ctxr-cli 0.5.0 → 0.7.0

package/dist/core/browse/tree.js

@@ -0,0 +1,53 @@
+/**
+ * browse-navigation-by-folder design.md D2: notes and published pages are
+ * both addressed by `/`-separated relative strings, so one primitive builds
+ * both trees. Folder collapsing has exactly one set of edge cases — a leaf
+ * at the root, a directory sharing a name with a sibling leaf, a directory
+ * whose only child is another directory — and handling them once means the
+ * two areas cannot disagree about the shape of the store.
+ */
+/**
+ * Directories before leaves, then by codepoint — the same ordering
+ * `listNotes()` and `publishPages()` already produce, so the tree is a
+ * regrouping of a sorted enumeration rather than a reordering of it.
+ */
+function compareNodes(a, b) {
+    if (a.kind !== b.kind)
+        return a.kind === 'directory' ? -1 : 1;
+    if (a.name < b.name)
+        return -1;
+    if (a.name > b.name)
+        return 1;
+    return 0;
+}
+function finalize(builder) {
+    const directories = [...builder.directories.entries()].map(([name, child]) => ({ kind: 'directory', name, path: child.path, children: finalize(child) }));
+    return [...directories, ...builder.leaves].sort(compareNodes);
+}
+/**
+ * Groups `paths` by their directory segments, to the full depth they carry.
+ * A path with no directory segment becomes a leaf at the top level. The
+ * result is deterministic for a given set of paths, whatever order they
+ * arrive in.
+ */
+export function buildPathTree(paths, labelFor, hrefFor) {
+    const root = { path: '', directories: new Map(), leaves: [] };
+    for (const entryPath of paths) {
+        const segments = entryPath.split('/').filter((segment) => segment.length > 0);
+        const name = segments.pop();
+        if (name === undefined)
+            continue;
+        let node = root;
+        for (const segment of segments) {
+            let child = node.directories.get(segment);
+            if (!child) {
+                child = { path: node.path ? `${node.path}/${segment}` : segment, directories: new Map(), leaves: [] };
+                node.directories.set(segment, child);
+            }
+            node = child;
+        }
+        node.leaves.push({ kind: 'leaf', name, path: entryPath, label: labelFor(entryPath), href: hrefFor(entryPath) });
+    }
+    return finalize(root);
+}
+//# sourceMappingURL=tree.js.map

package/dist/core/browse/tree.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tree.js","sourceRoot":"","sources":["../../../src/core/browse/tree.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AA4BH;;;;GAIG;AACH,SAAS,YAAY,CAAC,CAAW,EAAE,CAAW;IAC5C,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,IAAI;QAAE,OAAO,CAAC,CAAC,IAAI,KAAK,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAC9D,IAAI,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI;QAAE,OAAO,CAAC,CAAC,CAAC;IAC/B,IAAI,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI;QAAE,OAAO,CAAC,CAAC;IAC9B,OAAO,CAAC,CAAC;AACX,CAAC;AAED,SAAS,QAAQ,CAAC,OAAyB;IACzC,MAAM,WAAW,GAAG,CAAC,GAAG,OAAO,CAAC,WAAW,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CACxD,CAAC,CAAC,IAAI,EAAE,KAAK,CAAC,EAAiB,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,QAAQ,EAAE,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,CAC7G,CAAC;IACF,OAAO,CAAC,GAAG,WAAW,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;AAChE,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,aAAa,CAC3B,KAAwB,EACxB,QAAkC,EAClC,OAAiC;IAEjC,MAAM,IAAI,GAAqB,EAAE,IAAI,EAAE,EAAE,EAAE,WAAW,EAAE,IAAI,GAAG,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC;IAEhF,KAAK,MAAM,SAAS,IAAI,KAAK,EAAE,CAAC;QAC9B,MAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAC9E,MAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,EAAE,CAAC;QAC5B,IAAI,IAAI,KAAK,SAAS;YAAE,SAAS;QAEjC,IAAI,IAAI,GAAG,IAAI,CAAC;QAChB,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;YAC/B,IAAI,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAC1C,IAAI,CAAC,KAAK,EAAE,CAAC;gBACX,KAAK,GAAG,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,IAAI,OAAO,EAAE,CAAC,CAAC,CAAC,OAAO,EAAE,WAAW,EAAE,IAAI,GAAG,EAAE,EAAE,MAAM,EAAE,EAAE,EAAE,CAAC;gBACtG,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;YACvC,CAAC;YACD,IAAI,GAAG,KAAK,CAAC;QACf,CAAC;QACD,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,KAAK,EAAE,QAAQ,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,OAAO,CAAC,SAAS,CAAC,EAAE,CAAC,CAAC;IAClH,CAAC;IAED,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC;AACxB,CAAC"}

