ctxr-cli 0.8.0 → 0.10.0

package/dist/core/checks/integrity-checks.js.map

@@ -1 +1 @@
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package/dist/core/checks/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAM5C,CAAC"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAO5C,CAAC"}

package/dist/core/checks/manifest.js

@@ -2,6 +2,7 @@ import { CATALOG_CHECKS } from './catalog-checks.js';
 import { HARNESS_PORTABILITY_CHECKS } from './harness-portability-checks.js';
 import { INTEGRITY_CHECKS } from './integrity-checks.js';
 import { ORGANIZE_CHECKS } from './organize-checks.js';
+import { RETRIEVAL_CHECKS } from './retrieval-checks.js';
 import { WRITE_LIFECYCLE_CHECKS } from './write-lifecycle-checks.js';
 /**
  * The only file later phases append to when they add a doctor/lint check:
@@ -11,6 +12,7 @@ export const CHECKS = [
     ...WRITE_LIFECYCLE_CHECKS,
     ...CATALOG_CHECKS,
     ...ORGANIZE_CHECKS,
+    ...RETRIEVAL_CHECKS,
     ...INTEGRITY_CHECKS,
     ...HARNESS_PORTABILITY_CHECKS,
 ];

package/dist/core/checks/manifest.js.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,gBAAgB;IACnB,GAAG,0BAA0B;CAC9B,CAAC"}
+{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,gBAAgB;IACnB,GAAG,gBAAgB;IACnB,GAAG,0BAA0B;CAC9B,CAAC"}

package/dist/core/checks/organize-checks.d.ts

@@ -10,7 +10,17 @@ export declare const orphanNotesCheck: import("./types.js").CheckDefinition;
  * `ambiguous` out rather than sharing it.
  */
 export declare const brokenLinksCheck: import("./types.js").CheckDefinition;
-/** context-ingest / context-organize: material captured but never stamped with source identity. */
+/**
+ * context-organize: material still sitting in the inbox.
+ *
+ * Read off the filesystem, not out of `ctx.notes()`. The inbox lives inside
+ * the capture tier, which is a declared retrieval exclusion, so a capture is
+ * not a note and note enumeration cannot see it — a version of this check
+ * that filtered notes would report nothing, forever, and look healthy doing
+ * it. Location is also the whole condition: a capture pipeline may write a
+ * source type and id at capture time, so absent frontmatter no longer
+ * distinguishes ingested from not. Leaving the inbox is what ingest does.
+ */
 export declare const uningestedInboxCheck: import("./types.js").CheckDefinition;
 /**
  * context-organize spec: "notes with no catalog entry as covered by

package/dist/core/checks/organize-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AAYA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,gBAAgB,sCAoB3B,CAAC;AAEH,mGAAmG;AACnG,eAAO,MAAM,oBAAoB,sCAqB/B,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,gCAAgC,sCA2B3C,CAAC;AAEH,eAAO,MAAM,eAAe,wCAO3B,CAAC"}
+{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AAYA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,gBAAgB,sCAoB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,oBAAoB,sCAmB/B,CAAC;AAsBH;;;;;;;GAOG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,gCAAgC,sCA2B3C,CAAC;AAEH,eAAO,MAAM,eAAe,wCAO3B,CAAC"}

