ctxr-cli 0.32.0 → 0.34.0

package/dist/core/notes/list.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../../src/core/notes/list.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAI1D,+DAA+D;AAC/D,MAAM,WAAW,SAAS;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,IAAI;IACnB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,CAAC;IACjD,IAAI,EAAE,MAAM,CAAC;CACd;AAmCD;;;;;GAKG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAEnD,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAmBjE;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,WAAW,GAAG,CAAC,YAAY,EAAE,MAAM,KAAK,OAAO,CAEpF;AAED,8EAA8E;AAC9E,wBAAgB,cAAc,CAAC,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAEjF;AA8CD;;;;;;;;;;;GAWG;AACH,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAM1F;AAED,wGAAwG;AACxG,wBAAsB,SAAS,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,GAAE,SAAc,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAQ9G"}
+{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../../src/core/notes/list.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAK1D,+DAA+D;AAC/D,MAAM,WAAW,SAAS;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,IAAI;IACnB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,CAAC;IACjD,IAAI,EAAE,MAAM,CAAC;CACd;AAmCD;;;;;GAKG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAEnD,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAuBjE;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,WAAW,GAAG,CAAC,YAAY,EAAE,MAAM,KAAK,OAAO,CAEpF;AAED,8EAA8E;AAC9E,wBAAgB,cAAc,CAAC,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAEjF;AA8CD;;;;;;;;;;;GAWG;AACH,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAM1F;AAED,wGAAwG;AACxG,wBAAsB,SAAS,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,GAAE,SAAc,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAQ9G"}

package/dist/core/notes/list.js

@@ -3,6 +3,7 @@ import { readdir } from 'node:fs/promises';
 import path from 'node:path';
 import { configuredAdapters } from '../../adapters/registry.js';
 import { isUnderAnyPrefix } from '../fs/prefix.js';
+import { declaresSharedStores, SHARED_STORES_DIR } from '../shared-stores-location.js';
 import { parseNote } from './parse.js';
 /** Infrastructure directories intrinsic to contexture itself — never configurable content locations. */
 const ALWAYS_SKIP_DIRS = new Set(['.git', '.githooks', '.queue']);
@@ -58,6 +59,10 @@ export function excludedPrefixesFor(config) {
         config.templates.path,
         // standardize-store-operating-guidance: the store log records what happened, never a note.
         config.organize.log_path ?? DEFAULT_LOG_PATH,
+        // mount-shared-stores (D7): mounted stores are their own stores, never this
+        // one's notes. Only when mounts are declared, so a store with an ordinary
+        // `shared/` folder of its own is unchanged.
+        ...(declaresSharedStores(config) ? [SHARED_STORES_DIR] : []),
     ];
 }
 /**