package/dist/core/catalog/build.d.ts

@@ -44,6 +44,6 @@ export declare function checkCatalogStale(store: Store): Promise<CatalogStaleEnt
  * real section that simply hasn't been built yet (or has no notes) returns
  * an empty string, which is a valid, uninteresting result, not an error.
  */
-export declare function readCatalogSection(store: Store, sectionId: string, asContext?: string): Promise<string | null>;
+export declare function readCatalogSection(store: Store, sectionId: string): Promise<string | null>;
 export declare function catalogSectionPath(store: Store, section: CatalogSection): string;
 //# sourceMappingURL=build.d.ts.map

package/dist/core/catalog/build.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../../src/core/catalog/build.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAML,KAAK,cAAc,EACpB,MAAM,YAAY,CAAC;AAEpB,eAAO,MAAM,aAAa,+BAA8B,CAAC;AAoBzD,MAAM,WAAW,yBAAyB;IACxC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,yBAAyB,EAAE,CAAC;IACtC,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;GAKG;AACH,wBAAsB,YAAY,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAmB5E;AAED,MAAM,WAAW,qBAAqB;IACpC,wDAAwD;IACxD,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,8FAA8F;IAC9F,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;;GAOG;AACH,wBAAsB,oBAAoB,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,qBAAqB,CAAC,CAgBvF;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,wGAAwG;AACxG,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAmBlF;AAED;;;;GAIG;AACH,wBAAsB,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAMpH;AAED,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,cAAc,GAAG,MAAM,CAEhF"}
+{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../../src/core/catalog/build.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAML,KAAK,cAAc,EACpB,MAAM,YAAY,CAAC;AAEpB,eAAO,MAAM,aAAa,+BAA8B,CAAC;AAoBzD,MAAM,WAAW,yBAAyB;IACxC,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,kBAAkB;IACjC,QAAQ,EAAE,yBAAyB,EAAE,CAAC;IACtC,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;GAKG;AACH,wBAAsB,YAAY,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAmB5E;AAED,MAAM,WAAW,qBAAqB;IACpC,wDAAwD;IACxD,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,8FAA8F;IAC9F,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;;;;GAOG;AACH,wBAAsB,oBAAoB,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,qBAAqB,CAAC,CAgBvF;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,wGAAwG;AACxG,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,KAAK,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAmBlF;AAED;;;;GAIG;AACH,wBAAsB,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAKhG;AAED,wBAAgB,kBAAkB,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,cAAc,GAAG,MAAM,CAEhF"}

package/dist/core/catalog/build.js

@@ -99,12 +99,11 @@ export async function checkCatalogStale(store) {
  * real section that simply hasn't been built yet (or has no notes) returns
  * an empty string, which is a valid, uninteresting result, not an error.
  */
-export async function readCatalogSection(store, sectionId, asContext) {
+export async function readCatalogSection(store, sectionId) {
     const sections = catalogSectionsFor(store.config);
     const section = sections.find((s) => s.id === sectionId);
     if (!section)
         return null;
-    void asContext; // visibility filtering wired in Phase 5
     return readIfExists(path.join(store.root, store.config.catalog.path, sectionFileName(section)));
 }
 export function catalogSectionPath(store, section) {

package/dist/core/catalog/build.js.map

@@ -1 +1 @@
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package/dist/core/catalog/model.d.ts

