ctxr-cli 0.4.1 → 0.5.0

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AA0B1E,OAAO,EAAmE,KAAK,mBAAmB,EAAE,MAAM,qBAAqB,CAAC;AAYhI,OAAO,EAAiB,KAAK,MAAM,EAAE,MAAM,gBAAgB,CAAC;AAgB5D,eAAO,MAAM,QAAQ,EAAE,eAAqC,CAAC;AAE7D,MAAM,WAAW,SAAS;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB,EAAE,OAAO,CAAC;IAC7B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,GAAG,EAAE;QAAE,kBAAkB,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,cAAc,EAAE,MAAM,GAAG,IAAI,CAAA;KAAE,CAAC;IAC3F,wFAAwF;IACxF,QAAQ,EAAE;QAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,MAAM,EAAE,mBAAmB,EAAE,CAAA;KAAE,CAAC;IACpE,cAAc,EAAE,MAAM,CAAC;CACxB;AAqMD,wBAAsB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,OAAO,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAY9F"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AA6B1E,OAAO,EAAmE,KAAK,mBAAmB,EAAE,MAAM,qBAAqB,CAAC;AAchI,OAAO,EAAiB,KAAK,MAAM,EAAE,MAAM,gBAAgB,CAAC;AAgB5D,eAAO,MAAM,QAAQ,EAAE,eAAqC,CAAC;AAE7D,MAAM,WAAW,SAAS;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB,EAAE,OAAO,CAAC;IAC7B,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,GAAG,EAAE;QAAE,kBAAkB,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,cAAc,EAAE,MAAM,GAAG,IAAI,CAAA;KAAE,CAAC;IAC3F,wFAAwF;IACxF,QAAQ,EAAE;QAAE,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,MAAM,EAAE,mBAAmB,EAAE,CAAA;KAAE,CAAC;IACpE,cAAc,EAAE,MAAM,CAAC;CACxB;AAuPD,wBAAsB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,OAAO,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAY9F"}

