cyrus-edge-worker 0.2.64-test.6 → 0.2.64

package/dist/ChatSessionHandler.d.ts

@@ -1,4 +1,5 @@
-import type { AgentRunnerConfig, CyrusAgentSession, IAgentRunner, ILogger } from "cyrus-core";
+import type { SdkPluginConfig } from "cyrus-claude-runner";
+import type { AgentRunnerConfig, CyrusAgentSession, IAgentRunner, ILogger, RepositoryConfig } from "cyrus-core";
 import type { ChatRepositoryProvider } from "./ChatRepositoryProvider.js";
 import type { RunnerConfigBuilder } from "./RunnerConfigBuilder.js";
 /**
@@ -67,6 +68,14 @@ export interface ChatSessionHandlerDeps {
      * no custom files load (native MCP servers still run as usual).
      */
     getPlatformMcpConfigOverrides?: () => readonly string[] | undefined;
+    /** Resolve managed skill plugins and scoped skill names for a chat session. */
+    resolveSkillsConfig?: (input: {
+        repository?: RepositoryConfig;
+        repositoryPaths: string[];
+    }) => Promise<{
+        plugins?: SdkPluginConfig[];
+        skills?: string[] | "all";
+    }>;
     onWebhookStart: () => void;
     onWebhookEnd: () => void;
     onStateChange: () => Promise<void>;
@@ -87,6 +96,7 @@ export declare class ChatSessionHandler<TEvent> {
     private logger;
     private pendingReplyEvents;
     private lastReplyEvent;
+    private pendingFollowups;
     constructor(adapter: ChatPlatformAdapter<TEvent>, deps: ChatSessionHandlerDeps, logger?: ILogger);
     /**
      * Main entry point — handles a single chat platform event.
@@ -130,6 +140,15 @@ export declare class ChatSessionHandler<TEvent> {
      * SDK emits a `result` message (signalling turn completion).
      */
     private handleAgentMessage;
+    private queuePendingFollowup;
+    private threadKeyForSession;
+    /**
+     * Re-dispatch any follow-ups queued for a thread while it was busy. Runs
+     * after the current turn settles (the runner has finalized), so each
+     * re-dispatched event takes the normal resume path. Any that still find the
+     * runner running re-queue themselves and are drained on the next completion.
+     */
+    private drainPendingFollowups;
     private enqueueReply;
     private drainReplies;
     /**

package/dist/ChatSessionHandler.d.ts.map

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package/dist/ChatSessionHandler.js

@@ -33,6 +33,12 @@ export class ChatSessionHandler {
     // remembers where to post that turn's reply (all events in a session share
     // one thread, so any recent event addresses it correctly).
     lastReplyEvent = new Map();
+    // Follow-up events that arrived while a turn was running and could not be
+    // streamed into it (e.g. the exec Codex backend, which has no mid-turn input
+    // channel). Keyed by threadKey. Drained when the running turn completes and
+    // re-dispatched as a fresh turn, so a follow-up is never silently dropped —
+    // honoring the "I'll pick up your new message once I'm done" promise.
+    pendingFollowups = new Map();
     constructor(adapter, deps, logger) {
         this.adapter = adapter;
         this.deps = deps;
@@ -70,8 +76,11 @@ export class ChatSessionHandler {
                         existingRunner.addStreamMessage(taskInstructions);
                     }
                     else {
-                        // Runner doesn't support streaming input or isn't in streaming mode — notify user
-                        this.logger.info(`Session ${existingSessionId} is still running, notifying user (thread ${threadKey})`);
+                        // Runner can't accept mid-turn input (e.g. exec Codex). Queue the
+                        // follow-up so it's delivered as a fresh turn once this one ends,
+                        // rather than dropped — then tell the user we'll pick it up.
