daftari 1.29.0 → 1.31.0

package/dist/curation/tier1.js

@@ -0,0 +1,142 @@
+// Tier 1 of tiered compatibility checking (#232) — type-directed dispatch
+// over the edge provenance classes, deterministic and LLM-free.
+//
+// Given a changed unit and the set of fields the change touched, every
+// dependent gets a verdict whose CEILING is set by the provenance class of
+// the edge that connects it (the 2026-07-17 through-line spec's dispatch
+// rule):
+//
+//   compiled (consumes)      — mechanically certain, so hard verdicts are
+//                              licensed: `unaffected` when the change misses
+//                              every consumed field, `affected` when it hits.
+//   declared (sources)       — a claim, so the positive verdict is only
+//                              `possibly-affected`; never a hard hit.
+//   earned (derives_from)    — an LLM inference with a decay schedule; it
+//                              ROUTES (`semantic-review`, the tier-2 queue)
+//                              and never decides.
+//
+// One certain verdict cuts across all classes: a change that touched nothing
+// but server bookkeeping fields is `unaffected` for every dependent — the
+// CHANGE side of the judgment is certain even when the edge side is a claim.
+//
+// An artifact reachable through several classes keeps the highest-certainty
+// verdict (compiled > declared > earned): a certain skip beats a claim, and
+// a certain hit makes a semantic review redundant.
+//
+// The #232 acceptance metric falls out of the summary: a change "resolves at
+// tier 1" when no dependent needs semantic review — everything was decided
+// deterministically.
+// Server-stamped bookkeeping — changed on every write, consumed by no one's
+// meaning. Never counts as a content change.
+export const BOOKKEEPING_FIELDS = new Set(["updated", "updated_by"]);
+export function contentChangedFields(fields) {
+    const seen = new Set();
+    const out = [];
+    for (const f of fields) {
+        if (BOOKKEEPING_FIELDS.has(f) || seen.has(f))
+            continue;
+        seen.add(f);
+        out.push(f);
+    }
+    return out;
+}
+// Derives the changed-field set from a provenance entry: the frontmatter
+// diff's keys plus "body" when the body changed. An entry from before the
+// body_changed flag existed reports body as changed for a content write —
+// unknown must over-approximate, never silently skip.
+export function changedFieldsFromProvenance(entry) {
+    const fields = Object.keys(entry.frontmatter_diff ?? {});
+    const bodyChanged = entry.body_changed ??
+        (entry.action === "create" || entry.action === "update" || entry.action === "append");
+    if (bodyChanged)
+        fields.push("body");
+    return contentChangedFields(fields);
+}
+const CLASS_RANK = { compiled: 3, declared: 2, earned: 1 };
+export function tier1Dispatch(input) {
+    const changed = contentChangedFields(input.changedFields);
+    const noContentChange = changed.length === 0;
+    const changedList = changed.join(", ");
+    const byArtifact = new Map();
+    const put = (v) => {
+        const prev = byArtifact.get(v.artifact);
+        if (!prev || CLASS_RANK[v.edge_class] > CLASS_RANK[prev.edge_class]) {
+            byArtifact.set(v.artifact, v);
+        }
+    };
+    for (const e of input.compiled) {
+        if (noContentChange) {
+            put({
+                artifact: e.artifact,
+                verdict: "unaffected",
+                edge_class: "compiled",
+                reason: "only bookkeeping fields changed",
+            });
+            continue;
+        }
+        const consumesAll = e.fields.includes("*");
+        const overlap = consumesAll ? changed : e.fields.filter((f) => changed.includes(f));
+        if (overlap.length === 0) {
+            put({
+                artifact: e.artifact,
+                verdict: "unaffected",
+                edge_class: "compiled",
+                reason: `consumed fields [${e.fields.join(", ")}] untouched by change [${changedList}]`,
+            });
+        }
+        else {
+            put({
+                artifact: e.artifact,
+                verdict: "affected",
+                edge_class: "compiled",
+                reason: `consumed ${consumesAll ? "the whole doc" : `[${overlap.join(", ")}]`}, which the change touched`,
+            });
+        }
+    }
+    for (const artifact of input.declaredDependents) {
+        put(noContentChange
+            ? {
+                artifact,
+                verdict: "unaffected",
+                edge_class: "declared",
+                reason: "only bookkeeping fields changed",
+            }
+            : {
+                artifact,
+                verdict: "possibly-affected",
+                edge_class: "declared",
+                reason: `declared sources citation — a claim, so [${changedList}] may or may not matter`,
+            });
+    }
+    for (const artifact of input.earnedDependents) {
+        put(noContentChange
+            ? {
+                artifact,
+                verdict: "unaffected",
+                edge_class: "earned",
+                reason: "only bookkeeping fields changed",
+            }
+            : {
+                artifact,
+                verdict: "semantic-review",
+                edge_class: "earned",
+                reason: "earned derives_from edge — routes to semantic review, never a hard verdict",
+            });
+    }
+    return [...byArtifact.values()].sort((a, b) => a.artifact < b.artifact ? -1 : a.artifact > b.artifact ? 1 : 0);
+}
+export function tier1Summary(verdicts) {
+    const counts = { unaffected: 0, affected: 0, possibly_affected: 0, semantic_review: 0 };
+    for (const v of verdicts) {
+        if (v.verdict === "unaffected")
+            counts.unaffected += 1;
+        else if (v.verdict === "affected")
+            counts.affected += 1;
+        else if (v.verdict === "possibly-affected")
+            counts.possibly_affected += 1;
+        else
+            counts.semantic_review += 1;
+    }
+    return { ...counts, resolved_at_tier1: counts.semantic_review === 0 };
+}
+//# sourceMappingURL=tier1.js.map