@@ -21,6 +21,8 @@ export interface CatalogGlossEntry {
 }
 /** Extracts existing entries' glosses (and confirmed hashes) keyed by note path, so a rebuild can preserve them. */
 export declare function parseCatalogGlosses(body: string): Map<string, CatalogGlossEntry>;
+/** The store's answer to "what is this note called": frontmatter `title`, else the filename stem. */
+export declare function titleFor(note: Note): string;
 /**
  * Structure (identity + path) is always freshly generated; the gloss is
  * preserved from `existing` when present, and left empty for a note that

package/dist/core/catalog/model.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"model.d.ts","sourceRoot":"","sources":["../../../src/core/catalog/model.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAE1D,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAE7C;;;;;GAKG;AACH,MAAM,WAAW,cAAc;IAC7B,EAAE,EAAE,MAAM,CAAC;IACX,sFAAsF;IACtF,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;CAC1B;AAED,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,WAAW,GAAG,cAAc,EAAE,CAQxE;AAED,wBAAgB,cAAc,CAAC,QAAQ,EAAE,SAAS,cAAc,EAAE,EAAE,QAAQ,EAAE,MAAM,GAAG,cAAc,CAQpG;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,cAAc,GAAG,MAAM,CAE/D;AAED,MAAM,WAAW,iBAAiB;IAChC,KAAK,EAAE,MAAM,CAAC;IACd,wGAAwG;IACxG,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAID,oHAAoH;AACpH,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,EAAE,iBAAiB,CAAC,CAShF;AAED,qGAAqG;AACrG,wBAAgB,QAAQ,CAAC,IAAI,EAAE,IAAI,GAAG,MAAM,CAI3C;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,IAAI,EAAE,QAAQ,EAAE,WAAW,CAAC,MAAM,EAAE,iBAAiB,CAAC,GAAG,MAAM,CAMvG"}

package/dist/core/catalog/model.js

@@ -34,7 +34,8 @@ export function parseCatalogGlosses(body) {
     }
     return entries;
 }
-function titleFor(note) {
+/** The store's answer to "what is this note called": frontmatter `title`, else the filename stem. */
+export function titleFor(note) {
     const fmTitle = note.frontmatter?.title;
     if (typeof fmTitle === 'string' && fmTitle.length > 0)
         return fmTitle;

package/dist/core/catalog/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../../src/core/catalog/model.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAe/D,MAAM,UAAU,kBAAkB,CAAC,MAAmB;IACpD,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxC,OAAO,CAAC,EAAE,EAAE,EAAE,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC5C,CAAC;IACD,OAAO;QACL,GAAG,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,EAAE,EAAE,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE,SAAS,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;QACzG,EAAE,EAAE,EAAE,eAAe,EAAE,SAAS,EAAE,IAAI,EAAE;KACzC,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,QAAmC,EAAE,QAAgB;IAClF,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;QAC/B,IAAI,OAAO,CAAC,SAAS,EAAE,CAAC;YACtB,MAAM,MAAM,GAAG,OAAO,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,OAAO,CAAC,SAAS,GAAG,CAAC;YAC7F,IAAI,QAAQ,CAAC,UAAU,CAAC,MAAM,CAAC;gBAAE,OAAO,OAAO,CAAC;QAClD,CAAC;IACH,CAAC;IACD,OAAO,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAE,CAAC,CAAC,+BAA+B;AACxE,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,OAAuB;IACrD,OAAO,GAAG,OAAO,CAAC,EAAE,KAAK,CAAC;AAC5B,CAAC;AAQD,MAAM,QAAQ,GAAG,6EAA6E,CAAC;AAE/F,oHAAoH;AACpH,MAAM,UAAU,mBAAmB,CAAC,IAAY;IAC9C,MAAM,OAAO,GAAG,IAAI,GAAG,EAA6B,CAAC;IACrD,KAAK,MAAM,IAAI,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QACpC,MAAM,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClC,IAAI,KAAK,EAAE,CAAC;YACV,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAE,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACpE,CAAC;IACH,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,qGAAqG;AACrG,MAAM,UAAU,QAAQ,CAAC,IAAU;IACjC,MAAM,OAAO,GAAG,IAAI,CAAC,WAAW,EAAE,KAAK,CAAC;IACxC,IAAI,OAAO,OAAO,KAAK,QAAQ,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC;QAAE,OAAO,OAAO,CAAC;IACtE,OAAO,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;AACzC,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,kBAAkB,CAAC,IAAU,EAAE,QAAgD;IAC7F,MAAM,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACtC,MAAM,KAAK,GAAG,KAAK,EAAE,KAAK,IAAI,EAAE,CAAC;IACjC,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI,iBAAiB,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAC1F,MAAM,UAAU,GAAG,IAAI,CAAC,CAAC,CAAC,cAAc,IAAI,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;IACxD,OAAO,OAAO,QAAQ,CAAC,IAAI,CAAC,SAAS,IAAI,CAAC,IAAI,SAAS,KAAK,GAAG,UAAU,EAAE,CAAC;AAC9E,CAAC"}