package/dist/core/checks/organize-checks.js

@@ -1,9 +1,9 @@
-import { readFile } from 'node:fs/promises';
+import { readdir, readFile } from 'node:fs/promises';
+import path from 'node:path';
 import { AGENTS_MD_SECTION_ORDER, agentsMdPath } from '../agents-doc.js';
 import { checkCatalogCoverage } from '../catalog/build.js';
 import { reorderFencedRegions } from '../fs/fenced-region.js';
 import { orphans } from '../graph/query.js';
-import { hasSourceIdentity } from '../ingest/identity.js';
 import { findStaleRollups } from '../rollup.js';
 import { defineCheck } from './types.js';
 const GRAPH_SKIP_REASON = 'graph has not been built yet — run `ctxr graph build`';
@@ -58,7 +58,17 @@ export const brokenLinksCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
-/** context-ingest / context-organize: material captured but never stamped with source identity. */
+/**
+ * context-organize: material still sitting in the inbox.
+ *
+ * Read off the filesystem, not out of `ctx.notes()`. The inbox lives inside
+ * the capture tier, which is a declared retrieval exclusion, so a capture is
+ * not a note and note enumeration cannot see it — a version of this check
+ * that filtered notes would report nothing, forever, and look healthy doing
+ * it. Location is also the whole condition: a capture pipeline may write a
+ * source type and id at capture time, so absent frontmatter no longer
+ * distinguishes ingested from not. Leaving the inbox is what ingest does.
+ */
 export const uningestedInboxCheck = defineCheck({
     id: 'organize.uningested_inbox_material',
     title: 'Inbox material not yet ingested',
@@ -66,21 +76,41 @@ export const uningestedInboxCheck = defineCheck({
     capability: 'context-organize',
     scopes: ['store'],
     async run(ctx) {
-        const notes = await ctx.notes();
-        const prefix = ctx.config.ingest.inbox_path.endsWith('/')
-            ? ctx.config.ingest.inbox_path
-            : `${ctx.config.ingest.inbox_path}/`;
-        const findings = notes
-            .filter((note) => note.path.startsWith(prefix) && !hasSourceIdentity(note))
-            .map((note) => ({
+        const inboxPath = ctx.config.ingest.inbox_path;
+        const findings = (await filesUnder(path.join(ctx.storeRoot, inboxPath)))
+            .map((relativeToInbox) => `${inboxPath.replace(/\/+$/, '')}/${relativeToInbox}`)
+            .sort()
+            .map((capturePath) => ({
             code: 'organize.uningested_inbox_material',
             severity: 'info',
-            message: `"${note.path}" is in the inbox but has not been ingested.`,
-            subject: note.path,
+            message: `"${capturePath}" is in the inbox but has not been ingested.`,
+            subject: capturePath,
         }));
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+/** Every file under `dir`, recursively, as forward-slash paths relative to it. An absent directory has none. */
+async function filesUnder(dir) {
+    let entries;
+    try {
+        entries = await readdir(dir, { withFileTypes: true });
+    }
+    catch (err) {
+        if (err.code === 'ENOENT')
+            return [];
+        throw err;
+    }
+    const found = [];
+    for (const entry of entries) {
+        if (entry.isDirectory()) {
+            found.push(...(await filesUnder(path.join(dir, entry.name))).map((nested) => `${entry.name}/${nested}`));
+        }
+        else if (entry.isFile() && entry.name !== '.gitkeep') {
+            found.push(entry.name);
+        }
+    }
+    return found;
+}
 /**
  * context-organize spec: "notes with no catalog entry as covered by
  * context-catalog" — the same underlying condition as `catalogCoverageCheck`

package/dist/core/checks/organize-checks.js.map

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package/dist/core/checks/retrieval-checks.d.ts

@@ -0,0 +1,9 @@
+/**
+ * compose-the-retrieval-pass spec (D10): exclusion removes a path from
+ * retrieval; demotion keeps it retrievable and sorts it last. A path declared
+ * both ways is an ambiguity about reachability, and reachability must never be
+ * resolved by precedence order — so doctor fails rather than picking a winner.
+ */
+export declare const retrievalTierOverlapCheck: import("./types.js").CheckDefinition;
+export declare const RETRIEVAL_CHECKS: import("./types.js").CheckDefinition[];
+//# sourceMappingURL=retrieval-checks.d.ts.map

package/dist/core/checks/retrieval-checks.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"retrieval-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/retrieval-checks.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,eAAO,MAAM,yBAAyB,sCAoBpC,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAA8B,CAAC"}

package/dist/core/checks/retrieval-checks.js

@@ -0,0 +1,30 @@
+import { defineCheck } from './types.js';
+/**
+ * compose-the-retrieval-pass spec (D10): exclusion removes a path from
+ * retrieval; demotion keeps it retrievable and sorts it last. A path declared
+ * both ways is an ambiguity about reachability, and reachability must never be
+ * resolved by precedence order — so doctor fails rather than picking a winner.
+ */
+export const retrievalTierOverlapCheck = defineCheck({
+    id: 'retrieval.tier_overlap',
+    title: 'No path prefix is declared both excluded and demoted',
+    severity: 'invariant',
+    capability: 'context-retrieval',
+    scopes: ['store'],
+    async run(ctx) {
+        const normalize = (prefix) => prefix.replace(/\/+$/, '');
+        const excluded = new Set(ctx.config.retrieval.exclude_paths.map(normalize));
+        const findings = ctx.config.retrieval.demote_paths
+            .map(normalize)
+            .filter((prefix) => excluded.has(prefix))
+            .map((prefix) => ({
+            code: 'retrieval.tier_overlap.both',
+            severity: 'error',
+            message: `"${prefix}" is declared both excluded and demoted. Excluded material is not retrievable at all; demoted material is retrievable and ordered last. Declare it as exactly one.`,
+            subject: prefix,
+        }));
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
+export const RETRIEVAL_CHECKS = [retrievalTierOverlapCheck];
+//# sourceMappingURL=retrieval-checks.js.map

