ctxr-cli 0.19.0 → 0.20.0

package/README.md

@@ -58,7 +58,7 @@ CLAUDE.md                     harness entry file; a one-line managed import of A
   hooks/                      the write-gate shim
   skills/ -> ../.agents/skills   a bridge, so Claude Code auto-discovers the canonical skills
 .agents/skills/               THE canonical skills location, read natively by most harnesses
-  ctxr-*/SKILL.md               15 contexture-owned skills (refreshed by `ctxr update`)
+  ctxr-*/SKILL.md               16 contexture-owned skills (refreshed by `ctxr update`)
   frontend-design/, eli5/       vendored third-party skills, with licenses and provenance
 .contexture/guidance/
   house-conventions.md        your store's own rules — inlined into AGENTS.md verbatim
@@ -97,7 +97,7 @@ Two distinctions make the rest of this readable:
 
 **`AGENTS.md`**, with six managed sections: *Store fundamentals* (root resolution, the frontmatter schema, the write path), *Mission*, *Retrieval: which leg to use*, *Capturing and ingesting*, *Placing a new note* (rendered from your actual taxonomy layers), and *Store conventions*.
 
-**The skills**, installed as full copies at `.agents/skills/ctxr-<name>/SKILL.md`. That path is the cross-harness canonical location; a harness that reads its own branded directory instead gets that directory bridged to it (`.claude/skills/` is a symlink), so skill auto-discovery works with no wrapper and no second copy. A harness without auto-discovery reaches the same file by path from `AGENTS.md`. They're contexture-owned — refreshed by `ctxr update`, never hand-edited — and they're written against *your* store's configured taxonomy, so no shipped profile's layer names leak into them. Your own skills live alongside, untouched by sync.
+**The skills**, installed as full copies at `.agents/skills/ctxr-<name>/SKILL.md`. That path is the cross-harness canonical location; a harness that reads its own branded directory instead gets that directory bridged to it (`.claude/skills/` is a symlink), so skill auto-discovery works with no wrapper and no second copy. A harness without auto-discovery reaches the same file by path from `AGENTS.md`. They're contexture-owned — refreshed by `ctxr update`, never hand-edited — and they're written against *your* store's configured taxonomy, so no shipped profile's layer names leak into them. Your own skills live alongside, untouched by sync. An owned skill may carry files beside its `SKILL.md` — `ctxr-second-opinion` ships the script that runs its reviewers — and update keeps that whole directory matching the package.
 
 | Skill | What it decides |
 | --- | --- |
@@ -115,6 +115,8 @@ Two distinctions make the rest of this readable:
 | `ctxr-submit` | Everything up to and including opening the pull request |
 | `ctxr-land` | Merging after review, and reclaiming the worktree |
 | `ctxr-session-capture` | What a finished session produced that is worth keeping |
+| `ctxr-upgrade` | Whether to upgrade the installed CLI now, and asking before it does |
+| `ctxr-second-opinion` | Whether a plan or a taste call needs three different model families, and how to weigh what they say |
 
 Your house rules go in `.contexture/guidance/house-conventions.md`. It's inlined into `AGENTS.md`'s *Store conventions* section in full, so it loads for every harness at the start of every session — there's no separate file an agent has to remember to open.
 

package/dist/config/defaults.d.ts

@@ -28,17 +28,20 @@ export declare const DEFAULT_SKILLS_PATH = ".agents/skills/";
  */
 export declare const DEFAULT_VENDORED_SKILLS: readonly ['frontend-design', 'eli5'];
 /**
- * harness-portability spec: the guidance directory holding contexture's
- * shipped baseline convention file, the operator's own convention files
- * (inlined into AGENTS.md's "Store conventions" section — see
- * agents-doc.ts, from inline-conventions-and-mission), and (per
- * context-organize) the mission document.
+ * harness-portability spec: the guidance directory holding the operator's
+ * own convention files (inlined into AGENTS.md's "Store conventions" section
+ * after the shipped baseline, which is rendered there and never filed here —
+ * see agents-doc.ts) and (per context-organize) the mission document.
  */
 export declare const DEFAULT_GUIDANCE_PATH = ".contexture/guidance/";
-/** The shipped, contexture-owned baseline conventions — never hand-edited; refreshed by `ctxr update` like a skill copy. */
+/**
+ * Where earlier versions wrote the shipped baseline as a file in the guidance
+ * directory. It is now rendered straight into AGENTS.md; `removeManagedBaselineFile`
+ * deletes a copy left at this name when it still carries the managed-owner header.
+ */
 export declare const DEFAULT_BASELINE_CONVENTIONS_FILE_NAME = "baseline-conventions.md";
 /**
- * The baseline file's pre-rename name. `syncBaselineConventions` removes it
+ * The baseline file's pre-rename name. `removeManagedBaselineFile` removes it
  * when it still carries the managed-owner header, so the rename leaves no
  * orphan — the guidance directory is scanned wholesale, so an orphan would
  * be inlined into AGENTS.md a second time rather than merely sitting unused.