package/dist/commands/init.js

@@ -3,11 +3,12 @@ import { mkdir, readFile } from 'node:fs/promises';
 import path from 'node:path';
 import { parse as parseYaml } from 'yaml';
 import { z } from 'zod';
-import { DEFAULT_ADAPTERS, DEFAULT_ARCHIVE_PATH, DEFAULT_ROLLUP_STALE_DAYS, DEFAULT_CATALOG_PATH, DEFAULT_CATALOG_SECTION_MAX_BYTES, DEFAULT_CONVENTIONS_PATH, DEFAULT_DERIVED_PATHS, DEFAULT_DIFF_SIZE_CEILING_LINES, DEFAULT_EXCLUDE_PATHS, DEFAULT_HARD_WALLS, DEFAULT_INBOX_PATH, DEFAULT_TRACKING_PARAMS, DEFAULT_INTERNAL_AUDIENCES, DEFAULT_SKILLS_PATH, DEFAULT_RELATIONS, DEFAULT_GRAPH_SETTINGS, DEFAULT_SESSION_BRANCH_PREFIX, DEFAULT_VISIBILITY_CONTEXT, DEFAULT_VISIBILITY_FIELD_KEY, DEFAULT_WORKSPACES_EXTERNAL, DEFAULT_WORKTREES_PATH, } from '../config/defaults.js';
+import { DEFAULT_ADAPTERS, DEFAULT_ARCHIVE_PATH, DEFAULT_ROLLUP_STALE_DAYS, DEFAULT_CATALOG_PATH, DEFAULT_CATALOG_SECTION_MAX_BYTES, DEFAULT_BASELINE_CONVENTION_FILE_NAME, DEFAULT_CUSTOM_CONVENTION_FILE_NAME, DEFAULT_GUIDANCE_PATH, DEFAULT_DERIVED_PATHS, DEFAULT_DIFF_SIZE_CEILING_LINES, DEFAULT_EXCLUDE_PATHS, DEFAULT_HARD_WALLS, DEFAULT_INBOX_PATH, DEFAULT_TRACKING_PARAMS, DEFAULT_INTERNAL_AUDIENCES, DEFAULT_MISSION_PATH, DEFAULT_SKILLS_PATH, DEFAULT_RELATIONS, DEFAULT_GRAPH_SETTINGS, DEFAULT_SESSION_BRANCH_PREFIX, DEFAULT_VISIBILITY_CONTEXT, DEFAULT_VISIBILITY_FIELD_KEY, DEFAULT_WORKSPACES_EXTERNAL, DEFAULT_WORKTREES_PATH, } from '../config/defaults.js';
 import { configPathFor, readConfig } from '../config/load.js';
 import { renderStoreConfig } from '../config/render.js';
 import { SUPPORTED_SCHEMA_VERSION, TaxonomyLayerSchema } from '../config/schema.js';
-import { buildAgentsCanonicalSection, buildAgentsCaptureSection, buildAgentsConventionsSection, buildAgentsLegRoutingSection, buildAgentsPlacementSection, agentsMdPath, } from '../core/agents-doc.js';
+import { buildAgentsCanonicalSection, buildAgentsCaptureSection, buildAgentsConventionsSection, buildAgentsLegRoutingSection, buildAgentsMissionSection, buildAgentsPlacementSection, agentsMdPath, } from '../core/agents-doc.js';
+import { seedCustomConventionFile, syncBaselineConvention } from '../core/convention-doc.js';
 import { syncShippedSkills } from '../core/skills.js';
 import { reconcileStore, WORKTREES_GITIGNORE_FENCE } from '../core/reconcile.js';
 import { isInteractive } from '../core/env.js';
@@ -67,6 +68,23 @@ async function safeCurrentBranch(env, root) {
         return null;
     }
 }
+/**
+ * compose-store-guidance-documents (context-organize delta): seeded once, at
+ * fresh init, so `ctxr rollup write`/`ctxr rollup stale` have a file to
+ * operate on from the start — an unwritten seed reports stale on elapsed
+ * time alone (`checkMissionStaleness`), which is the correct "write your
+ * first mission" signal, not a failure. Scoped to fresh init only: an
+ * existing store that opts in later by hand creates its own file, exactly
+ * as the pre-existing opt-in mechanism already required before this change.
+ */
+async function seedMissionDocument(root, missionPath) {
+    const target = path.join(root, missionPath);
+    if (existsSync(target))
+        return null;
+    await mkdir(path.dirname(target), { recursive: true });
+    await writeFileAtomic(target, '---\ntitle: Mission\n---\n# Mission\n');
+    return missionPath;
+}
 async function runInitCore(env, flags) {
     const root = resolveRootForInit(env, flags);
     await mkdir(root, { recursive: true });
@@ -132,8 +150,8 @@ async function runInitCore(env, flags) {
         catalog: { path: DEFAULT_CATALOG_PATH, section_max_bytes: DEFAULT_CATALOG_SECTION_MAX_BYTES },
         disclosure: { internal_audiences: [...DEFAULT_INTERNAL_AUDIENCES], hard_walls: [...DEFAULT_HARD_WALLS], leak_markers: {} },
         ingest: { inbox_path: DEFAULT_INBOX_PATH, tracking_params: [...DEFAULT_TRACKING_PARAMS] },
-        organize: { archive_path: DEFAULT_ARCHIVE_PATH, rollup_stale_days: DEFAULT_ROLLUP_STALE_DAYS },
-        harness: { skills_path: DEFAULT_SKILLS_PATH, conventions_path: DEFAULT_CONVENTIONS_PATH },
+        organize: { archive_path: DEFAULT_ARCHIVE_PATH, rollup_stale_days: DEFAULT_ROLLUP_STALE_DAYS, mission_path: DEFAULT_MISSION_PATH },
+        harness: { skills_path: DEFAULT_SKILLS_PATH, guidance_path: DEFAULT_GUIDANCE_PATH },
         adapters: [...DEFAULT_ADAPTERS],
     };
     // Round-trips through the schema internally; throws before any byte is written if it doesn't.
@@ -142,12 +160,26 @@ async function runInitCore(env, flags) {
     const gitignorePath = path.join(root, '.gitignore');
     await upsertFencedRegionInFile(gitignorePath, DERIVED_GITIGNORE_FENCE, config.derived.paths);
     await upsertFencedRegionInFile(gitignorePath, WORKTREES_GITIGNORE_FENCE, [config.session.worktrees_path]);
+    // Guidance-directory content must be current BEFORE the AGENTS.md sections
+    // that read it (mission, store conventions) are built below.
+    await syncBaselineConvention(root, config);
+    const customConventionSeeded = await seedCustomConventionFile(root, config);
+    const missionSeeded = config.organize.mission_path ? await seedMissionDocument(root, config.organize.mission_path) : null;
+    // harness-portability spec "Generated sections render in a fixed order":
+    // called in that order directly — a fresh AGENTS.md has no existing fences
+    // to reorder, so call order alone determines the file's section order.
+    await buildAgentsCanonicalSection(root, config);
+    await buildAgentsMissionSection(root, config);
     await buildAgentsLegRoutingSection(root, config);
     await buildAgentsCaptureSection(root, config);
     await buildAgentsPlacementSection(root, config);
     const skillFilesCreated = await syncShippedSkills(root, config);
-    await buildAgentsCanonicalSection(root, config);
     await buildAgentsConventionsSection(root, config);
+    const guidanceFilesCreated = [
+        path.join(config.harness.guidance_path, DEFAULT_BASELINE_CONVENTION_FILE_NAME),
+        ...(customConventionSeeded.created ? [path.join(config.harness.guidance_path, DEFAULT_CUSTOM_CONVENTION_FILE_NAME)] : []),
+        ...(missionSeeded ? [missionSeeded] : []),
+    ].map((p) => p.split(path.sep).join('/'));
     // One directory per configured layer with a .gitkeep — makes Zettelkasten's
     // zero-layer shape visibly different from PARA's at a glance. This is a
     // deliberate addition beyond tasks.md's literal text (0.6), noted here
@@ -165,13 +197,29 @@ async function runInitCore(env, flags) {
     const { changed: hookFiles } = await installHooks(root, defaultBranch);
     await configureHooksPath(env.git, root);
     const relConfigPath = path.relative(root, configPath);
-    await addPaths(env.git, root, [relConfigPath, '.gitignore', path.relative(root, agentsMdPath(root)), ...layerGitkeeps, ...skillFilesCreated, ...hookFiles]);
+    await addPaths(env.git, root, [
+        relConfigPath,
+        '.gitignore',
+        path.relative(root, agentsMdPath(root)),
+        ...layerGitkeeps,
+        ...skillFilesCreated,
+        ...guidanceFilesCreated,
+        ...hookFiles,
+    ]);
     const commitSha = await commitIfStaged(env.git, root, { kind: 'bootstrap' }, 'chore: initialize contexture store');
     return {
         data: {
             root,
             already_initialized: false,
-            created: [relConfigPath, '.gitignore', path.relative(root, agentsMdPath(root)), ...layerGitkeeps, ...skillFilesCreated, ...hookFiles],
+            created: [
+                relConfigPath,
+                '.gitignore',
+                path.relative(root, agentsMdPath(root)),
+                ...layerGitkeeps,
+                ...skillFilesCreated,
+                ...guidanceFilesCreated,
+                ...hookFiles,
+            ],
             unchanged: [],
             git: { repository_created: !repositoryAlreadyExists, commit: commitSha, default_branch: defaultBranch },
             taxonomy: {