package/dist/core/checks/integrity-checks.d.ts

@@ -8,17 +8,33 @@
  */
 export declare const derivedArtifactStalenessCheck: import("./types.js").CheckDefinition;
 /**
- * store-integrity spec: "dangling links... (per context-retrieval)." A
+ * store-integrity spec: "ambiguous link resolution... (per context-retrieval)." A
  * genuine identity collision is NOT re-checked here — buildGraphFromNotes
  * refuses to persist a graph that has one (core/graph/model.ts), so a
  * persisted graph.json is proof by construction that none exists; there is
  * nothing for a doctor check to find after the fact.
+ *
+ * `graph.dangling` covers two reasons (core/graph/model.ts: DanglingReason).
+ * They're split by owner, not shared: a link that resolves to no note at all
+ * (`not_found`) can't be told apart from a healthy forward reference, so it's
+ * lint's alone (organize-checks.ts:brokenLinksCheck, observation, code
+ * organize.broken_link). A link that resolves ambiguously, to more than one
+ * note (`ambiguous`), is always a mechanical defect with a fix (alias
+ * syntax) — never a legitimate "leave it" case — so it's this check's alone.
  */
-export declare const graphDanglingLinksCheck: import("./types.js").CheckDefinition;
+export declare const graphAmbiguousLinksCheck: import("./types.js").CheckDefinition;
 /** store-integrity spec: "schema version currency (per store-lifecycle)." */
 export declare const schemaVersionCurrencyCheck: import("./types.js").CheckDefinition;
 /** store-integrity spec: "adapter compatibility (per adapters)." */
 export declare const adapterCompatibilityCheck: import("./types.js").CheckDefinition;
+/**
+ * harness-portability spec (vendored-craft-skills): "a broken bridge is
+ * detected and repaired" — the read-only half. A harness whose effective
+ * directory already equals the configured skills path has no bridge to
+ * check (same as `bridgeHarnessSkills` skipping it, per the adapters spec's
+ * "no bridge is created" scenario).
+ */
+export declare const harnessSkillsBridgeCheck: import("./types.js").CheckDefinition;
 /**
  * harness-portability spec: "A harness-specific entry file only imports" —
  * SHALL contain nothing beyond the adapter's own managed import plus that

package/dist/core/checks/integrity-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"integrity-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/integrity-checks.ts"],"names":[],"mappings":"AAiCA;;;;;;;GAOG;AACH,eAAO,MAAM,6BAA6B,sCAkCxC,CAAC;AAEH;;;;;;GAMG;AAGH,eAAO,MAAM,uBAAuB,sCAoBlC,CAAC;AAEH,6EAA6E;AAC7E,eAAO,MAAM,0BAA0B,sCAsBrC,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,yBAAyB,sCAuBpC,CAAC;AAYH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,0CAA0C,sCAgDrD,CAAC;AAEH,qEAAqE;AACrE,eAAO,MAAM,6BAA6B,sCAgBxC,CAAC;AAEH;;;;;;;;;GASG;AACH,eAAO,MAAM,kCAAkC,sCA4B7C,CAAC;AAqBH;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,wCAAwC,sCAiEnD,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAS5B,CAAC"}
+{"version":3,"file":"integrity-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/integrity-checks.ts"],"names":[],"mappings":"AAkCA;;;;;;;GAOG;AACH,eAAO,MAAM,6BAA6B,sCAkCxC,CAAC;AAEH;;;;;;;;;;;;;;GAcG;AACH,eAAO,MAAM,wBAAwB,sCAsBnC,CAAC;AAEH,6EAA6E;AAC7E,eAAO,MAAM,0BAA0B,sCAsBrC,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,yBAAyB,sCAuBpC,CAAC;AAEH;;;;;;GAMG;AACH,eAAO,MAAM,wBAAwB,sCAwBnC,CAAC;AAYH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,0CAA0C,sCAiDrD,CAAC;AAEH,qEAAqE;AACrE,eAAO,MAAM,6BAA6B,sCAgBxC,CAAC;AAEH;;;;;;;;;GASG;AACH,eAAO,MAAM,kCAAkC,sCA4B7C,CAAC;AAqBH;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,wCAAwC,sCAiEnD,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAU5B,CAAC"}

