curtain-web-api 1.0.14 → 1.0.16

package/build/classes/curtain-api.d.ts

@@ -19,8 +19,8 @@ export declare class CurtainWebAPI {
     ORCIDLogin(authorizationCode: string, redirectURI: string): Promise<User>;
     checkIfRefreshTokenExpired(): boolean;
     deleteCurtainLink(curtainLinkID: string): Promise<import("axios").AxiosResponse<any, any>>;
-    putSettings(settings: any, enable?: boolean, description?: string, sessionType?: string): Promise<import("axios").AxiosResponse<any, any>>;
-    postSettings(id: string, token: string): Promise<import("axios").AxiosResponse<any, any>>;
+    putSettings(settings: any, enable?: boolean, description?: string, sessionType?: string, onUploadProgress?: any): Promise<import("axios").AxiosResponse<any, any>>;
+    postSettings(id: string, token: string, onDownloadProgress?: any): Promise<import("axios").AxiosResponse<any, any>>;
     getPrideData(accession: string): Promise<import("axios").AxiosResponse<any, any>>;
     generateTemporarySession(linkId: string, lifetime: number): Promise<import("axios").AxiosResponse<any, any>>;
     updateSession(sessionData: any, linkId: string): Promise<import("axios").AxiosResponse<any, any>>;
@@ -30,10 +30,11 @@ export declare class CurtainWebAPI {
     addOwner(linkId: string, owner: string): Promise<import("axios").AxiosResponse<any, any>>;
     getCurtainLinks(username: string, sessionDescription?: string, offset?: number, sessionType?: string): Promise<import("axios").AxiosResponse<any, any>>;
     getSiteProperties(): Promise<import("axios").AxiosResponse<any, any>>;
-    saveDataFilterList(name: string, data: string): Promise<import("axios").AxiosResponse<any, any>>;
+    saveDataFilterList(name: string, data: string, category?: string): Promise<import("axios").AxiosResponse<any, any>>;
     getDataFilterListByID(id: number): Promise<import("axios").AxiosResponse<any, any>>;
-    getDataFilterList(categoryName?: string, searchTerm?: string, limit?: number): Promise<import("axios").AxiosResponse<any, any>>;
+    getDataFilterList(title?: string, searchTerm?: string, category?: string, limit?: number): Promise<import("axios").AxiosResponse<any, any>>;
     deleteDataFilterList(id: number): Promise<import("axios").AxiosResponse<any, any>>;
     downloadStats(): Promise<import("axios").AxiosResponse<any, any>>;
-    postInteractomeAtlasProxy(data: any): Promise<import("axios").AxiosResponse<any, any>>;
+    postInteractomeAtlasProxy(genes: string[], filterParameter: string): Promise<import("axios").AxiosResponse<any, any>>;
+    postPrimitiveStatsTest(data: any, type?: string): Promise<import("axios").AxiosResponse<any, any>>;
 }