package/dist/core/checks/retrieval-checks.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"retrieval-checks.js","sourceRoot":"","sources":["../../../src/core/checks/retrieval-checks.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAEzC;;;;;GAKG;AACH,MAAM,CAAC,MAAM,yBAAyB,GAAG,WAAW,CAAC;IACnD,EAAE,EAAE,wBAAwB;IAC5B,KAAK,EAAE,sDAAsD;IAC7D,QAAQ,EAAE,WAAW;IACrB,UAAU,EAAE,mBAAmB;IAC/B,MAAM,EAAE,CAAC,OAAO,CAAC;IACjB,KAAK,CAAC,GAAG,CAAC,GAAG;QACX,MAAM,SAAS,GAAG,CAAC,MAAc,EAAU,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QACzE,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC;QAC5E,MAAM,QAAQ,GAAc,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC,YAAY;aAC1D,GAAG,CAAC,SAAS,CAAC;aACd,MAAM,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;aACxC,GAAG,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;YAChB,IAAI,EAAE,6BAA6B;YACnC,QAAQ,EAAE,OAAgB;YAC1B,OAAO,EAAE,IAAI,MAAM,oKAAoK;YACvL,OAAO,EAAE,MAAM;SAChB,CAAC,CAAC,CAAC;QACN,OAAO,EAAE,MAAM,EAAE,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC;IACrE,CAAC;CACF,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,gBAAgB,GAAG,CAAC,yBAAyB,CAAC,CAAC"}

package/dist/core/command.d.ts

@@ -17,6 +17,12 @@ export interface CommandOutcome<TData> {
     findings: Finding[];
     /** One-line human-readable summary, used when --json is not passed. */
     humanSummary: string;
+    /**
+     * Diagnostic lines for stderr, emitted through Reporter alongside the result
+     * in BOTH modes — this is how a command says something to a human without
+     * touching stdout, which --json reserves for exactly one JSON value.
+     */
+    notices?: string[];
     storeRoot: string | null;
     schemaVersion: number | null;
 }

package/dist/core/command.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"command.d.ts","sourceRoot":"","sources":["../../src/core/command.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAC7C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAC;AAEhD;;;;;;;GAOG;AACH,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,UAAU,GAAG,QAAQ,CAAC;CAC9B;AAED,MAAM,WAAW,cAAc,CAAC,KAAK;IACnC,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,KAAK,GAAG,IAAI,CAAC;IACnB,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,uEAAuE;IACvE,YAAY,EAAE,MAAM,CAAC;IACrB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;CAC9B"}
+{"version":3,"file":"command.d.ts","sourceRoot":"","sources":["../../src/core/command.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAC7C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,iBAAiB,CAAC;AAEhD;;;;;;;GAOG;AACH,MAAM,WAAW,eAAe;IAC9B,KAAK,EAAE,UAAU,GAAG,QAAQ,CAAC;CAC9B;AAED,MAAM,WAAW,cAAc,CAAC,KAAK;IACnC,QAAQ,EAAE,QAAQ,CAAC;IACnB,IAAI,EAAE,KAAK,GAAG,IAAI,CAAC;IACnB,QAAQ,EAAE,OAAO,EAAE,CAAC;IACpB,uEAAuE;IACvE,YAAY,EAAE,MAAM,CAAC;IACrB;;;;OAIG;IACH,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,aAAa,EAAE,MAAM,GAAG,IAAI,CAAC;CAC9B"}

