ctxr-cli 0.2.2 → 0.4.0

package/dist/config/defaults.js

@@ -24,12 +24,10 @@ export const DEFAULT_VISIBILITY_CONTEXT = 'private';
 /**
  * context-store spec (contexture-home-layout): `.contexture/` is the tool's
  * home directory. Only its cache subpath is derived/gitignored — the
- * catalog, identity, and procedure subdirectories are authored-but-tool-
- * owned and stay tracked.
+ * catalog and procedure subdirectories are authored-but-tool-owned and stay
+ * tracked.
  */
 export const DEFAULT_DERIVED_PATHS = ['.contexture/cache/'];
-/** agent-identity spec: canonical identity files live here, excluded from every retrieval leg. */
-export const DEFAULT_IDENTITY_PATH = '.contexture/identity/';
 /**
  * harness-portability spec (entry-doc-generation D5): contexture-owned
  * skills are copied here (`<slug>/SKILL.md`), defaulting to the directory
@@ -54,6 +52,8 @@ export const DEFAULT_GRAPH_SETTINGS = {
 export const DEFAULT_WORKTREES_PATH = '.worktrees/';
 /** Branch names for session worktrees are prefixed so they're recognizable and sweep-safe. */
 export const DEFAULT_SESSION_BRANCH_PREFIX = 'session/';
+/** write-lifecycle spec: worktrees are ctxr-owned (not externally provided) unless a store opts in. */
+export const DEFAULT_WORKSPACES_EXTERNAL = false;
 /** write-lifecycle spec: pre-commit's diff-size ceiling, in total changed lines. */
 export const DEFAULT_DIFF_SIZE_CEILING_LINES = 2000;
 /** context-catalog spec: where per-section catalog files live — tracked (never gitignored), since glosses are authored. */

package/dist/config/defaults.js.map

@@ -1 +1 @@
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+{"version":3,"file":"defaults.js","sourceRoot":"","sources":["../../src/config/defaults.ts"],"names":[],"mappings":"AAEA;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,MAAM,4BAA4B,GAAG,MAAM,CAAC;AAEnD;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,8BAA8B,GAAG,OAAO,CAAC;AAEtD,gFAAgF;AAChF,MAAM,CAAC,MAAM,0BAA0B,GAAG,SAAS,CAAC;AAEpD;;;;;GAKG;AACH,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,oBAAoB,CAAU,CAAC;AAErE;;;;;GAKG;AACH,MAAM,CAAC,MAAM,uBAAuB,GAAG,iBAAiB,CAAC;AAEzD,gHAAgH;AAChH,MAAM,CAAC,MAAM,wBAAwB,GAAG,0BAA0B,CAAC;AAEnE,0DAA0D;AAC1D,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,cAAc,CAAU,CAAC;AAE/D,oHAAoH;AACpH,MAAM,CAAC,MAAM,iBAAiB,GAAsB,EAAE,CAAC;AAEvD,8HAA8H;AAC9H,MAAM,CAAC,MAAM,sBAAsB,GAAG;IACpC,aAAa,EAAE,CAAC;IAChB,OAAO,EAAE,CAAC;IACV,UAAU,EAAE,EAAE;IACd,sBAAsB,EAAE,EAAc;CACvC,CAAC;AAEF,wFAAwF;AACxF,MAAM,CAAC,MAAM,sBAAsB,GAAG,aAAa,CAAC;AAEpD,8FAA8F;AAC9F,MAAM,CAAC,MAAM,6BAA6B,GAAG,UAAU,CAAC;AAExD,uGAAuG;AACvG,MAAM,CAAC,MAAM,2BAA2B,GAAG,KAAK,CAAC;AAEjD,oFAAoF;AACpF,MAAM,CAAC,MAAM,+BAA+B,GAAG,IAAI,CAAC;AAEpD,2HAA2H;AAC3H,MAAM,CAAC,MAAM,oBAAoB,GAAG,sBAAsB,CAAC;AAE3D,6GAA6G;AAC7G,MAAM,CAAC,MAAM,iCAAiC,GAAG,EAAE,GAAG,IAAI,CAAC;AAE3D,8JAA8J;AAC9J,MAAM,CAAC,MAAM,0BAA0B,GAAsB,EAAE,CAAC;AAChE,MAAM,CAAC,MAAM,kBAAkB,GAA8B,EAAE,CAAC;AAEhE,uGAAuG;AACvG,MAAM,CAAC,MAAM,kBAAkB,GAAG,QAAQ,CAAC;AAE3C,gJAAgJ;AAChJ,MAAM,CAAC,MAAM,uBAAuB,GAAG,CAAC,YAAY,EAAE,YAAY,EAAE,cAAc,EAAE,UAAU,EAAE,aAAa,EAAE,QAAQ,EAAE,OAAO,CAAC,CAAC;AAElI,4FAA4F;AAC5F,MAAM,CAAC,MAAM,oBAAoB,GAAG,UAAU,CAAC;AAE/C,iHAAiH;AACjH,MAAM,CAAC,MAAM,yBAAyB,GAAG,CAAC,CAAC;AAE3C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,gBAAgB,GAAkC;IAC7D,EAAE,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE;IAC/B,EAAE,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,oBAAoB,EAAE;CAClD,CAAC"}