package/dist/core/notes/list.js.map

@@ -1 +1 @@
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+{"version":3,"file":"list.js","sourceRoot":"","sources":["../../../src/core/notes/list.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,MAAM,0BAA0B,CAAC;AAC5D,OAAO,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAC3C,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,kBAAkB,EAAE,MAAM,4BAA4B,CAAC;AAEhE,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AACnD,OAAO,EAAE,oBAAoB,EAAE,iBAAiB,EAAE,MAAM,8BAA8B,CAAC;AACvF,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAcvC,wGAAwG;AACxG,MAAM,gBAAgB,GAAG,IAAI,GAAG,CAAC,CAAC,MAAM,EAAE,WAAW,EAAE,QAAQ,CAAC,CAAC,CAAC;AAElE;;;;;;;;;GASG;AACH,MAAM,iBAAiB,GAAG,IAAI,GAAG,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC;AAEjD;;;;;GAKG;AACH,SAAS,iBAAiB,CAAC,MAAmB;IAC5C,IAAI,CAAC;QACH,OAAO,IAAI,GAAG,CACZ,kBAAkB,CAAC,MAAM,EAAE,oBAAoB,CAAC;aAC7C,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC;aAC3B,MAAM,CAAC,CAAC,IAAI,EAAkB,EAAE,CAAC,IAAI,KAAK,SAAS,CAAC,CACxD,CAAC;IACJ,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,GAAG,EAAE,CAAC;IACnB,CAAC;AACH,CAAC;AAED;;;;;GAKG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAEnD,MAAM,UAAU,mBAAmB,CAAC,MAAmB;IACrD,OAAO;QACL,GAAG,MAAM,CAAC,SAAS,CAAC,aAAa;QACjC,GAAG,MAAM,CAAC,OAAO,CAAC,KAAK;QACvB,MAAM,CAAC,OAAO,CAAC,cAAc;QAC7B,MAAM,CAAC,OAAO,CAAC,IAAI;QACnB,yFAAyF;QACzF,MAAM,CAAC,OAAO,CAAC,IAAI;QACnB,sFAAsF;QACtF,MAAM,CAAC,OAAO,CAAC,WAAW;QAC1B,MAAM,CAAC,OAAO,CAAC,aAAa;QAC5B,yEAAyE;QACzE,2EAA2E;QAC3E,yEAAyE;QACzE,gEAAgE;QAChE,MAAM,CAAC,SAAS,CAAC,IAAI;QACrB,2FAA2F;QAC3F,MAAM,CAAC,QAAQ,CAAC,QAAQ,IAAI,gBAAgB;QAC5C,4EAA4E;QAC5E,0EAA0E;QAC1E,4CAA4C;QAC5C,GAAG,CAAC,oBAAoB,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;KAC7D,CAAC;AACJ,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAAC,MAAmB;IAC/C,OAAO,aAAa,CAAC,mBAAmB,CAAC,MAAM,CAAC,EAAE,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC;AAC/E,CAAC;AAED,8EAA8E;AAC9E,MAAM,UAAU,cAAc,CAAC,YAAoB,EAAE,MAAmB;IACtE,OAAO,aAAa,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;AAC7C,CAAC;AAED,SAAS,aAAa,CACpB,eAAkC,EAClC,aAAkC;IAElC,OAAO,CAAC,YAAY,EAAE,EAAE;QACtB,MAAM,QAAQ,GAAG,YAAY,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACzC,MAAM,IAAI,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAE,CAAC;QAC5C,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC;YAAE,OAAO,KAAK,CAAC;QACxC,IAAI,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,gBAAgB,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAAE,OAAO,KAAK,CAAC;QACzF,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YAAE,OAAO,KAAK,CAAC;QACpG,OAAO,CAAC,gBAAgB,CAAC,YAAY,EAAE,eAAe,CAAC,CAAC;IAC1D,CAAC,CAAC;AACJ,CAAC;AAED,KAAK,UAAU,IAAI,CACjB,GAAW,EACX,IAAY,EACZ,eAAkC,EAClC,MAAyC,EACzC,OAAiB;IAEjB,IAAI,OAAO,CAAC;IACZ,IAAI,CAAC;QACH,OAAO,GAAG,MAAM,OAAO,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;IACxD,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAK,GAA6B,CAAC,IAAI,KAAK,QAAQ;YAAE,OAAO;QAC7D,MAAM,GAAG,CAAC;IACZ,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QAC5C,MAAM,YAAY,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAE7E,IAAI,KAAK,CAAC,WAAW,EAAE,EAAE,CAAC;YACxB,mFAAmF;YACnF,IAAI,gBAAgB,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAAE,SAAS;YAC/C,IAAI,gBAAgB,CAAC,YAAY,EAAE,eAAe,CAAC;gBAAE,SAAS;YAC9D,MAAM,IAAI,CAAC,QAAQ,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;QAC/D,CAAC;aAAM,IAAI,KAAK,CAAC,MAAM,EAAE,IAAI,MAAM,CAAC,YAAY,CAAC,EAAE,CAAC;YAClD,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;QAC7B,CAAC;IACH,CAAC;AACH,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,SAAiB,EAAE,MAAmB;IACvE,MAAM,WAAW,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;IACrE,MAAM,aAAa,GAAa,EAAE,CAAC;IACnC,MAAM,IAAI,CAAC,WAAW,EAAE,SAAS,EAAE,EAAE,EAAE,aAAa,CAAC,EAAE,EAAE,IAAI,GAAG,EAAE,CAAC,EAAE,aAAa,CAAC,CAAC;IACpF,aAAa,CAAC,IAAI,EAAE,CAAC;IACrB,OAAO,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,YAAY,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,YAAY,CAAC,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC;AACvH,CAAC;AAED,wGAAwG;AACxG,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,SAAiB,EAAE,MAAmB,EAAE,KAAK,GAAc,EAAE;IAC3F,MAAM,aAAa,GAAa,EAAE,CAAC;IACnC,MAAM,eAAe,GAAG,mBAAmB,CAAC,MAAM,CAAC,CAAC;IACpD,MAAM,IAAI,CAAC,SAAS,EAAE,SAAS,EAAE,eAAe,EAAE,aAAa,CAAC,eAAe,EAAE,iBAAiB,CAAC,MAAM,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC;IAC5H,aAAa,CAAC,IAAI,EAAE,CAAC;IAErB,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,WAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC;IAC1H,OAAO,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,YAAY,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,YAAY,CAAC,EAAE,YAAY,CAAC,CAAC,CAAC,CAAC;AAChH,CAAC"}