package/dist/core/content/canonicalize.d.ts

@@ -11,4 +11,14 @@ export declare function canonicalizeBody(raw: string, notePath?: string): string
 export declare function contentHash(raw: string, notePath?: string): string;
 /** Same hash, computed from an already-parsed note's body (no frontmatter to strip). */
 export declare function contentHashOfBody(body: string): string;
+/**
+ * context-ingest spec: the same primitive's binary variant, for a capture
+ * that is not markdown. Nothing is stripped and nothing is canonicalized —
+ * a PDF has no frontmatter to remove and no line endings to normalize, and
+ * rewriting its bytes to pretend otherwise would make the hash describe
+ * something the file is not. It is deliberately the same digest and the same
+ * 16-character prefix, so the two halves of the primitive are comparable
+ * artifacts even though only one of them canonicalizes.
+ */
+export declare function contentHashOfBytes(bytes: Uint8Array): string;
 //# sourceMappingURL=canonicalize.d.ts.map

package/dist/core/content/canonicalize.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"canonicalize.d.ts","sourceRoot":"","sources":["../../../src/core/content/canonicalize.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAQrD;AAED,0EAA0E;AAC1E,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,SAAc,GAAG,MAAM,CAG5E;AAMD,0GAA0G;AAC1G,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,SAAc,GAAG,MAAM,CAEvE;AAED,wFAAwF;AACxF,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEtD"}
+{"version":3,"file":"canonicalize.d.ts","sourceRoot":"","sources":["../../../src/core/content/canonicalize.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAQrD;AAED,0EAA0E;AAC1E,wBAAgB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,SAAc,GAAG,MAAM,CAG5E;AAMD,0GAA0G;AAC1G,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,SAAc,GAAG,MAAM,CAEvE;AAED,wFAAwF;AACxF,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,UAAU,GAAG,MAAM,CAE5D"}

package/dist/core/content/canonicalize.js

@@ -31,4 +31,16 @@ export function contentHash(raw, notePath = '(unknown)') {
 export function contentHashOfBody(body) {
     return hashText(canonicalizeText(body));
 }
+/**
+ * context-ingest spec: the same primitive's binary variant, for a capture
+ * that is not markdown. Nothing is stripped and nothing is canonicalized —
+ * a PDF has no frontmatter to remove and no line endings to normalize, and
+ * rewriting its bytes to pretend otherwise would make the hash describe
+ * something the file is not. It is deliberately the same digest and the same
+ * 16-character prefix, so the two halves of the primitive are comparable
+ * artifacts even though only one of them canonicalizes.
+ */
+export function contentHashOfBytes(bytes) {
+    return createHash('sha256').update(bytes).digest('hex').slice(0, 16);
+}
 //# sourceMappingURL=canonicalize.js.map

package/dist/core/content/canonicalize.js.map

@@ -1 +1 @@
-{"version":3,"file":"canonicalize.js","sourceRoot":"","sources":["../../../src/core/content/canonicalize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAElD;;;;;GAKG;AACH,MAAM,UAAU,gBAAgB,CAAC,IAAY;IAC3C,MAAM,UAAU,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACxE,MAAM,kBAAkB,GAAG,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IAClF,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,CAAC;IACxF,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC;QAC1D,KAAK,CAAC,GAAG,EAAE,CAAC;IACd,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,0EAA0E;AAC1E,MAAM,UAAU,gBAAgB,CAAC,GAAW,EAAE,QAAQ,GAAG,WAAW;IAClE,MAAM,EAAE,IAAI,EAAE,GAAG,aAAa,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IAC9C,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAC;AAChC,CAAC;AAED,SAAS,QAAQ,CAAC,IAAY;IAC5B,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;AAC9E,CAAC;AAED,0GAA0G;AAC1G,MAAM,UAAU,WAAW,CAAC,GAAW,EAAE,QAAQ,GAAG,WAAW;IAC7D,OAAO,QAAQ,CAAC,gBAAgB,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC,CAAC;AACnD,CAAC;AAED,wFAAwF;AACxF,MAAM,UAAU,iBAAiB,CAAC,IAAY;IAC5C,OAAO,QAAQ,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC;AAC1C,CAAC"}
+{"version":3,"file":"canonicalize.js","sourceRoot":"","sources":["../../../src/core/content/canonicalize.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAElD;;;;;GAKG;AACH,MAAM,UAAU,gBAAgB,CAAC,IAAY;IAC3C,MAAM,UAAU,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACxE,MAAM,kBAAkB,GAAG,UAAU,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IAClF,MAAM,KAAK,GAAG,kBAAkB,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,CAAC;IACxF,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC;QAC1D,KAAK,CAAC,GAAG,EAAE,CAAC;IACd,CAAC;IACD,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;AAC1B,CAAC;AAED,0EAA0E;AAC1E,MAAM,UAAU,gBAAgB,CAAC,GAAW,EAAE,QAAQ,GAAG,WAAW;IAClE,MAAM,EAAE,IAAI,EAAE,GAAG,aAAa,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IAC9C,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAC;AAChC,CAAC;AAED,SAAS,QAAQ,CAAC,IAAY;IAC5B,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;AAC9E,CAAC;AAED,0GAA0G;AAC1G,MAAM,UAAU,WAAW,CAAC,GAAW,EAAE,QAAQ,GAAG,WAAW;IAC7D,OAAO,QAAQ,CAAC,gBAAgB,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC,CAAC;AACnD,CAAC;AAED,wFAAwF;AACxF,MAAM,UAAU,iBAAiB,CAAC,IAAY;IAC5C,OAAO,QAAQ,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC;AAC1C,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,UAAU,kBAAkB,CAAC,KAAiB;IAClD,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;AACvE,CAAC"}