package/dist/commands/init.js.map

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package/dist/commands/rollup-write.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"rollup-write.d.ts","sourceRoot":"","sources":["../../src/commands/rollup-write.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAC1E,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,gBAAgB,CAAC;AAO7C,OAAO,EAAmB,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAClE,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAE9C,eAAO,MAAM,QAAQ,EAAE,eAAuC,CAAC;AAE/D,OAAO,EAAE,YAAY,EAAE,CAAC;AAExB,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;CAClB;AAOD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAsB,OAAO,CAC3B,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,gBAAgB,GACtB,OAAO,CAAC,cAAc,CAAC,eAAe,CAAC,CAAC,CAiC1C"}

package/dist/commands/rollup-write.js

@@ -1,6 +1,7 @@
 import { existsSync } from 'node:fs';
 import { readFile } from 'node:fs/promises';
 import path from 'node:path';
+import { buildAgentsMissionSection } from '../core/agents-doc.js';
 import { NoteNotFoundError } from '../core/errors.js';
 import { ExitCode } from '../core/exit-codes.js';
 import { writeFileAtomic } from '../core/fs/atomic.js';
@@ -45,6 +46,13 @@ export async function execute(env, store, flags) {
         const note = await parseNote(absolutePath, relativePath);
         const frontmatter = { ...note.frontmatter, [ROLLED_UP_FIELD]: env.now().toISOString() };
         await writeFileAtomic(absolutePath, renderNoteText(frontmatter, note.body));
+        // inline-conventions-and-mission: a write to the configured mission path
+        // also refreshes AGENTS.md's inlined Mission section in this same
+        // operation, so the two never drift apart between this write and the
+        // store's next `ctxr update`.
+        if (relativePath === store.config.organize.mission_path) {
+            await buildAgentsMissionSection(store.root, store.config);
+        }
     }
     return {
         exitCode: ExitCode.Ok,

package/dist/commands/rollup-write.js.map

@@ -1 +1 @@
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+{"version":3,"file":"rollup-write.js","sourceRoot":"","sources":["../../src/commands/rollup-write.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAC5C,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,yBAAyB,EAAE,MAAM,uBAAuB,CAAC;AAGlE,OAAO,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACtD,OAAO,EAAE,QAAQ,EAAE,MAAM,uBAAuB,CAAC;AACjD,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,wBAAwB,EAAE,MAAM,6BAA6B,CAAC;AACvE,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AACzD,OAAO,EAAE,eAAe,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAGlE,MAAM,CAAC,MAAM,QAAQ,GAAoB,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC;AAE/D,OAAO,EAAE,YAAY,EAAE,CAAC;AAYxB,SAAS,mBAAmB,CAAC,GAAW,EAAE,KAAY,EAAE,SAAiB;IACvE,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAC3F,OAAO,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AACvE,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,MAAM,CAAC,KAAK,UAAU,OAAO,CAC3B,GAAW,EACX,KAAY,EACZ,KAAuB;IAEvB,MAAM,YAAY,GAAG,mBAAmB,CAAC,GAAG,EAAE,KAAK,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;IACnE,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,YAAY,CAAC,CAAC;IACzD,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC;QAAE,MAAM,IAAI,iBAAiB,CAAC,YAAY,CAAC,CAAC;IAEzE,MAAM,WAAW,GAAG,MAAM,QAAQ,CAAC,KAAK,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC;IAC9D,MAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC1C,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC,IAAI,SAAS,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,KAAK,EAAE;QAAE,SAAS,CAAC,GAAG,EAAE,CAAC;IAEpF,MAAM,EAAE,OAAO,EAAE,GAAG,MAAM,wBAAwB,CAAC,YAAY,EAAE,YAAY,EAAE,SAAS,CAAC,CAAC;IAE1F,IAAI,OAAO,EAAE,CAAC;QACZ,MAAM,IAAI,GAAG,MAAM,SAAS,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC;QACzD,MAAM,WAAW,GAAG,EAAE,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC,eAAe,CAAC,EAAE,GAAG,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,CAAC;QACxF,MAAM,eAAe,CAAC,YAAY,EAAE,cAAc,CAAC,WAAW,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;QAE5E,yEAAyE;QACzE,kEAAkE;QAClE,qEAAqE;QACrE,8BAA8B;QAC9B,IAAI,YAAY,KAAK,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,YAAY,EAAE,CAAC;YACxD,MAAM,yBAAyB,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;QAC5D,CAAC;IACH,CAAC;IAED,OAAO;QACL,QAAQ,EAAE,QAAQ,CAAC,EAAE;QACrB,IAAI,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,OAAO,EAAE;QACrC,QAAQ,EAAE,EAAE;QACZ,YAAY,EAAE,OAAO,CAAC,CAAC,CAAC,wBAAwB,YAAY,IAAI,CAAC,CAAC,CAAC,cAAc,YAAY,uBAAuB;QACpH,SAAS,EAAE,KAAK,CAAC,IAAI;QACrB,aAAa,EAAE,KAAK,CAAC,MAAM,CAAC,cAAc;KAC3C,CAAC;AACJ,CAAC"}