package/dist/curation/tier1.js.map

@@ -0,0 +1 @@
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package/dist/curation/tier2.d.ts

@@ -0,0 +1,43 @@
+import { type Result } from "../frontmatter/types.js";
+import type { ProvenanceEntry } from "./provenance.js";
+import type { LoggableTensionKind } from "./tension.js";
+import type { Tier1EdgeClass } from "./tier1.js";
+export declare const NO_CHANGE_TS = "1970-01-01T00:00:00.000Z";
+export declare const TIER2_VERDICT_KINDS: readonly ["still-valid", "broken"];
+export type Tier2VerdictKind = (typeof TIER2_VERDICT_KINDS)[number];
+export interface Tier2Verdict {
+    timestamp: string;
+    artifact: string;
+    unit: string;
+    edge_class: Exclude<Tier1EdgeClass, "compiled">;
+    judged_change_ts: string;
+    verdict: Tier2VerdictKind;
+    tension_kind?: LoggableTensionKind;
+    tension_id?: string;
+    reasoning: string;
+    agent: string;
+    principal?: string;
+    run_id?: string;
+}
+export declare function tier2VerdictsPath(vaultRoot: string): string;
+export declare function recordTier2Verdict(vaultRoot: string, entry: Omit<Tier2Verdict, "timestamp"> & {
+    timestamp?: string;
+}): Promise<Result<Tier2Verdict, Error>>;
+export declare function readTier2Verdicts(vaultRoot: string): Promise<Result<Tier2Verdict[], Error>>;
+export declare function latestUnitChangeTs(provenance: ProvenanceEntry[], unit: string): string | null;
+export declare function coveringVerdict(verdicts: Tier2Verdict[], input: {
+    artifact: string;
+    unit: string;
+    edgeClass: Tier1EdgeClass;
+    latestChangeTs: string;
+}): Tier2Verdict | null;
+export interface FieldChange {
+    before: unknown;
+    after: unknown;
+}
+export declare function accumulateFieldChanges(provenance: ProvenanceEntry[], unit: string, baseline: string): Record<string, FieldChange>;
+export declare function extractUsageSpan(artifactBody: string, unit: {
+    path: string;
+    title?: string;
+}): string | null;
+//# sourceMappingURL=tier2.d.ts.map

package/dist/curation/tier2.d.ts.map

@@ -0,0 +1 @@
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package/dist/curation/tier2.js