package/dist/config/defaults.d.ts.map

@@ -1 +1 @@
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package/dist/config/defaults.js

@@ -27,17 +27,20 @@ export const DEFAULT_SKILLS_PATH = '.agents/skills/';
  */
 export const DEFAULT_VENDORED_SKILLS = ['frontend-design', 'eli5'];
 /**
- * harness-portability spec: the guidance directory holding contexture's
- * shipped baseline convention file, the operator's own convention files
- * (inlined into AGENTS.md's "Store conventions" section — see
- * agents-doc.ts, from inline-conventions-and-mission), and (per
- * context-organize) the mission document.
+ * harness-portability spec: the guidance directory holding the operator's
+ * own convention files (inlined into AGENTS.md's "Store conventions" section
+ * after the shipped baseline, which is rendered there and never filed here —
+ * see agents-doc.ts) and (per context-organize) the mission document.
  */
 export const DEFAULT_GUIDANCE_PATH = '.contexture/guidance/';
-/** The shipped, contexture-owned baseline conventions — never hand-edited; refreshed by `ctxr update` like a skill copy. */
+/**
+ * Where earlier versions wrote the shipped baseline as a file in the guidance
+ * directory. It is now rendered straight into AGENTS.md; `removeManagedBaselineFile`
+ * deletes a copy left at this name when it still carries the managed-owner header.
+ */
 export const DEFAULT_BASELINE_CONVENTIONS_FILE_NAME = 'baseline-conventions.md';
 /**
- * The baseline file's pre-rename name. `syncBaselineConventions` removes it
+ * The baseline file's pre-rename name. `removeManagedBaselineFile` removes it
  * when it still carries the managed-owner header, so the rename leaves no
  * orphan — the guidance directory is scanned wholesale, so an orphan would
  * be inlined into AGENTS.md a second time rather than merely sitting unused.

package/dist/config/defaults.js.map

@@ -1 +1 @@
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package/dist/config/schema.js

@@ -263,9 +263,9 @@ const OrganizeSchema = z
 });
 /**
  * harness-portability spec: the portable skill pack and the guidance
- * documents (a shipped baseline convention file, the operator's own
- * convention files, and the mission document) AGENTS.md's generated
- * sections read from and inline.
+ * documents (the operator's own convention files and the mission document)
+ * AGENTS.md's generated sections read from and inline. The shipped baseline
+ * is rendered into AGENTS.md directly, never read from this directory.
  *
  * `skills_path` and `guidance_path` are the only spellings. Their pre-rename
  * names `procedures_path` and `conventions_path` were accepted here as inputs

package/dist/core/checks/write-lifecycle-checks.d.ts

@@ -15,6 +15,14 @@ export declare const stagedSecretScanCheck: import("./types.js").CheckDefinition
  * write time, so the two can never disagree.
  */
 export declare const stagedPathAllowlistCheck: import("./types.js").CheckDefinition;
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: the ceiling bounds what an
+ * agent can stage unreviewed, and contexture's own writes are not that — a fresh
+ * `init` stages every owned and vendored skill in one commit. A staged file is
+ * left out of the count when its staged content is byte-identical to what the
+ * installed version ships for its path. Identity, not location: a file that
+ * differs by one byte, one that is not shipped, and every deletion count in full.
+ */
 export declare const stagedDiffSizeCeilingCheck: import("./types.js").CheckDefinition;
 /**
  * store-scope (not staged): are both hooks present with current content,

package/dist/core/checks/write-lifecycle-checks.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"write-lifecycle-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/write-lifecycle-checks.ts"],"names":[],"mappings":"AAaA;;;;GAIG;AACH,eAAO,MAAM,4BAA4B,sCAyCvC,CAAC;AAEH,eAAO,MAAM,yBAAyB,sCAsBpC,CAAC;AAEH,eAAO,MAAM,qBAAqB,sCAqBhC,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,wBAAwB,sCAqCnC,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,0BAA0B,sCAgCrC,CAAC;AAEH;;;;;GAKG;AACH,eAAO,MAAM,gBAAgB,sCAiC3B,CAAC;AAEH,eAAO,MAAM,sBAAsB,wCAOlC,CAAC"}