package/dist/commands/verify.d.ts

@@ -16,8 +16,15 @@ export interface VerifyData {
  * harness-portability spec: exercises core store operations "from an
  * environment with no harness-specific state present" — nothing here reads
  * any harness-specific file or env var, so the property under test holds
- * by construction; this command just runs the three named operations in
- * order and stops at the first failure, naming it (never running the rest).
+ * by construction; this command runs each named operation in order and
+ * stops at the first failure, naming it (never running the rest).
+ *
+ * inline-conventions-and-mission: the old "every skill has an index entry"
+ * check is gone along with the index itself. Portability is now verified by
+ * confirming every managed AGENTS.md section is present, that its inlined
+ * conventions/mission content matches the source files on disk (the same
+ * drift `ctxr doctor` checks — see `integrity-checks.ts`), and that a skill
+ * is reachable by path at the configured skills path.
  */
 export declare function execute(store: Store, _flags?: VerifyFlags): Promise<CommandOutcome<VerifyData>>;
 //# sourceMappingURL=verify.d.ts.map

package/dist/commands/verify.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"verify.d.ts","sourceRoot":"","sources":["../../src/commands/verify.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAoB1E,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,kBAAkB,CAAC;AAE9C,eAAO,MAAM,QAAQ,EAAE,eAAuC,CAAC;AAE/D,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,gBAAgB;IAC/B,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,GAAG,MAAM,CAAC;IACxB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,UAAU;IACzB,KAAK,EAAE,gBAAgB,EAAE,CAAC;CAC3B;AAWD;;;;;;;;;;;;;GAaG;AACH,wBAAsB,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,GAAE,WAAgB,GAAG,OAAO,CAAC,cAAc,CAAC,UAAU,CAAC,CAAC,CA8FzG"}

package/dist/commands/verify.js

@@ -1,23 +1,36 @@
 import { readFile } from 'node:fs/promises';
 import path from 'node:path';
-import { agentsMdPath } from '../core/agents-doc.js';
+import { AGENTS_MD_CANONICAL_FENCE, AGENTS_MD_CAPTURE_FENCE, AGENTS_MD_CONVENTIONS_FENCE, AGENTS_MD_LEG_ROUTING_FENCE, AGENTS_MD_PLACEMENT_FENCE, agentsMdPath, checkAgentsMdDrift, } from '../core/agents-doc.js';
 import { readCatalogSection } from '../core/catalog/build.js';
 import { catalogSectionsFor } from '../core/catalog/model.js';
 import { ExitCode } from '../core/exit-codes.js';
+import { readFencedRegionFromFile } from '../core/fs/fenced-region.js';
 import { buildGraphFromNotes, graphBuildOptions } from '../core/graph/model.js';
 import { writeGraph } from '../core/graph/persist.js';
 import { listNotes } from '../core/notes/list.js';
 import { scanSkills } from '../core/skills.js';
 export const requires = { store: 'required' };
-function skillIndexEntry(name, relativePath) {
-    return `[${name}](${relativePath})`;
-}
+/** Every section that renders unconditionally — Mission is checked separately since it's optional. */
+const ALWAYS_PRESENT_SECTIONS = [
+    { label: 'store fundamentals', fence: AGENTS_MD_CANONICAL_FENCE },
+    { label: 'retrieval routing', fence: AGENTS_MD_LEG_ROUTING_FENCE },
+    { label: 'capture', fence: AGENTS_MD_CAPTURE_FENCE },
+    { label: 'placement', fence: AGENTS_MD_PLACEMENT_FENCE },
+    { label: 'store conventions', fence: AGENTS_MD_CONVENTIONS_FENCE },
+];
 /**
  * harness-portability spec: exercises core store operations "from an
  * environment with no harness-specific state present" — nothing here reads
  * any harness-specific file or env var, so the property under test holds
- * by construction; this command just runs the three named operations in
- * order and stops at the first failure, naming it (never running the rest).
+ * by construction; this command runs each named operation in order and
+ * stops at the first failure, naming it (never running the rest).
+ *
+ * inline-conventions-and-mission: the old "every skill has an index entry"
+ * check is gone along with the index itself. Portability is now verified by
+ * confirming every managed AGENTS.md section is present, that its inlined
+ * conventions/mission content matches the source files on disk (the same
+ * drift `ctxr doctor` checks — see `integrity-checks.ts`), and that a skill
+ * is reachable by path at the configured skills path.
  */
 export async function execute(store, _flags = {}) {
     const steps = [];
@@ -51,33 +64,43 @@ export async function execute(store, _flags = {}) {
         });
         return finish(store, steps);
     }
-    // 3. Follow one skill via the AGENTS.md index: every canonical skill
-    // must have an index entry, and at least one must be readable.
-    let agentsMdContent;
-    try {
-        agentsMdContent = await readFile(agentsMdPath(store.root), 'utf8');
+    // 3. Every managed AGENTS.md section is present.
+    for (const { label, fence } of ALWAYS_PRESENT_SECTIONS) {
+        const region = await readFencedRegionFromFile(agentsMdPath(store.root), fence);
+        if (region.length === 0) {
+            steps.push({
+                operation: `AGENTS.md section: ${label}`,
+                status: 'fail',
+                detail: `The "${label}" section is missing from AGENTS.md — run \`ctxr update\`.`,
+            });
+            return finish(store, steps);
+        }
     }
-    catch (err) {
+    steps.push({ operation: 'AGENTS.md sections present', status: 'pass' });
+    // 4. Inlined conventions/mission content matches its source files.
+    const drift = await checkAgentsMdDrift(store.root, store.config);
+    if (drift.driftedConventions.length > 0) {
         steps.push({
-            operation: 'skill index (AGENTS.md)',
+            operation: 'inlined conventions match source',
             status: 'fail',
-            detail: err instanceof Error ? err.message : String(err),
+            detail: `AGENTS.md's "Store conventions" section no longer matches: ${drift.driftedConventions.join(', ')} — run \`ctxr update\`.`,
         });
         return finish(store, steps);
     }
-    // entry-doc-generation spec: the index must cover every skill actually on
-    // disk — shipped seeds and operator-added files alike.
-    const skills = await scanSkills(store.root, store.config);
-    for (const skill of skills) {
-        if (!agentsMdContent.includes(skillIndexEntry(skill.title, skill.path))) {
+    steps.push({ operation: 'inlined conventions match source', status: 'pass' });
+    if (store.config.organize.mission_path) {
+        if (drift.driftedMission) {
             steps.push({
-                operation: `skill index entry for "${skill.title}"`,
+                operation: 'inlined mission matches source',
                 status: 'fail',
-                detail: `AGENTS.md's skill index has no entry for "${skill.title}".`,
+                detail: `AGENTS.md's "Mission" section no longer matches "${drift.driftedMission}" — run \`ctxr update\`.`,
             });
             return finish(store, steps);
         }
+        steps.push({ operation: 'inlined mission matches source', status: 'pass' });
     }
+    // 6. Follow one skill by path at the configured skills path.
+    const skills = await scanSkills(store.root, store.config);
     const first = skills[0];
     if (!first) {
         steps.push({
@@ -89,11 +112,11 @@ export async function execute(store, _flags = {}) {
     }
     try {
         await readFile(path.join(store.root, first.path), 'utf8');
-        steps.push({ operation: `follow skill "${first.title}"`, status: 'pass' });
+        steps.push({ operation: `follow skill "${first.title}" by path`, status: 'pass' });
     }
     catch (err) {
         steps.push({
-            operation: `follow skill "${first.title}"`,
+            operation: `follow skill "${first.title}" by path`,
             status: 'fail',
             detail: err instanceof Error ? err.message : String(err),
         });