package/dist/config/schema.d.ts

@@ -51,7 +51,6 @@ declare const AdapterDeclarationSchema: z.ZodObject<{
     kind: z.ZodEnum<{
         forge: "forge";
         "harness-generation": "harness-generation";
-        "identity-injection": "identity-injection";
     }>;
     module: z.ZodOptional<z.ZodString>;
 }, z.core.$strip>;
@@ -92,6 +91,7 @@ export declare const StoreConfigSchema: z.ZodObject<{
     session: z.ZodObject<{
         branch_prefix: z.ZodString;
         worktrees_path: z.ZodString;
+        workspaces_external: z.ZodDefault<z.ZodBoolean>;
     }, z.core.$strip>;
     write_lifecycle: z.ZodObject<{
         diff_size_ceiling_lines: z.ZodNumber;
@@ -122,15 +122,7 @@ export declare const StoreConfigSchema: z.ZodObject<{
     organize: z.ZodObject<{
         archive_path: z.ZodString;
         rollup_stale_days: z.ZodDefault<z.ZodNumber>;
-    }, z.core.$strip>;
-    identity: z.ZodObject<{
-        path: z.ZodString;
-        files: z.ZodDefault<z.ZodObject<{
-            posture: z.ZodOptional<z.ZodString>;
-            'world-facts': z.ZodOptional<z.ZodString>;
-            'user-facts': z.ZodOptional<z.ZodString>;
-        }, z.core.$strip>>;
-        entry_delimiter: z.ZodDefault<z.ZodString>;
+        mission_path: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>;
     harness: z.ZodObject<{
         procedures_path: z.ZodString;
@@ -141,7 +133,6 @@ export declare const StoreConfigSchema: z.ZodObject<{
         kind: z.ZodEnum<{
             forge: "forge";
             "harness-generation": "harness-generation";
-            "identity-injection": "identity-injection";
         }>;
         module: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;

package/dist/config/schema.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB;;;;GAIG;AACH;;;;;;GAMG;AACH,eAAO,MAAM,wBAAwB,IAAI,CAAC;AAE1C,eAAO,MAAM,mBAAmB;;;;iBAI9B,CAAC;AAqCH;;;;;;GAMG;AACH,QAAA,MAAM,mBAAmB;;;;;iBAKvB,CAAC;AA2CH;;;;;GAKG;AACH,QAAA,MAAM,cAAc;;;;;;;;;iBAQlB,CAAC;AAgDH,QAAA,MAAM,wBAAwB;;;;;;;iBAI5B,CAAC;AAEH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAkBd,CAAC;AAEjB,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,cAAc,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,cAAc,CAAC,CAAC;AAC5D,MAAM,MAAM,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC"}

