daftari 1.9.1 → 1.10.0

package/CHANGELOG.md

@@ -7,6 +7,27 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [1.10.0] - 2026-05-21
+
+### Added
+
+- **Per-vault process lockfile** (#52). Daftari now acquires
+  `.daftari/process.lock` on startup and refuses to share a vault with
+  another live daftari process. If a live instance is already holding the
+  vault, the new instance sends SIGTERM to the holder, waits up to 3
+  seconds for it to exit, then takes over. Stale lockfiles (dead PID, or
+  PID recycled to an unrelated process) are overwritten silently. This is
+  defense-in-depth against MCP clients that leak server subprocesses on
+  timeout/reconnect — the reported symptom was 112 daftari processes
+  accumulating against one vault. With the lock, at most one process
+  holds the vault at any time.
+
+  **Known limitation:** the takeover interrupts in-flight reindex. On
+  first run against a large vault, if the MCP client is in a tight
+  retry/respawn loop, the index may be repeatedly aborted before it
+  completes. Workaround: run `daftari --vault <path> --reindex` once
+  manually from the shell. Resumable reindex is tracked as a follow-up.
+
 ## [1.9.1] - 2026-05-21
 
 ### Fixed

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAuCA,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CASrE;AAED,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,IAAI,CAE3D;AAED,wBAAsB,IAAI,CAAC,IAAI,GAAE,MAAM,EAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CA4HhF"}

package/dist/index.js

@@ -17,6 +17,7 @@ import { resolve } from "node:path";
 import { pathToFileURL } from "node:url";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
 import { GUEST_ROLE, resolveAccess } from "./access/rbac.js";
+import { acquireLock, releaseLock } from "./lifecycle/lock.js";
 import { markIndexError, markIndexing, markIndexReady, setIndexProgress, } from "./search/index-state.js";
 import { isIndexFresh, reindexVault } from "./search/reindex.js";
 import { setProvider, warmModel } from "./search/vector.js";
@@ -24,6 +25,9 @@ import { startWatcher } from "./search/watcher.js";
 import { createServer } from "./server.js";
 import { directoryExists } from "./storage/local.js";
 import { loadConfig } from "./utils/config.js";
+// Kept in sync with package.json. Surfaced in the process lockfile for
+// operator diagnostics. Bump both together on a release.
+const DAFTARI_VERSION = "1.10.0";
 // Reads `--name value` or `--name=value` from argv; null if absent.
 export function parseFlag(argv, name) {
     const flag = `--${name}`;
@@ -52,6 +56,18 @@ export async function main(argv = process.argv.slice(2)) {
         process.exitCode = 1;
         return;
     }
+    // Acquire the per-vault process lock BEFORE any heavy work. If another
+    // daftari is holding this vault, SIGTERM it and wait briefly for it to
+    // exit. See docs/superpowers/plans/2026-05-20-process-lockfile.md (#52).
+    const lockResult = await acquireLock(vaultRoot, DAFTARI_VERSION);
+    if (!lockResult.ok) {
+        process.stderr.write(`daftari: failed to acquire vault lock: ${lockResult.error.message}\n`);
+        process.exitCode = 1;
+        return;
+    }
+    // Install shutdown handlers immediately so the lock is released even if
+    // startup fails between here and the transport opening.
+    installShutdownHandlers(vaultRoot);
     // Load the RBAC config. A malformed config fails loud: the server must not
     // start serving content under a policy it could not parse.
     const config = loadConfig(vaultRoot);
@@ -141,6 +157,27 @@ export async function main(argv = process.argv.slice(2)) {
 // Reference held so a SIGTERM / SIGINT can close the watcher cleanly. One
 // per process — the server runs against one vault for its lifetime.
 let activeWatcher = null;
+// Install once, regardless of whether the watcher starts. The lock release
+// must run for all exit paths:
+//   - SIGTERM / SIGINT (parent MCP client closing the pipe, or another
+//     daftari instance taking over): onShutdown explicitly releases.
+//   - Normal completion of --reindex mode: main() returns, the event loop
+//     drains, Node emits 'exit', the registered listener releases.
+// The 'exit' listener is sync-only (Node guarantees the loop is closed by
+// then), which is why releaseLock is sync.
+function installShutdownHandlers(vaultRoot) {
+    const onShutdown = () => {
+        if (activeWatcher) {
+            const w = activeWatcher;
+            activeWatcher = null;
+            void w.close();
+        }
+        releaseLock(vaultRoot);
+    };
+    process.once("SIGTERM", onShutdown);
+    process.once("SIGINT", onShutdown);
+    process.once("exit", () => releaseLock(vaultRoot));
+}
 // Spawns the chokidar watcher when config.watch !== false. Wired here, not
 // at module load, so the test entry points (which import main) can run with
 // a config that disables it. Idempotent: a second call is a no-op while the
@@ -154,18 +191,6 @@ function maybeStartWatcher(vaultRoot, watchEnabled) {
         return;
     activeWatcher = startWatcher(vaultRoot);
     process.stderr.write(`daftari: watching vault for out-of-band edits\n`);
-    // Clean shutdown on the signals stdio MCP servers receive when their
-    // parent process closes the pipe. Without this the chokidar handles can
-    // keep the event loop alive past the transport close.
-    const onShutdown = () => {
-        if (!activeWatcher)
-            return;
-        const w = activeWatcher;
-        activeWatcher = null;
-        void w.close();
-    };
-    process.once("SIGTERM", onShutdown);
-    process.once("SIGINT", onShutdown);
 }
 // Loads the embedding model in the background so the first user search does
 // not pay the cold-start latency. Failures (no network on first run, model

