ctxr-cli 0.18.0 → 0.20.0

package/dist/config/load.js

@@ -1,8 +1,9 @@
 import { readFile } from 'node:fs/promises';
 import path from 'node:path';
-import { parse as parseYaml } from 'yaml';
+import { parseDocument } from 'yaml';
 import { CONFIG_FILE_NAME } from '../core/root.js';
-import { InvalidConfigError, SchemaVersionBehindError, SchemaVersionMissingError, SchemaVersionNewerError, } from '../core/errors.js';
+import { InvalidConfigError, SchemaMigrationFailedError, SchemaVersionBehindError, SchemaVersionMissingError, SchemaVersionNewerError, } from '../core/errors.js';
+import { MIGRATION_STEPS, migrationFloor, MigrationStepFailedError, runMigrations } from './migrations.js';
 import { StoreConfigSchema, SUPPORTED_SCHEMA_VERSION } from './schema.js';
 export function configPathFor(root) {
     return path.join(root, CONFIG_FILE_NAME);
@@ -13,19 +14,37 @@ export function configPathFor(root) {
  * BEFORE full validation, so a store whose recorded version differs in either
  * direction reports the version rather than the confusing generic
  * shape-validation error the full schema would otherwise produce.
+ *
+ * `steps` is the migration ladder the gate measures its floor against. It is
+ * only ever overridden by tests; every command passes the shipped one.
  */
-export async function readConfig(root) {
+export async function readConfig(root, steps = MIGRATION_STEPS) {
+    return (await loadConfig(root, { migrate: false, steps })).config;
+}
+/**
+ * migrate-stores-on-update (design D2): the one exception to the gate, for
+ * `ctxr update` alone. A store recorded at an older version that is at or
+ * above the migration floor is carried forward IN MEMORY and validated; the
+ * caller decides whether and where the migrated document is written. Every
+ * other refusal — newer, missing, below the floor — is identical to
+ * `readConfig`'s, because it is the same function.
+ */
+export async function readConfigMigrating(root, steps = MIGRATION_STEPS) {
+    return loadConfig(root, { migrate: true, steps });
+}
+async function loadConfig(root, mode) {
     const configPath = configPathFor(root);
     const text = await readFile(configPath, 'utf8');
-    let raw;
-    try {
-        raw = parseYaml(text);
-    }
-    catch (err) {
+    // A Document, not a plain value: a migration has to write back everything it
+    // did not change — comments and key order included — and only the parsed
+    // document carries those.
+    const document = parseDocument(text);
+    if (document.errors.length > 0) {
         throw new InvalidConfigError(configPath, [
-            { path: '(root)', message: err instanceof Error ? err.message : String(err) },
+            { path: '(root)', message: document.errors.map((err) => err.message).join('; ') },
         ]);
     }
+    const raw = document.toJS();
     const rawVersion = raw?.schema_version;
     if (rawVersion === undefined || rawVersion === null) {
         throw new SchemaVersionMissingError(configPath);
@@ -36,24 +55,42 @@ export async function readConfig(root) {
     if (rawVersion > SUPPORTED_SCHEMA_VERSION) {
         throw new SchemaVersionNewerError(rawVersion, SUPPORTED_SCHEMA_VERSION);
     }
+    let toValidate = document;
+    let migratedFrom = null;
     /**
-     * retire-store-migrations: the older direction is refused here too, and for
-     * the same reason the newer one is — this release cannot read that shape.
-     * It has to happen before `safeParse`, or an older config fails on the keys
-     * whose superseded spellings the schema no longer accepts, reporting a shape
-     * error against keys the operator never wrote instead of the version.
+     * The older direction is refused here, before `safeParse`, for every command
+     * but update — or an older config fails on the keys whose superseded
+     * spellings the schema no longer accepts, reporting a shape error against
+     * keys the operator never wrote instead of the version. Update migrates the
+     * raw document first instead, so the typed schema still only ever sees the
+     * current spellings.
      */
     if (rawVersion < SUPPORTED_SCHEMA_VERSION) {
-        throw new SchemaVersionBehindError(rawVersion, SUPPORTED_SCHEMA_VERSION);
+        const floor = migrationFloor(mode.steps);
+        if (!mode.migrate || rawVersion < floor) {
+            throw new SchemaVersionBehindError(rawVersion, SUPPORTED_SCHEMA_VERSION, floor);
+        }
+        try {
+            toValidate = runMigrations(document, rawVersion, mode.steps);
+        }
+        catch (err) {
+            if (err instanceof MigrationStepFailedError)
+                throw new SchemaMigrationFailedError(configPath, err.message);
+            throw err;
+        }
+        migratedFrom = rawVersion;
     }
-    const result = StoreConfigSchema.safeParse(raw);
+    const result = StoreConfigSchema.safeParse(toValidate.toJS());
     if (!result.success) {
         const issues = result.error.issues.map((issue) => ({
             path: issue.path.join('.') || '(root)',
             message: issue.message,
         }));
+        if (migratedFrom !== null) {
+            throw new SchemaMigrationFailedError(configPath, `the migrated configuration does not validate: ${issues.map((i) => `${i.path}: ${i.message}`).join('; ')}`);
+        }
         throw new InvalidConfigError(configPath, issues);
     }
-    return result.data;
+    return { config: result.data, document: toValidate, migratedFrom };
 }
 //# sourceMappingURL=load.js.map

