ctxr-cli 0.23.0 → 0.25.0

package/dist/core/graph/diff.d.ts

@@ -0,0 +1,123 @@
+import type { StoreConfig } from '../../config/schema.js';
+import type { GitRunner } from '../git/exec.js';
+import { type DanglingLink, type GraphBuildResult, type GraphEdge } from './model.js';
+import { type CommitNote } from './tree.js';
+/**
+ * review-the-knowledge-diff: how the store's knowledge changed between two
+ * commits — facts only, with no severity, score or ranking (D10). Every list
+ * is sorted by path and then by its remaining fields, and nothing here reads
+ * the clock, so the same two commits and configuration give the same value.
+ */
+export interface NoteRename {
+    from: string;
+    to: string;
+}
+export interface InboundChange {
+    path: string;
+    gained: string[];
+    lost: string[];
+    /** Whether the note carries a rollup region on the head side. */
+    rollup: boolean;
+}
+export type RollupChange = 'added' | 'removed' | 'changed';
+export interface RollupTouched {
+    path: string;
+    change: RollupChange;
+}
+export interface SourcesCited {
+    path: string;
+    cited: string[];
+}
+export interface GraphDeltaCounts {
+    notes_added: number;
+    notes_removed: number;
+    notes_modified: number;
+    notes_moved: number;
+    notes_archived: number;
+    links_added: number;
+    links_removed: number;
+    dangling_introduced: number;
+    dangling_resolved: number;
+    inbound_changed: number;
+    rollups_touched: number;
+    sources_cited: number;
+}
+export interface GraphDelta {
+    /** The full id of the base commit: the merge base of `--since` and the head. */
+    base: string;
+    /** The full id of the head commit. */
+    head: string;
+    counts: GraphDeltaCounts;
+    notes: {
+        added: string[];
+        removed: string[];
+        modified: string[];
+        moved: NoteRename[];
+        archived: NoteRename[];
+    };
+    links: {
+        added: GraphEdge[];
+        removed: GraphEdge[];
+    };
+    dangling: {
+        introduced: DanglingLink[];
+        resolved: DanglingLink[];
+    };
+    inbound: InboundChange[];
+    rollups: RollupTouched[];
+    sources: SourcesCited[];
+}
+/** One side of the comparison: a commit, the notes it holds, and the graph built from them. */
+export interface GraphSide {
+    commit: string;
+    notes: readonly CommitNote[];
+    graph: GraphBuildResult;
+}
+/** A rename git's rename detection reported between the two commits, store-relative. */
+export type RenameTable = readonly NoteRename[];
+export declare function isEmptyDelta(delta: GraphDelta): boolean;
+/**
+ * review-the-knowledge-diff (D3): the delta between two built sides. Every
+ * base-side path is carried through the moves and archives first, so a note
+ * that moved with its links still resolving reports no link change, and edges
+ * compare as distinct `(src, dst, type)` triples, so a link written twice
+ * counts once.
+ *
+ * A rename into `organize.archive_destination` from outside it is an archive,
+ * whether or not the destination is admitted; any other rename between two
+ * admitted paths is a move. A rename that leaves the admitted set is a removal
+ * and one that enters it is an addition, which is what each side shows.
+ */
+export declare function diffGraphs(base: GraphSide, head: GraphSide, renames: RenameTable, config: StoreConfig): GraphDelta;
+/** The full id of the commit `ref` names, or the error naming it. */
+export declare function resolveCommit(git: GitRunner, cwd: string, ref: string, flag: '--since' | '--until'): Promise<string>;
+/**
+ * review-the-knowledge-diff (D1): the head is `until` (HEAD when absent) and
+ * the base is the merge base of `since` and the head — the `<ref>...HEAD`
+ * meaning `publish urls --since` uses, so both pull-request sections describe
+ * one change set. A base id and a head id that descends from it resolve back
+ * to themselves, which is what makes the reported range re-runnable.
+ */
+export declare function resolveRange(git: GitRunner, cwd: string, since: string, until: string | undefined): Promise<{
+    base: string;
+    head: string;
+}>;
+/**
+ * review-the-knowledge-diff (D3): git's renames between the two commits, with
+ * every knob that could change them pinned on the command line, so a user's
+ * `diff.renames`, `diff.renameLimit`, external diff driver or textconv filter
+ * cannot change the report. `--relative` makes the paths store-relative for a
+ * store rooted below the repository's top level.
+ */
+export declare function readRenames(git: GitRunner, storeRoot: string, base: string, head: string): Promise<NoteRename[]>;
+/**
+ * Both sides read from git's object store under the CURRENT configuration
+ * (D2), so a path that configuration excludes appears on neither side. No
+ * checkout, no stash, and nothing written — the per-checkout graph artifact is
+ * neither read nor rebuilt.
+ */
+export declare function computeGraphDelta(git: GitRunner, storeRoot: string, range: {
+    base: string;
+    head: string;
+}, config: StoreConfig): Promise<GraphDelta>;
+//# sourceMappingURL=diff.d.ts.map