+                        this.logger.info(`Session ${existingSessionId} is still running; queuing follow-up for after the turn (thread ${threadKey})`);
+                        this.queuePendingFollowup(threadKey, event);
                         await this.adapter.notifyBusy(event, threadKey);
                     }
                     return;
@@ -79,7 +88,10 @@ export class ChatSessionHandler {
                 if (existingSession && existingRunner) {
                     // Session exists but is not running — resume with --continue
                     this.logger.info(`Resuming completed ${this.adapter.platformName} session ${existingSessionId} (thread ${threadKey})`);
-                    const resumeSessionId = existingSession.claudeSessionId || existingSession.geminiSessionId;
+                    const resumeSessionId = existingSession.claudeSessionId ||
+                        existingSession.geminiSessionId ||
+                        existingSession.codexSessionId ||
+                        existingSession.cursorSessionId;
                     if (resumeSessionId) {
                         try {
                             await this.resumeSession(event, existingSession, existingSessionId, resumeSessionId, taskInstructions);
@@ -127,7 +139,7 @@ export class ChatSessionHandler {
             // Build the system prompt
             const systemPrompt = this.adapter.buildSystemPrompt(event);
             // Build runner config
-            const runnerConfig = this.buildRunnerConfig(session.workspace.path, sessionId, systemPrompt, sessionId);
+            const runnerConfig = await this.buildRunnerConfig(session.workspace.path, sessionId, systemPrompt, sessionId);
             const runner = this.deps.createRunner(runnerConfig);
             // Store the runner in the session manager
             this.sessionManager.addAgentRunner(sessionId, runner);
@@ -221,7 +233,7 @@ export class ChatSessionHandler {
      */
     async resumeSession(event, existingSession, sessionId, resumeSessionId, taskInstructions) {
         const systemPrompt = this.adapter.buildSystemPrompt(event);
-        const runnerConfig = this.buildRunnerConfig(existingSession.workspace.path, sessionId, systemPrompt, sessionId, resumeSessionId);
+        const runnerConfig = await this.buildRunnerConfig(existingSession.workspace.path, sessionId, systemPrompt, sessionId, resumeSessionId);
         const runner = this.deps.createRunner(runnerConfig);
         this.sessionManager.addAgentRunner(sessionId, runner);
         // Reply posting is driven by `result` messages on the runner's stream
@@ -276,8 +288,49 @@ export class ChatSessionHandler {
             else if (!replyEvent) {
                 this.logger.warn(`Received result for session ${sessionId} with no pending reply event — nothing to post`);
             }
+            // The turn is done — deliver any follow-ups that arrived while busy.
+            this.drainPendingFollowups(sessionId);
         }
     }
+    queuePendingFollowup(threadKey, event) {
+        const queue = this.pendingFollowups.get(threadKey) ?? [];
+        queue.push(event);
+        this.pendingFollowups.set(threadKey, queue);
+    }
+    threadKeyForSession(sessionId) {
+        for (const [threadKey, id] of this.threadSessions) {
+            if (id === sessionId) {
+                return threadKey;
+            }
+        }
+        return undefined;
+    }
+    /**
+     * Re-dispatch any follow-ups queued for a thread while it was busy. Runs
+     * after the current turn settles (the runner has finalized), so each
+     * re-dispatched event takes the normal resume path. Any that still find the