package/dist/core/reconcile.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"reconcile.d.ts","sourceRoot":"","sources":["../../src/core/reconcile.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAGvD,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAavC,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAS7C,eAAO,MAAM,yBAAyB,8BAA4B,CAAC;AAwBnE,MAAM,WAAW,eAAe;IAC9B,+EAA+E;IAC/E,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,2EAA2E;IAC3E,QAAQ,EAAE,OAAO,EAAE,CAAC;CACrB;AAED;;;;;;;;GAQG;AACH,wBAAsB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,eAAe,CAAC,CA6E7G"}

package/dist/core/reconcile.js

@@ -2,7 +2,7 @@ import path from 'node:path';
 import { DEFAULT_BASELINE_CONVENTIONS_FILE_NAME } from '../config/defaults.js';
 import { CLI_VERSION } from '../version.js';
 import { generateAdapterOutputs } from './adapter-outputs.js';
-import { agentsMdPath, AGENTS_MD_SECTION_ORDER, buildAgentsCanonicalSection, buildAgentsCaptureSection, buildAgentsConventionsSection, buildAgentsGuidanceIndexSection, buildAgentsLegRoutingSection, buildAgentsMissionSection, buildAgentsPlacementSection, } from './agents-doc.js';
+import { agentsMdPath, AGENTS_MD_SECTION_ORDER, buildAgentsCanonicalSection, buildAgentsCaptureSection, buildAgentsConventionsSection, buildAgentsGuidanceIndexSection, buildAgentsSharedStoresSection, buildAgentsLegRoutingSection, buildAgentsMissionSection, buildAgentsPlacementSection, } from './agents-doc.js';
 import { removeManagedBaselineFile } from './convention-doc.js';
 import { removeFencedRegionFromFile, reorderFencedRegionsInFile, upsertFencedRegionInFile } from './fs/fenced-region.js';
 import { bridgeHarnessSkills } from './harness/bridge.js';
@@ -79,6 +79,7 @@ export async function reconcileStore(env, root, config) {
         buildAgentsLegRoutingSection,
         buildAgentsCaptureSection,
         buildAgentsPlacementSection,
+        buildAgentsSharedStoresSection,
         buildAgentsCanonicalSection,
         buildAgentsMissionSection,
         buildAgentsConventionsSection,

package/dist/core/reconcile.js.map

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package/dist/core/retrieval/pass.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"pass.d.ts","sourceRoot":"","sources":["../../../src/core/retrieval/pass.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAI1D,OAAO,EAAiC,KAAK,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAGzF,OAAO,EAAoB,KAAK,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAE/D,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAEzC;;;;;;;;GAQG;AAEH,uFAAuF;AACvF,eAAO,MAAM,aAAa,YAAI,MAAM,EAAE,iBAAiB,EAAE,cAAc,EAAE,UAAU,EAAE,SAAS,EAAE,UAAU,CAAU,CAAC;AACrH,MAAM,MAAM,WAAW,GAAG,CAAC,OAAO,aAAa,CAAC,CAAC,MAAM,CAAC,CAAC;AAEzD,eAAO,MAAM,UAAU,YAAI,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAU,CAAC;AACjE,MAAM,MAAM,SAAS,GAAG,CAAC,OAAO,UAAU,CAAC,CAAC,MAAM,CAAC,CAAC;AAEpD,MAAM,MAAM,IAAI,GAAG,QAAQ,GAAG,SAAS,CAAC;AAExC,MAAM,WAAW,WAAW;IAC1B,QAAQ,EAAE,MAAM,GAAG,SAAS,GAAG,OAAO,GAAG,QAAQ,CAAC;IAClD,KAAK,EAAE,MAAM,CAAC;CACf;AAED,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,IAAI,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,EAAE,CAAC;CAClB;AAED,MAAM,WAAW,aAAa;IAC5B,OAAO,EAAE,WAAW,EAAE,CAAC;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE;QAAE,QAAQ,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,OAAO,CAAA;KAAE,CAAC;IACpF,KAAK,EAAE,YAAY,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC1B,QAAQ,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC7B,KAAK,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC1B,QAAQ,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAC7B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,IAAI,GAAG,KAAK,GAAG,MAAM,CAAC;IAClC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAiBD,UAAU,OAAO;IACf,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,CAAC;CACrB;AAcD,wBAAgB,eAAe,CAC7B,KAAK,EAAE,SAAS,IAAI,EAAE,EACtB,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,aAAa,GACrB;IAAE,OAAO,EAAE,GAAG,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IAAC,OAAO,EAAE,WAAW,EAAE,CAAA;CAAE,CAyC3D;AAED,wBAAsB,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,IAAI,EAAE,EAAE,KAAK,EAAE,gBAAgB,EAAE,OAAO,EAAE,aAAa,GAAG,OAAO,CAAC,aAAa,CAAC,CA6E1I"}