package/dist/core/checks/write-lifecycle-checks.js

@@ -5,6 +5,7 @@ import { parseNoteText } from '../notes/parse.js';
 import { scanForSecrets } from '../security/secrets.js';
 import { validateFenceIntegrity } from '../fs/fenced-region.js';
 import { sanctionedPath } from '../write-lifecycle/path-gate.js';
+import { shippedSkillFiles } from '../skills.js';
 import { defineCheck } from './types.js';
 const CONFIG_FILE_NAME = 'contexture.yaml';
 /**
@@ -148,6 +149,14 @@ export const stagedPathAllowlistCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: the ceiling bounds what an
+ * agent can stage unreviewed, and contexture's own writes are not that — a fresh
+ * `init` stages every owned and vendored skill in one commit. A staged file is
+ * left out of the count when its staged content is byte-identical to what the
+ * installed version ships for its path. Identity, not location: a file that
+ * differs by one byte, one that is not shipped, and every deletion count in full.
+ */
 export const stagedDiffSizeCeilingCheck = defineCheck({
     id: 'staged.diff_size_ceiling',
     title: 'Total staged diff size is under the configured ceiling',
@@ -155,17 +164,27 @@ export const stagedDiffSizeCeilingCheck = defineCheck({
     capability: 'write-lifecycle',
     scopes: ['staged'],
     async run(ctx) {
-        const total = (ctx.staged ?? []).reduce((sum, file) => sum + (file.addedLines ?? 0) + (file.removedLines ?? 0), 0);
+        const shipped = await shippedSkillFiles(ctx.config);
+        let total = 0;
+        let leftOut = 0;
+        for (const file of ctx.staged ?? []) {
+            const lines = (file.addedLines ?? 0) + (file.removedLines ?? 0);
+            if (file.status !== 'D' && file.content !== undefined && shipped.get(file.path) === file.content)
+                leftOut += lines;
+            else
+                total += lines;
+        }
         const ceiling = ctx.config.write_lifecycle.diff_size_ceiling_lines;
         if (total > ceiling) {
+            const note = leftOut > 0 ? ` (${leftOut} more changed lines are skill files identical to what this version ships, and are not counted)` : '';
             return {
                 status: 'fail',
                 findings: [
                     {
                         code: 'staged.diff_size_ceiling.exceeded',
                         severity: 'error',
-                        message: `Staged changes total ${total} changed lines, exceeding the configured ceiling of ${ceiling}.`,
-                        details: { total, ceiling },
+                        message: `Staged changes total ${total} changed lines, exceeding the configured ceiling of ${ceiling}${note}.`,
+                        details: { total, ceiling, left_out: leftOut },
                     },
                 ],
             };

package/dist/core/checks/write-lifecycle-checks.js.map

@@ -1 +1 @@
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package/dist/core/conventions.d.ts

@@ -32,10 +32,9 @@ export declare function extractDocMetadata(raw: string, relativePath: string): S
 export declare function inlineDocBody(doc: ScannedDoc, headingOffset: number): string[];
 export declare function scanDocsDir(root: string, dirRelativePath: string): Promise<ScannedDoc[]>;
 /**
- * Every convention doc currently at the configured guidance path —
- * contexture's own shipped baseline (see `templates/conventions/baseline-conventions.md`,
- * synced by `syncBaselineConventions` in `convention-doc.ts`) alongside
- * whatever the operator has added — minus the mission document.
+ * Every convention doc the operator has put at the configured guidance path,
+ * minus the mission document. The shipped baseline is not among them: it is
+ * rendered into AGENTS.md by `renderBaselineConventions` in `convention-doc.ts`.
  */
 export declare function scanConventions(root: string, config: StoreConfig): Promise<ScannedDoc[]>;
 //# sourceMappingURL=conventions.d.ts.map

package/dist/core/conventions.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conventions.d.ts","sourceRoot":"","sources":["../../src/core/conventions.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAIvD;;;;;;;;GAQG;AACH,MAAM,WAAW,UAAU;IACzB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;CACd;AAID,oGAAoG;AACpG,eAAO,MAAM,eAAe,aAAa,CAAC;AAE1C,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,UAAU,CA4BhF;AAID;;;;;;;;;GASG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,GAAG,MAAM,EAAE,CAyB9E;AAED,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAgC9F;AAgBD;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAI9F"}

package/dist/core/conventions.js

@@ -122,10 +122,9 @@ function reservedGuidanceFileNames(config) {
     return names;
 }
 /**
- * Every convention doc currently at the configured guidance path —
- * contexture's own shipped baseline (see `templates/conventions/baseline-conventions.md`,
- * synced by `syncBaselineConventions` in `convention-doc.ts`) alongside
- * whatever the operator has added — minus the mission document.
+ * Every convention doc the operator has put at the configured guidance path,
+ * minus the mission document. The shipped baseline is not among them: it is
+ * rendered into AGENTS.md by `renderBaselineConventions` in `convention-doc.ts`.
  */
 export async function scanConventions(root, config) {
     const docs = await scanDocsDir(root, config.harness.guidance_path);

package/dist/core/conventions.js.map

@@ -1 +1 @@
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package/dist/core/reconcile.js