package/dist/config/load.js.map

@@ -1 +1 @@
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package/dist/config/migrations.d.ts

@@ -0,0 +1,61 @@
+import type { Document } from 'yaml';
+/**
+ * migrate-stores-on-update: one step carries a store's configuration from
+ * schema version `from` to `from + 1`.
+ *
+ * A step works on the PARSED DOCUMENT, never on the typed configuration and
+ * never on the plain value `parse` returns (design D1). That is what lets the
+ * typed schema keep exactly one spelling per key — the objection that retired
+ * the previous migration mechanism was the leniency it forced onto
+ * `StoreConfigSchema`, so a stale config could be read by the migration about
+ * to rewrite it. Here the stale spelling is renamed in the document before
+ * the typed schema ever sees it.
+ *
+ * It is also what keeps a migration reviewable: a `yaml` Document serializes
+ * back with its comments, key order and quoting intact, so the written file
+ * differs from the original only where the step says. Rename a key by
+ * assigning the pair's key value in place — `setIn` + `deleteIn` would append
+ * the new key at the end of its map instead.
+ */
+export interface MigrationStep {
+    /** The schema version this step reads; it writes `from + 1`. */
+    readonly from: number;
+    /**
+     * Dotted key paths this step renames or removes. The typed schema must not
+     * declare any of them, which test/unit/config-migrations.test.ts asserts —
+     * a retired spelling that is still live is exactly the second contract this
+     * design exists to avoid.
+     */
+    readonly retires: readonly string[];
+    /** Mutates the document in place. Throwing aborts the whole run, and nothing is written. */
+    apply(doc: Document): void;
+}
+/**
+ * The shipped ladder, in version order. Empty at the change that introduced
+ * it: both known stores were already at the supported version, so there was
+ * nothing to carry. The first release that raises SUPPORTED_SCHEMA_VERSION
+ * adds its step here, in the same change — the contiguity test fails until
+ * it does.
+ */
+export declare const MIGRATION_STEPS: readonly MigrationStep[];
+/**
+ * The oldest schema version this release can bring forward. With no steps it
+ * is the supported version itself, so every older store is below it and the
+ * behind-version refusal never names an update that could not help.
+ */
+export declare function migrationFloor(steps?: readonly MigrationStep[]): number;
+export declare class MigrationStepFailedError extends Error {
+    readonly from: number;
+    readonly cause: unknown;
+    constructor(from: number, cause: unknown);
+}
+/**
+ * Applies every step from `fromVersion` up to the supported version, in order,
+ * to a CLONE of `doc`, records the supported version on it, and returns it.
+ * The input document is never touched, so a failure partway up the ladder
+ * leaves the caller holding exactly what it read. A missing or throwing step
+ * aborts with MigrationStepFailedError — a half-migrated document is never
+ * returned as if it were whole.
+ */
+export declare function runMigrations(doc: Document, fromVersion: number, steps?: readonly MigrationStep[]): Document;
+//# sourceMappingURL=migrations.d.ts.map

package/dist/config/migrations.d.ts.map

@@ -0,0 +1 @@
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package/dist/config/migrations.js