package/dist/commands/verify.js.map

@@ -1 +1 @@
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package/dist/config/defaults.d.ts

@@ -36,8 +36,24 @@ export declare const DEFAULT_DERIVED_PATHS: readonly ['.contexture/cache/'];
  * driven by another harness points this at that harness's skills directory.
  */
 export declare const DEFAULT_SKILLS_PATH = ".claude/skills/";
-/** harness-portability spec (entry-doc-generation): operator-authored convention docs, indexed by AGENTS.md. */
-export declare const DEFAULT_CONVENTIONS_PATH = ".contexture/conventions/";
+/**
+ * harness-portability spec: the guidance directory holding contexture's
+ * shipped baseline convention file, the operator's own convention files
+ * (inlined into AGENTS.md's "Store conventions" section — see
+ * agents-doc.ts, from inline-conventions-and-mission), and (per
+ * context-organize) the mission document.
+ */
+export declare const DEFAULT_GUIDANCE_PATH = ".contexture/guidance/";
+/** The shipped, contexture-owned baseline convention — never hand-edited; refreshed by `ctxr update` like a skill copy. */
+export declare const DEFAULT_BASELINE_CONVENTION_FILE_NAME = "baseline-convention.md";
+/** The operator-authored convention file seeded at init. */
+export declare const DEFAULT_CUSTOM_CONVENTION_FILE_NAME = "custom-convention.md";
+/** context-organize spec: the store's standing current-state document's filename, under the guidance directory. */
+export declare const DEFAULT_MISSION_FILE_NAME = "mission.md";
+/** context-organize spec: `organize.mission_path`'s shipped default — every store gets a mission document from `init` onward, seeded there. */
+export declare const DEFAULT_MISSION_PATH = ".contexture/guidance/mission.md";
+/** store-integrity spec: AGENTS.md's inlined "Store conventions" section's size ceiling when `harness.convention_max_bytes` is unset. */
+export declare const DEFAULT_CONVENTION_MAX_BYTES: number;
 /** Paths excluded from every retrieval leg by default. */
 export declare const DEFAULT_EXCLUDE_PATHS: readonly ['.contexture/'];
 /** graph-context-document spec: no relation vocabulary by default — no typed edges until a store declares names. */