package/dist/core/graph/diff.d.ts.map

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package/dist/core/graph/diff.js

@@ -0,0 +1,253 @@
+import { GraphDiffNoMergeBaseError, GraphDiffRefNotFoundError } from '../errors.js';
+import { isStrictlyUnderPrefix, isUnderPrefix } from '../fs/prefix.js';
+import { readFencedRegion } from '../fs/fenced-region.js';
+import { SOURCES_FIELD } from '../ingest/identity.js';
+import { hasRollupSection, ROLLUP_FENCE } from '../rollup.js';
+import { buildGraphFromNotes, graphBuildOptions } from './model.js';
+import { listNotesAtCommit } from './tree.js';
+export function isEmptyDelta(delta) {
+    return Object.values(delta.counts).every((count) => count === 0);
+}
+function compareStrings(a, b) {
+    return a < b ? -1 : a > b ? 1 : 0;
+}
+function compareTuples(a, b) {
+    for (let i = 0; i < Math.min(a.length, b.length); i++) {
+        const order = compareStrings(a[i], b[i]);
+        if (order !== 0)
+            return order;
+    }
+    return a.length - b.length;
+}
+function sortBy(items, key) {
+    return items.sort((a, b) => compareTuples(key(a), key(b)));
+}
+const edgeKey = (edge) => [edge.src, edge.dst, edge.type].join('\0');
+const danglingKey = (link) => [link.from, link.target, link.reason].join('\0');
+/** The rollup region's text, or null when the note has none. A malformed fence reads as its whole body, so any edit to it still shows. */
+function rollupRegion(note) {
+    if (note === undefined || !hasRollupSection(note))
+        return null;
+    try {
+        return readFencedRegion(note.body, ROLLUP_FENCE).join('\n');
+    }
+    catch {
+        return note.body;
+    }
+}
+/** The provenance field's entries; a lone string is one entry, anything else none. */
+function sourcesOf(note) {
+    const value = note?.frontmatter?.[SOURCES_FIELD];
+    if (Array.isArray(value))
+        return value.map((entry) => String(entry));
+    if (typeof value === 'string')
+        return [value];
+    return [];
+}
+function inboundOf(edges) {
+    const inbound = new Map();
+    for (const edge of edges) {
+        const sources = inbound.get(edge.dst) ?? new Set();
+        sources.add(edge.src);
+        inbound.set(edge.dst, sources);
+    }
+    return inbound;
+}
+/**
+ * review-the-knowledge-diff (D3): the delta between two built sides. Every
+ * base-side path is carried through the moves and archives first, so a note
+ * that moved with its links still resolving reports no link change, and edges
+ * compare as distinct `(src, dst, type)` triples, so a link written twice
+ * counts once.
+ *
+ * A rename into `organize.archive_destination` from outside it is an archive,
+ * whether or not the destination is admitted; any other rename between two
+ * admitted paths is a move. A rename that leaves the admitted set is a removal
+ * and one that enters it is an addition, which is what each side shows.
+ */
+export function diffGraphs(base, head, renames, config) {
+    const baseNotes = new Map(base.notes.map((note) => [note.path, note]));
+    const headNotes = new Map(head.notes.map((note) => [note.path, note]));
+    const destination = config.organize.archive_destination;
+    const moved = [];
+    const archived = [];
+    for (const rename of renames) {
+        if (!baseNotes.has(rename.from))
+            continue;
+        if (isStrictlyUnderPrefix(rename.to, destination) && !isUnderPrefix(rename.from, destination))
+            archived.push(rename);
+        else if (headNotes.has(rename.to))
+            moved.push(rename);
+    }
+    const forward = new Map([...moved, ...archived].map((rename) => [rename.from, rename.to]));
+    const backward = new Map([...moved, ...archived].map((rename) => [rename.to, rename.from]));
+    const mapPath = (basePath) => forward.get(basePath) ?? basePath;
+    const baseOf = (headPath) => baseNotes.get(backward.get(headPath) ?? headPath);
+    const mappedBasePaths = new Set(base.notes.map((note) => mapPath(note.path)));
+    const added = head.notes.map((note) => note.path).filter((notePath) => !mappedBasePaths.has(notePath));