@@ -0,0 +1,55 @@
+import { SUPPORTED_SCHEMA_VERSION } from './schema.js';
+/**
+ * The shipped ladder, in version order. Empty at the change that introduced
+ * it: both known stores were already at the supported version, so there was
+ * nothing to carry. The first release that raises SUPPORTED_SCHEMA_VERSION
+ * adds its step here, in the same change — the contiguity test fails until
+ * it does.
+ */
+export const MIGRATION_STEPS = [];
+/**
+ * The oldest schema version this release can bring forward. With no steps it
+ * is the supported version itself, so every older store is below it and the
+ * behind-version refusal never names an update that could not help.
+ */
+export function migrationFloor(steps = MIGRATION_STEPS) {
+    if (steps.length === 0)
+        return SUPPORTED_SCHEMA_VERSION;
+    return Math.min(...steps.map((step) => step.from));
+}
+export class MigrationStepFailedError extends Error {
+    from;
+    cause;
+    constructor(from, cause) {
+        super(`schema migration step ${from} -> ${from + 1} failed: ${cause instanceof Error ? cause.message : String(cause)}`);
+        this.from = from;
+        this.cause = cause;
+        this.name = 'MigrationStepFailedError';
+    }
+}
+/**
+ * Applies every step from `fromVersion` up to the supported version, in order,
+ * to a CLONE of `doc`, records the supported version on it, and returns it.
+ * The input document is never touched, so a failure partway up the ladder
+ * leaves the caller holding exactly what it read. A missing or throwing step
+ * aborts with MigrationStepFailedError — a half-migrated document is never
+ * returned as if it were whole.
+ */
+export function runMigrations(doc, fromVersion, steps = MIGRATION_STEPS) {
+    const migrated = doc.clone();
+    for (let version = fromVersion; version < SUPPORTED_SCHEMA_VERSION; version += 1) {
+        const step = steps.find((candidate) => candidate.from === version);
+        if (!step) {
+            throw new MigrationStepFailedError(version, new Error('no step carries this version forward'));
+        }
+        try {
+            step.apply(migrated);
+        }
+        catch (err) {
+            throw new MigrationStepFailedError(version, err);
+        }
+    }
+    migrated.set('schema_version', SUPPORTED_SCHEMA_VERSION);
+    return migrated;
+}
+//# sourceMappingURL=migrations.js.map

package/dist/config/migrations.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"migrations.js","sourceRoot":"","sources":["../../src/config/migrations.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,wBAAwB,EAAE,MAAM,aAAa,CAAC;AAkCvD;;;;;;GAMG;AACH,MAAM,CAAC,MAAM,eAAe,GAA6B,EAAE,CAAC;AAE5D;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,KAAK,GAA6B,eAAe;IAC9E,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,wBAAwB,CAAC;IACxD,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,OAAO,wBAAyB,SAAQ,KAAK;IAEtC,IAAI;IACJ,KAAK;IAFhB,YACW,IAAY,EACZ,KAAc;QAEvB,KAAK,CACH,yBAAyB,IAAI,OAAO,IAAI,GAAG,CAAC,YAAY,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CACjH,CAAC;oBALO,IAAI;qBACJ,KAAK;QAKd,IAAI,CAAC,IAAI,GAAG,0BAA0B,CAAC;IACzC,CAAC;CACF;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,aAAa,CAC3B,GAAa,EACb,WAAmB,EACnB,KAAK,GAA6B,eAAe;IAEjD,MAAM,QAAQ,GAAG,GAAG,CAAC,KAAK,EAAE,CAAC;IAC7B,KAAK,IAAI,OAAO,GAAG,WAAW,EAAE,OAAO,GAAG,wBAAwB,EAAE,OAAO,IAAI,CAAC,EAAE,CAAC;QACjF,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC;QACnE,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,MAAM,IAAI,wBAAwB,CAAC,OAAO,EAAE,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAC,CAAC;QACjG,CAAC;QACD,IAAI,CAAC;YACH,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QACvB,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,MAAM,IAAI,wBAAwB,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC;QACnD,CAAC;IACH,CAAC;IACD,QAAQ,CAAC,GAAG,CAAC,gBAAgB,EAAE,wBAAwB,CAAC,CAAC;IACzD,OAAO,QAAQ,CAAC;AAClB,CAAC"}