package/dist/config/schema.js

@@ -76,9 +76,17 @@ const RetrievalSchema = z.object({
 const GitSchema = z.object({
     default_branch: z.string().min(1),
 });
+/**
+ * write-lifecycle spec: `workspaces_external: true` marks a store whose
+ * session worktrees are created/removed by a process outside `ctxr` (e.g. an
+ * external agent-runtime WebUI) — `ctxr session reap` refuses to run rather
+ * than touch a worktree it does not own. Defaults to `false`, the prior
+ * behavior, for every store that does not set it.
+ */
 const SessionSchema = z.object({
     branch_prefix: z.string().min(1),
     worktrees_path: z.string().min(1),
+    workspaces_external: z.boolean().default(false),
 });
 /** session-capture-command spec (D5): declaring any path here turns the sanctioned-location gate on; empty (the default) leaves every in-store path accepted. */
 const WriteLifecycleSchema = z.object({
@@ -123,26 +131,15 @@ const OrganizeSchema = z.object({
     archive_path: z.string().min(1),
     /** store-primitives-from-migration-audit spec (D4): the grace period, in days, before a stale rollup is reported — bounds noise from a backlink edited moments ago. */
     rollup_stale_days: z.number().int().nonnegative().default(7),
-});
-/**
- * session-capture-command spec (D3): each identity role MAY be bound to its
- * own store-relative path — a store whose runtime keeps memory elsewhere
- * points the role there, and every identity consumer resolves through it.
- * An unbound role falls back to its canonical file under `identity.path`.
- */
-const IdentityFilesSchema = z
-    .object({
-    posture: z.string().min(1).optional(),
-    'world-facts': z.string().min(1).optional(),
-    'user-facts': z.string().min(1).optional(),
-})
-    .default({});
-/** agent-identity spec: canonical identity files live here, excluded from every retrieval leg. */
-const IdentitySchema = z.object({
-    path: z.string().min(1),
-    files: IdentityFilesSchema,
-    /** session-capture-command spec (D4): the entry delimiter line; '' means an empty (blank) line. */
-    entry_delimiter: z.string().default(''),
+    /**
+     * context-organize spec: the store's standing current-state document
+     * (priorities, active builds, back burner, sunset candidates, debt).
+     * Unset by default — no mission mechanism until an operator opts in.
+     * Content is written via `ctxr rollup write` exactly like an entity
+     * rollup; `ctxr rollup stale` reports this one path stale on elapsed
+     * time rather than backlinks (see `checkMissionStaleness`).
+     */
+    mission_path: z.string().min(1).optional(),
 });
 /** harness-portability spec: the portable procedure pack and operator convention docs AGENTS.md's indexes point into. */
 const HarnessSchema = z.object({
@@ -155,7 +152,7 @@ const HarnessSchema = z.object({
  * v1 resolves every entry against the built-in adapter registry by
  * (kind, id).
  */
-const AdapterKindSchema = z.enum(['harness-generation', 'identity-injection', 'forge']);
+const AdapterKindSchema = z.enum(['harness-generation', 'forge']);
 const AdapterDeclarationSchema = z.object({
     id: z.string().min(1),
     kind: AdapterKindSchema,
@@ -176,7 +173,6 @@ export const StoreConfigSchema = z
     disclosure: DisclosureSchema,
     ingest: IngestSchema,
     organize: OrganizeSchema,
-    identity: IdentitySchema,
     harness: HarnessSchema,
     adapters: z.array(AdapterDeclarationSchema),
 })

package/dist/config/schema.js.map

@@ -1 +1 @@
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package/dist/core/agents-doc.d.ts