+    const removed = base.notes
+        .map((note) => note.path)
+        .filter((notePath) => !forward.has(notePath) && !headNotes.has(notePath));
+    const modified = head.notes
+        .filter((note) => mappedBasePaths.has(note.path) && baseOf(note.path).blob !== note.blob)
+        .map((note) => note.path);
+    const baseEdges = new Map();
+    for (const edge of base.graph.edges) {
+        const mapped = { src: mapPath(edge.src), dst: mapPath(edge.dst), type: edge.type };
+        baseEdges.set(edgeKey(mapped), mapped);
+    }
+    const headEdges = new Map(head.graph.edges.map((edge) => [edgeKey(edge), { ...edge }]));
+    const linksAdded = [...headEdges].filter(([key]) => !baseEdges.has(key)).map(([, edge]) => edge);
+    const linksRemoved = [...baseEdges].filter(([key]) => !headEdges.has(key)).map(([, edge]) => edge);
+    const baseDangling = new Map(base.graph.dangling.map((link) => {
+        const mapped = { ...link, from: mapPath(link.from) };
+        return [danglingKey(mapped), mapped];
+    }));
+    const headDangling = new Map(head.graph.dangling.map((link) => [danglingKey(link), { ...link }]));
+    const introduced = [...headDangling].filter(([key]) => !baseDangling.has(key)).map(([, link]) => link);
+    // A dangling link that left with its note was removed, not resolved: only a source still present can resolve one.
+    const resolved = [...baseDangling]
+        .filter(([key, link]) => !headDangling.has(key) && headNotes.has(link.from))
+        .map(([, link]) => link);
+    const baseInbound = inboundOf(baseEdges.values());
+    const headInbound = inboundOf(headEdges.values());
+    const inbound = [];
+    for (const target of new Set([...baseInbound.keys(), ...headInbound.keys()])) {
+        const before = baseInbound.get(target) ?? new Set();
+        const after = headInbound.get(target) ?? new Set();
+        const gained = [...after].filter((source) => !before.has(source)).sort(compareStrings);
+        const lost = [...before].filter((source) => !after.has(source)).sort(compareStrings);
+        if (gained.length === 0 && lost.length === 0)
+            continue;
+        const headNote = headNotes.get(target);
+        inbound.push({ path: target, gained, lost, rollup: headNote !== undefined && hasRollupSection(headNote) });
+    }
+    const rollups = [];
+    for (const note of head.notes) {
+        const before = rollupRegion(baseOf(note.path));
+        const after = rollupRegion(note);
+        if (before === after)
+            continue;
+        rollups.push({ path: note.path, change: before === null ? 'added' : after === null ? 'removed' : 'changed' });
+    }
+    for (const note of base.notes) {
+        if (headNotes.has(mapPath(note.path)) || rollupRegion(note) === null)
+            continue;
+        rollups.push({ path: note.path, change: 'removed' });
+    }
+    const sources = [];
+    for (const notePath of [...added, ...modified]) {
+        const before = new Set(sourcesOf(baseOf(notePath)));
+        const cited = [...new Set(sourcesOf(headNotes.get(notePath)))].filter((entry) => !before.has(entry)).sort(compareStrings);
+        if (cited.length > 0)
+            sources.push({ path: notePath, cited });
+    }
+    const delta = {
+        base: base.commit,
+        head: head.commit,
+        counts: {
+            notes_added: added.length,
+            notes_removed: removed.length,
+            notes_modified: modified.length,
+            notes_moved: moved.length,
+            notes_archived: archived.length,
+            links_added: linksAdded.length,
+            links_removed: linksRemoved.length,
+            dangling_introduced: introduced.length,
+            dangling_resolved: resolved.length,
+            inbound_changed: inbound.length,
+            rollups_touched: rollups.length,
+            sources_cited: sources.length,
+        },
+        notes: {
+            added: added.sort(compareStrings),
+            removed: removed.sort(compareStrings),