package/dist/config/schema.d.ts

@@ -4,15 +4,18 @@ import { z } from 'zod';
  * note frontmatter conventions) — a monotonic integer independent of the npm
  * package version — not "what this CLI release happens to be."
  *
- * retire-store-migrations: contexture ships no migration mechanism, so this
- * number is a gate rather than a starting point. `readConfig` refuses any
- * store whose recorded version is not exactly this one, in either direction:
- * a newer store because this release cannot know its shape, an older one
- * because this release no longer reads that shape and offers nothing that
- * would bring it forward. A release that changes the store's shape bumps this
- * and documents the one-time fixup in its release notes.
+ * It is a gate. `readConfig` refuses any store whose recorded version is not
+ * exactly this one, in either direction — with one exception since
+ * migrate-stores-on-update: `ctxr update` carries an OLDER store forward
+ * through the migration ladder in ./migrations.ts, provided it is at or above
+ * the ladder's floor. A newer store is refused everywhere.
  *
- * It stayed at 10 through that retirement on purpose: nothing about a
+ * RAISING THIS NUMBER: add the step from the previous version to
+ * MIGRATION_STEPS in the same change, with a byte-exact fixture test of its
+ * own. test/unit/config-migrations.test.ts fails until the step exists; the
+ * fixture is the convention that keeps a step's output reviewable.
+ *
+ * It stayed at 10 through retire-store-migrations on purpose: nothing about a
  * conforming store's shape changed. What was dropped were superseded INPUT
  * spellings that no store at 10 has ever written, since `renderStoreConfig`
  * only ever emitted the current names.

package/dist/config/schema.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAIxB;;;;;;;;;;;;;;;;;GAiBG;AACH,eAAO,MAAM,wBAAwB,KAAK,CAAC;AAE3C,eAAO,MAAM,mBAAmB;;;;iBAI9B,CAAC;AAYH;;;;;;GAMG;AACH,QAAA,MAAM,mBAAmB;;;;;iBAKvB,CAAC;AAwRH,QAAA,MAAM,wBAAwB;;;;;;;iBAM5B,CAAC;AAiBH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAgD1B,CAAC;AAEL,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC"}
+{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAIxB;;;;;;;;;;;;;;;;;;;;GAoBG;AACH,eAAO,MAAM,wBAAwB,KAAK,CAAC;AAE3C,eAAO,MAAM,mBAAmB;;;;iBAI9B,CAAC;AAYH;;;;;;GAMG;AACH,QAAA,MAAM,mBAAmB;;;;;iBAKvB,CAAC;AAwRH,QAAA,MAAM,wBAAwB;;;;;;;iBAM5B,CAAC;AAiBH,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAgD1B,CAAC;AAEL,MAAM,MAAM,WAAW,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAC5D,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,CAAC;AACtE,MAAM,MAAM,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC"}

package/dist/config/schema.js

@@ -6,15 +6,18 @@ import { SHIPPED_DEFAULTS } from './defaults.js';
  * note frontmatter conventions) — a monotonic integer independent of the npm
  * package version — not "what this CLI release happens to be."
  *
- * retire-store-migrations: contexture ships no migration mechanism, so this
- * number is a gate rather than a starting point. `readConfig` refuses any
- * store whose recorded version is not exactly this one, in either direction:
- * a newer store because this release cannot know its shape, an older one
- * because this release no longer reads that shape and offers nothing that
- * would bring it forward. A release that changes the store's shape bumps this
- * and documents the one-time fixup in its release notes.
+ * It is a gate. `readConfig` refuses any store whose recorded version is not
+ * exactly this one, in either direction — with one exception since
+ * migrate-stores-on-update: `ctxr update` carries an OLDER store forward
+ * through the migration ladder in ./migrations.ts, provided it is at or above
+ * the ladder's floor. A newer store is refused everywhere.
  *
- * It stayed at 10 through that retirement on purpose: nothing about a
+ * RAISING THIS NUMBER: add the step from the previous version to
+ * MIGRATION_STEPS in the same change, with a byte-exact fixture test of its
+ * own. test/unit/config-migrations.test.ts fails until the step exists; the
+ * fixture is the convention that keeps a step's output reviewable.
+ *
+ * It stayed at 10 through retire-store-migrations on purpose: nothing about a
  * conforming store's shape changed. What was dropped were superseded INPUT
  * spellings that no store at 10 has ever written, since `renderStoreConfig`
  * only ever emitted the current names.
@@ -260,9 +263,9 @@ const OrganizeSchema = z
 });
 /**
  * harness-portability spec: the portable skill pack and the guidance
- * documents (a shipped baseline convention file, the operator's own
- * convention files, and the mission document) AGENTS.md's generated
- * sections read from and inline.
+ * documents (the operator's own convention files and the mission document)
+ * AGENTS.md's generated sections read from and inline. The shipped baseline
+ * is rendered into AGENTS.md directly, never read from this directory.
  *
  * `skills_path` and `guidance_path` are the only spellings. Their pre-rename
  * names `procedures_path` and `conventions_path` were accepted here as inputs