@@ -65,16 +65,4 @@ export declare function renderConventionsSection(config: StoreConfig, convention
 export declare function buildAgentsConventionsSection(root: string, config: StoreConfig): Promise<{
     changed: boolean;
 }>;
-/**
- * agent-identity spec (contexture-home-layout): identity reachable open-box
- * — a harness with no identity-injection adapter that reads only AGENTS.md
- * still learns which files carry identity and that they load at session
- * start. References by path only, never inlined content, so editing an
- * identity file never requires regenerating this section.
- */
-export declare const AGENTS_MD_IDENTITY_FENCE: import("./markers.js").Fence;
-export declare function renderIdentitySection(config: StoreConfig): string[];
-export declare function buildAgentsIdentitySection(root: string, config: StoreConfig): Promise<{
-    changed: boolean;
-}>;
 //# sourceMappingURL=agents-doc.d.ts.map

package/dist/core/agents-doc.d.ts.map

@@ -1 +1 @@
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package/dist/core/agents-doc.js

@@ -3,7 +3,6 @@ import { GRAPH_DOCUMENT_RELATIVE_PATH } from './graph/persist.js';
 import { CONFIG_FILE_NAME } from './root.js';
 import { excludedPrefixesFor } from './notes/list.js';
 import { scanConventions } from './conventions.js';
-import { identityFilePaths } from './identity.js';
 import { scanProcedures } from './procedures.js';
 import { upsertFencedRegionInFile } from './fs/fenced-region.js';
 import { htmlCommentFence } from './markers.js';
@@ -120,6 +119,26 @@ export async function buildAgentsPlacementSection(root, config) {
  * (the spec's own "Reading only AGENTS.md is sufficient" scenario).
  */
 export const AGENTS_MD_CANONICAL_FENCE = htmlCommentFence('canonical');
+/**
+ * context-organize spec: when `organize.mission_path` is configured, the
+ * canonical section names it as a document to load at session start,
+ * immediately after the identity-boundary paragraph. Content is written and
+ * its staleness reported through the existing rollup mechanism (`ctxr
+ * rollup write` / `ctxr rollup stale`) — this pointer only names the path,
+ * it names no mechanism of its own. Nothing is rendered when unset, so a
+ * store that never configures it sees this line disappear entirely, not a
+ * placeholder.
+ */
+function renderMissionPointer(config) {
+    const { mission_path: missionPath } = config.organize;
+    if (!missionPath)
+        return [];
+    return [
+        '',
+        `Load \`${missionPath}\` at the start of every session — this store's standing current-state document, ` +
+            'kept current by the mission skill (see the procedure index below) and written through `ctxr rollup write`.',
+    ];
+}
 export function renderCanonicalSection(config, procedures) {
     const lines = [
         '## Store fundamentals',
@@ -143,6 +162,13 @@ export function renderCanonicalSection(config, procedures) {
             'session start` creates one, then `ctxr session submit` validates, commits, pushes, and opens (or ' +
             'reports how to open) a pull request. Do not edit files in the store root directly.',
         '',
+        '### Identity and memory',
+        '',
+        'Identity, persona, and durable cross-session memory for the agent working this store belong to its harness, ' +
+            'not to this store — the store holds knowledge and procedures, documented as portable markdown under ' +
+            `\`${config.harness.procedures_path}\` (see the procedure index below), never a persona or memory file of its own.`,
+        ...renderMissionPointer(config),
+        '',
         '### Procedure index',
         '',
         'Judgment-driven operations, documented as portable markdown under ' +
@@ -165,45 +191,24 @@ export async function buildAgentsCanonicalSection(root, config) {
  * operator-authored, so an empty store's section explains the mechanism.
  */
 export const AGENTS_MD_CONVENTIONS_FENCE = htmlCommentFence('store-conventions');
+const HARNESS_SPECIFIC_NOTE_GUIDANCE = 'A note that applies to only one agent harness (not every harness reading this store) belongs below ' +
+    "that harness's own managed import in its own entry file, never here — every file in this directory " +
+    'is indexed into every harness\'s entry document equally.';
 export function renderConventionsSection(config, conventions) {
     const lines = ['## Store conventions', ''];
     if (conventions.length === 0) {
-        lines.push(`This store declares no convention documents yet. Operator-authored conventions (content style, field`, `semantics, house rules) belong as markdown files under \`${config.harness.conventions_path}\` — each is`, 'indexed here on regeneration, referenced by path, never inlined.');
+        lines.push(`This store declares no convention documents yet. Operator-authored conventions (content style, field`, `semantics, house rules) belong as markdown files under \`${config.harness.conventions_path}\` — each is`, 'indexed here on regeneration, referenced by path, never inlined.', '', HARNESS_SPECIFIC_NOTE_GUIDANCE);
         return lines;
     }
     lines.push('Operator-authored conventions for this store — read the ones relevant to your task:', '');
     for (const doc of conventions) {
         lines.push(`- [${doc.title}](${doc.path})${doc.description ? ` — ${doc.description}` : ''}`);
     }
+    lines.push('', HARNESS_SPECIFIC_NOTE_GUIDANCE);
     return lines;
 }
 export async function buildAgentsConventionsSection(root, config) {
     const conventions = await scanConventions(root, config);
     return upsertFencedRegionInFile(agentsMdPath(root), AGENTS_MD_CONVENTIONS_FENCE, renderConventionsSection(config, conventions));
 }
-/**
- * agent-identity spec (contexture-home-layout): identity reachable open-box
- * — a harness with no identity-injection adapter that reads only AGENTS.md
- * still learns which files carry identity and that they load at session
- * start. References by path only, never inlined content, so editing an
- * identity file never requires regenerating this section.
- */
-export const AGENTS_MD_IDENTITY_FENCE = htmlCommentFence('agent-identity');
-export function renderIdentitySection(config) {
-    const paths = identityFilePaths(config);
-    return [
-        '## Agent identity — load at session start',
-        '',
-        'This store carries durable agent identity as plain files. Before doing anything else in a session,',
-        'read all three (harnesses with a native injection mechanism may already have loaded them for you):',
-        '',
-        ...paths.map((p) => `- \`${p}\``),
-        '',
-        'They are identity, not knowledge: excluded from every retrieval leg, and never edited as part of',
-        'ordinary note work.',
-    ];
-}
-export async function buildAgentsIdentitySection(root, config) {
-    return upsertFencedRegionInFile(agentsMdPath(root), AGENTS_MD_IDENTITY_FENCE, renderIdentitySection(config));
-}
 //# sourceMappingURL=agents-doc.js.map