@@ -68,9 +68,9 @@ export async function reconcileStore(env, root, config) {
     // themselves are current, so a freshly created bridge or copy reflects
     // this run's content, not a stale one.
     changed.push(...(await bridgeHarnessSkills(root, config)).map((r) => r.path));
-    // Same reason, same ordering constraint as skills: the shipped baseline
-    // convention file must be current on disk BEFORE buildAgentsConventionsSection
-    // scans the guidance directory and inlines it (compose-store-guidance-documents).
+    // A managed baseline copy an earlier version wrote must be gone BEFORE
+    // buildAgentsConventionsSection scans the guidance directory, or the
+    // baseline would be inlined twice: once rendered, once scanned.
     note(path.join(config.harness.guidance_path, DEFAULT_BASELINE_CONVENTIONS_FILE_NAME).split(path.sep).join('/'), (await removeManagedBaselineFile(root, config)).changed);
     let agentsChanged = false;
     for (const build of [

package/dist/core/reconcile.js.map

@@ -1 +1 @@
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package/dist/core/skills.d.ts

@@ -73,6 +73,21 @@ export declare function skillPaths(config: StoreConfig): string[];
  */
 export declare function syncShippedSkills(root: string, config: StoreConfig): Promise<string[]>;
 export declare function syncSkillSeeds(root: string, config: StoreConfig, seeds: readonly SkillSeed[]): Promise<string[]>;
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: every path under the
+ * configured skills path, mapped to the exact content the installed version
+ * writes there — each owned skill's SKILL.md, its supporting files, and the
+ * packaged files of each vendored skill the store declares. This is what
+ * `init` and `update` put on disk, so a staged file whose content equals the
+ * entry for its path is contexture's own write and not an edit.
+ *
+ * Vendored provenance records are absent on purpose: each is generated per
+ * store (it carries the installed CLI version), so no packaged file can match
+ * it, and it stays in the diff count. A declared vendored name the package does
+ * not carry is left out here; reporting it is `syncVendoredSkills`' job.
+ * Paths are store-relative and posix, the spelling `skillPaths` and git use.
+ */
+export declare function shippedSkillFiles(config: StoreConfig, seeds?: readonly SkillSeed[]): Promise<Map<string, string>>;
 /**
  * harness-portability spec (vendored-craft-skills): the provenance record
  * a vendored skill carries — packaged once per skill under

package/dist/core/skills.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"skills.d.ts","sourceRoot":"","sources":["../../src/core/skills.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,WAAW,EAAE,mBAAmB,EAAE,MAAM,qBAAqB,CAAC;AAC5E,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAC7C,OAAO,EAAgC,KAAK,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAsCjF;;;;;;;;;;;;;;;;;;;GAmBG;AACH,MAAM,WAAW,KAAK;IACpB,yFAAyF;IACzF,IAAI,EAAE,MAAM,CAAC;IACb,kDAAkD;IAClD,IAAI,EAAE,MAAM,CAAC;IACb,qEAAqE;IACrE,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,uGAAuG;IACvG,eAAe,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC9C;AAED,MAAM,WAAW,SAAS;IACxB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,+FAA+F;IAC/F,IAAI,EAAE,CAAC,MAAM,EAAE,WAAW,KAAK,MAAM,EAAE,CAAC;IACxC,qFAAqF;IACrF,eAAe,CAAC,EAAE,MAAM,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CACrD;AAED,eAAO,MAAM,oBAAoB,wIACiG,CAAC;AAYnI,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,WAAW,GAAG,mBAAmB,EAAE,CAE5E;AAED,wBAAgB,aAAa,CAAC,MAAM,EAAE,WAAW,GAAG,mBAAmB,EAAE,CAExE;AA6OD,eAAO,MAAM,MAAM,EAAE,SAAS,SAAS,EAiBtC,CAAC;AAEF,sGAAsG;AACtG,wBAAgB,YAAY,CAAC,MAAM,EAAE,WAAW,GAAG,KAAK,EAAE,CAEzD;AAYD;;;;;GAKG;AACH,wBAAgB,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAEnF;AAED,wBAAgB,UAAU,CAAC,MAAM,EAAE,WAAW,GAAG,MAAM,EAAE,CAMxD;AAED;;;;;;;;;;;;;;;GAeG;AACH,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAE5F;AAED,wBAAsB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,KAAK,EAAE,SAAS,SAAS,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAmDtH;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAsB,iBAAiB,CAAC,MAAM,EAAE,WAAW,EAAE,KAAK,GAAE,SAAS,SAAS,EAAW,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAiB/H;AAwBD;;;;;;;;;GASG;AACH,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,EAAE,MAAM,CAAC;IAChB;;;;OAIG;IACH,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,iGAAiG;IACjG,MAAM,EAAE,MAAM,CAAC;IACf,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAED,6FAA6F;AAC7F,eAAO,MAAM,6BAA6B,wBAAwB,CAAC;AAyDnE;;;;;;;;;GASG;AACH,wBAAsB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,EAAE,CAAC;IAAC,QAAQ,EAAE,OAAO,EAAE,CAAA;CAAE,CAAC,CA6EpJ"}