@@ -0,0 +1,182 @@
+// Tier 2 of tiered compatibility checking (#232) — the semantic residual,
+// as a QUEUE the server prepares and a VERDICT the server records. The
+// expensive judge itself is the CALLING AGENT: daftari has no LLM, by
+// design. The pattern is the same as earned edges (observeEdge) and
+// tension logging (vault_tension_log) — agents do the semantic work,
+// the server types it, stores it, and derives consequences.
+//
+// The queue IS #234's pending-unchecked staleness class, minus pairs a
+// recorded verdict already covers: declared and earned edges whose upstream
+// changed but whose compatibility structure cannot decide — exactly what
+// the through-line spec routes to "the expensive judges". Compiled edges
+// never queue (tier 1 decides them mechanically, and a semantic opinion
+// must not override mechanical certainty).
+//
+// Constrained input, per the #232 issue: not "do these two documents
+// conflict" but (unit, dependent, edge class, per-field before/after since
+// the edge's baseline, the dependent's usage span) — a specific claim
+// against a specific usage. Output is typed per the existing tension
+// taxonomy: a `broken` verdict names a LoggableTensionKind and is logged
+// as a real tension through addTension; `still-valid` records the
+// certified-compatible judgment.
+//
+// The verdict store (.daftari/tier2-verdicts.jsonl) is append-only local
+// state, git-ignored — the tension log is the durable, caller-visible
+// artifact of a break; the verdict log is what keeps the queue honest.
+// Verdicts, unlike tier-1 classes, MUST be stored: they are expensive LLM
+// judgments that cannot be recomputed at query time. Staleness protects
+// them from going stale: a verdict covers a pair only up to the unit
+// change it judged (judged_change_ts); a newer landed write to the unit
+// re-queues the pair automatically.
+import { mkdirSync } from "node:fs";
+import { appendFile, readFile } from "node:fs/promises";
+import { join } from "node:path";
+import { err, ok } from "../frontmatter/types.js";
+// Sentinel change timestamp for a unit with no provenance history at all: a
+// verdict on such a pair judges "the dependency as it stands", and any
+// later landed write to the unit (whose real timestamp is necessarily
+// greater) re-queues it.
+export const NO_CHANGE_TS = "1970-01-01T00:00:00.000Z";
+export const TIER2_VERDICT_KINDS = ["still-valid", "broken"];
+export function tier2VerdictsPath(vaultRoot) {
+    return join(vaultRoot, ".daftari", "tier2-verdicts.jsonl");
+}
+export async function recordTier2Verdict(vaultRoot, entry) {
+    const full = {
+        timestamp: entry.timestamp ?? new Date().toISOString(),
+        artifact: entry.artifact,
+        unit: entry.unit,
+        edge_class: entry.edge_class,
+        judged_change_ts: entry.judged_change_ts,
+        verdict: entry.verdict,
+        ...(entry.tension_kind ? { tension_kind: entry.tension_kind } : {}),
+        ...(entry.tension_id ? { tension_id: entry.tension_id } : {}),
+        reasoning: entry.reasoning,
+        agent: entry.agent,
+        ...(entry.principal ? { principal: entry.principal } : {}),
+        ...(entry.run_id ? { run_id: entry.run_id } : {}),
+    };
+    try {
+        mkdirSync(join(vaultRoot, ".daftari"), { recursive: true });
+        await appendFile(tier2VerdictsPath(vaultRoot), `${JSON.stringify(full)}\n`);
+        return ok(full);
+    }
+    catch (e) {
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot append tier-2 verdict: ${reason}`));
+    }
+}
+// Oldest first; missing log is empty; corrupt lines skipped.
+export async function readTier2Verdicts(vaultRoot) {
+    let raw;
+    try {
+        raw = await readFile(tier2VerdictsPath(vaultRoot), "utf-8");
+    }
+    catch (e) {
+        if (e.code === "ENOENT")
+            return ok([]);
+        const reason = e instanceof Error ? e.message : String(e);
+        return err(new Error(`cannot read tier-2 verdicts: ${reason}`));
+    }
+    const entries = [];
+    for (const line of raw.split("\n")) {
+        const trimmed = line.trim();
+        if (!trimmed)
+            continue;
+        try {
+            const parsed = JSON.parse(trimmed);
+            if (typeof parsed.artifact === "string" && typeof parsed.unit === "string") {
+                entries.push(parsed);
+            }
+        }
+        catch {
+            // Skip a corrupt line; the log is append-only and best-effort.
+        }
+    }
+    return ok(entries);
+}
+// The unit's latest landed content write — the change identity a verdict
+// judges. Null when the unit has no provenance at all.
+export function latestUnitChangeTs(provenance, unit) {
+    let latest = null;
+    for (const e of provenance) {
+        if (e.file !== unit || e.action === "rejected_stale")
+            continue;
+        if (latest === null || e.timestamp > latest)
+            latest = e.timestamp;
+    }
+    return latest;
+}
+// The verdict currently in force for a pair, if any: the newest recorded
+// verdict whose judged_change_ts is not older than the unit's latest landed
+// write. An older judgment (the unit changed again) covers nothing.
+export function coveringVerdict(verdicts, input) {
+    let found = null;
+    for (const v of verdicts) {
+        if (v.artifact !== input.artifact || v.unit !== input.unit)
+            continue;
+        if (v.edge_class !== input.edgeClass)
+            continue;
+        if (v.judged_change_ts < input.latestChangeTs)
+            continue; // stale judgment
+        if (found === null || v.timestamp > found.timestamp)
+            found = v;
+    }
+    return found;
+}
+export function accumulateFieldChanges(provenance, unit, baseline) {
+    const changes = {};
+    let bodyChanged = false;
+    for (const e of provenance) {
+        if (e.file !== unit || e.action === "rejected_stale" || e.timestamp <= baseline)
+            continue;
+        for (const [field, diff] of Object.entries(e.frontmatter_diff ?? {})) {
+            const existing = changes[field];
+            if (existing)
+                existing.after = diff.after;
+            else
+                changes[field] = { before: diff.before, after: diff.after };
+        }
+        if (e.body_changed ?? (e.action === "create" || e.action === "update" || e.action === "append"))
+            bodyChanged = true;
+    }
+    if (bodyChanged)
+        changes.body = { before: null, after: null };
+    return changes;
+}
+// Best-effort usage-span extraction: the lines of the dependent's body that
+// mention the unit (by path, basename, or title), each with one line of
+// context, capped. Null when nothing matches — the judge then reads the
+// dependent in full via vault_read.
+export function extractUsageSpan(artifactBody, unit) {
+    const needles = [unit.path, unit.path.split("/").pop() ?? "", unit.title ?? ""]
+        .map((n) => n.trim().toLowerCase())
+        .filter((n) => n.length > 2);
+    if (needles.length === 0)
+        return null;
+    const lines = artifactBody.split("\n");
+    const keep = new Set();
+    for (let i = 0; i < lines.length; i++) {
+        const lower = lines[i]?.toLowerCase() ?? "";
+        if (needles.some((n) => lower.includes(n))) {
+            for (const j of [i - 1, i, i + 1]) {
+                if (j >= 0 && j < lines.length)
+                    keep.add(j);
+            }
+        }
+    }
+    if (keep.size === 0)
+        return null;
+    const ordered = [...keep].sort((a, b) => a - b);
+    const parts = [];
+    let prev = -2;
+    for (const i of ordered) {
+        if (i > prev + 1 && parts.length > 0)
+            parts.push("…");
+        parts.push(lines[i] ?? "");
+        prev = i;
+    }
+    const span = parts.join("\n");
+    return span.length > 1200 ? `${span.slice(0, 1200)}…` : span;
+}
+//# sourceMappingURL=tier2.js.map