package/dist/core/retrieval/pass.js

@@ -1,8 +1,8 @@
-import path from 'node:path';
 import { catalogSectionsFor, sectionForNote } from '../catalog/model.js';
 import { contentHashOfBody } from '../content/canonicalize.js';
 import { CatalogSectionNotFoundError, NoteNotFoundError } from '../errors.js';
-import { extractLinkTargets } from '../graph/model.js';
+import { extractLinkTargets, linkNames } from '../graph/model.js';
+import { mountScopes } from '../shared-stores-location.js';
 import { backlinkCounts, bridges, hubs } from '../graph/query.js';
 import { isUnderAnyPrefix } from '../notes/list.js';
 import { readCatalogGlosses } from '../records.js';
@@ -80,10 +80,11 @@ export function resolveEntrySet(notes, config, options) {
     // The same backlink enumeration `rollup gather` and `publish gather` use.
     for (const entity of options.entities ?? []) {
         entries.push({ selector: 'entity', value: entity });
-        const stem = path.basename(entity, '.md');
+        const scopes = mountScopes(config);
         for (const note of notes) {
-            if (note.path !== entity && extractLinkTargets(note.body).includes(stem))
+            if (note.path !== entity && extractLinkTargets(note.body).some((target) => linkNames(note.path, target, entity, scopes))) {
                 add(note.path, 'backlink');
+            }
         }
     }
     return { reached, entries };

package/dist/core/retrieval/pass.js.map

@@ -1 +1 @@
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package/dist/core/rollup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"rollup.d.ts","sourceRoot":"","sources":["../../src/core/rollup.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,iBAAiB,CAAC;AAG5C,iHAAiH;AACjH,eAAO,MAAM,YAAY,8BAA6B,CAAC;AACvD,eAAO,MAAM,eAAe,cAAc,CAAC;AAE3C,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,IAAI,GAAG,OAAO,CAEpD;AAaD,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,cAAc,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI,CAAC;CAC3D;AAED;;;;;;;;GAQG;AACH,wBAAsB,oBAAoB,CACxC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,IAAI,EACZ,QAAQ,EAAE,SAAS,IAAI,EAAE,EACzB,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC,gBAAgB,GAAG,IAAI,CAAC,CAsBlC;AAED;;;;;;;;;GASG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,GAAG,gBAAgB,GAAG,IAAI,CAYvG;AAqBD;;;;;;;;;;;GAWG;AACH,wBAAsB,gBAAgB,CACpC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,SAAS,IAAI,EAAE,EACtB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,WAAW,CAAC,EAAE,MAAM,CAAA;CAAO,EACvD,SAAS,SAAI,EACb,GAAG,GAAE,IAAiB,GACrB,OAAO,CAAC,gBAAgB,EAAE,CAAC,CAsB7B"}
+{"version":3,"file":"rollup.d.ts","sourceRoot":"","sources":["../../src/core/rollup.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,iBAAiB,CAAC;AAG5C,iHAAiH;AACjH,eAAO,MAAM,YAAY,8BAA6B,CAAC;AACvD,eAAO,MAAM,eAAe,cAAc,CAAC;AAE3C,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,IAAI,GAAG,OAAO,CAEpD;AAYD,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,cAAc,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI,CAAC;CAC3D;AAED;;;;;;;;GAQG;AACH,wBAAsB,oBAAoB,CACxC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,IAAI,EACZ,QAAQ,EAAE,SAAS,IAAI,EAAE,EACzB,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC,gBAAgB,GAAG,IAAI,CAAC,CAsBlC;AAED;;;;;;;;;GASG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,EAAE,IAAI,GAAG,gBAAgB,GAAG,IAAI,CAYvG;AAqBD;;;;;;;;;;;GAWG;AACH,wBAAsB,gBAAgB,CACpC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,SAAS,IAAI,EAAE,EACtB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,WAAW,CAAC,EAAE,MAAM,CAAA;CAAO,EACvD,SAAS,SAAI,EACb,GAAG,GAAE,IAAiB,GACrB,OAAO,CAAC,gBAAgB,EAAE,CAAC,CAsB7B"}