package/dist/core/skills.js

@@ -240,6 +240,20 @@ const PUBLISH = {
     description: 'Turn store content into a shareable HTML page for a subtree, note, or entity, resolving its source notes before any content is copied out.',
     body: () => skillTemplate('ctxr-publish').split('\n'),
 };
+/**
+ * ship-a-cross-model-second-opinion-skill: the first owned skill that ships
+ * more than its SKILL.md. The runner and its prompt fragments live under
+ * `templates/skills/ctxr-second-opinion/`, and the body names where the
+ * store's skills path put them. Named for the judgment, not a command: there
+ * is no `ctxr second-opinion`, and the skill drives no ctxr command at all.
+ */
+const SECOND_OPINION = {
+    file: 'ctxr-second-opinion',
+    name: 'Second opinion',
+    description: 'Get an independent critique of a plan, or a poll on a taste call, from three different model families run in parallel, and synthesize their answers without running the plan.',
+    body: (config) => skillTemplate('ctxr-second-opinion').replaceAll('__SKILLS_PATH__', config.harness.skills_path.replace(/\/+$/, '')).split('\n'),
+    supportingFiles: () => skillSupportingFiles('ctxr-second-opinion'),
+};
 export const SKILLS = [
     CAPTURE,
     INGEST_ORCHESTRATION,
@@ -256,6 +270,7 @@ export const SKILLS = [
     DERIVED_ARTIFACTS,
     ORGANIZE_AUDIT,
     PUBLISH,
+    SECOND_OPINION,
 ];
 /** The owned skills, rendered against one store's configuration — what `syncShippedSkills` writes. */
 export function renderSkills(config) {
@@ -355,6 +370,40 @@ export async function syncSkillSeeds(root, config, seeds) {
     }
     return changed;
 }
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: every path under the
+ * configured skills path, mapped to the exact content the installed version
+ * writes there — each owned skill's SKILL.md, its supporting files, and the
+ * packaged files of each vendored skill the store declares. This is what
+ * `init` and `update` put on disk, so a staged file whose content equals the
+ * entry for its path is contexture's own write and not an edit.
+ *
+ * Vendored provenance records are absent on purpose: each is generated per
+ * store (it carries the installed CLI version), so no packaged file can match
+ * it, and it stays in the diff count. A declared vendored name the package does
+ * not carry is left out here; reporting it is `syncVendoredSkills`' job.
+ * Paths are store-relative and posix, the spelling `skillPaths` and git use.
+ */
+export async function shippedSkillFiles(config, seeds = SKILLS) {
+    const shipped = new Map();
+    const at = (...parts) => path.join(config.harness.skills_path, ...parts).split(path.sep).join('/');
+    for (const skill of renderSkillSeeds(seeds, config)) {
+        shipped.set(at(skill.file, SKILL_FILE_NAME), skill.content);
+        for (const [rel, content] of skill.supportingFiles)
+            shipped.set(at(skill.file, rel), content);
+    }
+    for (const name of config.skills.vendored) {
+        try {
+            const { files } = await readVendoredPayload(name);
+            for (const [rel, content] of files)
+                shipped.set(at(name, rel), content);
+        }
+        catch {
+            // not a packaged vendored skill: nothing is shipped for it
+        }
+    }
+    return shipped;
+}
 /** Every file under `dir`, as sorted posix paths relative to it. */
 async function listFilesUnder(dir, sub = '') {
     const out = [];

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package/dist/version.d.ts

@@ -1,5 +1,5 @@
 /** Kept in sync with package.json's "version" field. */
-export declare const CLI_VERSION = "0.19.0";
+export declare const CLI_VERSION = "0.20.0";
 /**
  * The npm package this executable is published as. Bound here, beside the
  * version, because the release check resolves the latest published release by

package/dist/version.js

@@ -1,5 +1,5 @@
 /** Kept in sync with package.json's "version" field. */
-export const CLI_VERSION = '0.19.0';
+export const CLI_VERSION = '0.20.0';
 /**
  * The npm package this executable is published as. Bound here, beside the
  * version, because the release check resolves the latest published release by

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "ctxr-cli",
-  "version": "0.19.0",
+  "version": "0.20.0",
   "description": "Context store for AI coding agents — markdown and git, catalog and graph retrieval, no vector database.",
   "type": "module",
   "license": "MIT",

package/templates/agents/canonical.md

@@ -18,7 +18,7 @@ A new note starts from a template under `__TEMPLATES_PATH__`, not from a blank f
 
 Every write to this store happens inside a session worktree, never directly on the default branch: `ctxr session start` creates one, and the work stays there for as long as the session runs. When the operator asks to wrap up, `ctxr-submit` validates with `ctxr doctor`, commits, pushes, and opens (or reports how to open) a pull request — that request is what triggers it, not having finished a piece of work. Do not edit files in the store root directly.
 