package/dist/index.js.map

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package/dist/lifecycle/lock.d.ts

@@ -0,0 +1,15 @@
+import { type Result } from "../frontmatter/types.js";
+export type LockData = {
+    daftari: true;
+    pid: number;
+    vaultRoot: string;
+    startedAt: string;
+    version: string;
+};
+export declare function readLockfile(vaultRoot: string): Result<LockData | null, Error>;
+export declare function writeLockfile(vaultRoot: string, data: LockData): Result<void, Error>;
+export declare function isProcessAlive(pid: number): boolean;
+export declare function isDaftariProcess(pid: number, vaultRoot: string): boolean;
+export declare function acquireLock(vaultRoot: string, version: string): Promise<Result<void, Error>>;
+export declare function releaseLock(vaultRoot: string): void;
+//# sourceMappingURL=lock.d.ts.map

package/dist/lifecycle/lock.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lock.d.ts","sourceRoot":"","sources":["../../src/lifecycle/lock.ts"],"names":[],"mappings":"AAgBA,OAAO,EAAW,KAAK,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAE/D,MAAM,MAAM,QAAQ,GAAG;IACrB,OAAO,EAAE,IAAI,CAAC;IACd,GAAG,EAAE,MAAM,CAAC;IACZ,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,MAAM,CAAC;CACjB,CAAC;AAMF,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,GAAG,IAAI,EAAE,KAAK,CAAC,CAmB9E;AAED,wBAAgB,aAAa,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,GAAG,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,CAQpF;AAKD,wBAAgB,cAAc,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAQnD;AAaD,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAYxE;AA8CD,wBAAsB,WAAW,CAC/B,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,GACd,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC,CA2C9B;AAMD,wBAAgB,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG,IAAI,CASnD"}