package/dist/core/env.d.ts

@@ -1,5 +1,6 @@
 import type { Prompter } from '../prompt/prompter.js';
 import type { GitRunner } from './git/exec.js';
+import type { RegistryClient } from './registry.js';
 /**
  * The injected environment every command runs against. `run(argv, env)` is
  * the one testable seam in the whole CLI: tests build a fake RunEnv (piped
@@ -20,12 +21,16 @@ export interface Io {
 }
 export interface RunEnv {
     cwd: string;
+    /** The running Node binary, used to tell a global install from a working copy. */
+    execPath: string;
     env: Readonly<Record<string, string | undefined>>;
     io: Io;
     /** Set by program.ts before a command runs: the --no-input flag, or implied by --json. */
     noInput: boolean;
     prompter: Prompter;
     git: GitRunner;
+    /** The release registry. The only network-capable port; see core/registry.ts. */
+    registry: RegistryClient;
     now(): Date;
 }
 /**

package/dist/core/env.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"env.d.ts","sourceRoot":"","sources":["../../src/core/env.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAI/C;;;;;;GAMG;AACH,MAAM,WAAW,EAAE;IACjB,KAAK,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;IACnD,MAAM,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;IACpD,MAAM,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;CACrD;AAED,MAAM,WAAW,MAAM;IACrB,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC,CAAC,CAAC;IAClD,EAAE,EAAE,EAAE,CAAC;IACP,0FAA0F;IAC1F,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,QAAQ,CAAC;IACnB,GAAG,EAAE,SAAS,CAAC;IACf,GAAG,IAAI,IAAI,CAAC;CACb;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAElD;AAED,wBAAgB,OAAO,IAAI,MAAM,CAUhC"}
+{"version":3,"file":"env.d.ts","sourceRoot":"","sources":["../../src/core/env.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAE/C,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,eAAe,CAAC;AAIpD;;;;;;GAMG;AACH,MAAM,WAAW,EAAE;IACjB,KAAK,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;IACnD,MAAM,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;IACpD,MAAM,EAAE,MAAM,CAAC,cAAc,GAAG;QAAE,KAAK,CAAC,EAAE,OAAO,CAAA;KAAE,CAAC;CACrD;AAED,MAAM,WAAW,MAAM;IACrB,GAAG,EAAE,MAAM,CAAC;IACZ,kFAAkF;IAClF,QAAQ,EAAE,MAAM,CAAC;IACjB,GAAG,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC,CAAC,CAAC;IAClD,EAAE,EAAE,EAAE,CAAC;IACP,0FAA0F;IAC1F,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,QAAQ,CAAC;IACnB,GAAG,EAAE,SAAS,CAAC;IACf,iFAAiF;IACjF,QAAQ,EAAE,cAAc,CAAC;IACzB,GAAG,IAAI,IAAI,CAAC;CACb;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAElD;AAED,wBAAgB,OAAO,IAAI,MAAM,CAYhC"}

package/dist/core/env.js

@@ -1,4 +1,5 @@
 import { createExecFileGitRunner } from './git/exec.js';
+import { createFetchRegistryClient } from './registry.js';
 import { createInquirerPrompter } from '../prompt/inquirer-prompter.js';
 /**
  * interactive ⇔ stdin.isTTY && stdout.isTTY && !noInput.
@@ -13,11 +14,13 @@ export function isInteractive(env) {
 export function realEnv() {
     return {
         cwd: process.cwd(),
+        execPath: process.execPath,
         env: process.env,
         io: { stdin: process.stdin, stdout: process.stdout, stderr: process.stderr },
         noInput: false,
         prompter: createInquirerPrompter(),
         git: createExecFileGitRunner(),
+        registry: createFetchRegistryClient(),
         now: () => new Date(),
     };
 }