package/build/classes/curtain-api.js

@@ -204,7 +204,7 @@ class CurtainWebAPI {
             return response;
         });
     }
-    putSettings(settings, enable = true, description = "", sessionType = "TP") {
+    putSettings(settings, enable = true, description = "", sessionType = "TP", onUploadProgress = undefined) {
         let form = new FormData();
         form.append("file", new Blob([JSON.stringify(settings, exports.replacer)], { type: 'text/json' }), "curtain-settings.json");
         if (enable) {
@@ -218,13 +218,23 @@ class CurtainWebAPI {
         let headers = new axios_1.AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "multipart/form-data";
+        if (onUploadProgress !== undefined) {
+            return this.axiosInstance.post(this.baseURL + "curtain/", form, { headers: headers, responseType: "json", onUploadProgress: onUploadProgress }).then((response) => {
+                return response;
+            });
+        }
         return this.axiosInstance.post(this.baseURL + "curtain/", form, { headers: headers, responseType: "json" }).then((response) => {
             return response;
         });
     }
-    postSettings(id, token) {
+    postSettings(id, token, onDownloadProgress = undefined) {
         let headers = new axios_1.AxiosHeaders();
         headers["Accept"] = "application/json";
+        if (onDownloadProgress !== undefined) {
+            return this.axiosInstance.get(this.baseURL + "curtain/" + id + "/download/token=" + token + "/", { responseType: "json", onDownloadProgress: onDownloadProgress }).then((response) => {
+                return response;
+            });
+        }
         return this.axiosInstance.get(this.baseURL + "curtain/" + id + "/download/token=" + token + "/", { responseType: "json" }).then((response) => {
             return response;
         });
@@ -316,11 +326,11 @@ class CurtainWebAPI {
             return response;
         });
     }
-    saveDataFilterList(name, data) {
+    saveDataFilterList(name, data, category = "") {
         let headers = new axios_1.AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "application/json";
-        return this.axiosInstance.post(this.baseURL + "data_filter_list/", { name: name, data: data }, { headers: headers, responseType: "json" }).then((response) => {
+        return this.axiosInstance.post(this.baseURL + "data_filter_list/", { name: name, data: data, category: category }, { headers: headers, responseType: "json" }).then((response) => {
             return response;
         });
     }
@@ -331,14 +341,17 @@ class CurtainWebAPI {
             return response;
         });
     }
-    getDataFilterList(categoryName = "", searchTerm = "", limit = 99999999) {
+    getDataFilterList(title = "", searchTerm = "", category = "", limit = 99999999) {
         let params = new URLSearchParams();
-        if (categoryName != "") {
-            params.append("name", categoryName);
+        if (title != "") {
+            params.append("name", title);
         }
         if (searchTerm != "" && searchTerm != undefined) {
             params.append("data", searchTerm);
         }
+        if (category != "" && category != undefined) {
+            params.append("category", category);
+        }
         params.append("limit", limit.toString());
         return this.axiosInstance.get(this.baseURL + "data_filter_list/", { responseType: "json", params });
     }
@@ -356,11 +369,29 @@ class CurtainWebAPI {
             return response;
         });
     }
-    postInteractomeAtlasProxy(data) {
+    postInteractomeAtlasProxy(genes, filterParameter) {
+        let params = new URLSearchParams();
+        params.append("query_interactors", "query");
+        params.append("query_id_array", genes.join("%2C"));
+        params.append("search_term_parameter", genes.join("%2C"));
+        params.append("filter_parameter", filterParameter);
+        let searchTermArray = [];
+        for (const g of genes) {
+            searchTermArray.push("search_term_array%5B%5D=" + g);
+        }
+        const data = "http://www.interactome-atlas.org/search_results_interactions?" + params.toString() + "&" + searchTermArray.join("&");
+        let headers = new axios_1.AxiosHeaders();
+        headers["Accept"] = "application/json";
+        headers["Content-Type"] = "application/json";
+        return axios_1.default.post(this.baseURL + "interactome-atlas-proxy/", { link: data }, { headers: headers, responseType: "json" }).then((response) => {
+            return response;
+        });
+    }
+    postPrimitiveStatsTest(data, type = "t-test") {
         let headers = new axios_1.AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "application/json";
-        return axios_1.default.post(this.baseURL + "interactome-atlas-proxy/", data, { headers: headers, responseType: "json" }).then((response) => {
+        return axios_1.default.post(this.baseURL + "primitive-stats-test/", { data, type }, { headers: headers, responseType: "json" }).then((response) => {
             return response;
         });
     }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "curtain-web-api",
-  "version": "1.0.14",
+  "version": "1.0.16",
   "description": "",
   "main": "./build/index.js",
   "types": "./build/index.d.ts",

package/src/classes/curtain-api.ts

@@ -192,7 +192,7 @@ export class CurtainWebAPI {
     }
 
 
-    putSettings(settings: any, enable: boolean = true, description: string = "", sessionType: string = "TP") {
+    putSettings(settings: any, enable: boolean = true, description: string = "", sessionType: string = "TP", onUploadProgress: any = undefined) {
         let form: FormData = new FormData();
         form.append("file", new Blob([JSON.stringify(settings, replacer)], {type: 'text/json'}), "curtain-settings.json")
         if (enable) {
@@ -205,14 +205,24 @@ export class CurtainWebAPI {
         let headers = new AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "multipart/form-data";
+        if (onUploadProgress !== undefined) {
+            return this.axiosInstance.post(this.baseURL + "curtain/", form, {headers: headers, responseType:"json", onUploadProgress: onUploadProgress}).then((response) => {
+                return response;
+            });
+        }
         return this.axiosInstance.post(this.baseURL + "curtain/", form, {headers: headers, responseType:"json"}).then((response) => {
             return response;
         });
     }
 