+            modified: modified.sort(compareStrings),
+            moved: sortBy(moved, (r) => [r.from, r.to]),
+            archived: sortBy(archived, (r) => [r.from, r.to]),
+        },
+        links: {
+            added: sortBy(linksAdded, (e) => [e.src, e.dst, e.type]),
+            removed: sortBy(linksRemoved, (e) => [e.src, e.dst, e.type]),
+        },
+        dangling: {
+            introduced: sortBy(introduced, (d) => [d.from, d.target, d.reason]),
+            resolved: sortBy(resolved, (d) => [d.from, d.target, d.reason]),
+        },
+        inbound: sortBy(inbound, (i) => [i.path]),
+        rollups: sortBy(rollups, (r) => [r.path, r.change]),
+        sources: sortBy(sources, (s) => [s.path]),
+    };
+    return delta;
+}
+/** The full id of the commit `ref` names, or the error naming it. */
+export async function resolveCommit(git, cwd, ref, flag) {
+    const result = await git.run(['rev-parse', '--verify', '--quiet', '--end-of-options', `${ref}^{commit}`], { cwd, allowFailure: true });
+    if (result.exitCode !== 0)
+        throw new GraphDiffRefNotFoundError(flag, ref);
+    return result.stdout.trim();
+}
+/**
+ * review-the-knowledge-diff (D1): the head is `until` (HEAD when absent) and
+ * the base is the merge base of `since` and the head — the `<ref>...HEAD`
+ * meaning `publish urls --since` uses, so both pull-request sections describe
+ * one change set. A base id and a head id that descends from it resolve back
+ * to themselves, which is what makes the reported range re-runnable.
+ */
+export async function resolveRange(git, cwd, since, until) {
+    const sinceCommit = await resolveCommit(git, cwd, since, '--since');
+    const head = await resolveCommit(git, cwd, until ?? 'HEAD', '--until');
+    const result = await git.run(['merge-base', sinceCommit, head], { cwd, allowFailure: true });
+    if (result.exitCode !== 0)
+        throw new GraphDiffNoMergeBaseError(since, until ?? 'HEAD');
+    return { base: result.stdout.trim(), head };
+}
+/**
+ * review-the-knowledge-diff (D3): git's renames between the two commits, with
+ * every knob that could change them pinned on the command line, so a user's
+ * `diff.renames`, `diff.renameLimit`, external diff driver or textconv filter
+ * cannot change the report. `--relative` makes the paths store-relative for a
+ * store rooted below the repository's top level.
+ */
+export async function readRenames(git, storeRoot, base, head) {
+    const { stdout } = await git.run([
+        '-c', 'diff.renameLimit=0',
+        '-c', 'diff.renames=true',
+        'diff', '--name-status', '-z', '--relative', '-M50%', '--no-ext-diff', '--no-textconv',
+        base, head, '--',
+    ], { cwd: storeRoot });
+    const fields = stdout.split('\0');
+    const renames = [];
+    for (let i = 0; i < fields.length; i++) {
+        const code = fields[i];
+        if (code === '')
+            continue;
+        if (code.startsWith('R') || code.startsWith('C')) {
+            if (code.startsWith('R'))
+                renames.push({ from: fields[i + 1], to: fields[i + 2] });
+            i += 2;
+            continue;
+        }
+        i += 1;
+    }
+    return renames;
+}
+async function readSide(git, storeRoot, commit, config) {
+    const notes = await listNotesAtCommit(git, storeRoot, commit, config);
+    return { commit, notes, graph: buildGraphFromNotes(notes, graphBuildOptions(config)) };
+}
+/**
+ * Both sides read from git's object store under the CURRENT configuration
+ * (D2), so a path that configuration excludes appears on neither side. No
+ * checkout, no stash, and nothing written — the per-checkout graph artifact is
+ * neither read nor rebuilt.
+ */
+export async function computeGraphDelta(git, storeRoot, range, config) {
+    const [base, head, renames] = await Promise.all([
+        readSide(git, storeRoot, range.base, config),
+        readSide(git, storeRoot, range.head, config),
+        readRenames(git, storeRoot, range.base, range.head),
+    ]);
+    return diffGraphs(base, head, renames, config);
+}
+//# sourceMappingURL=diff.js.map