+     * runner running re-queue themselves and are drained on the next completion.
+     */
+    drainPendingFollowups(sessionId) {
+        const threadKey = this.threadKeyForSession(sessionId);
+        if (!threadKey) {
+            return;
+        }
+        const queue = this.pendingFollowups.get(threadKey);
+        if (!queue || queue.length === 0) {
+            return;
+        }
+        this.pendingFollowups.delete(threadKey);
+        // Defer so the just-finished runner has fully transitioned to not-running
+        // before the follow-up is re-evaluated (otherwise it would re-queue).
+        setImmediate(() => {
+            for (const event of queue) {
+                this.handleEvent(event).catch((error) => {
+                    this.logger.error(`Failed to re-dispatch queued ${this.adapter.platformName} follow-up (thread ${threadKey})`, error instanceof Error ? error : new Error(String(error)));
+                });
+            }
+        });
+    }
     enqueueReply(sessionId, event) {
         const queue = this.pendingReplyEvents.get(sessionId) ?? [];
         queue.push(event);
@@ -325,13 +378,18 @@ export class ChatSessionHandler {
      * Build a runner config for a chat session.
      * Delegates to RunnerConfigBuilder for config assembly.
      */
-    buildRunnerConfig(workspacePath, workspaceName, systemPrompt, sessionId, resumeSessionId) {
+    async buildRunnerConfig(workspacePath, workspaceName, systemPrompt, sessionId, resumeSessionId) {
         const sessionLogger = this.logger.withContext({
             sessionId,
             platform: this.adapter.platformName,
         });
         // Read live values from the provider at session-build time
         const provider = this.deps.chatRepositoryProvider;
+        const repository = provider.getDefaultRepository();
+        const repositoryPaths = provider.getRepositoryPaths();
+        const skillsConfig = this.deps.resolveSkillsConfig
+            ? await this.deps.resolveSkillsConfig({ repository, repositoryPaths })
+            : {};
         return this.deps.runnerConfigBuilder.buildChatConfig({
             workspacePath,
             workspaceName,
@@ -341,9 +399,11 @@ export class ChatSessionHandler {
             cyrusHome: this.deps.cyrusHome,
             platformName: this.adapter.platformName,
             linearWorkspaceId: provider.getDefaultLinearWorkspaceId(),
-            repository: provider.getDefaultRepository(),
-            repositoryPaths: provider.getRepositoryPaths(),
+            repository,
+            repositoryPaths,
             platformMcpConfigOverrides: this.deps.getPlatformMcpConfigOverrides?.(),
+            plugins: skillsConfig.plugins,
+            skills: skillsConfig.skills,
             logger: sessionLogger,
             onMessage: (message) => this.handleAgentMessage(sessionId, message),
             onError: (error) => this.deps.onClaudeError(error),

package/dist/ChatSessionHandler.js.map

@@ -1 +1 @@
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package/dist/EdgeWorker.d.ts

@@ -37,8 +37,6 @@ export declare class EdgeWorker extends EventEmitter {
     private persistenceManager;
     private sharedApplicationServer;
     private cyrusHome;
-    /** Per-org GitHub App installation tokens pushed by cyrus-hosted (lazy file-backed reads) */
-    private githubTokenStore;
     private globalSessionRegistry;
     private configPath?;
     /** @internal - Exposed for testing only */
@@ -151,11 +149,9 @@ export declare class EdgeWorker extends EventEmitter {
      */
     /**
      * Resolve a GitHub API token from (in priority order):
-     * 1. Org-matched installation token from the local token store (pushed by