package/dist/core/checks/integrity-checks.js

@@ -7,6 +7,7 @@ import { checkCatalogStale } from '../catalog/build.js';
 import { extractDocMetadata, scanConventions } from '../conventions.js';
 import { readFencedRegion, removeFencedRegion } from '../fs/fenced-region.js';
 import { buildGraphFromNotes, graphBuildOptions } from '../graph/model.js';
+import { effectiveSkillsDir, isBridgeBroken } from '../harness/bridge.js';
 import { harnessEntryFence } from '../markers.js';
 import { defineCheck } from './types.js';
 /**
@@ -61,17 +62,23 @@ export const derivedArtifactStalenessCheck = defineCheck({
     },
 });
 /**
- * store-integrity spec: "dangling links... (per context-retrieval)." A
+ * store-integrity spec: "ambiguous link resolution... (per context-retrieval)." A
  * genuine identity collision is NOT re-checked here — buildGraphFromNotes
  * refuses to persist a graph that has one (core/graph/model.ts), so a
  * persisted graph.json is proof by construction that none exists; there is
  * nothing for a doctor check to find after the fact.
+ *
+ * `graph.dangling` covers two reasons (core/graph/model.ts: DanglingReason).
+ * They're split by owner, not shared: a link that resolves to no note at all
+ * (`not_found`) can't be told apart from a healthy forward reference, so it's
+ * lint's alone (organize-checks.ts:brokenLinksCheck, observation, code
+ * organize.broken_link). A link that resolves ambiguously, to more than one
+ * note (`ambiguous`), is always a mechanical defect with a fix (alias
+ * syntax) — never a legitimate "leave it" case — so it's this check's alone.
  */
-// Shares detection with organize-checks.ts:brokenLinksCheck (lint, observation) under a
-// different id (task 9.4: two ids, two severity lanes, one condition, never double-counted).
-export const graphDanglingLinksCheck = defineCheck({
-    id: 'graph.dangling_links',
-    title: 'The graph has no dangling links',
+export const graphAmbiguousLinksCheck = defineCheck({
+    id: 'graph.ambiguous_links',
+    title: 'The graph has no ambiguous links',
     severity: 'invariant',
     capability: 'context-retrieval',
     scopes: ['store'],
@@ -80,10 +87,12 @@ export const graphDanglingLinksCheck = defineCheck({
         if (!graph) {
             return { status: 'skip', skipReason: 'graph has not been built yet — run `ctxr graph build`', findings: [] };
         }
-        const findings = graph.dangling.map((d) => ({
-            code: 'graph.dangling_link',
+        const findings = graph.dangling
+            .filter((d) => d.reason === 'ambiguous')
+            .map((d) => ({
+            code: 'graph.ambiguous_link',
             severity: 'error',
-            message: `"${d.from}" links to "${d.target}", which is ${d.reason === 'ambiguous' ? 'ambiguous' : 'not found'}.`,
+            message: `"${d.from}" links to "${d.target}", which is ambiguous.`,
             subject: d.from,
             details: { target: d.target, reason: d.reason },
         }));
@@ -140,6 +149,39 @@ export const adapterCompatibilityCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+/**
+ * harness-portability spec (vendored-craft-skills): "a broken bridge is
+ * detected and repaired" — the read-only half. A harness whose effective
+ * directory already equals the configured skills path has no bridge to
+ * check (same as `bridgeHarnessSkills` skipping it, per the adapters spec's
+ * "no bridge is created" scenario).
+ */
+export const harnessSkillsBridgeCheck = defineCheck({
+    id: 'harness_portability.skills_bridge',
+    title: 'Every declared harness\'s skills directory resolves to the canonical skills path',
+    severity: 'invariant',
+    capability: 'harness-portability',
+    scopes: ['store'],
+    async run(ctx) {
+        const canonical = ctx.config.harness.skills_path;
+        const findings = [];
+        for (const adapter of configuredAdapters(ctx.config, 'harness-generation')) {
+            const harnessDir = effectiveSkillsDir(ctx.config, adapter.id, adapter.skillsDir);
+            if (harnessDir === canonical)
+                continue;
+            if (await isBridgeBroken(ctx.storeRoot, canonical, harnessDir)) {
+                findings.push({
+                    code: 'harness_portability.broken_bridge',
+                    severity: 'error',
+                    message: `"${harnessDir}" (${adapter.id}) does not resolve to the configured skills path "${canonical}" — run \`ctxr update\` to repair it.`,
+                    subject: adapter.id,
+                    details: { path: harnessDir, canonical },
+                });
+            }
+        }
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
 const MARKDOWN_HEADING_RE = /^#{1,6}\s+(.+)$/gm;
 function headingsOf(text) {
     const headings = new Set();
@@ -185,6 +227,8 @@ export const harnessEntryNoDuplicateConventionTextCheck = defineCheck({
         const agentsMdHeadings = headingsOf(agentsMdContent);
         const findings = [];
         for (const adapter of adapters) {
+            if (adapter.entryFileName === undefined)
+                continue; // skills-only adapter — no entry file to check
             let entryContent;
             try {
                 entryContent = await readFile(path.join(ctx.storeRoot, adapter.entryFileName), 'utf8');
@@ -360,10 +404,11 @@ export const stagedAgentsMdInlinedContentCurrentCheck = defineCheck({
 });
 export const INTEGRITY_CHECKS = [
     derivedArtifactStalenessCheck,
-    graphDanglingLinksCheck,
+    graphAmbiguousLinksCheck,
     schemaVersionCurrencyCheck,
     adapterCompatibilityCheck,
     harnessEntryNoDuplicateConventionTextCheck,
+    harnessSkillsBridgeCheck,
     noUnrecognizedConfigKeysCheck,
     agentsMdInlinedContentCurrentCheck,
     stagedAgentsMdInlinedContentCurrentCheck,