package/dist/lifecycle/lock.js

@@ -0,0 +1,184 @@
+// Process-level lockfile for a vault. Prevents two daftari processes from
+// running against the same vault concurrently and corrupting the shared
+// index.db. See docs/superpowers/plans/2026-05-20-process-lockfile.md (#52).
+import { execFileSync } from "node:child_process";
+import { closeSync, mkdirSync, openSync, readFileSync, unlinkSync, writeFileSync, writeSync, } from "node:fs";
+import { join } from "node:path";
+import { setTimeout as sleep } from "node:timers/promises";
+import { err, ok } from "../frontmatter/types.js";
+function lockPath(vaultRoot) {
+    return join(vaultRoot, ".daftari", "process.lock");
+}
+export function readLockfile(vaultRoot) {
+    try {
+        const raw = readFileSync(lockPath(vaultRoot), "utf-8");
+        const parsed = JSON.parse(raw);
+        if (typeof parsed === "object" &&
+            parsed !== null &&
+            parsed.daftari === true &&
+            typeof parsed.pid === "number") {
+            return ok(parsed);
+        }
+        return ok(null);
+    }
+    catch (e) {
+        const errno = e;
+        if (errno.code === "ENOENT")
+            return ok(null);
+        if (e instanceof SyntaxError)
+            return ok(null);
+        return err(errno);
+    }
+}
+export function writeLockfile(vaultRoot, data) {
+    try {
+        mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
+        writeFileSync(lockPath(vaultRoot), JSON.stringify(data, null, 2), "utf-8");
+        return ok(undefined);
+    }
+    catch (e) {
+        return err(e);
+    }
+}
+// `kill(pid, 0)` is the POSIX way to test process liveness without delivering
+// a signal. ESRCH = no such process; EPERM = exists but not ours (still alive
+// for our purposes — someone else owns it but it exists).
+export function isProcessAlive(pid) {
+    try {
+        process.kill(pid, 0);
+        return true;
+    }
+    catch (e) {
+        const errno = e;
+        return errno.code === "EPERM";
+    }
+}
+// Best-effort check that PID belongs to a daftari process running THIS vault.
+// Protects against PID recycling — if the original daftari died and the OS
+// reassigned its PID to e.g. vim, we must NOT SIGTERM the unrelated process.
+//
+// Uses `ps -p PID -o command=` which is POSIX-portable. Match requires the
+// exact vault path to appear in the command line: daftari's CLI requires
+// `--vault <path>` as a positional argument, so the path is always in argv.
+// We deliberately do NOT match on the substring "daftari" anywhere in the
+// output, because the daftari repo's own path contains that string and would
+// falsely match any node process whose cwd or argv includes the repo root
+// (e.g. vitest workers).
+export function isDaftariProcess(pid, vaultRoot) {
+    if (!isProcessAlive(pid))
+        return false;
+    try {
+        const out = execFileSync("ps", ["-p", String(pid), "-o", "command="], {
+            encoding: "utf-8",
+            stdio: ["ignore", "pipe", "ignore"],
+        }).trim();
+        if (out.length === 0)
+            return false;
+        return out.includes(vaultRoot);
+    }
+    catch {
+        return false;
+    }
+}
+// Wait until pid exits or until timeoutMs elapses. Returns true if pid is
+// gone. Polled with setTimeout so we don't peg a CPU core during the grace
+// window.
+async function waitForExit(pid, timeoutMs) {
+    const POLL_MS = 100;
+    const deadline = Date.now() + timeoutMs;
+    while (Date.now() < deadline) {
+        if (!isProcessAlive(pid))
+            return true;
+        await sleep(POLL_MS);
+    }
+    return !isProcessAlive(pid);
+}
+const SIGTERM_GRACE_MS = 3000;
+// Atomic O_EXCL create. Returns ok(true) if we created the lockfile (sole
+// owner), ok(false) on EEXIST (caller must read and resolve).
+function tryCreateExclusive(vaultRoot, data) {
+    try {
+        mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
+        const fd = openSync(lockPath(vaultRoot), "wx");
+        try {
+            writeSync(fd, JSON.stringify(data, null, 2));
+        }
+        finally {
+            closeSync(fd);
+        }
+        return ok(true);
+    }
+    catch (e) {
+        const errno = e;
+        if (errno.code === "EEXIST")
+            return ok(false);
+        return err(errno);
+    }
+}
+// Acquire the per-vault process lock. Behavior:
+//   - No existing lock → atomic O_EXCL create, return ok.
+//   - Existing lock with dead PID → stale, overwrite.
+//   - Existing lock with live PID that does not look like a daftari for this
+//     vault (PID recycled) → stale, overwrite.
+//   - Existing lock with live daftari for this vault → SIGTERM it, wait up to
+//     3s for exit, then overwrite. If it does not exit, log a warning and
+//     overwrite anyway.
+//
+// Logs go to stderr (MCP convention; stdout is reserved for JSON-RPC).
+export async function acquireLock(vaultRoot, version) {
+    const our = {
+        daftari: true,
+        pid: process.pid,
+        vaultRoot,
+        startedAt: new Date().toISOString(),
+        version,
+    };
+    const created = tryCreateExclusive(vaultRoot, our);
+    if (!created.ok)
+        return created;
+    if (created.value)
+        return ok(undefined);
+    const existing = readLockfile(vaultRoot);
+    if (!existing.ok)
+        return existing;
+    if (existing.value !== null) {
+        const prior = existing.value;
+        if (isDaftariProcess(prior.pid, vaultRoot)) {
+            process.stderr.write(`daftari: another instance is holding this vault (pid=${prior.pid}, ` +
+                `started=${prior.startedAt}); sending SIGTERM and taking over\n`);
+            try {
+                process.kill(prior.pid, "SIGTERM");
+            }
+            catch {
+                // Died between check and signal — fine.
+            }
+            const exited = await waitForExit(prior.pid, SIGTERM_GRACE_MS);
+            if (!exited) {
+                process.stderr.write(`daftari: warning: pid ${prior.pid} did not exit within ` +
+                    `${SIGTERM_GRACE_MS}ms; proceeding anyway\n`);
+            }
+        }
+        else {
+            process.stderr.write(`daftari: removing stale lockfile (pid=${prior.pid} not a live daftari instance)\n`);
+        }
+    }
+    return writeLockfile(vaultRoot, our);
+}
+// Idempotent. Removes the lockfile only if it still belongs to us — protects
+// against a race where takeover happens during our shutdown and we'd
+// otherwise delete the new owner's lock. Stays sync because it runs from
+// `process.on("exit")`, which forbids async work.
+export function releaseLock(vaultRoot) {
+    const existing = readLockfile(vaultRoot);
+    if (!existing.ok || existing.value === null)
+        return;
+    if (existing.value.pid !== process.pid)
+        return;
+    try {
+        unlinkSync(lockPath(vaultRoot));
+    }
+    catch {
+        // Best-effort. If the file is already gone, fine.
+    }
+}
+//# sourceMappingURL=lock.js.map