package/dist/core/rollup.js

@@ -1,5 +1,5 @@
 import path from 'node:path';
-import { extractLinkTargets } from './graph/model.js';
+import { extractLinkTargets, linkNames } from './graph/model.js';
 import { htmlCommentFence } from './markers.js';
 import { parseNote } from './notes/parse.js';
 /** The single fenced region `rollup write` writes into, and the frontmatter timestamp it stamps alongside it. */
@@ -9,8 +9,7 @@ export function hasRollupSection(note) {
     return note.body.includes(ROLLUP_FENCE.start);
 }
 function backlinksFor(notes, entityPath) {
-    const stem = path.basename(entityPath, '.md');
-    return notes.filter((n) => n.path !== entityPath && extractLinkTargets(n.body).includes(stem));
+    return notes.filter((n) => n.path !== entityPath && extractLinkTargets(n.body).some((target) => linkNames(n.path, target, entityPath)));
 }
 async function lastModified(git, root, relativePath) {
     const result = await git.run(['log', '-1', '--format=%cI', '--', relativePath], { cwd: root, allowFailure: true });

package/dist/core/rollup.js.map

@@ -1 +1 @@
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package/dist/core/root.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"root.d.ts","sourceRoot":"","sources":["../../src/core/root.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAIvC,wEAAwE;AACxE,eAAO,MAAM,gBAAgB,oBAAoB,CAAC;AAElD,MAAM,WAAW,SAAS;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,MAAM,CAuBzE;AAeD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,MAAM,CAYxE"}
+{"version":3,"file":"root.d.ts","sourceRoot":"","sources":["../../src/core/root.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAMvC,wEAAwE;AACxE,eAAO,MAAM,gBAAgB,oBAAoB,CAAC;AAElD,MAAM,WAAW,SAAS;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;;;;;;;;;;;;;;;;;;;;;;;GAwBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,MAAM,CA0BzE;AAeD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,SAAS,GAAG,MAAM,CAYxE"}

package/dist/core/root.js

@@ -1,7 +1,9 @@
-import { existsSync } from 'node:fs';
+import { existsSync, readFileSync } from 'node:fs';
 import path from 'node:path';
 import { NoStoreRootError, SupersededStoreRootEnvVarError } from './errors.js';
-import { isWorktreeOf } from './git/repo.js';
+import { parse as parseYaml } from 'yaml';
+import { isWorktreeOf, mainWorkingTreeRoot } from './git/repo.js';
+import { mountLocation } from './shared-stores-location.js';
 /** The one config filename every root-resolution function looks for. */
 export const CONFIG_FILE_NAME = 'contexture.yaml';
 /**
@@ -40,6 +42,9 @@ export function resolveExistingRoot(env, flags) {
         if (here !== null && here !== named && isWorktreeOf(here, named)) {
             return here;
         }
+        if (here !== null && here !== named && isDeclaredMountOf(here, named)) {
+            return here;
+        }
         return named;
     }
     if (env.env.CONTEXTURE_ROOT) {
@@ -85,4 +90,30 @@ export function resolveRootForInit(env, flags) {
     }
     return path.resolve(env.cwd);
 }
+/**
+ * harness-portability spec, root resolution's mount step (mount-shared-stores
+ * D5): whether `candidate` is a mount the store at `named` declares, or a
+ * linked worktree of one. Synchronous and filesystem-only, like the worktree
+ * step: it reads the named store's `contexture.yaml` for mount names alone,
+ * and answers false — so the variable resolves unchanged — whenever that
+ * cannot be read. Mounts sit in the named store's main working tree.
+ */
+function isDeclaredMountOf(candidate, named) {
+    let names;
+    try {
+        const raw = parseYaml(readFileSync(path.join(named, CONFIG_FILE_NAME), 'utf8'));
+        const declared = raw?.shared_stores;
+        if (!Array.isArray(declared))
+            return false;
+        names = declared.flatMap((entry) => (entry !== null && typeof entry === 'object' && typeof entry.name === 'string' ? [entry.name] : []));
+    }
+    catch {
+        return false;
+    }
+    const mainRoot = mainWorkingTreeRoot(named);
+    return names.some((name) => {
+        const mountRoot = path.join(mainRoot, ...mountLocation(name).split('/'));
+        return path.resolve(candidate) === path.resolve(mountRoot) || isWorktreeOf(candidate, mountRoot);
+    });
+}
 //# sourceMappingURL=root.js.map

package/dist/core/root.js.map

@@ -1 +1 @@
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package/dist/core/second-opinion/environment.d.ts