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package/dist/core/checks/integrity-checks.d.ts

@@ -19,5 +19,21 @@ export declare const graphDanglingLinksCheck: import("./types.js").CheckDefiniti
 export declare const schemaVersionCurrencyCheck: import("./types.js").CheckDefinition;
 /** store-integrity spec: "adapter compatibility (per adapters)." */
 export declare const adapterCompatibilityCheck: import("./types.js").CheckDefinition;
+/**
+ * harness-portability spec: "A harness-specific entry file only imports" —
+ * SHALL contain nothing beyond the adapter's own managed import plus that
+ * harness's own extras, and SHALL NOT duplicate canonical content. Exact
+ * prose duplication is undecidable to check in general (paraphrase, partial
+ * copy, reordering), so this catches the concrete failure mode the
+ * requirement is aimed at: a section heading also present in AGENTS.md,
+ * copy-pasted into the entry file outside its managed fence — the way an
+ * operator reaching for "where do I put a Claude-only note" might otherwise
+ * duplicate a whole AGENTS.md section into CLAUDE.md instead of writing a
+ * harness-specific extra beneath the import (see the `store-conventions`
+ * fence's own guidance in `agents-doc.ts`).
+ */
+export declare const harnessEntryNoDuplicateConventionTextCheck: import("./types.js").CheckDefinition;
+/** store-integrity spec: "no unrecognized top-level config keys." */
+export declare const noUnrecognizedConfigKeysCheck: import("./types.js").CheckDefinition;
 export declare const INTEGRITY_CHECKS: import("./types.js").CheckDefinition[];
 //# sourceMappingURL=integrity-checks.d.ts.map