package/dist/core/graph/diff.js.map

@@ -0,0 +1 @@
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package/dist/core/graph/tree.d.ts

@@ -0,0 +1,24 @@
+import type { StoreConfig } from '../../config/schema.js';
+import { type GitRunner } from '../git/exec.js';
+import { type Note } from '../notes/list.js';
+/** A note read from a commit, with the blob it was read from, so two sides compare by object id rather than by text. */
+export interface CommitNote extends Note {
+    blob: string;
+}
+/**
+ * The store root's path below the repository's top level, "/"-terminated, or
+ * "" when the store is the top level — the prefix every tree path carries and
+ * every reported path drops.
+ */
+export declare function storePrefix(git: GitRunner, storeRoot: string): Promise<string>;
+/**
+ * review-the-knowledge-diff (D2): the notes a commit holds, enumerated by the
+ * same admission rule `listNotes` applies to the filesystem and read through
+ * git's object store, so neither side of a graph diff needs a checkout, and
+ * the working tree's uncommitted or untracked files never enter it.
+ *
+ * Paths are relative to the store root and sorted, matching `listNotes`.
+ * Writes nothing.
+ */
+export declare function listNotesAtCommit(git: GitRunner, storeRoot: string, commit: string, config: StoreConfig): Promise<CommitNote[]>;
+//# sourceMappingURL=tree.d.ts.map

package/dist/core/graph/tree.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"tree.d.ts","sourceRoot":"","sources":["../../../src/core/graph/tree.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAC1D,OAAO,EAAa,KAAK,SAAS,EAAE,MAAM,gBAAgB,CAAC;AAC3D,OAAO,EAAiB,KAAK,IAAI,EAAE,MAAM,kBAAkB,CAAC;AAG5D,wHAAwH;AACxH,MAAM,WAAW,UAAW,SAAQ,IAAI;IACtC,IAAI,EAAE,MAAM,CAAC;CACd;AAKD;;;;GAIG;AACH,wBAAsB,WAAW,CAAC,GAAG,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAGpF;AAED;;;;;;;;GAQG;AACH,wBAAsB,iBAAiB,CAAC,GAAG,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAmBrI"}