-    postSettings(id: string, token: string) {
+    postSettings(id: string, token: string, onDownloadProgress: any = undefined) {
         let headers = new AxiosHeaders();
         headers["Accept"] = "application/json";
+        if (onDownloadProgress !== undefined) {
+            return this.axiosInstance.get(this.baseURL + "curtain/" + id + "/download/token=" + token + "/", {responseType:"json", onDownloadProgress: onDownloadProgress}).then((response) => {
+                return response;
+            })
+        }
         return this.axiosInstance.get(this.baseURL + "curtain/" + id + "/download/token=" + token + "/", {responseType:"json"}).then((response) => {
             return response;
         })
@@ -318,11 +328,11 @@ export class CurtainWebAPI {
         });
     }
 
-    saveDataFilterList(name: string, data: string) {
+    saveDataFilterList(name: string, data: string, category: string = "") {
         let headers = new AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "application/json";
-        return this.axiosInstance.post(this.baseURL + "data_filter_list/", {name: name, data: data}, {headers: headers, responseType:"json"}).then((response) => {
+        return this.axiosInstance.post(this.baseURL + "data_filter_list/", {name: name, data: data, category: category}, {headers: headers, responseType:"json"}).then((response) => {
             return response;
         });
     }
@@ -335,14 +345,17 @@ export class CurtainWebAPI {
         });
     }
 
-    getDataFilterList(categoryName: string = "", searchTerm: string = "", limit: number = 99999999) {
+    getDataFilterList(title: string = "", searchTerm: string = "", category: string = "", limit: number = 99999999) {
         let params = new URLSearchParams();
-        if (categoryName != "") {
-            params.append("name", categoryName)
+        if (title != "") {
+            params.append("name", title)
         }
         if (searchTerm != "" && searchTerm != undefined) {
             params.append("data", searchTerm)
         }
+        if (category != "" && category != undefined) {
+            params.append("category", category)
+        }
 
         params.append("limit", limit.toString())
         return this.axiosInstance.get(this.baseURL + "data_filter_list/", {responseType:"json", params})
@@ -364,11 +377,30 @@ export class CurtainWebAPI {
         });
     }
 
-    postInteractomeAtlasProxy(data: any) {
+    postInteractomeAtlasProxy(genes: string[], filterParameter: string) {
+        let params = new URLSearchParams();
+        params.append("query_interactors", "query");
+        params.append("query_id_array", genes.join("%2C"));
+        params.append("search_term_parameter", genes.join("%2C"));
+        params.append("filter_parameter", filterParameter);
+        let searchTermArray: string[] = []
+        for (const g of genes) {
+            searchTermArray.push("search_term_array%5B%5D="+g)
+        }
+        const data = "http://www.interactome-atlas.org/search_results_interactions?" + params.toString() + "&" + searchTermArray.join("&")
+        let headers = new AxiosHeaders();
+        headers["Accept"] = "application/json";
+        headers["Content-Type"] = "application/json";
+        return axios.post(this.baseURL + "interactome-atlas-proxy/", {link: data}, {headers: headers, responseType: "json"}).then((response) => {
+            return response;
+        });
+    }
+
+    postPrimitiveStatsTest(data: any, type: string = "t-test") {
         let headers = new AxiosHeaders();
         headers["Accept"] = "application/json";
         headers["Content-Type"] = "application/json";
-        return axios.post(this.baseURL + "interactome-atlas-proxy/", data, {headers: headers, responseType: "json"}).then((response) => {
+        return axios.post(this.baseURL + "primitive-stats-test/", {data,type}, {headers: headers, responseType: "json"}).then((response) => {
             return response;
         });
     }