package/dist/curation/tier2.js.map

@@ -0,0 +1 @@
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package/dist/curation/vault-docs.d.ts

@@ -8,8 +8,12 @@ export interface LoadedDoc {
 export declare function loadDocuments(vaultRoot: string): Promise<Result<LoadedDoc[], Error>>;
 export declare function extractLinks(content: string): string[];
 export declare function resolveLink(rawTarget: string, fromPath: string, byPath: Set<string>, byBasename: Map<string, string>): string | null;
-export declare function buildPathIndexes(docs: LoadedDoc[]): {
+export declare function buildPathIndexes(docs: Pick<LoadedDoc, "path">[]): {
     byPath: Set<string>;
     byBasename: Map<string, string>;
 };
+export declare function outgoingLinkTargets(content: string, fromPath: string, indexes: {
+    byPath: Set<string>;
+    byBasename: Map<string, string>;
+}): string[];
 //# sourceMappingURL=vault-docs.d.ts.map

package/dist/curation/vault-docs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vault-docs.d.ts","sourceRoot":"","sources":["../../src/curation/vault-docs.ts"],"names":[],"mappings":"AAUA,OAAO,EAAE,KAAK,WAAW,EAAM,KAAK,MAAM,EAAE,KAAK,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAGnG,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,WAAW,CAAC;IACzB,OAAO,EAAE,MAAM,CAAC;IAOhB,UAAU,EAAE,gBAAgB,CAAC;CAC9B;AAKD,wBAAsB,aAAa,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,SAAS,EAAE,EAAE,KAAK,CAAC,CAAC,CAoB1F;AAID,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAiBtD;AAMD,wBAAgB,WAAW,CACzB,SAAS,EAAE,MAAM,EACjB,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,EACnB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC9B,MAAM,GAAG,IAAI,CAYf;AAMD,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,SAAS,EAAE,GAAG;IACnD,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACpB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACjC,CAQA"}
+{"version":3,"file":"vault-docs.d.ts","sourceRoot":"","sources":["../../src/curation/vault-docs.ts"],"names":[],"mappings":"AAUA,OAAO,EAAE,KAAK,WAAW,EAAM,KAAK,MAAM,EAAE,KAAK,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAGnG,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,WAAW,CAAC;IACzB,OAAO,EAAE,MAAM,CAAC;IAOhB,UAAU,EAAE,gBAAgB,CAAC;CAC9B;AAKD,wBAAsB,aAAa,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,SAAS,EAAE,EAAE,KAAK,CAAC,CAAC,CAoB1F;AAID,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAiBtD;AAMD,wBAAgB,WAAW,CACzB,SAAS,EAAE,MAAM,EACjB,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,EACnB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,GAC9B,MAAM,GAAG,IAAI,CAYf;AAMD,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,EAAE,MAAM,CAAC,EAAE,GAAG;IACjE,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IACpB,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACjC,CAQA;AAOD,wBAAgB,mBAAmB,CACjC,OAAO,EAAE,MAAM,EACf,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE;IAAE,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;IAAC,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;CAAE,GAChE,MAAM,EAAE,CAOV"}