package/dist/core/checks/integrity-checks.js.map

@@ -1 +1 @@
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package/dist/core/checks/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAS5C,CAAC"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAM5C,CAAC"}

package/dist/core/checks/manifest.js

@@ -1,8 +1,6 @@
 import { CATALOG_CHECKS } from './catalog-checks.js';
-import { DISCLOSURE_CHECKS } from './disclosure-checks.js';
 import { HARNESS_PORTABILITY_CHECKS } from './harness-portability-checks.js';
 import { INTEGRITY_CHECKS } from './integrity-checks.js';
-import { failClosedVisibilityCheck, failClosedVisibilityInvariantCheck } from '../notes/checks.js';
 import { ORGANIZE_CHECKS } from './organize-checks.js';
 import { WRITE_LIFECYCLE_CHECKS } from './write-lifecycle-checks.js';
 /**
@@ -10,12 +8,9 @@ import { WRITE_LIFECYCLE_CHECKS } from './write-lifecycle-checks.js';
  * one import, one array entry. Nothing else under checks/ changes.
  */
 export const CHECKS = [
-    failClosedVisibilityCheck,
-    failClosedVisibilityInvariantCheck,
     ...WRITE_LIFECYCLE_CHECKS,
     ...CATALOG_CHECKS,
     ...ORGANIZE_CHECKS,
-    ...DISCLOSURE_CHECKS,
     ...INTEGRITY_CHECKS,
     ...HARNESS_PORTABILITY_CHECKS,
 ];

package/dist/core/checks/manifest.js.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,yBAAyB,EAAE,kCAAkC,EAAE,MAAM,oBAAoB,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,yBAAyB;IACzB,kCAAkC;IAClC,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,iBAAiB;IACpB,GAAG,gBAAgB;IACnB,GAAG,0BAA0B;CAC9B,CAAC"}
+{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,0BAA0B,EAAE,MAAM,iCAAiC,CAAC;AAC7E,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,gBAAgB;IACnB,GAAG,0BAA0B;CAC9B,CAAC"}