package/dist/core/checks/integrity-checks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"integrity-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/integrity-checks.ts"],"names":[],"mappings":"AAwBA;;;;;;;GAOG;AACH,eAAO,MAAM,6BAA6B,sCAkCxC,CAAC;AAEH;;;;;;GAMG;AAGH,eAAO,MAAM,uBAAuB,sCAoBlC,CAAC;AAEH,6EAA6E;AAC7E,eAAO,MAAM,0BAA0B,sCAsBrC,CAAC;AAEH,oEAAoE;AACpE,eAAO,MAAM,yBAAyB,sCAuBpC,CAAC;AAYH;;;;;;;;;;;;GAYG;AACH,eAAO,MAAM,0CAA0C,sCAgDrD,CAAC;AAEH,qEAAqE;AACrE,eAAO,MAAM,6BAA6B,sCAgBxC,CAAC;AAEH,eAAO,MAAM,gBAAgB,wCAO5B,CAAC"}

package/dist/core/checks/integrity-checks.js

@@ -1,8 +1,24 @@
-import { resolveAdapter } from '../../adapters/registry.js';
-import { SUPPORTED_SCHEMA_VERSION } from '../../config/schema.js';
+import { readFile } from 'node:fs/promises';
+import path from 'node:path';
+import { configuredAdapters, resolveAdapter } from '../../adapters/registry.js';
+import { StoreConfigSchema, SUPPORTED_SCHEMA_VERSION } from '../../config/schema.js';
+import { agentsMdPath } from '../agents-doc.js';
 import { checkCatalogStale } from '../catalog/build.js';
+import { removeFencedRegion } from '../fs/fenced-region.js';
 import { buildGraphFromNotes, graphBuildOptions } from '../graph/model.js';
+import { harnessEntryFence } from '../markers.js';
 import { defineCheck } from './types.js';
+/**
+ * store-integrity spec: "unrecognized top-level config keys." StoreConfigSchema
+ * is `.passthrough()` (config/schema.ts — deliberately loose, so a later
+ * package version's additive field never forces every existing store through
+ * a migration). Passthrough's cost is that a REMOVED key — e.g. `identity`,
+ * dropped by remove-agent-identity — is silently carried through as dead
+ * config instead of surfacing anywhere; this check closes that gap generically
+ * (any key StoreConfigSchema doesn't declare, not just `identity` by name), so
+ * the safety net promised at removal time actually exists.
+ */
+const KNOWN_TOP_LEVEL_CONFIG_KEYS = new Set(Object.keys(StoreConfigSchema.shape));
 /**
  * store-integrity spec (task 9.3): "derived-artifact staleness." Covers
  * both derived legs in one check — the catalog's confirmed-gloss hash
@@ -123,10 +139,100 @@ export const adapterCompatibilityCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+const MARKDOWN_HEADING_RE = /^#{1,6}\s+(.+)$/gm;
+function headingsOf(text) {
+    const headings = new Set();
+    for (const match of text.matchAll(MARKDOWN_HEADING_RE)) {
+        headings.add(match[1].trim().toLowerCase());
+    }
+    return headings;
+}
+/**
+ * harness-portability spec: "A harness-specific entry file only imports" —
+ * SHALL contain nothing beyond the adapter's own managed import plus that
+ * harness's own extras, and SHALL NOT duplicate canonical content. Exact
+ * prose duplication is undecidable to check in general (paraphrase, partial
+ * copy, reordering), so this catches the concrete failure mode the
+ * requirement is aimed at: a section heading also present in AGENTS.md,
+ * copy-pasted into the entry file outside its managed fence — the way an
+ * operator reaching for "where do I put a Claude-only note" might otherwise
+ * duplicate a whole AGENTS.md section into CLAUDE.md instead of writing a
+ * harness-specific extra beneath the import (see the `store-conventions`
+ * fence's own guidance in `agents-doc.ts`).
+ */
+export const harnessEntryNoDuplicateConventionTextCheck = defineCheck({