-     *    cyrus-hosted via /api/update/github-tokens — multi-org support)
-     * 2. Forwarded installation token from CYHOST (cloud/proxy mode)
-     * 3. Self-minted installation token from GitHub App credentials (self-hosted)
-     * 4. Personal access token from GITHUB_TOKEN env var (fallback)
+     * 1. Forwarded installation token from CYHOST (cloud/proxy mode)
+     * 2. Self-minted installation token from GitHub App credentials (self-hosted)
+     * 3. Personal access token from GITHUB_TOKEN env var (fallback)
      */
     private resolveGitHubToken;
     private handleGitHubWebhook;

package/dist/EdgeWorker.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"EdgeWorker.d.ts","sourceRoot":"","sources":["../src/EdgeWorker.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAoB3C,OAAO,KAAK,EAQX,iBAAiB,EACjB,gBAAgB,EAMhB,KAAK,EAKL,gBAAgB,EAEhB,2BAA2B,EAQ3B,MAAM,YAAY,CAAC;AAqFpB,OAAO,EAEN,KAAK,iBAAiB,EACtB,MAAM,6BAA6B,CAAC;AAGrC,OAAO,EAAE,mBAAmB,EAAE,MAAM,0BAA0B,CAAC;AAmB/D,OAAO,EACN,gBAAgB,EAEhB,MAAM,uBAAuB,CAAC;AAM/B,OAAO,EAAE,uBAAuB,EAAE,MAAM,8BAA8B,CAAC;AASvE,OAAO,KAAK,EAAoB,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAGrE,MAAM,CAAC,OAAO,WAAW,UAAU;IAClC,EAAE,CAAC,CAAC,SAAS,MAAM,gBAAgB,EAClC,KAAK,EAAE,CAAC,EACR,QAAQ,EAAE,gBAAgB,CAAC,CAAC,CAAC,GAC3B,IAAI,CAAC;IACR,IAAI,CAAC,CAAC,SAAS,MAAM,gBAAgB,EACpC,KAAK,EAAE,CAAC,EACR,GAAG,IAAI,EAAE,UAAU,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,GACtC,OAAO,CAAC;CACX;AAMD;;;;;GAKG;AACH,qBAAa,UAAW,SAAQ,YAAY;IAC3C,OAAO,CAAC,MAAM,CAAmB;IACjC,OAAO,CAAC,YAAY,CAA4C;IAChE,OAAO,CAAC,mBAAmB,CAAsB;IACjD,OAAO,CAAC,aAAa,CAAyC;IAC9D,OAAO,CAAC,mBAAmB,CAAkC;IAC7D,OAAO,CAAC,qBAAqB,CAAkC;IAC/D,OAAO,CAAC,aAAa,CAAqC;IAC1D,OAAO,CAAC,aAAa,CAAgD;IACrE,OAAO,CAAC,oBAAoB,CAAqC;IACjE,OAAO,CAAC,oBAAoB,CAAqC;IACjE,OAAO,CAAC,sBAAsB,CAAuC;IACrE,OAAO,CAAC,oBAAoB,CAAqC;IACjE,OAAO,CAAC,mBAAmB,CAAoC;IAC/D,OAAO,CAAC,kBAAkB,CACpB;IACN,OAAO,CAAC,oBAAoB,CAAuB;IACnD,OAAO,CAAC,oBAAoB,CAAuB;IACnD,OAAO,CAAC,YAAY,CAA6B;IACjD,OAAO,CAAC,aAAa,CAA8B;IACnD,OAAO,CAAC,kBAAkB,CAAqB;IAC/C,OAAO,CAAC,uBAAuB,CAA0B;IACzD,OAAO,CAAC,SAAS,CAAS;IAC1B,OAAO,CAAC,qBAAqB,CAAwB;IACrD,OAAO,CAAC,UAAU,CAAC,CAAS;IAC5B,2CAA2C;IACpC,gBAAgB,EAAE,gBAAgB,CAAC;IAC1C,OAAO,CAAC,UAAU,CAAa;IAC/B,OAAO,CAAC,kBAAkB,CAAK;IAC/B,4EAA4E;IAC5E,OAAO,CAAC,sBAAsB,CAAyB;IACvD,qEAAqE;IACrE,OAAO,CAAC,iBAAiB,CAAoB;IAC7C,OAAO,CAAC,MAAM,CAAU;IAExB,OAAO,CAAC,iBAAiB,CAAoB;IAC7C,OAAO,CAAC,sBAAsB,CAAyB;IACvD,OAAO,CAAC,sBAAsB,CAAyB;IACvD,OAAO,CAAC,gBAAgB,CAAmB;IAC3C,OAAO,CAAC,mBAAmB,CAAsB;IACjD,OAAO,CAAC,cAAc,CAAiB;IACvC,OAAO,CAAC,aAAa,CAAgB;IACrC,OAAO,CAAC,aAAa,CAAgB;IACrC,OAAO,CAAC,qBAAqB,CAAwB;IACrD,OAAO,CAAC,oBAAoB,CAAuB;IACnD,OAAO,CAAC,QAAQ,CAAC,qBAAqB,CAAsB;IAC5D,OAAO,CAAC,uBAAuB,CAAS;IACxC,OAAO,CAAC,2BAA2B,CACY;IAC/C,OAAO,CAAC,qBAAqB,CAAuB;IACpD,qEAAqE;IACrE,OAAO,CAAC,kBAAkB,CAAqB;IAC/C,8EAA8E;IAC9E,OAAO,CAAC,WAAW,CAA4B;IAC/C,yFAAyF;IACzF,OAAO,CAAC,kBAAkB,CAEX;IACf,sFAAsF;IACtF,OAAO,CAAC,gBAAgB,CAAuB;IAC/C;;;;;;OAMG;IACH,OAAO,CAAC,kBAAkB,CAA6B;IACvD;;;;OAIG;IACH,OAAO,CAAC,wBAAwB,CAAqB;IAErD;;;;OAIG;IACH,OAAO,CAAC,cAAc,CAYlB;IAEJ;;;;;;;OAOG;IACH,OAAO,CAAC,MAAM,CAAC,oBAAoB;gBAavB,MAAM,EAAE,gBAAgB;IAySpC;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IA4F5B;;OAEG;YACW,oBAAoB;IAoJlC;;;OAGG;IACH,OAAO,CAAC,sBAAsB;IAY9B;;;OAGG;IACH,OAAO,CAAC,uBAAuB;IAa/B;;;OAGG;IACH,OAAO,CAAC,4BAA4B;IAqFpC;;;OAGG;IACH,OAAO,CAAC,4BAA4B;IA+CpC;;;;;;OAMG;IACH,OAAO,CAAC,6BAA6B;IAWrC;;;OAGG;IACH,OAAO,CAAC,2BAA2B;IAwHnC;;;;;OAKG;IACH;;;;;OAKG;YACW,kBAAkB;YAiBlB,mBAAmB;IAkXjC;;;;OAIG;YACW,uBAAuB;IAgGrC;;;OAGG;IACH,OAAO,CAAC,yBAAyB;IAgBjC;;;;OAIG;YACW,iBAAiB;IAsD/B;;;OAGG;YACW,qBAAqB;IAqDnC;;OAEG;IACH,OAAO,CAAC,uBAAuB;IA8B/B;;OAEG;IACH,OAAO,CAAC,oCAAoC;IA2C5C;;OAEG;YACW,eAAe;IAiF7B;;;OAGG;YACW,mBAAmB;IAiRjC;;;OAGG;IACH,OAAO,CAAC,yBAAyB;IAejC;;;OAGG;YACW,qBAAqB;IAoDnC;;OAEG;IACH,OAAO,CAAC,uBAAuB;IA+B/B;;OAEG;IACH,OAAO,CAAC,oCAAoC;IA2C5C;;OAEG;YACW,eAAe;IAiF7B;;;OAGG;IACH,OAAO,CAAC,aAAa;IAsBrB;;;;OAIG;IACG,qBAAqB,CAAC,KAAK,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC;IAOpE;;;OAGG;IACH,0BAA0B,IAAI,uBAAuB;IAIrD;;OAEG;IACH,eAAe,IAAI,KAAK,CAAC;QAAE,SAAS,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC;IAKlE;;;;OAIG;IACH,sBAAsB,CAAC,SAAS,EAAE,MAAM,GAAG;QAC1C,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,EAAE,OAAO,CAAC;QACnB,YAAY,EAAE,MAAM,CAAC;KACrB,GAAG,IAAI;IA6BR;;OAEG;IACG,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAoD3B;;;;;;OAMG;YACW,yBAAyB;IAwDvC;;;;;OAKG;IACH,OAAO,CAAC,wBAAwB;IAgDhC;;;OAGG;IACH,OAAO,CAAC,uBAAuB;IAuB/B;;OAEG;IACH,aAAa,CAAC,UAAU,EAAE,MAAM,GAAG,IAAI;IAKvC;;;;OAIG;YACW,yBAAyB;IAgGvC;;;;;;;;OAQG;IACH,OAAO,CAAC,2BAA2B;IA4CnC;;OAEG;YACW,kBAAkB;IAmChC;;OAEG;YACW,0BAA0B;IAsDxC;;OAEG;YACW,yBAAyB;IAiFvC;;OAEG;IACH,OAAO,CAAC,WAAW;IAKnB;;;OAGG;IACH,OAAO,CAAC,qBAAqB;IAO7B;;OAEG;IACH,OAAO,CAAC,mBAAmB;IAK3B;;OAEG;YACW,aAAa;IAkF3B;;;;;;OAMG;YACW,aAAa;IA8C3B;;;;;OAKG;YACW,yBAAyB;IAWvC;;;;;OAKG;YACW,uBAAuB;IAWrC;;;;;OAKG;YACW,uBAAuB;IAWrC;;;;;OAKG;YACW,0BAA0B;IAWxC;;;;;OAKG;YACW,qBAAqB;IASnC;;;OAGG;YACW,6BAA6B;IA0D3C;;OAEG;YACW,4BAA4B;IA8D1C;;;;;;;;;;;;;;;;;OAiBG;YACW,wBAAwB;IAgNtC;;;;;;OAMG;IACH;;;;OAIG;YACW,0BAA0B;IAsFxC;;;OAGG;YACW,sBAAsB;IAmGpC;;;OAGG;YACW,2BAA2B;IA2DzC,OAAO,CAAC,sBAAsB;IAoB9B;;OAEG;IACH,OAAO,CAAC,2BAA2B;IAMnC;;OAEG;IACH,OAAO,CAAC,sBAAsB;IAM9B;;OAEG;IACH,OAAO,CAAC,0BAA0B;IAQlC;;;;;;;;OAQG;YACW,uBAAuB;IAwKrC;;;;;OAKG;YACW,gCAAgC;IAoJ9C;;;;;;;;;;;;;OAaG;YACW,qBAAqB;IAkOnC;;;;;;;OAOG;YACW,gBAAgB;IA8E9B;;;;;;;OAOG;YACW,iCAAiC;IA2D/C;;;;;OAKG;YACW,6BAA6B;IA0C3C;;;OAGG;YACW,4BAA4B;IA6M1C;;;;;;;;OAQG;YACW,+BAA+B;IA6I7C;;;;OAIG;YACW,qBAAqB;IA8BnC;;OAEG;YACW,mBAAmB;IAQjC;;;OAGG;YACW,iBAAiB;IAiB/B;;OAEG;YACW,gBAAgB;IAI9B;;;;;;;;;;;;;;OAcG;IACH,OAAO,CAAC,wBAAwB;IAqBhC;;;;;;OAMG;IACH,OAAO,CAAC,qBAAqB;IAgB7B;;;OAGG;IACH,OAAO,CAAC,wBAAwB;IAIhC;;;OAGG;IACH,OAAO,CAAC,gCAAgC;IA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package/dist/EdgeWorker.js

@@ -8,8 +8,8 @@ import { LinearClient } from "@linear/sdk";
 import { buildBaseSessionEnv, ClaudeRunner, HttpSessionStore, normalizeMcpHttpTransport, } from "cyrus-claude-runner";
 import { getCyrusAppUrl } from "cyrus-cloudflare-tunnel-client";
 import { CodexRunner } from "cyrus-codex-runner";
-import { ConfigUpdater, ensureGhTokenResolver, ensureGitHubCredentialHelper, } from "cyrus-config-updater";
-import { CLIIssueTrackerService, CLIRPCServer, createLogger, DEFAULT_PROXY_URL, GitHubTokenStore, isAgentSessionCreatedWebhook, isAgentSessionPromptedWebhook, isContentUpdateMessage, isIssueAssignedWebhook, isIssueCommentMentionWebhook, isIssueDeletedWebhook, isIssueNewCommentWebhook, isIssueStateChangeMessage, isIssueStateChangeWebhook, isIssueStateIdUpdateWebhook, isIssueTitleOrDescriptionUpdateWebhook, isIssueUnassignedWebhook, isSessionStartMessage, isStopSignalMessage, isUnassignMessage, isUserPromptMessage, PersistenceManager, requireLinearWorkspaceId, resolvePath, WebhookIpValidator, } from "cyrus-core";
+import { ConfigUpdater } from "cyrus-config-updater";
+import { CLIIssueTrackerService, CLIRPCServer, createLogger, DEFAULT_PROXY_URL, isAgentSessionCreatedWebhook, isAgentSessionPromptedWebhook, isContentUpdateMessage, isIssueAssignedWebhook, isIssueCommentMentionWebhook, isIssueDeletedWebhook, isIssueNewCommentWebhook, isIssueStateChangeMessage, isIssueStateChangeWebhook, isIssueStateIdUpdateWebhook, isIssueTitleOrDescriptionUpdateWebhook, isIssueUnassignedWebhook, isSessionStartMessage, isStopSignalMessage, isUnassignMessage, isUserPromptMessage, PersistenceManager, requireLinearWorkspaceId, resolvePath, WebhookIpValidator, } from "cyrus-core";