package/dist/core/env.js.map

@@ -1 +1 @@
-{"version":3,"file":"env.js","sourceRoot":"","sources":["../../src/core/env.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,uBAAuB,EAAE,MAAM,eAAe,CAAC;AACxD,OAAO,EAAE,sBAAsB,EAAE,MAAM,gCAAgC,CAAC;AA0BxE;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAAC,GAAW;IACvC,OAAO,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC;AACrF,CAAC;AAED,MAAM,UAAU,OAAO;IACrB,OAAO;QACL,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE;QAClB,GAAG,EAAE,OAAO,CAAC,GAAG;QAChB,EAAE,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE;QAC5E,OAAO,EAAE,KAAK;QACd,QAAQ,EAAE,sBAAsB,EAAE;QAClC,GAAG,EAAE,uBAAuB,EAAE;QAC9B,GAAG,EAAE,GAAG,EAAE,CAAC,IAAI,IAAI,EAAE;KACtB,CAAC;AACJ,CAAC"}
+{"version":3,"file":"env.js","sourceRoot":"","sources":["../../src/core/env.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,uBAAuB,EAAE,MAAM,eAAe,CAAC;AAExD,OAAO,EAAE,yBAAyB,EAAE,MAAM,eAAe,CAAC;AAC1D,OAAO,EAAE,sBAAsB,EAAE,MAAM,gCAAgC,CAAC;AA8BxE;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAAC,GAAW;IACvC,OAAO,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,IAAI,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC;AACrF,CAAC;AAED,MAAM,UAAU,OAAO;IACrB,OAAO;QACL,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE;QAClB,QAAQ,EAAE,OAAO,CAAC,QAAQ;QAC1B,GAAG,EAAE,OAAO,CAAC,GAAG;QAChB,EAAE,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE;QAC5E,OAAO,EAAE,KAAK;QACd,QAAQ,EAAE,sBAAsB,EAAE;QAClC,GAAG,EAAE,uBAAuB,EAAE;QAC9B,QAAQ,EAAE,yBAAyB,EAAE;QACrC,GAAG,EAAE,GAAG,EAAE,CAAC,IAAI,IAAI,EAAE;KACtB,CAAC;AACJ,CAAC"}

package/dist/core/environment/probe.d.ts

@@ -0,0 +1,12 @@
+/**
+ * isolate-the-portability-test (D4): resolves a command name on the executable
+ * search path, returning where it was found or null.
+ *
+ * `PATH` is read from the passed environment, never `process.env`, so a test
+ * can point it at a temp directory without touching the real one — and the
+ * source-level guard that only `core/env.ts` reads process state keeps
+ * holding. Nothing is executed: presence is the question, and running an
+ * unknown binary to ask it would be a different and worse one.
+ */
+export declare function resolveOnPath(command: string, env: Readonly<Record<string, string | undefined>>): Promise<string | null>;
+//# sourceMappingURL=probe.d.ts.map

package/dist/core/environment/probe.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"probe.d.ts","sourceRoot":"","sources":["../../../src/core/environment/probe.ts"],"names":[],"mappings":"AAIA;;;;;;;;;GASG;AACH,wBAAsB,aAAa,CACjC,OAAO,EAAE,MAAM,EACf,GAAG,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,SAAS,CAAC,CAAC,GAChD,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAiBxB"}