-### Identity and memory
+### Identity and recall
 
-Identity, persona, and durable cross-session memory for the agent working this store belong to its harness, not to this store — the store holds knowledge and skills, documented as portable markdown under `__SKILLS_PATH__`, never a persona or memory file of its own.
+Identity, persona, and the agent's conversational recall — what it remembers of the user and of itself from one session to the next — belong to its harness, not to this store. Subject-matter knowledge belongs here, including anything worth finding again in a later session: the store holds knowledge and skills, documented as portable markdown under `__SKILLS_PATH__`, and never a persona or recall file of its own.
 __MISSION_POINTER__

package/templates/skills/ctxr-second-opinion/run.mjs

@@ -37,7 +37,9 @@ const env = (name, fallback) => process.env[`CTXR_SECOND_OPINION_${name}`] || fa
 function tiers() {
   return {
     strong: {
-      claude: { model: env('CLAUDE_MODEL', 'opus'), effort: env('CLAUDE_EFFORT', 'max') },
+      // `high`, not `max`: the same two-and-a-half-thousand-character plan took Claude 35 s at `high` and 514 s at
+      // `max` (and once timed out at 280 s), with a valid critique both times. `max` stays one variable away.
+      claude: { model: env('CLAUDE_MODEL', 'opus'), effort: env('CLAUDE_EFFORT', 'high') },
       codex: { effort: env('CODEX_EFFORT', 'xhigh') },
       agy: { model: env('AGY_MODEL', 'Gemini 3.1 Pro (High)') },
     },
@@ -49,9 +51,13 @@ function tiers() {
   };
 }
 
-/** The flags this runner passes, so preflight can confirm each CLI still accepts them. */
+/**
+ * The flags this runner passes, so preflight can confirm each CLI's --help still lists them. Only flags
+ * the help text documents belong here: `claude` still accepts a hidden --max-turns, but with `--tools ""`
+ * there is no tool turn to bound, so it is not passed at all.
+ */
 const FLAGS_USED = {
-  claude: { helpArgs: ['--help'], flags: ['--max-turns', '--tools', '--model', '--effort', '--no-session-persistence', '--disable-slash-commands', '--output-format'] },
+  claude: { helpArgs: ['--help'], flags: ['--tools', '--model', '--effort', '--no-session-persistence', '--disable-slash-commands', '--output-format'] },
   codex: { helpArgs: ['exec', '--help'], flags: ['--skip-git-repo-check', '--sandbox', '--ephemeral', '--color', '--config'] },
   agy: { helpArgs: ['--help'], flags: ['--print', '--sandbox', '--disable-slash-commands', '--model'] },
 };
@@ -59,7 +65,7 @@ const FLAGS_USED = {
 class UsageError extends Error {}
 
 function parseArgs(argv) {
-  const opts = { mode: 'critique', tier: 'strong', timeout: 240, only: null, lens: null, out: null, planFile: null, promptFile: null, preflight: false, noWrap: false, seed: null };
+  const opts = { mode: 'critique', tier: 'strong', timeout: 600, only: null, lens: null, out: null, planFile: null, promptFile: null, preflight: false, noWrap: false, seed: null };
   const takesValue = new Set(['--mode', '--tier', '--timeout', '--only', '--lens', '--out', '--plan-file', '--prompt-file', '--seed']);
   for (let i = 0; i < argv.length; i++) {
     const a = argv[i];
@@ -146,7 +152,7 @@ const firstLines = (text, n) => text.trim().split('\n').slice(0, n).join(' | ').
 function buildInvocation(cli, prompt, tier) {
   const t = tiers()[tier][cli];
   if (cli === 'claude') {
-    const args = ['-p', '--max-turns', '1', '--tools', '', '--model', t.model, '--no-session-persistence', '--disable-slash-commands', '--output-format', 'json'];
+    const args = ['-p', '--tools', '', '--model', t.model, '--no-session-persistence', '--disable-slash-commands', '--output-format', 'json'];
     if (t.effort) args.push('--effort', t.effort);
     return { cmd: 'claude', args, stdin: prompt };
   }
@@ -209,7 +215,8 @@ export function parseCritique(text) {
   const findings = [];
   const blocks = text.split(/^### F\d+\b/m).slice(1);
   for (const block of blocks) {
-    const head = /^\s*\[(critical|major|minor)\]\s*(?:confidence\s*=\s*([01](?:\.\d+)?))?/i.exec(block);
+    // Brackets around the severity are what the contract asks for, and models drop them: accept both.
+    const head = /^\s*\[?(critical|major|minor)\]?\s*(?:confidence\s*[=:]\s*([01](?:\.\d+)?))?/i.exec(block);
     const evidence = /^Evidence:\s*(.+)$/im.exec(block)?.[1] ?? '';
     findings.push({
       severity: head?.[1]?.toLowerCase() ?? null,