 import { CursorRunner } from "cyrus-cursor-runner";
 import { GeminiRunner } from "cyrus-gemini-runner";
 import { extractCommentAuthor, extractCommentBody, extractCommentId, extractCommentUrl, extractPRBaseBranchRef, extractPRBranchRef, extractPRNumber, extractPRTitle, extractRepoFullName, extractRepoName, extractRepoOwner, extractSessionKey, GitHubAppTokenProvider, GitHubCommentService, GitHubEventTransport, isCommentOnPullRequest, isIssueCommentPayload, isPullRequestReviewCommentPayload, isPullRequestReviewPayload, stripMention, } from "cyrus-github-event-transport";
@@ -32,7 +32,7 @@ import { GlobalSessionRegistry } from "./GlobalSessionRegistry.js";
 import { McpConfigService } from "./McpConfigService.js";
 import { PromptBuilder } from "./PromptBuilder.js";
 import { RepositoryRouter, } from "./RepositoryRouter.js";
-import { RunnerConfigBuilder } from "./RunnerConfigBuilder.js";
+import { RunnerConfigBuilder, resolveIssueMcpConfigPath, } from "./RunnerConfigBuilder.js";
 import { RunnerSelectionService } from "./RunnerSelectionService.js";
 import { SharedApplicationServer } from "./SharedApplicationServer.js";
 import { SkillsPluginResolver, } from "./SkillsPluginResolver.js";
@@ -68,8 +68,6 @@ export class EdgeWorker extends EventEmitter {
     persistenceManager;
     sharedApplicationServer;
     cyrusHome;
-    /** Per-org GitHub App installation tokens pushed by cyrus-hosted (lazy file-backed reads) */
-    githubTokenStore;
     globalSessionRegistry; // Centralized session storage across all repositories
     configPath; // Path to config.json file
     /** @internal - Exposed for testing only */
@@ -145,7 +143,6 @@ export class EdgeWorker extends EventEmitter {
         super();
         this.config = EdgeWorker.normalizeConfigPaths(config);
         this.cyrusHome = config.cyrusHome;
-        this.githubTokenStore = new GitHubTokenStore(this.cyrusHome);
         this.logger = createLogger({ component: "EdgeWorker" });
         this.persistenceManager = new PersistenceManager(join(this.cyrusHome, "state"));
         // Mirror Claude SDK session transcripts to the hosted control plane
@@ -343,20 +340,6 @@ export class EdgeWorker extends EventEmitter {
      * Start the edge worker
      */
     async start() {
-        // If cyrus-hosted has pushed per-org GitHub App tokens previously, make
-        // sure the git credential helper and the per-invocation gh token
-        // resolver are wired up (idempotent). Covers the case where the
-        // process restarted after the helper config was wiped.
-        if (existsSync(this.githubTokenStore.filePath)) {
-            try {
-                ensureGitHubCredentialHelper(this.cyrusHome);
-                ensureGhTokenResolver(this.cyrusHome);
-                this.logger.info("✅ GitHub auth scripts configured from existing token store");
-            }
-            catch (error) {
-                this.logger.warn("Failed to configure GitHub auth scripts on startup (non-fatal):", error instanceof Error ? error : new Error(String(error)));
-            }
-        }
         // Deploy default skills to cyrusHome if not already present (one-time setup)
         await this.defaultSkillsDeployer.ensureDeployed();
         // Scaffold user skills plugin manifest if needed (one-time setup)
@@ -712,6 +695,14 @@ export class EdgeWorker extends EventEmitter {
             // Live read so hot-reloaded config (`setConfig`) picks up new
             // per-platform MCP paths without rebuilding the handler.