+    id: 'adapters.harness_entry_no_duplicate_convention_text',
+    title: 'A harness entry file carries no convention text already indexed in AGENTS.md',
+    severity: 'invariant',
+    capability: 'harness-portability',
+    scopes: ['store'],
+    async run(ctx) {
+        const adapters = configuredAdapters(ctx.config, 'harness-generation');
+        if (adapters.length === 0) {
+            return { status: 'pass', findings: [] };
+        }
+        let agentsMdContent;
+        try {
+            agentsMdContent = await readFile(agentsMdPath(ctx.storeRoot), 'utf8');
+        }
+        catch (err) {
+            if (err.code === 'ENOENT') {
+                return { status: 'skip', skipReason: 'AGENTS.md has not been generated yet — run `ctxr update`', findings: [] };
+            }
+            throw err;
+        }
+        const agentsMdHeadings = headingsOf(agentsMdContent);
+        const findings = [];
+        for (const adapter of adapters) {
+            let entryContent;
+            try {
+                entryContent = await readFile(path.join(ctx.storeRoot, adapter.entryFileName), 'utf8');
+            }
+            catch (err) {
+                if (err.code === 'ENOENT')
+                    continue; // nothing generated for this adapter yet
+                throw err;
+            }
+            const extra = removeFencedRegion(entryContent, harnessEntryFence(adapter.id)).text;
+            for (const heading of headingsOf(extra)) {
+                if (agentsMdHeadings.has(heading)) {
+                    findings.push({
+                        code: 'adapters.harness_entry_duplicates_agents_md',
+                        severity: 'error',
+                        message: `"${adapter.entryFileName}" duplicates AGENTS.md's "${heading}" section outside its managed import — canonical content belongs only in AGENTS.md; a harness-specific extra belongs below the import instead.`,
+                        subject: adapter.entryFileName,
+                        details: { heading },
+                    });
+                }
+            }
+        }
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
+/** store-integrity spec: "no unrecognized top-level config keys." */
+export const noUnrecognizedConfigKeysCheck = defineCheck({
+    id: 'store.no_unrecognized_config_keys',
+    title: 'contexture.yaml declares no top-level key StoreConfigSchema doesn\'t recognize',
+    severity: 'invariant',
+    capability: 'store-integrity',
+    scopes: ['store'],
+    async run(ctx) {
+        const unrecognized = Object.keys(ctx.config).filter((key) => !KNOWN_TOP_LEVEL_CONFIG_KEYS.has(key));
+        const findings = unrecognized.map((key) => ({
+            code: 'store.unrecognized_config_key',
+            severity: 'error',
+            message: `contexture.yaml has a top-level "${key}" key that this version of contexture doesn't recognize — a config schema this old, or a capability retired in a later release. Remove it, or check contexture's changelog for a migration note.`,
+            subject: key,
+        }));
+        return { status: findings.length > 0 ? 'fail' : 'pass', findings };
+    },
+});
 export const INTEGRITY_CHECKS = [
     derivedArtifactStalenessCheck,
     graphDanglingLinksCheck,
     schemaVersionCurrencyCheck,
     adapterCompatibilityCheck,
+    harnessEntryNoDuplicateConventionTextCheck,
+    noUnrecognizedConfigKeysCheck,
 ];
 //# sourceMappingURL=integrity-checks.js.map