package/dist/core/graph/tree.js

@@ -0,0 +1,45 @@
+import { readBlobs } from '../git/exec.js';
+import { noteAdmission } from '../notes/list.js';
+import { parseNoteText } from '../notes/parse.js';
+/** A regular-file or executable blob; a symlink (`120000`) is skipped, as the filesystem walk's `isFile()` skips one. */
+const FILE_MODES = new Set(['100644', '100755']);
+/**
+ * The store root's path below the repository's top level, "/"-terminated, or
+ * "" when the store is the top level — the prefix every tree path carries and
+ * every reported path drops.
+ */
+export async function storePrefix(git, storeRoot) {
+    const { stdout } = await git.run(['rev-parse', '--show-prefix'], { cwd: storeRoot });
+    return stdout.replace(/\n$/, '');
+}
+/**
+ * review-the-knowledge-diff (D2): the notes a commit holds, enumerated by the
+ * same admission rule `listNotes` applies to the filesystem and read through
+ * git's object store, so neither side of a graph diff needs a checkout, and
+ * the working tree's uncommitted or untracked files never enter it.
+ *
+ * Paths are relative to the store root and sorted, matching `listNotes`.
+ * Writes nothing.
+ */
+export async function listNotesAtCommit(git, storeRoot, commit, config) {
+    const prefix = await storePrefix(git, storeRoot);
+    const pathspec = prefix === '' ? [] : ['--', prefix];
+    const { stdout } = await git.run(['ls-tree', '-r', '-z', '--full-tree', commit, ...pathspec], { cwd: storeRoot });
+    const admits = noteAdmission(config);
+    const admitted = [];
+    for (const record of stdout.split('\0')) {
+        if (record === '')
+            continue;
+        const tab = record.indexOf('\t');
+        const [mode, type, blob] = record.slice(0, tab).split(' ');
+        if (type !== 'blob' || !FILE_MODES.has(mode))
+            continue;
+        const relativePath = record.slice(tab + 1).slice(prefix.length);
+        if (admits(relativePath))
+            admitted.push({ path: relativePath, blob: blob });
+    }
+    admitted.sort((a, b) => (a.path < b.path ? -1 : a.path > b.path ? 1 : 0));
+    const texts = await readBlobs(storeRoot, admitted.map((entry) => entry.blob));
+    return admitted.map((entry) => ({ ...parseNoteText(texts.get(entry.blob), entry.path), blob: entry.blob }));
+}
+//# sourceMappingURL=tree.js.map

package/dist/core/graph/tree.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tree.js","sourceRoot":"","sources":["../../../src/core/graph/tree.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAkB,MAAM,gBAAgB,CAAC;AAC3D,OAAO,EAAE,aAAa,EAAa,MAAM,kBAAkB,CAAC;AAC5D,OAAO,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOlD,yHAAyH;AACzH,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC;AAEjD;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,GAAc,EAAE,SAAiB;IACjE,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,WAAW,EAAE,eAAe,CAAC,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,CAAC;IACrF,OAAO,MAAM,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;AACnC,CAAC;AAED;;;;;;;;GAQG;AACH,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,GAAc,EAAE,SAAiB,EAAE,MAAc,EAAE,MAAmB;IAC5G,MAAM,MAAM,GAAG,MAAM,WAAW,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IACjD,MAAM,QAAQ,GAAG,MAAM,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IACrD,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,GAAG,QAAQ,CAAC,EAAE,EAAE,GAAG,EAAE,SAAS,EAAE,CAAC,CAAC;IAElH,MAAM,MAAM,GAAG,aAAa,CAAC,MAAM,CAAC,CAAC;IACrC,MAAM,QAAQ,GAAqC,EAAE,CAAC;IACtD,KAAK,MAAM,MAAM,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QACxC,IAAI,MAAM,KAAK,EAAE;YAAE,SAAS;QAC5B,MAAM,GAAG,GAAG,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC;QACjC,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC3D,IAAI,IAAI,KAAK,MAAM,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,IAAK,CAAC;YAAE,SAAS;QACxD,MAAM,YAAY,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAChE,IAAI,MAAM,CAAC,YAAY,CAAC;YAAE,QAAQ,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,IAAK,EAAE,CAAC,CAAC;IAC/E,CAAC;IACD,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAE1E,MAAM,KAAK,GAAG,MAAM,SAAS,CAAC,SAAS,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;IAC9E,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAE,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;AAC/G,CAAC"}