             getPlatformMcpConfigOverrides: () => this.config.slackMcpConfigs,
+            resolveSkillsConfig: async ({ repository, repositoryPaths }) => {
+                const plugins = await this.skillsPluginResolver.resolve();
+                const skills = await this.skillsPluginResolver.discoverSkillNames(plugins, {
+                    repositoryId: repository?.id,
+                    repoPaths: repositoryPaths,
+                });
+                return { plugins, skills };
+            },
             onWebhookStart: () => {
                 this.activeWebhookCount++;
             },
@@ -764,18 +755,11 @@ export class EdgeWorker extends EventEmitter {
      */
     /**
      * Resolve a GitHub API token from (in priority order):
-     * 1. Org-matched installation token from the local token store (pushed by
-     *    cyrus-hosted via /api/update/github-tokens — multi-org support)
-     * 2. Forwarded installation token from CYHOST (cloud/proxy mode)
-     * 3. Self-minted installation token from GitHub App credentials (self-hosted)
-     * 4. Personal access token from GITHUB_TOKEN env var (fallback)
-     */
-    async resolveGitHubToken(event, repository) {
-        if (repository?.githubUrl) {
-            const storedToken = this.githubTokenStore.getTokenForRepoUrl(repository.githubUrl);
-            if (storedToken)
-                return storedToken;
-        }
+     * 1. Forwarded installation token from CYHOST (cloud/proxy mode)
+     * 2. Self-minted installation token from GitHub App credentials (self-hosted)
+     * 3. Personal access token from GITHUB_TOKEN env var (fallback)
+     */
+    async resolveGitHubToken(event) {
         if (event.installationToken)
             return event.installationToken;
         if (this.gitHubAppTokenProvider) {
@@ -834,7 +818,7 @@ export class EdgeWorker extends EventEmitter {
             }
             this.logger.info(`Processing GitHub webhook: ${repoFullName}#${prNumber} by @${commentAuthor}${isPullRequestReview ? " (pull_request_review)" : ""}`);
             // Add "eyes" reaction to acknowledge receipt (not for pull_request_review — we post a comment instead)
-            const reactionToken = await this.resolveGitHubToken(event, this.findRepositoryByGitHubUrl(repoFullName) ?? undefined);
+            const reactionToken = await this.resolveGitHubToken(event);
             if (reactionToken && !isPullRequestReview) {
                 const commentId = extractCommentId(event);
                 if (commentId) {
@@ -1096,9 +1080,16 @@ Your base branch \`${branchName}\` has received ${commitCount} new commit(s). Co
             if (isRunning &&
                 existingRunner?.supportsStreamingInput &&
                 existingRunner.addStreamMessage) {
-                existingRunner.addStreamMessage(notification);
-                this.logger.debug(`[base-branch-update] Streamed notification to session ${session.id} for branch ${branchName}`);
-                break;
+                // Best-effort notification; a steer-only backend may reject it if no
+                // turn is active. Don't let that throw out of the update handler.
+                try {
+                    existingRunner.addStreamMessage(notification);
+                    this.logger.debug(`[base-branch-update] Streamed notification to session ${session.id} for branch ${branchName}`);
+                    break;
+                }
+                catch (error) {
+                    this.logger.debug(`[base-branch-update] Stream rejected for session ${session.id}; skipping`, { error: error instanceof Error ? error.message : String(error) });
+                }
             }
         }
     }
@@ -1123,7 +1114,7 @@ Your base branch \`${branchName}\` has received ${commitCount} new commit(s). Co
      * For issue_comment events, the branch refs are not in the payload
      * and must be fetched from the GitHub API.
      */
-    async fetchPRBranchRefs(event, repository) {
+    async fetchPRBranchRefs(event, _repository) {
         if (!isIssueCommentPayload(event.payload))
             return null;
         const prUrl = event.payload.issue.pull_request?.url;
@@ -1137,8 +1128,8 @@ Your base branch \`${branchName}\` has received ${commitCount} new commit(s). Co
                 Accept: "application/vnd.github+json",
                 "X-GitHub-Api-Version": "2022-11-28",
             };
-            // Resolve GitHub token (org-matched store token > installation token > App token > PAT)
-            const token = await this.resolveGitHubToken(event, repository);
+            // Resolve GitHub token (installation token > App token > PAT)
+            const token = await this.resolveGitHubToken(event);
             if (token) {
                 headers.Authorization = `Bearer ${token}`;
             }
@@ -1275,7 +1266,7 @@ ${taskSection}`;
     /**
      * Post a reply back to the GitHub PR comment after the session completes.
      */
-    async postGitHubReply(event, runner, repository) {
+    async postGitHubReply(event, runner, _repository) {
         try {
             // Get the last assistant message from the runner as the summary
             const messages = runner.getMessages();
@@ -1300,8 +1291,8 @@ ${taskSection}`;
                 this.logger.warn("Cannot post GitHub reply: no PR number");
                 return;
             }
-            // Resolve GitHub token (org-matched store token > installation token > App token > PAT)
-            const token = await this.resolveGitHubToken(event, repository);
+            // Resolve GitHub token (installation token > App token > PAT)
+            const token = await this.resolveGitHubToken(event);
             if (!token) {
                 this.logger.warn("Cannot post GitHub reply: no installation token or GITHUB_TOKEN configured");
                 this.logger.debug(`Would have posted reply to ${owner}/${repo}#${prNumber} (comment ${commentId}): ${summary}`);
@@ -2600,10 +2591,16 @@ ${taskSection}`;
             if (isRunning &&
                 existingRunner?.supportsStreamingInput &&
                 existingRunner.addStreamMessage) {
-                existingRunner.addStreamMessage(fullPrompt);
-                delivered = true;
-                this.logger.debug(`[issue-update] Streamed update to session ${sessionId} (key=${webhookKey}, changed=[${changedFields.join(", ")}])`);
-                break;
+                // Best-effort; a steer-only backend may reject when no turn is active.