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package/dist/core/checks/manifest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAS5C,CAAC"}
+{"version":3,"file":"manifest.d.ts","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,YAAY,CAAC;AAElD;;;GAGG;AACH,eAAO,MAAM,MAAM,EAAE,SAAS,eAAe,EAQ5C,CAAC"}

package/dist/core/checks/manifest.js

@@ -1,6 +1,5 @@
 import { CATALOG_CHECKS } from './catalog-checks.js';
 import { DISCLOSURE_CHECKS } from './disclosure-checks.js';
-import { IDENTITY_CHECKS } from './identity-checks.js';
 import { INTEGRITY_CHECKS } from './integrity-checks.js';
 import { failClosedVisibilityCheck, failClosedVisibilityInvariantCheck } from '../notes/checks.js';
 import { ORGANIZE_CHECKS } from './organize-checks.js';
@@ -16,7 +15,6 @@ export const CHECKS = [
     ...CATALOG_CHECKS,
     ...ORGANIZE_CHECKS,
     ...DISCLOSURE_CHECKS,
-    ...IDENTITY_CHECKS,
     ...INTEGRITY_CHECKS,
 ];
 //# sourceMappingURL=manifest.js.map

package/dist/core/checks/manifest.js.map

@@ -1 +1 @@
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+{"version":3,"file":"manifest.js","sourceRoot":"","sources":["../../../src/core/checks/manifest.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AACzD,OAAO,EAAE,yBAAyB,EAAE,kCAAkC,EAAE,MAAM,oBAAoB,CAAC;AACnG,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,6BAA6B,CAAC;AAGrE;;;GAGG;AACH,MAAM,CAAC,MAAM,MAAM,GAA+B;IAChD,yBAAyB;IACzB,kCAAkC;IAClC,GAAG,sBAAsB;IACzB,GAAG,cAAc;IACjB,GAAG,eAAe;IAClB,GAAG,iBAAiB;IACpB,GAAG,gBAAgB;CACpB,CAAC"}

package/dist/core/errors.d.ts

@@ -42,6 +42,15 @@ export declare class SessionNotFoundError extends ContextureError {
 export declare class SessionValidationFailedError extends ContextureError {
     constructor(findings: Finding[]);
 }
+/**
+ * write-lifecycle spec: `session.workspaces_external: true` marks a store
+ * whose worktrees are created/removed by a process outside `ctxr` — `ctxr
+ * session reap` refuses before inspecting or modifying any worktree, rather
+ * than reclaiming something it does not own.
+ */
+export declare class SessionReapWorkspacesExternalError extends ContextureError {
+    constructor();
+}
 export declare class NoRemoteConfiguredError extends ContextureError {
     constructor();
 }
@@ -68,16 +77,20 @@ export declare class PullRequestNotMergeableError extends ContextureError {
 export declare class MergeNotConfirmedError extends ContextureError {
     constructor(number: number);
 }
-/** session-capture-command spec (D4): zero or several matches both refuse — an ambiguous edit is worse than a missed one. */
-export declare class IdentityEntryMatchError extends ContextureError {
-    constructor(filePath: string, match: string, count: number);
-}
-export declare class UnknownIdentityRoleError extends ContextureError {
-    constructor(given: string, knownRoles: readonly string[]);
-}
-/** session-capture-command spec (D2): a proposal file that cannot even be read or parsed fails the whole command — there is nothing to apply item by item. */
+/**
+ * session-capture-command spec (D2): a proposal file that cannot even be
+ * read or parsed fails the whole command — there is nothing to apply item
+ * by item. `detail` covers that case (a plain message: unreadable file,
+ * unparseable YAML); `issues` covers the proposal parsing but failing
+ * `CaptureProposalSchema` (unsupported keys, malformed note items) —
+ * remove-agent-identity's zod-validated replacement for a hand-rolled key
+ * filter, mirroring InvalidConfigError/InvalidTaxonomyFileError's shape.
+ */
 export declare class InvalidCaptureProposalError extends ContextureError {
-    constructor(filePath: string, detail: string);
+    constructor(filePath: string, detail: string | readonly {
+        path: string;
+        message: string;
+    }[]);
 }
 export declare class CheckAudienceRequiredError extends ContextureError {
     constructor();

package/dist/core/errors.d.ts.map

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