@@ -0,0 +1,21 @@
+/** The forge and contexture prefixes, which take precedence over the pass-through (Revisions after critique, 1). */
+export declare const PROTECTED_PREFIXES: string[];
+/** Names any further variables an operator chooses to pass through, comma- or space-separated. */
+export declare const PASS_ENV_VARIABLE = "CTXR_SECOND_OPINION_PASS_ENV";
+export type SourceEnv = Readonly<Record<string, string | undefined>>;
+/** The names listed in the pass-through variable, in order, without duplicates. */
+export declare function passThroughNames(source: SourceEnv): string[];
+/** Pass-through names that fall under a protected prefix; the command refuses to start while any is listed. */
+export declare function protectedPassThroughNames(source: SourceEnv): string[];
+export interface ChildEnvironment {
+    env: Record<string, string>;
+    /** The names of variables set in the source but not passed on, sorted. Names only: never values. */
+    withheld: string[];
+}
+/**
+ * The environment every model CLI runs with. `PATH` gets the usual
+ * user-install directories appended, so a CLI already on the search path
+ * wins and these only rescue one installed under the home directory.
+ */
+export declare function childEnvironment(source: SourceEnv, home: string): ChildEnvironment;
+//# sourceMappingURL=environment.d.ts.map

package/dist/core/second-opinion/environment.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/second-opinion/environment.js

@@ -0,0 +1,70 @@
+import path from 'node:path';
+/**
+ * run-the-second-opinion-from-the-cli D3: the model CLIs get an environment
+ * built from an allowlist, never a copy of the command's own. On a laptop the
+ * process environment is the operator's shell; in a deployed store's
+ * container it can hold a forge token or the path to an App key, and nothing
+ * a critic is handed should point at either.
+ *
+ * This removes pointers to secrets, not the secrets: a read-only sandbox can
+ * still read any file the process can. It is not a sandbox (D3).
+ */
+/** Variables passed by exact name: search path, home, locale, terminal, proxies and certificates. */
+const ALLOWED_NAMES = new Set([
+    'PATH',
+    'HOME',
+    'USER',
+    'LANG',
+    'TERM',
+    'TMPDIR',
+    'HTTPS_PROXY',
+    'HTTP_PROXY',
+    'NO_PROXY',
+    // The lowercase spellings are the same proxy settings; many tools read only these.
+    'https_proxy',
+    'http_proxy',
+    'no_proxy',
+    'NODE_EXTRA_CA_CERTS',
+]);
+/** Locale, the model CLIs' own login and configuration variables, and this command's own. */
+const ALLOWED_PREFIXES = ['LC_', 'ANTHROPIC_', 'CLAUDE_', 'OPENAI_', 'CODEX_', 'GEMINI_', 'GOOGLE_', 'AGY_', 'CTXR_SECOND_OPINION_'];
+/** The forge and contexture prefixes, which take precedence over the pass-through (Revisions after critique, 1). */
+export const PROTECTED_PREFIXES = ['GH_', 'GITHUB_', 'CONTEXTURE_'];
+/** Names any further variables an operator chooses to pass through, comma- or space-separated. */
+export const PASS_ENV_VARIABLE = 'CTXR_SECOND_OPINION_PASS_ENV';
+/** The names listed in the pass-through variable, in order, without duplicates. */
+export function passThroughNames(source) {
+    const raw = source[PASS_ENV_VARIABLE] ?? '';
+    return [...new Set(raw.split(/[\s,]+/).map((name) => name.trim()).filter(Boolean))];
+}
+/** Pass-through names that fall under a protected prefix; the command refuses to start while any is listed. */
+export function protectedPassThroughNames(source) {
+    return passThroughNames(source).filter((name) => PROTECTED_PREFIXES.some((prefix) => name.startsWith(prefix)));
+}
+function isAllowed(name, passThrough) {
+    if (PROTECTED_PREFIXES.some((prefix) => name.startsWith(prefix)))
+        return false;
+    return ALLOWED_NAMES.has(name) || ALLOWED_PREFIXES.some((prefix) => name.startsWith(prefix)) || passThrough.has(name);
+}
+/**
+ * The environment every model CLI runs with. `PATH` gets the usual
+ * user-install directories appended, so a CLI already on the search path
+ * wins and these only rescue one installed under the home directory.
+ */
+export function childEnvironment(source, home) {
+    const passThrough = new Set(passThroughNames(source));
+    const env = {};
+    const withheld = [];
+    for (const [name, value] of Object.entries(source)) {
+        if (value === undefined)
+            continue;
+        if (isAllowed(name, passThrough))
+            env[name] = value;
+        else
+            withheld.push(name);
+    }
+    const extra = [path.join(home, '.local', 'bin'), path.join(home, '.local', 'share', 'node', 'bin')];
+    env.PATH = [source.PATH ?? '', ...extra].filter(Boolean).join(path.delimiter);
+    return { env, withheld: withheld.sort() };
+}
+//# sourceMappingURL=environment.js.map

package/dist/core/second-opinion/environment.js.map

@@ -0,0 +1 @@
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package/dist/core/second-opinion/judge.d.ts