package/dist/config/defaults.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAEtE;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,4BAA4B,SAAS,CAAC;AAEnD;;;;;;GAMG;AACH,eAAO,MAAM,8BAA8B,UAAU,CAAC;AAEtD,gFAAgF;AAChF,eAAO,MAAM,0BAA0B,YAAY,CAAC;AAEpD;;;;;GAKG;AACH,eAAO,MAAM,qBAAqB,YAAI,oBAAoB,CAAU,CAAC;AAErE;;;;;GAKG;AACH,eAAO,MAAM,mBAAmB,oBAAoB,CAAC;AAErD;;;;;;GAMG;AACH,eAAO,MAAM,qBAAqB,0BAA0B,CAAC;AAE7D,2HAA2H;AAC3H,eAAO,MAAM,qCAAqC,2BAA2B,CAAC;AAE9E,4DAA4D;AAC5D,eAAO,MAAM,mCAAmC,yBAAyB,CAAC;AAE1E,mHAAmH;AACnH,eAAO,MAAM,yBAAyB,eAAe,CAAC;AAEtD,+IAA+I;AAC/I,eAAO,MAAM,oBAAoB,oCAAyD,CAAC;AAE3F,yIAAyI;AACzI,eAAO,MAAM,4BAA4B,QAAY,CAAC;AAEtD,0DAA0D;AAC1D,eAAO,MAAM,qBAAqB,YAAI,cAAc,CAAU,CAAC;AAE/D,oHAAoH;AACpH,eAAO,MAAM,iBAAiB,EAAE,SAAS,MAAM,EAAO,CAAC;AAEvD,8HAA8H;AAC9H,eAAO,MAAM,sBAAsB;IACjC,aAAa;IACb,OAAO;IACP,UAAU;IACV,sBAAsB,EAAQ,MAAM,EAAE;CACvC,CAAC;AAEF,wFAAwF;AACxF,eAAO,MAAM,sBAAsB,gBAAgB,CAAC;AAEpD,8FAA8F;AAC9F,eAAO,MAAM,6BAA6B,aAAa,CAAC;AAExD,uGAAuG;AACvG,eAAO,MAAM,2BAA2B,QAAQ,CAAC;AAEjD,oFAAoF;AACpF,eAAO,MAAM,+BAA+B,OAAO,CAAC;AAEpD,2HAA2H;AAC3H,eAAO,MAAM,oBAAoB,yBAAyB,CAAC;AAE3D,6GAA6G;AAC7G,eAAO,MAAM,iCAAiC,QAAY,CAAC;AAE3D,8JAA8J;AAC9J,eAAO,MAAM,0BAA0B,EAAE,SAAS,MAAM,EAAO,CAAC;AAChE,eAAO,MAAM,kBAAkB,EAAE,SAAS,cAAc,EAAO,CAAC;AAEhE,uGAAuG;AACvG,eAAO,MAAM,kBAAkB,WAAW,CAAC;AAE3C,gJAAgJ;AAChJ,eAAO,MAAM,uBAAuB,UAA6F,CAAC;AAElI,4FAA4F;AAC5F,eAAO,MAAM,oBAAoB,aAAa,CAAC;AAE/C,iHAAiH;AACjH,eAAO,MAAM,yBAAyB,IAAI,CAAC;AAE3C;;;;;GAKG;AACH,eAAO,MAAM,gBAAgB,EAAE,SAAS,kBAAkB,EAGzD,CAAC"}

package/dist/config/defaults.js

@@ -35,8 +35,24 @@ export const DEFAULT_DERIVED_PATHS = ['.contexture/cache/'];
  * driven by another harness points this at that harness's skills directory.
  */
 export const DEFAULT_SKILLS_PATH = '.claude/skills/';
-/** harness-portability spec (entry-doc-generation): operator-authored convention docs, indexed by AGENTS.md. */
-export const DEFAULT_CONVENTIONS_PATH = '.contexture/conventions/';
+/**
+ * harness-portability spec: the guidance directory holding contexture's
+ * shipped baseline convention file, the operator's own convention files
+ * (inlined into AGENTS.md's "Store conventions" section — see
+ * agents-doc.ts, from inline-conventions-and-mission), and (per
+ * context-organize) the mission document.
+ */
+export const DEFAULT_GUIDANCE_PATH = '.contexture/guidance/';
+/** The shipped, contexture-owned baseline convention — never hand-edited; refreshed by `ctxr update` like a skill copy. */
+export const DEFAULT_BASELINE_CONVENTION_FILE_NAME = 'baseline-convention.md';
+/** The operator-authored convention file seeded at init. */
+export const DEFAULT_CUSTOM_CONVENTION_FILE_NAME = 'custom-convention.md';
+/** context-organize spec: the store's standing current-state document's filename, under the guidance directory. */
+export const DEFAULT_MISSION_FILE_NAME = 'mission.md';
+/** context-organize spec: `organize.mission_path`'s shipped default — every store gets a mission document from `init` onward, seeded there. */
+export const DEFAULT_MISSION_PATH = `${DEFAULT_GUIDANCE_PATH}${DEFAULT_MISSION_FILE_NAME}`;
+/** store-integrity spec: AGENTS.md's inlined "Store conventions" section's size ceiling when `harness.convention_max_bytes` is unset. */
+export const DEFAULT_CONVENTION_MAX_BYTES = 32 * 1024;
 /** Paths excluded from every retrieval leg by default. */
 export const DEFAULT_EXCLUDE_PATHS = ['.contexture/'];
 /** graph-context-document spec: no relation vocabulary by default — no typed edges until a store declares names. */