package/dist/core/checks/organize-checks.d.ts

@@ -1,6 +1,14 @@
 /** context-organize spec: "orphaned notes" — reported by lint, never failed by doctor. */
 export declare const orphanNotesCheck: import("./types.js").CheckDefinition;
-/** context-organize spec: "broken links" — the graph's dangling links (not_found or ambiguous), reported not failed. Shares detection with the doctor-facing invariant checks/integrity-checks.ts:graphDanglingLinksCheck under a different id (task 9.4: two ids, two severity lanes, one condition, never double-counted within a single run). */
+/**
+ * context-organize spec: "broken links" — a link that resolves to no note at all
+ * (`not_found`), reported not failed. `graph.dangling` also carries `ambiguous`-reason
+ * records (a link matching two or more notes' basenames), but those are
+ * checks/integrity-checks.ts:graphAmbiguousLinksCheck's alone (doctor, invariant): resolution
+ * is mechanically broken there, with an always-applicable fix, unlike a `not_found` link,
+ * which can't be told apart from a healthy forward reference — so this check filters
+ * `ambiguous` out rather than sharing it.
+ */
 export declare const brokenLinksCheck: import("./types.js").CheckDefinition;
 /** context-ingest / context-organize: material captured but never stamped with source identity. */
 export declare const uningestedInboxCheck: import("./types.js").CheckDefinition;
@@ -9,8 +17,7 @@ export declare const uningestedInboxCheck: import("./types.js").CheckDefinition;
  * context-catalog" — the same underlying condition as `catalogCoverageCheck`
  * (doctor, invariant), surfaced here too as its own observation-severity
  * check id so lint can report it without doctor's invariant double-counting
- * lint's finding or vice versa (same pattern as the fail-closed-visibility
- * pair in Phase 5). Only `missing` is in scope here — `dangling` catalog
+ * lint's finding or vice versa. Only `missing` is in scope here — `dangling` catalog
  * entries are a stricter integrity concern doctor alone owns.
  */
 export declare const catalogGapsLintCheck: import("./types.js").CheckDefinition;

package/dist/core/checks/organize-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AAYA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH,oVAAoV;AACpV,eAAO,MAAM,gBAAgB,sCAkB3B,CAAC;AAEH,mGAAmG;AACnG,eAAO,MAAM,oBAAoB,sCAqB/B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,gCAAgC,sCA2B3C,CAAC;AAEH,eAAO,MAAM,eAAe,wCAO3B,CAAC"}
+{"version":3,"file":"organize-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/organize-checks.ts"],"names":[],"mappings":"AAYA,0FAA0F;AAC1F,eAAO,MAAM,gBAAgB,sCAiB3B,CAAC;AAEH;;;;;;;;GAQG;AACH,eAAO,MAAM,gBAAgB,sCAoB3B,CAAC;AAEH,mGAAmG;AACnG,eAAO,MAAM,oBAAoB,sCAqB/B,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,oBAAoB,sCAgB/B,CAAC;AAEH,oKAAoK;AACpK,eAAO,MAAM,gBAAgB,sCAqB3B,CAAC;AAEH;;;;;;;;;;GAUG;AACH,eAAO,MAAM,gCAAgC,sCA2B3C,CAAC;AAEH,eAAO,MAAM,eAAe,wCAO3B,CAAC"}

package/dist/core/checks/organize-checks.js

@@ -27,7 +27,15 @@ export const orphanNotesCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
-/** context-organize spec: "broken links" — the graph's dangling links (not_found or ambiguous), reported not failed. Shares detection with the doctor-facing invariant checks/integrity-checks.ts:graphDanglingLinksCheck under a different id (task 9.4: two ids, two severity lanes, one condition, never double-counted within a single run). */
+/**
+ * context-organize spec: "broken links" — a link that resolves to no note at all
+ * (`not_found`), reported not failed. `graph.dangling` also carries `ambiguous`-reason
+ * records (a link matching two or more notes' basenames), but those are
+ * checks/integrity-checks.ts:graphAmbiguousLinksCheck's alone (doctor, invariant): resolution
+ * is mechanically broken there, with an always-applicable fix, unlike a `not_found` link,
+ * which can't be told apart from a healthy forward reference — so this check filters
+ * `ambiguous` out rather than sharing it.
+ */
 export const brokenLinksCheck = defineCheck({
     id: 'organize.broken_links',
     title: 'Notes with dangling wikilinks',
@@ -38,10 +46,12 @@ export const brokenLinksCheck = defineCheck({
         const graph = await ctx.graph();
         if (!graph)
             return { status: 'skip', skipReason: GRAPH_SKIP_REASON, findings: [] };
-        const findings = graph.dangling.map((d) => ({
+        const findings = graph.dangling
+            .filter((d) => d.reason === 'not_found')
+            .map((d) => ({
             code: 'organize.broken_link',
             severity: 'info',
-            message: `"${d.from}" links to "${d.target}", which is ${d.reason === 'ambiguous' ? 'ambiguous' : 'not found'}.`,
+            message: `"${d.from}" links to "${d.target}", which is not found.`,
             subject: d.from,
             details: { target: d.target, reason: d.reason },
         }));
@@ -76,8 +86,7 @@ export const uningestedInboxCheck = defineCheck({
  * context-catalog" — the same underlying condition as `catalogCoverageCheck`
  * (doctor, invariant), surfaced here too as its own observation-severity
  * check id so lint can report it without doctor's invariant double-counting
- * lint's finding or vice versa (same pattern as the fail-closed-visibility
- * pair in Phase 5). Only `missing` is in scope here — `dangling` catalog
+ * lint's finding or vice versa. Only `missing` is in scope here — `dangling` catalog
  * entries are a stricter integrity concern doctor alone owns.
  */
 export const catalogGapsLintCheck = defineCheck({

