives the evolution cycle.
@@ -76,6 +93,17 @@ export declare class DarwinLoop {
      * Activate a specific prompt version and deactivate all others.
      */
     private activateVersion;
+    /**
+     * v0.7.0 — Configurable feedback window (default 15, was a hard-coded 5).
+     * A larger window gives both the legacy optimizer and the GEPA reflector
+     * more of the recent behaviour to learn from. Clamped to ≥ 1.
+     */
+    private feedbackWindow;
+    /**
+     * v0.7.0 — Parse the integer out of a "vN" version string for use as the
+     * epoch-shuffled-minibatch epoch. "v1"→1, "v12"→12; non-parsable→0.
+     */
+    private versionInt;
     /**
      * Extract recent critic feedback reports from experiments.
      *

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