package/dist/lifecycle/lock.js.map

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package/dist/storage/index-db.d.ts.map

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package/dist/storage/index-db.js

@@ -160,7 +160,8 @@ function loadVecExtension(db) {
             reason.includes("SQLITE_ERROR")) {
             // db.loadExtension threw because the better-sqlite3 build has
             // extension loading compiled out.
-            hint = "Rebuild better-sqlite3 with extension loading enabled: `npm rebuild better-sqlite3 --build-from-source`.";
+            hint =
+                "Rebuild better-sqlite3 with extension loading enabled: `npm rebuild better-sqlite3 --build-from-source`.";
         }
         else {
             // ABI mismatch, OS security policy, or other native-load error.

package/dist/storage/index-db.js.map

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package/dist/tools/read.js

@@ -10,9 +10,9 @@ import { listStaleFiles } from "../curation/staleness.js";
 import { DEFAULT_TENSION_STATUS, listTensions } from "../curation/tension.js";
 import { parseDocument } from "../frontmatter/parser.js";
 import { DOMAINS, err, ok, STATUSES, } from "../frontmatter/types.js";
+import { getProvider } from "../search/vector.js";
 import { countDimMismatches, openIndexDb } from "../storage/index-db.js";
 import { listFiles, readFile, resolveVaultPath } from "../storage/local.js";
-import { getProvider } from "../search/vector.js";
 import { sha256Hex } from "../utils/hash.js";
 export async function vaultRead(vaultRoot, path, access) {
     if (typeof path !== "string" || path.length === 0) {

package/dist/tools/read.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "daftari",
-  "version": "1.9.1",
+  "version": "1.10.0",
   "description": "An open-source, multi-user knowledge vault exposed to AI agents via an MCP server.",
   "license": "MIT",
   "author": "Mihir Wagle / mavaali",