@@ -0,0 +1,29 @@
+/**
+ * run-the-second-opinion-from-the-cli: critique validation, ported from the
+ * skill's `run.mjs` unchanged. A critique is valid, blind (well-formed but
+ * citing nothing the plan contains), or failed, with the cause.
+ */
+export type Severity = 'critical' | 'major' | 'minor';
+export interface ParsedFinding {
+    severity: Severity | null;
+    confidence: number | null;
+    evidence: string;
+}
+export type CritiqueStatus = 'valid' | 'blind' | 'failed';
+export interface Judgement {
+    status: CritiqueStatus;
+    cause: string | null;
+    verdict: string | null;
+    findings: ParsedFinding[];
+    veto: boolean;
+}
+/** Step ids a plan numbers as S1, S2, ... at the start of a line, list item, or heading. */
+export declare function planStepIds(plan: string): Set<string>;
+export declare function parseCritique(text: string): {
+    verdict: string | null;
+    findings: ParsedFinding[];
+};
+/** True if a finding's evidence points at something the plan actually contains. */
+export declare function evidenceResolves(evidence: string, plan: string, stepIds: ReadonlySet<string>): boolean;
+export declare function judgeCritique(text: string, plan: string): Judgement;
+//# sourceMappingURL=judge.d.ts.map

package/dist/core/second-opinion/judge.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/second-opinion/judge.js

@@ -0,0 +1,55 @@
+const normalizeWs = (s) => s.replace(/\s+/g, ' ').trim().toLowerCase();
+/** Step ids a plan numbers as S1, S2, ... at the start of a line, list item, or heading. */
+export function planStepIds(plan) {
+    const ids = new Set();
+    for (const m of plan.matchAll(/^[ \t]*(?:[-*][ \t]+|#{1,6}[ \t]+)?\**S(\d+)\b/gm))
+        ids.add(`S${m[1]}`);
+    return ids;
+}
+export function parseCritique(text) {
+    const verdict = /^## Verdict:\s*(APPROVE_WITH_CHANGES|APPROVE|REJECT)\b/m.exec(text)?.[1] ?? null;
+    const findings = [];
+    const blocks = text.split(/^### F\d+\b/m).slice(1);
+    for (const block of blocks) {
+        // Brackets around the severity are what the contract asks for, and models drop them: accept both.
+        const head = /^\s*\[?(critical|major|minor)\]?\s*(?:confidence\s*[=:]\s*([01](?:\.\d+)?))?/i.exec(block);
+        const evidence = /^Evidence:\s*(.+)$/im.exec(block)?.[1] ?? '';
+        findings.push({
+            severity: head?.[1]?.toLowerCase() ?? null,
+            confidence: head?.[2] !== undefined ? Number(head[2]) : null,
+            evidence,
+        });
+    }
+    return { verdict, findings };
+}
+/** True if a finding's evidence points at something the plan actually contains. */
+export function evidenceResolves(evidence, plan, stepIds) {
+    for (const m of evidence.matchAll(/\bS(\d+)\b/g))
+        if (stepIds.has(`S${m[1]}`))
+            return true;
+    const haystack = normalizeWs(plan);
+    for (const m of evidence.matchAll(/["“`]([^"”`]{12,})["”`]/g))
+        if (haystack.includes(normalizeWs(m[1])))
+            return true;
+    for (const m of evidence.matchAll(/([\w./-]+\.[a-z]{1,6}):\d+/gi))
+        if (plan.includes(m[1]))
+            return true;
+    return false;
+}
+export function judgeCritique(text, plan) {
+    if (!text)
+        return { status: 'failed', cause: 'empty output', verdict: null, findings: [], veto: false };
+    const { verdict, findings } = parseCritique(text);
+    if (!verdict)
+        return { status: 'failed', cause: 'output has no "## Verdict:" line', verdict, findings, veto: false };
+    if (verdict !== 'APPROVE' && findings.length === 0)
+        return { status: 'failed', cause: `${verdict} with no parseable findings`, verdict, findings, veto: false };
+    const stepIds = planStepIds(plan);
+    const resolved = findings.filter((f) => evidenceResolves(f.evidence, plan, stepIds));
+    // An APPROVE with no findings has nothing to cite and is valid. Findings that exist but resolve to
+    // nothing in the plan mean the critic answered without reading it.
+    const blind = findings.length > 0 && resolved.length === 0;
+    const veto = verdict === 'REJECT' && findings.some((f) => f.severity === 'critical' && resolved.includes(f));
+    return { status: blind ? 'blind' : 'valid', cause: blind ? 'no finding cites anything in the plan' : null, verdict, findings, veto };
+}
+//# sourceMappingURL=judge.js.map