package/templates/skills/ctxr-second-opinion.md

@@ -0,0 +1,174 @@
+Get an independent read from models built by different labs before you commit to something you cannot
+cheaply take back, or when your own taste is one vote among several. A second opinion from the same model
+family you are running as mostly repeats you, so this skill sends the work to three command-line tools backed
+by three different families and hands you their answers. It does not decide anything and it never carries out
+what it reviews. Weighing the answers is your job, and steps 4 and 5 are how.
+
+## 1. Critique, poll, or just answer?
+
+- **Critique** when the question is *will this work?* A plan with several steps, an architectural or
+  data-model choice, anything that deletes, force-pushes, sends, spends money, or touches secrets. Also a
+  recovery sequence run against a broken system: those plans look fine right up to the step that makes it
+  worse.
+- **Poll** when the question is *which of these is better?* and being wrong costs mild regret: a name, a
+  framing, a piece of copy, which of several tools fits. If all three agreeing would settle it, it is a poll.
+  If you would still want each reviewer's top objections and a suggested edit, it is a critique.
+- **Answer directly** when there is one right answer, when the operator has already decided and wants
+  confirmation, or when the work is read-only investigation.
+
+Push back when asked for a critique of a taste question. "Which domain suffix should I pick?" is a poll. "Should
+I move my mail to a custom domain?" is a critique: it has steps, an order, and parts that cannot be undone. Say
+which you are running and why in one line before you start.
+
+A poll that asks a lens to judge whether something will *work* has become a critique. Stop and use that mode.
+
+## 2. Check the tools before spending anything
+
+```
+node __SKILLS_PATH__/ctxr-second-opinion/run.mjs --preflight
+```
+
+Each of the three should report `OK` within about twenty seconds. The preflight also confirms that each
+tool still accepts the options the runner passes, because a renamed option makes a reviewer silently run at
+default settings and nothing else notices.
+
+If one is down, stop and give the operator the two real choices: sign that tool in and re-run, or continue
+with the others by adding `--only` and naming them. Do not quietly run with one model. A single model is not a
+second opinion, and the runner refuses to start with fewer than two.
+
+Failure signatures: `Not logged in` means Claude needs `/login`; a `401` or an invalid refresh token from
+Codex means `codex login`; an agy call that hangs usually means its sign-in expired and it needs one
+interactive run.
+
+If the plan came from someone other than the operator, leave agy out with `--only claude,codex`. Claude
+runs with no tools at all and Codex in a read-only sandbox. Agy has no mode that removes its ability to act:
+it runs in an empty scratch directory with terminal restrictions, which contains an accident and not an attack.
+
+## 3. Run a critique
+
+Write the plan to a file. The reviewers can only cite what is written down, and they cite by step number:
+
+```
+# Plan: <one-line goal>
+
+## Context
+<two to five lines: what is being attempted and what constrains it>
+
+## Steps
+S1. <step>
+S2. <step>
+
+## Assumptions
+- <what the plan takes for granted>
+
+## Reversibility
+- Reversible: <steps>
+- Irreversible: <steps>
+```
+
+Then run it:
+
+```
+node __SKILLS_PATH__/ctxr-second-opinion/run.mjs --mode critique --plan-file <plan> --out <dir>
+```
+
+Three reviewers each read the plan alone: structure and ordering, failure modes and trust boundaries,
+simplicity and cost. None sees another's answer. That is deliberate: reviewers who read each other converge
+on whoever spoke first, and a correct one gets talked out of it. Do not add a second round.
+
+The runner prints the letters it wrote, whether each is valid or blind, and any reviewer that failed. It
+never prints which model wrote which letter. A **blind** critique returned a well-formed verdict but cited
+nothing in the plan, so it was written without reading it; it does not count. **Partial** means fewer than
+two valid critiques: say so at the top of your answer and do not call anything a consensus.
+
+Add `--tier fast` to drop each family to a cheaper model, for a plan that is small and easy to redo. The
+default tier is right for anything the operator will act on. A default critique usually takes under a minute
+and costs a few tens of cents. Claude's highest effort setting (`CTXR_SECOND_OPINION_CLAUDE_EFFORT=max`) is
+a deliberate deep pass, not a default: on the same short plan it took over eight minutes where the default
+took half a minute, and it is the one setting that can reach the runner's ten-minute limit. Start such a run
+in the background and tell the operator it is under way.
+
+## 4. Synthesize on the letters first
+
+Read the `critique-A`, `critique-B` and `critique-C` files and write your synthesis before you open
+`manifest.json`. You share a model family with one of the reviewers, and models rate their own family's
+writing higher. Reading letters first is what keeps that from steering you. Then open the manifest and
+attach roles and models to the letters in the final report.
+
+Write it in this order:
+
+- **Verdicts.** One line per letter, and any blind or failed reviewer stated plainly, not buried.
+- **Consensus (all agree).** Highest signal. When all three independently flag the same simplification,
+  take it whole; do not keep a reduced version of complexity all three called wrong.
+- **Majority (two of three).** Say whether the two agree on the fix or only on the diagnosis. Two