package/dist/config/defaults.js.map

@@ -1 +1 @@
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+{"version":3,"file":"defaults.js","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAEA;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,MAAM,4BAA4B,GAAG,MAAM,CAAC;AAEnD;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,8BAA8B,GAAG,OAAO,CAAC;AAEtD,gFAAgF;AAChF,MAAM,CAAC,MAAM,0BAA0B,GAAG,SAAS,CAAC;AAEpD;;;;;GAKG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,oBAAoB,CAAU,CAAC;AAErE;;;;;GAKG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG,iBAAiB,CAAC;AAErD;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,uBAAuB,CAAC;AAE7D,2HAA2H;AAC3H,MAAM,CAAC,MAAM,qCAAqC,GAAG,wBAAwB,CAAC;AAE9E,4DAA4D;AAC5D,MAAM,CAAC,MAAM,mCAAmC,GAAG,sBAAsB,CAAC;AAE1E,mHAAmH;AACnH,MAAM,CAAC,MAAM,yBAAyB,GAAG,YAAY,CAAC;AAEtD,+IAA+I;AAC/I,MAAM,CAAC,MAAM,oBAAoB,GAAG,GAAG,qBAAqB,GAAG,yBAAyB,EAAE,CAAC;AAE3F,yIAAyI;AACzI,MAAM,CAAC,MAAM,4BAA4B,GAAG,EAAE,GAAG,IAAI,CAAC;AAEtD,0DAA0D;AAC1D,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,cAAc,CAAU,CAAC;AAE/D,oHAAoH;AACpH,MAAM,CAAC,MAAM,iBAAiB,GAAsB,EAAE,CAAC;AAEvD,8HAA8H;AAC9H,MAAM,CAAC,MAAM,sBAAsB,GAAG;IACpC,aAAa,EAAE,CAAC;IAChB,OAAO,EAAE,CAAC;IACV,UAAU,EAAE,EAAE;IACd,sBAAsB,EAAE,EAAc;CACvC,CAAC;AAEF,wFAAwF;AACxF,MAAM,CAAC,MAAM,sBAAsB,GAAG,aAAa,CAAC;AAEpD,8FAA8F;AAC9F,MAAM,CAAC,MAAM,6BAA6B,GAAG,UAAU,CAAC;AAExD,uGAAuG;AACvG,MAAM,CAAC,MAAM,2BAA2B,GAAG,KAAK,CAAC;AAEjD,oFAAoF;AACpF,MAAM,CAAC,MAAM,+BAA+B,GAAG,IAAI,CAAC;AAEpD,2HAA2H;AAC3H,MAAM,CAAC,MAAM,oBAAoB,GAAG,sBAAsB,CAAC;AAE3D,6GAA6G;AAC7G,MAAM,CAAC,MAAM,iCAAiC,GAAG,EAAE,GAAG,IAAI,CAAC;AAE3D,8JAA8J;AAC9J,MAAM,CAAC,MAAM,0BAA0B,GAAsB,EAAE,CAAC;AAChE,MAAM,CAAC,MAAM,kBAAkB,GAA8B,EAAE,CAAC;AAEhE,uGAAuG;AACvG,MAAM,CAAC,MAAM,kBAAkB,GAAG,QAAQ,CAAC;AAE3C,gJAAgJ;AAChJ,MAAM,CAAC,MAAM,uBAAuB,GAAG,CAAC,YAAY,EAAE,YAAY,EAAE,cAAc,EAAE,UAAU,EAAE,aAAa,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAC;AAElI,4FAA4F;AAC5F,MAAM,CAAC,MAAM,oBAAoB,GAAG,UAAU,CAAC;AAE/C,iHAAiH;AACjH,MAAM,CAAC,MAAM,yBAAyB,GAAG,CAAC,CAAC;AAE3C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAkC;IAC7D,EAAE,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE;IAC/B,EAAE,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,oBAAoB,EAAE;CAClD,CAAC"}

package/dist/config/schema.d.ts

@@ -16,8 +16,13 @@ import { z } from 'zod';
  * `harness.procedures_path` -> `harness.skills_path`. HarnessSchema's
  * transform accepts the old key through this version so an unmigrated
  * store still loads (see schema.ts's HarnessSchema comment).
+ *
+ * Bumped to 4 by the conventions-to-guidance key rename migration
+ * (rename-conventions-path-to-guidance-path, 0004-rename-conventions-path-to-guidance-path):
+ * `harness.conventions_path` -> `harness.guidance_path`. HarnessSchema's
+ * transform accepts the old key through this version too, the same way.
  */
-export declare const SUPPORTED_SCHEMA_VERSION = 3;
+export declare const SUPPORTED_SCHEMA_VERSION = 4;
 export declare const TaxonomyLayerSchema: z.ZodObject<{
     name: z.ZodString;
     path: z.ZodString;
@@ -133,14 +138,19 @@ export declare const StoreConfigSchema: z.ZodObject<{
     harness: z.ZodPipe<z.ZodObject<{
         skills_path: z.ZodOptional<z.ZodString>;
         procedures_path: z.ZodOptional<z.ZodString>;
-        conventions_path: z.ZodDefault<z.ZodString>;
+        guidance_path: z.ZodOptional<z.ZodString>;
+        conventions_path: z.ZodOptional<z.ZodString>;
+        convention_max_bytes: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>, z.ZodTransform<{
         skills_path: string;
-        conventions_path: string;
+        guidance_path: string;
+        convention_max_bytes?: number | undefined;
     }, {
         skills_path?: string | undefined;
         procedures_path?: string | undefined;
-        conventions_path: string;
+        guidance_path?: string | undefined;
+        conventions_path?: string | undefined;
+        convention_max_bytes?: number | undefined;
     }>>;
     adapters: z.ZodArray<z.ZodObject<{
         id: z.ZodString;