package/dist/core/environment/probe.js

@@ -0,0 +1,36 @@
+import { constants } from 'node:fs';
+import { access, stat } from 'node:fs/promises';
+import path from 'node:path';
+/**
+ * isolate-the-portability-test (D4): resolves a command name on the executable
+ * search path, returning where it was found or null.
+ *
+ * `PATH` is read from the passed environment, never `process.env`, so a test
+ * can point it at a temp directory without touching the real one — and the
+ * source-level guard that only `core/env.ts` reads process state keeps
+ * holding. Nothing is executed: presence is the question, and running an
+ * unknown binary to ask it would be a different and worse one.
+ */
+export async function resolveOnPath(command, env) {
+    const search = env.PATH;
+    if (search === undefined || search === '')
+        return null;
+    for (const dir of search.split(path.delimiter)) {
+        if (dir === '')
+            continue;
+        const candidate = path.join(dir, command);
+        try {
+            await access(candidate, constants.X_OK);
+            // A DIRECTORY named `gh` also passes X_OK — that bit means "searchable"
+            // on a directory — so reporting one as the resolved tool would be a
+            // false positive. `command -v` skips them for the same reason.
+            if ((await stat(candidate)).isFile())
+                return candidate;
+        }
+        catch {
+            // Not here, or here but not executable — keep looking; first match wins.
+        }
+    }
+    return null;
+}
+//# sourceMappingURL=probe.js.map

package/dist/core/environment/probe.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"probe.js","sourceRoot":"","sources":["../../../src/core/environment/probe.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AACpC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAChD,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B;;;;;;;;;GASG;AACH,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,OAAe,EACf,GAAiD;IAEjD,MAAM,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC;IACxB,IAAI,MAAM,KAAK,SAAS,IAAI,MAAM,KAAK,EAAE;QAAE,OAAO,IAAI,CAAC;IACvD,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC;QAC/C,IAAI,GAAG,KAAK,EAAE;YAAE,SAAS;QACzB,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,OAAO,CAAC,CAAC;QAC1C,IAAI,CAAC;YACH,MAAM,MAAM,CAAC,SAAS,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC;YACxC,wEAAwE;YACxE,oEAAoE;YACpE,+DAA+D;YAC/D,IAAI,CAAC,MAAM,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,EAAE;gBAAE,OAAO,SAAS,CAAC;QACzD,CAAC;QAAC,MAAM,CAAC;YACP,yEAAyE;QAC3E,CAAC;IACH,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/core/errors.d.ts

@@ -18,12 +18,25 @@ export declare class NoStoreRootError extends ContextureError {
         cwd: string;
     });
 }
+/**
+ * rename-store-root-env-var D2: CONTEXTURE_ROOT is superseded by
+ * CONTEXTURE_STORE_ROOT and is never resolved as a root — only refused, so
+ * an environment migrated in part (the CLI renamed, some other reader of the
+ * old name not yet updated) fails loudly instead of silently walking up and
+ * resolving a different store.
+ */
+export declare class SupersededStoreRootEnvVarError extends ContextureError {
+    constructor();
+}
 export declare class NotAGitRepositoryError extends ContextureError {
     constructor(root: string);
 }
 export declare class SchemaVersionNewerError extends ContextureError {
     constructor(storeVersion: number, supportedVersion: number);
 }
+export declare class SchemaVersionBehindError extends ContextureError {
+    constructor(storeVersion: number, supportedVersion: number);
+}
 export declare class SchemaVersionMissingError extends ContextureError {
     constructor(configPath: string);
 }
@@ -72,6 +85,15 @@ export declare class NoteNotTrackedError extends ContextureError {
 export declare class ArchiveDestinationExistsError extends ContextureError {
     constructor(destinationPath: string);
 }
+export declare class CaptureFileMissingError extends ContextureError {
+    constructor(sidecarPath: string, capturePath: string);
+}
+export declare class CaptureDestinationExistsError extends ContextureError {
+    constructor(destinationPath: string);
+}
+export declare class NoCommitToVerifyError extends ContextureError {
+    constructor();
+}
 export declare class AdapterNotFoundError extends ContextureError {
     constructor(kind: string, id: string);
 }
@@ -84,6 +106,16 @@ export declare class GraphNotBuiltError extends ContextureError {
 export declare class GraphNodeNotFoundError extends ContextureError {
     constructor(nodeId: string);
 }
+/**
+ * compose-the-retrieval-pass spec: a persisted graph that carries a note the
+ * store no longer admits would serve excluded material to every graph query,
+ * so the loader refuses it rather than filtering after the fact — a pre-filter
+ * cannot be safely retrofitted from a post-filter. A graph merely MISSING a
+ * newly added note is under-inclusive, withholds nothing, and still answers.
+ */
+export declare class GraphCarriesExcludedNoteError extends ContextureError {
+    constructor(nodeIds: readonly string[]);
+}
 export declare class MarkerMismatchError extends ContextureError {
     constructor(filePath: string, detail: string);
 }

package/dist/core/errors.d.ts.map

@@ -1 +1 @@
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