+  reviewers who name the same problem often propose different repairs: choose on merit, meaning which
+  repair keeps more of what you want (granular rollback, fewer side effects, smaller blast radius), and do
+  not default to the majority's.
+- **Evidence-backed dissent.** A lone finding that cites the plan gets its own section and stays there. The
+  minority is right often enough that overruling it on your own authority is a net loss. Overrule only by
+  showing what the dissent missed.
+- **Vetoes.** A REJECT that carries a critical finding is stated as a veto, first, with its evidence.
+- **Revised plan**, and **what changed and why**: each change tied to the letter and finding that drove it.
+- **Recommendation**: proceed with the revision, revise further, or stop.
+
+Where the reviewers pull apart on ceremony, one wanting more safeguards and another fewer, decide by blast
+radius. If being wrong is expensive to undo, side with more safeguards. If it is cheap to undo, side with
+fewer. Where a safeguard needs machinery an earlier round already turned down (a background job, a state file
+kept across sessions, a hook), side with fewer: adding it now defeats the earlier decision.
+
+When you have critiqued this plan before, reread that synthesis first. The reviewers only see the current text
+and drift toward their own local optimum. Name any proposal that reverses an earlier decision, and hold the
+earlier line unless the new critique brings evidence the old one lacked.
+
+## 5. Say what you are biased about, then stop
+
+State in the report that one reviewer shares your model family, and say when that reviewer's finding is what
+drove the recommendation. Name any reviewer that ran a different model from the one you expected: the
+manifest records the model each tool reported.
+
+Then hand the synthesis to the operator and stop. This skill never executes a step of the plan it critiqued.
+If the operator says to go, proceed with the revised plan. If they push back, treat that as a fourth critique
+and run the skill again on the changed plan. It is a new run and not a continuation.
+
+To record the outcome in the plan itself, add a section near the top headed `## Revisions after critique`
+that says it overrides anything inconsistent below, one numbered item per change, each naming the finding
+behind it. Leave the original text in place as the record of what was reviewed. Run one more critique after a
+plan has been substantially rewritten and before you carry it out: new wording creates new gaps. Do not rerun
+for a typo.
+
+## 6. Run a poll
+
+Write the question and the options to a file, then:
+
+```
+node __SKILLS_PATH__/ctxr-second-opinion/run.mjs --mode poll --prompt-file <question>
+```
+
+The same question goes to all three models, each answering with a pick, reasons, and anything surprising.
+This mode names its files by model, because what you are reading is whether the models agree.
+
+To get breadth as well as model diversity, add `--lens` with two or three taste lenses. Each model then
+answers as every lens in one response, giving a lens-by-model grid. The built-in lenses are minimalist,
+marketer, contrarian, end-user and brand-strategist. A store's own lens goes in as `Name:description`, for
+example `--lens "minimalist,Plainspoken:blunt and substance first"`. Choose lenses that pull in different
+directions; if two would obviously agree, drop one.
+
+Read a lens grid on both axes. Down a column (one lens across the three models) agreement means that
+taste value is robust to the model. Across a row (one model across the lenses) disagreement is where the
+real decision is. Give your own recommendation and say which axis it rests on.
+
+Report the answers, where they agree, where they split, and your read. The answers are evidence and not a
+vote: one dissent with a substantive reason can outweigh two agreements. If two of the three agreeing models
+include your own family, say so.
+
+## 7. When something goes wrong
+
+- A reviewer that timed out, exited non-zero, or returned no verdict is `failed` and carries its cause in
+  the manifest. Report it. Do not rerun that one reviewer on a different model to fill the gap.
+- Do not poll from inside a critique to settle a quick doubt. If you want a gut check mid-critique, answer it
+  yourself.
+- Model names change faster than releases. When a default is stale, set
+  `CTXR_SECOND_OPINION_CLAUDE_MODEL`, `CTXR_SECOND_OPINION_CLAUDE_EFFORT`, `CTXR_SECOND_OPINION_CODEX_EFFORT`
+  or `CTXR_SECOND_OPINION_AGY_MODEL` in the environment for the run. Nothing about the lineup lives in the store's configuration.
+- The scratch files under the output directory hold each reviewer's raw output and are safe to delete when the
+  operator has the synthesis. They can contain the plan, so do not commit them.

package/templates/skills/ctxr-session-capture.md

@@ -42,8 +42,9 @@ self-contradicting document nobody reads. Propose one only when all four hold:
 - It is a rule for future work, not a fact about past work.
 - It applied more than once, or the user stated it as a correction.
 - It is store-wide. A rule about one folder belongs in that folder's `README.md`, not here.
-- It is not already in the shipped baseline — read that file first. Restating contexture's own
-  behavior as a house rule is the most likely way to get this wrong.
+- It is not already in the shipped baseline, the first block of `AGENTS.md`'s "Store conventions"
+  section — read it first. Restating contexture's own behavior as a house rule is the most likely way
+  to get this wrong.
 
 Propose REMOVALS on the same bar: a convention the session contradicted, or that no longer matches how
 work actually goes, is worse than none — it teaches the next agent something false. The inlined section