package/dist/core/notes/list.d.ts

@@ -17,6 +17,16 @@ export interface Note {
  */
 export { isUnderAnyPrefix } from '../fs/prefix.js';
 export declare function excludedPrefixesFor(config: StoreConfig): string[];
+/**
+ * review-the-knowledge-diff (D2): the note-admission rule as one pure
+ * predicate over a store-relative, "/"-separated path, so the git-tree
+ * enumeration (`graph/tree.ts`) admits exactly what the filesystem walk does.
+ * Built once per enumeration: the exclusion list and the harness entry files
+ * are resolved here, not per path.
+ */
+export declare function noteAdmission(config: StoreConfig): (relativePath: string) => boolean;
+/** The single-path form of `noteAdmission`, for a caller holding one path. */
+export declare function admitsNotePath(relativePath: string, config: StoreConfig): boolean;
 /**
  * retain-captures-as-provenance: every markdown capture in the tier, which is
  * exactly the set `listNotes` refuses to return — the capture root is a

package/dist/core/notes/list.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../../src/core/notes/list.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAI1D,+DAA+D;AAC/D,MAAM,WAAW,SAAS;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,IAAI;IACnB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,CAAC;IACjD,IAAI,EAAE,MAAM,CAAC;CACd;AAmCD;;;;;GAKG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAEnD,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAmBjE;AAkCD;;;;;;;;;;;GAWG;AACH,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAM1F;AAED,wGAAwG;AACxG,wBAAsB,SAAS,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,GAAE,SAAc,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAO9G"}
+{"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../../src/core/notes/list.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAI1D,+DAA+D;AAC/D,MAAM,WAAW,SAAS;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,MAAM,WAAW,IAAI;IACnB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,CAAC;IACjD,IAAI,EAAE,MAAM,CAAC;CACd;AAmCD;;;;;GAKG;AACH,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAEnD,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAmBjE;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,WAAW,GAAG,CAAC,YAAY,EAAE,MAAM,KAAK,OAAO,CAEpF;AAED,8EAA8E;AAC9E,wBAAgB,cAAc,CAAC,YAAY,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAEjF;AA8CD;;;;;;;;;;;GAWG;AACH,wBAAsB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAM1F;AAED,wGAAwG;AACxG,wBAAsB,SAAS,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,GAAE,SAAc,GAAG,OAAO,CAAC,IAAI,EAAE,CAAC,CAQ9G"}