package/dist/core/second-opinion/judge.js.map

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package/dist/core/second-opinion/launch.d.ts

@@ -0,0 +1,16 @@
+/**
+ * run-the-second-opinion-from-the-cli: the one place a model CLI is
+ * launched. No shell anywhere: an argument vector plus standard input, in a
+ * fresh empty scratch directory, with the allowlisted environment the caller
+ * built (D3). Ported from the skill's `run.mjs` unchanged in behaviour.
+ */
+export interface CliResult {
+    ok: boolean;
+    stdout: string;
+    stderr: string;
+    cause?: string;
+}
+export declare const firstLines: (text: string, n: number) => string;
+/** Runs one CLI. Resolves with what it printed and, on failure, why; never rejects. */
+export declare function runCli(cmd: string, args: readonly string[], stdin: string, timeoutSec: number, env: Record<string, string>): Promise<CliResult>;
+//# sourceMappingURL=launch.d.ts.map

package/dist/core/second-opinion/launch.d.ts.map

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package/dist/core/second-opinion/launch.js

@@ -0,0 +1,75 @@
+import { spawn } from 'node:child_process';
+import { mkdtempSync, rmSync } from 'node:fs';
+import { tmpdir } from 'node:os';
+import path from 'node:path';
+export const firstLines = (text, n) => text.trim().split('\n').slice(0, n).join(' | ').slice(0, 400);
+/** Runs one CLI. Resolves with what it printed and, on failure, why; never rejects. */
+export function runCli(cmd, args, stdin, timeoutSec, env) {
+    return new Promise((resolve) => {
+        const scratch = mkdtempSync(path.join(tmpdir(), 'ctxr-second-opinion-'));
+        let settled = false;
+        let stdout = '';
+        let stderr = '';
+        let timedOut = false;
+        let timer;
+        const done = (result) => {
+            if (settled)
+                return;
+            settled = true;
+            if (timer)
+                clearTimeout(timer);
+            try {
+                rmSync(scratch, { recursive: true, force: true });
+            }
+            catch {
+                // best effort
+            }
+            resolve({ stdout, stderr, ...result });
+        };
+        let child;
+        try {
+            // detached: the CLI leads its own process group, so a timeout can stop everything it started.
+            child = spawn(cmd, [...args], { cwd: scratch, env, stdio: ['pipe', 'pipe', 'pipe'], detached: true });
+        }
+        catch (err) {
+            done({ ok: false, cause: `could not start ${cmd}: ${err instanceof Error ? err.message : String(err)}` });
+            return;
+        }
+        const killGroup = (signal) => {
+            try {
+                if (child.pid !== undefined)
+                    process.kill(-child.pid, signal);
+            }
+            catch {
+                // already gone
+            }
+        };
+        timer = setTimeout(() => {
+            timedOut = true;
+            killGroup('SIGTERM');
+            setTimeout(() => killGroup('SIGKILL'), 2000).unref();
+        }, timeoutSec * 1000);
+        // Decoded as a stream, so a multibyte character split across chunks survives.
+        child.stdout?.setEncoding('utf8');
+        child.stderr?.setEncoding('utf8');
+        child.stdout?.on('data', (d) => {
+            stdout += d;
+        });
+        child.stderr?.on('data', (d) => {
+            stderr += d;
+        });
+        child.on('error', (err) => done({ ok: false, cause: err.code === 'ENOENT' ? `'${cmd}' not found on PATH` : `could not start ${cmd}: ${err.message}` }));
+        child.on('close', (code) => {
+            if (timedOut)
+                return done({ ok: false, cause: `timed out after ${timeoutSec}s` });
+            if (code !== 0)
+                return done({ ok: false, cause: `exit ${code}: ${firstLines(stderr || stdout, 3)}` });
+            return done({ ok: true });
+        });
+        child.stdin?.on('error', () => {
+            // the CLI closed stdin early; its exit code says why
+        });
+        child.stdin?.end(stdin);
+    });
+}
+//# sourceMappingURL=launch.js.map