package/dist/core/checks/organize-checks.js.map

@@ -1 +1 @@
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package/dist/core/checks/types.d.ts

@@ -29,7 +29,7 @@ export interface CheckResult {
 /**
  * Memoized accessors shared across every check in one run. Reserved with
  * this shape from Phase 0 so that by Phase 9 — when catalog coverage,
- * dangling-link, identity-collision, fail-closed-visibility, and gloss-rot
+ * dangling-link, identity-collision, and gloss-rot
  * checks all need the full note set — adding memoization doesn't mean
  * changing `run()`'s signature across six phases of accumulated checks.
  */

package/dist/core/convention-doc.d.ts

@@ -1,33 +1,35 @@
 import type { StoreConfig } from '../config/schema.js';
 /**
- * compose-store-guidance-documents: the shipped baseline convention,
+ * compose-store-guidance-documents: the shipped baseline conventions,
  * rendered from this store's own configuration — never a shipped profile's
- * or one deployment's names. This is what `syncBaselineConvention` writes;
+ * or one deployment's names. This is what `renderConventionsSection` inlines;
  * it is never composed with anything else. `AGENTS.md`'s "Store
- * conventions" section (inline-conventions-and-mission's
- * `scanConventions`/`renderConventionsSection`) inlines it as one of
- * however many convention files the guidance directory holds, exactly like
- * any operator-authored one.
+ * conventions" section renders this directly as its first block, ahead of
+ * however many operator-authored files the guidance directory holds — the
+ * baseline itself is not one of them and has no file there.
  */
-export declare function renderBaselineConvention(config: StoreConfig): string;
+export declare function renderBaselineConventions(config: StoreConfig): string;
 /**
- * compose-store-guidance-documents: contexture-owned, the same way a
- * shipped skill copy is (`syncShippedSkills` in skills.ts) — written by
- * `ctxr init`, rewritten wholesale by `ctxr update` on drift, never
- * hand-edited. A single file, so this is simpler than the skills sync (no
- * directory scan, no orphan cleanup): read-compare-write, reporting whether
- * it changed.
+ * The baseline is rendered straight into AGENTS.md by `renderConventionsSection`
+ * and is no longer a file in the guidance directory. Its bytes were already
+ * committed inside AGENTS.md, so a second tracked copy three directories away
+ * bought nothing and cost a diff on every config change — and having one
+ * tool-owned file among the operator's own is what made "do not edit this one,
+ * edit that one" a footgun in the first place.
+ *
+ * This removes the copy previous versions wrote, under either of its names, so
+ * a store that upgrades does not end up inlining the baseline twice: the
+ * guidance directory is scanned wholesale.
  */
-export declare function syncBaselineConvention(root: string, config: StoreConfig): Promise<{
+export declare function removeManagedBaselineFile(root: string, config: StoreConfig): Promise<{
     changed: boolean;
 }>;
 /**
- * The operator's own convention source, seeded once with heading prompts
- * only — no content contexture would be guessing at — and never touched
- * again once it exists (unlike the baseline file, this one is
- * operator-owned).
+ * This store's own conventions — its house rules — seeded once with heading
+ * prompts only, no content contexture would be guessing at, and never touched
+ * again once it exists (unlike the baseline file, this one is operator-owned).
  */
-export declare function seedCustomConventionFile(root: string, config: StoreConfig): Promise<{
+export declare function seedHouseConventionsFile(root: string, config: StoreConfig): Promise<{
     created: boolean;
 }>;
 //# sourceMappingURL=convention-doc.d.ts.map

package/dist/core/convention-doc.d.ts.map

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