package/dist/core/notes/list.js

@@ -13,7 +13,7 @@ const ALWAYS_SKIP_DIRS = new Set(['.git', '.githooks', '.queue']);
  * generates: the store root's own `AGENTS.md` (`agents-doc.ts` hardcodes
  * `path.join(root, 'AGENTS.md')`, never a nested path). A same-named file
  * anywhere else is ordinary content an operator happened to name AGENTS.md
- * — the walk below applies this root-only, the same way it treats a
+ * — the admission predicate below applies this root-only, the same way it treats a
  * harness's own entry filename (`skipRootFiles`, right below).
  */
 const ALWAYS_SKIP_FILES = new Set(['AGENTS.md']);
@@ -60,7 +60,34 @@ export function excludedPrefixesFor(config) {
         config.organize.log_path ?? DEFAULT_LOG_PATH,
     ];
 }
-async function walk(dir, root, excludePrefixes, skipRootFiles, results) {
+/**
+ * review-the-knowledge-diff (D2): the note-admission rule as one pure
+ * predicate over a store-relative, "/"-separated path, so the git-tree
+ * enumeration (`graph/tree.ts`) admits exactly what the filesystem walk does.
+ * Built once per enumeration: the exclusion list and the harness entry files
+ * are resolved here, not per path.
+ */
+export function noteAdmission(config) {
+    return pathAdmission(excludedPrefixesFor(config), harnessEntryFiles(config));
+}
+/** The single-path form of `noteAdmission`, for a caller holding one path. */
+export function admitsNotePath(relativePath, config) {
+    return noteAdmission(config)(relativePath);
+}
+function pathAdmission(excludePrefixes, skipRootFiles) {
+    return (relativePath) => {
+        const segments = relativePath.split('/');
+        const name = segments[segments.length - 1];
+        if (!name.endsWith('.md'))
+            return false;
+        if (segments.slice(0, -1).some((segment) => ALWAYS_SKIP_DIRS.has(segment)))
+            return false;
+        if (segments.length === 1 && (ALWAYS_SKIP_FILES.has(name) || skipRootFiles.has(name)))
+            return false;
+        return !isUnderAnyPrefix(relativePath, excludePrefixes);
+    };
+}
+async function walk(dir, root, excludePrefixes, admits, results) {
     let entries;
     try {
         entries = await readdir(dir, { withFileTypes: true });
@@ -74,19 +101,14 @@ async function walk(dir, root, excludePrefixes, skipRootFiles, results) {
         const fullPath = path.join(dir, entry.name);
         const relativePath = path.relative(root, fullPath).split(path.sep).join('/');
         if (entry.isDirectory()) {
+            // Pruning only: `admits` would refuse every file beneath; this skips reading them.
             if (ALWAYS_SKIP_DIRS.has(entry.name))
                 continue;
             if (isUnderAnyPrefix(relativePath, excludePrefixes))
                 continue;
-            await walk(fullPath, root, excludePrefixes, skipRootFiles, results);
+            await walk(fullPath, root, excludePrefixes, admits, results);
         }
-        else if (entry.isFile() && entry.name.endsWith('.md')) {
-            if (relativePath === entry.name && ALWAYS_SKIP_FILES.has(entry.name))
-                continue;
-            if (relativePath === entry.name && skipRootFiles.has(entry.name))
-                continue;
-            if (isUnderAnyPrefix(relativePath, excludePrefixes))
-                continue;
+        else if (entry.isFile() && admits(relativePath)) {
             results.push(relativePath);
         }
     }
@@ -106,14 +128,15 @@ async function walk(dir, root, excludePrefixes, skipRootFiles, results) {
 export async function listCaptures(storeRoot, config) {
     const captureRoot = path.join(storeRoot, config.ingest.capture_root);
     const relativePaths = [];
-    await walk(captureRoot, storeRoot, [], new Set(), relativePaths);
+    await walk(captureRoot, storeRoot, [], pathAdmission([], new Set()), relativePaths);
     relativePaths.sort();
     return Promise.all(relativePaths.map((relativePath) => parseNote(path.join(storeRoot, relativePath), relativePath)));
 }
 /** Every retrievable note in the store: everything under a .md path, minus every declared exclusion. */
 export async function listNotes(storeRoot, config, query = {}) {
     const relativePaths = [];
-    await walk(storeRoot, storeRoot, excludedPrefixesFor(config), harnessEntryFiles(config), relativePaths);
+    const excludePrefixes = excludedPrefixesFor(config);
+    await walk(storeRoot, storeRoot, excludePrefixes, pathAdmission(excludePrefixes, harnessEntryFiles(config)), relativePaths);
     relativePaths.sort();
     const scoped = query.underPrefix ? relativePaths.filter((p) => isUnderAnyPrefix(p, [query.underPrefix])) : relativePaths;
     return Promise.all(scoped.map((relativePath) => parseNote(path.join(storeRoot, relativePath), relativePath)));

package/dist/core/notes/list.js.map

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