package/dist/curation/vault-docs.js

@@ -21,7 +21,7 @@ export async function loadDocuments(vaultRoot) {
         const resolved = resolveVaultPath(vaultRoot, relPath);
         if (!resolved.ok)
             continue;
-        const file = await readFile(resolved.value);
+        const file = await readFile(resolved.value.absPath);
         if (!file.ok)
             continue;
         const parsed = parseDocument(file.value);
@@ -88,4 +88,18 @@ export function buildPathIndexes(docs) {
     }
     return { byPath, byBasename };
 }
+// The distinct resolved in-vault link targets of one document body, given the
+// known-path universe — the producer side of the materialized inbound-link
+// graph (#8, index-db.ts doc_links). Uses the SAME extraction and resolution
+// as lint's buildInboundMap, so the inline orphan / deprecated-still-linked
+// surfaces can never drift from the vault-global lint findings.
+export function outgoingLinkTargets(content, fromPath, indexes) {
+    const out = new Set();
+    for (const raw of extractLinks(content)) {
+        const target = resolveLink(raw, fromPath, indexes.byPath, indexes.byBasename);
+        if (target && target !== fromPath)
+            out.add(target);
+    }
+    return [...out];
+}
 //# sourceMappingURL=vault-docs.js.map

package/dist/curation/vault-docs.js.map

@@ -1 +1 @@
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package/dist/eval/generate.js

@@ -95,9 +95,13 @@ function extractQuestions(parsed) {
 // Validates each raw question and maps survivors to `Question` records with a
 // stable id and origin "generated". Reused for both the first call and the
 // top-up call. Rejects: bad tier, empty question/answer, empty or
-// out-of-subgraph expected_sources, and trivial yes/no answers.
+// out-of-subgraph expected_sources, trivial answers (see isTrivial), and
+// intra-call duplicates — two byte-identical questions from one generator
+// call hash to the same id, and both surviving would inflate
+// tier_counts_produced (#102).
 function validateAndMap(rawQuestions, validNodes) {
     const out = [];
+    const seen = new Set();
     for (const raw of rawQuestions) {
         if (typeof raw !== "object" || raw === null)
             continue;
@@ -117,11 +121,15 @@ function validateAndMap(rawQuestions, validNodes) {
             continue;
         if (!sources.every((s) => typeof s === "string" && validNodes.has(s)))
             continue;
-        if (isTrivial(question, answer))
+        if (isTrivial(tier, answer))
             continue;
         const expectedSources = sources;
+        const id = questionId(tier, question, expectedSources);
+        if (seen.has(id))
+            continue;
+        seen.add(id);
         out.push({
-            id: questionId(tier, question, expectedSources),
+            id,
             tier,
             question,
             expected_answer: answer,
@@ -188,9 +196,18 @@ function renderTopUpPrompt(sg, shortfall) {
         .join(" and ");
     return `Subgraph docs:\n\n${docs}\n\nYou previously produced too few of some tiers. Produce exactly ${wanted} questions, same rules. Do not produce any other tiers.`;
 }
-function isTrivial(_question, answer) {
+// Bare yes/no answers are trivial on every tier. The length floor is
+// tier-aware (#102): retrieval questions legitimately have short factual
+// answers ("3", "$5", "EU") that a flat < 3 cutoff silently discarded, while
+// cross_reference/contradiction answers that short cannot possibly relate two
+// documents and keep the stricter floor.
+function isTrivial(tier, answer) {
     const a = answer.trim().toLowerCase();
-    return a === "yes" || a === "no" || a.length < 3;
+    if (a === "yes" || a === "no")
+        return true;
+    if (tier === "retrieval")
+        return false;
+    return a.length < 3;
 }
 function questionId(tier, question, sources) {
     const h = createHash("sha256");

package/dist/eval/generate.js.map

@@ -1 +1 @@
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package/dist/eval/index.d.ts.map

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