+                try {
+                    existingRunner.addStreamMessage(fullPrompt);
+                    delivered = true;
+                    this.logger.debug(`[issue-update] Streamed update to session ${sessionId} (key=${webhookKey}, changed=[${changedFields.join(", ")}])`);
+                    break;
+                }
+                catch (error) {
+                    this.logger.debug(`[issue-update] Stream rejected for session ${sessionId}; skipping (key=${webhookKey})`, { error: error instanceof Error ? error.message : String(error) });
+                }
             }
             else if (isRunning) {
                 this.logger.debug(`[issue-update] Session ${sessionId} is running but doesn't support streaming input, skipping (key=${webhookKey})`);
@@ -4436,14 +4433,6 @@ ${input.userComment}
                 : this.config.githubMcpConfigs,
             linearWorkspaceId,
             cyrusHome: this.cyrusHome,
-            // Org-matched GitHub App installation token (pushed by cyrus-hosted):
-            // exposed to the session as GH_TOKEN / CYRUS_GH_TOKEN so `gh` and
-            // other tools authenticate against this repo's org. Undefined when
-            // no token store entry matches — zero behavior change for self-host
-            // users without the token file.
-            githubToken: repository.githubUrl
-                ? this.githubTokenStore.getTokenForRepoUrl(repository.githubUrl)
-                : undefined,
             logger: log,
             plugins,
             skills: allowedSkillNames,
@@ -4646,15 +4635,7 @@ ${input.userComment}
                 // mcpConfigPath stays scoped to that repo, otherwise the
                 // team-level `linearMcpConfigs` list applies. Same coupling
                 // the live `buildIssueConfig` path uses.
-                const repoHasAllowedToolsOverride = Array.isArray(repo.allowedTools) && repo.allowedTools.length > 0;
-                const mcpConfigPath = repoHasAllowedToolsOverride
-                    ? this.mcpConfigService.buildMergedMcpConfigPath(repo)
-                    : this.config.linearMcpConfigs &&
-                        this.config.linearMcpConfigs.length > 0
-                        ? this.config.linearMcpConfigs.length === 1
-                            ? this.config.linearMcpConfigs[0]
-                            : [...this.config.linearMcpConfigs]
-                        : undefined;
+                const mcpConfigPath = resolveIssueMcpConfigPath(repo, this.config.linearMcpConfigs, this.mcpConfigService.buildMergedMcpConfigPath.bind(this.mcpConfigService));
                 let mcpServers = { ...mcpConfig };
                 if (mcpConfigPath) {
                     const paths = Array.isArray(mcpConfigPath)
@@ -4842,10 +4823,20 @@ ${input.userComment}
             if (attachmentManifest) {
                 fullPrompt = `${promptBody}\n\n${attachmentManifest}`;
             }
-            existingRunner.addStreamMessage(fullPrompt);
-            return true; // Message added to stream
+            // `addStreamMessage` can reject the message if the turn ended in the
+            // race window between "still running" and "turn finished" (e.g. the
+            // Codex app-server backend, which only steers an active turn). Fall
+            // through to the resume path so the comment is never dropped. Claude's
+            // streaming input never throws here, so this is a no-op for Claude.
+            try {
+                existingRunner.addStreamMessage(fullPrompt);
+                return true; // Message added to stream
+            }
+            catch (error) {
+                log.warn(`Streaming message rejected for ${sessionId}; falling back to resume (${logContext})`, { error: error instanceof Error ? error.message : String(error) });
+            }
         }
-        // Not streaming - resume/start session
+        // Not streaming (or streaming was rejected) - resume/start session
         log.debug(`Resuming Claude session for ${sessionId} (${logContext})`);
         await this.resumeAgentSession(session, repository, sessionId, agentSessionManager, promptBody, attachmentManifest, isNewSession, additionalAllowedDirs, linearWorkspaceId, undefined, // maxTurns
         commentAuthor, commentTimestamp);
@@ -4880,8 +4871,16 @@ ${input.userComment}
             if (attachmentManifest) {
                 fullPrompt = `${promptBody}\n\n${attachmentManifest}`;
             }
-            existingRunner.addStreamMessage(fullPrompt);
-            return;
+            // See handlePromptWithStreamingCheck: a steer-only backend can reject
+            // the message if the turn just ended. Fall through to a fresh resume
+            // turn rather than dropping the comment. No-op for Claude.
+            try {
+                existingRunner.addStreamMessage(fullPrompt);
+                return;
+            }
+            catch (error) {
+                log.warn(`Streaming message rejected for ${sessionId}; falling back to resume`, { error: error instanceof Error ? error.message : String(error) });
+            }
         }
         // Stop existing runner if it's not running
         if (existingRunner) {