package/dist/config/schema.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB;;;;GAIG;AACH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,wBAAwB,IAAI,CAAC;AAE1C,eAAO,MAAM,mBAAmB;;;;iBAI9B,CAAC;AAqCH;;;;;;GAMG;AACH,QAAA,MAAM,mBAAmB;;;;;iBAKvB,CAAC;AA2CH;;;;;GAKG;AACH,QAAA,MAAM,cAAc;;;;;;;;;iBAQlB,CAAC;AA0EH,QAAA,MAAM,wBAAwB;;;;;;;iBAI5B,CAAC;AAEH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAkBd,CAAC;AAEjB,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AAC5D,MAAM,MAAM,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC"}
+{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB;;;;GAIG;AACH;;;;;;;;;;;;;;;;;GAiBG;AACH,eAAO,MAAM,wBAAwB,IAAI,CAAC;AAE1C,eAAO,MAAM,mBAAmB;;;;iBAI9B,CAAC;AAqCH;;;;;;GAMG;AACH,QAAA,MAAM,mBAAmB;;;;;iBAKvB,CAAC;AA2CH;;;;;GAKG;AACH,QAAA,MAAM,cAAc;;;;;;;;;iBAQlB,CAAC;AAyGH,QAAA,MAAM,wBAAwB;;;;;;;iBAI5B,CAAC;AAEH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAkBd,CAAC;AAEjB,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AAC5D,MAAM,MAAM,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC"}

package/dist/config/schema.js

@@ -16,8 +16,13 @@ import { z } from 'zod';
  * `harness.procedures_path` -> `harness.skills_path`. HarnessSchema's
  * transform accepts the old key through this version so an unmigrated
  * store still loads (see schema.ts's HarnessSchema comment).
+ *
+ * Bumped to 4 by the conventions-to-guidance key rename migration
+ * (rename-conventions-path-to-guidance-path, 0004-rename-conventions-path-to-guidance-path):
+ * `harness.conventions_path` -> `harness.guidance_path`. HarnessSchema's
+ * transform accepts the old key through this version too, the same way.
  */
-export const SUPPORTED_SCHEMA_VERSION = 3;
+export const SUPPORTED_SCHEMA_VERSION = 4;
 export const TaxonomyLayerSchema = z.object({
     name: z.string().min(1),
     path: z.string().min(1),
@@ -148,23 +153,45 @@ const OrganizeSchema = z.object({
     mission_path: z.string().min(1).optional(),
 });
 /**
- * harness-portability spec: the portable skill pack and operator convention
- * docs AGENTS.md's indexes point into.
+ * harness-portability spec: the portable skill pack and the guidance
+ * documents (a shipped baseline convention file, the operator's own
+ * convention files, and the mission document) AGENTS.md's generated
+ * sections read from and inline.
  *
  * rename-procedures-to-skills migration (0003): `skills_path` is the
  * current key; `procedures_path` is its pre-migration name, accepted here
  * so a store on schema 2 still loads (with a message pointing at `ctxr
  * migrate`, not a raw shape-validation error) rather than failing the
- * moment this schema starts requiring the new key. The transform below is
- * the ONLY place either spelling is read — every other consumer in the
- * codebase sees `config.harness.skills_path` and nothing else, so the old
- * key never leaks past config loading.
+ * moment this schema starts requiring the new key.
+ *
+ * rename-conventions-path-to-guidance-path migration (0004): `guidance_path`
+ * is the current key; `conventions_path` is its pre-migration name. Unlike
+ * `skills_path`, this key always had a workable default, so an unmigrated
+ * store loads silently onto that default rather than erroring — `ctxr
+ * migrate` moves the directory and rewrites the key, but nothing breaks if
+ * it hasn't run yet.
+ *
+ * The transform below is the ONLY place any of these spellings is read —
+ * every other consumer in the codebase sees `config.harness.skills_path` /
+ * `config.harness.guidance_path` and nothing else, so no old key ever leaks
+ * past config loading.
  */
 const HarnessSchema = z
     .object({
     skills_path: z.string().min(1).optional(),
     procedures_path: z.string().min(1).optional(),
-    conventions_path: z.string().min(1).default('.contexture/conventions/'),
+    guidance_path: z.string().min(1).optional(),
+    conventions_path: z.string().min(1).optional(),
+    /**
+     * compose-store-guidance-documents design.md D6: a size ceiling on
+     * AGENTS.md's inlined "Store conventions" section, guarding against
+     * unbounded growth now that its content is inlined rather than indexed
+     * (inline-conventions-and-mission). Optional with no schema-level
+     * default (falls back to `DEFAULT_CONVENTION_MAX_BYTES` at the one
+     * doctor check that reads it) so this stays purely additive — no
+     * existing `StoreConfig` object literal needs updating to compile.
+     */
+    convention_max_bytes: z.number().int().positive().optional(),
 })
     .transform((value, ctx) => {
     const skillsPath = value.skills_path ?? value.procedures_path;
@@ -176,7 +203,16 @@ const HarnessSchema = z
         });
         return z.NEVER;
     }
-    return { skills_path: skillsPath, conventions_path: value.conventions_path };
+    const guidancePath = value.guidance_path ?? value.conventions_path ?? '.contexture/guidance/';
+    // Spread, not a plain key, so the output type keeps `convention_max_bytes`
+    // genuinely optional (`key?: number`) rather than always-present-but-possibly-undefined
+    // (`key: number | undefined`) — the latter would require every existing
+    // `StoreConfig` object literal in the codebase to add the key just to compile.
+    return {
+        skills_path: skillsPath,
+        guidance_path: guidancePath,
+        ...(value.convention_max_bytes !== undefined ? { convention_max_bytes: value.convention_max_bytes } : {}),
+    };
 });
 /**
  * adapters spec: the one declared-registration mechanism shared by every