package/dist/config/schema.js.map

@@ -1 +1 @@
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package/dist/core/checks/write-lifecycle-checks.d.ts

@@ -15,6 +15,14 @@ export declare const stagedSecretScanCheck: import("./types.js").CheckDefinition
  * write time, so the two can never disagree.
  */
 export declare const stagedPathAllowlistCheck: import("./types.js").CheckDefinition;
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: the ceiling bounds what an
+ * agent can stage unreviewed, and contexture's own writes are not that — a fresh
+ * `init` stages every owned and vendored skill in one commit. A staged file is
+ * left out of the count when its staged content is byte-identical to what the
+ * installed version ships for its path. Identity, not location: a file that
+ * differs by one byte, one that is not shipped, and every deletion count in full.
+ */
 export declare const stagedDiffSizeCeilingCheck: import("./types.js").CheckDefinition;
 /**
  * store-scope (not staged): are both hooks present with current content,

package/dist/core/checks/write-lifecycle-checks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"write-lifecycle-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/write-lifecycle-checks.ts"],"names":[],"mappings":"AAYA;;;;GAIG;AACH,eAAO,MAAM,4BAA4B,sCAyCvC,CAAC;AAEH,eAAO,MAAM,yBAAyB,sCAsBpC,CAAC;AAEH,eAAO,MAAM,qBAAqB,sCAqBhC,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,wBAAwB,sCAqCnC,CAAC;AAEH,eAAO,MAAM,0BAA0B,sCA2BrC,CAAC;AAEH;;;;;GAKG;AACH,eAAO,MAAM,gBAAgB,sCAiC3B,CAAC;AAEH,eAAO,MAAM,sBAAsB,wCAOlC,CAAC"}
+{"version":3,"file":"write-lifecycle-checks.d.ts","sourceRoot":"","sources":["../../../src/core/checks/write-lifecycle-checks.ts"],"names":[],"mappings":"AAaA;;;;GAIG;AACH,eAAO,MAAM,4BAA4B,sCAyCvC,CAAC;AAEH,eAAO,MAAM,yBAAyB,sCAsBpC,CAAC;AAEH,eAAO,MAAM,qBAAqB,sCAqBhC,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,wBAAwB,sCAqCnC,CAAC;AAEH;;;;;;;GAOG;AACH,eAAO,MAAM,0BAA0B,sCAgCrC,CAAC;AAEH;;;;;GAKG;AACH,eAAO,MAAM,gBAAgB,sCAiC3B,CAAC;AAEH,eAAO,MAAM,sBAAsB,wCAOlC,CAAC"}

package/dist/core/checks/write-lifecycle-checks.js

@@ -5,6 +5,7 @@ import { parseNoteText } from '../notes/parse.js';
 import { scanForSecrets } from '../security/secrets.js';
 import { validateFenceIntegrity } from '../fs/fenced-region.js';
 import { sanctionedPath } from '../write-lifecycle/path-gate.js';
+import { shippedSkillFiles } from '../skills.js';
 import { defineCheck } from './types.js';
 const CONFIG_FILE_NAME = 'contexture.yaml';
 /**
@@ -148,6 +149,14 @@ export const stagedPathAllowlistCheck = defineCheck({
         return { status: findings.length > 0 ? 'fail' : 'pass', findings };
     },
 });
+/**
+ * exempt-shipped-skill-files-from-the-diff-ceiling: the ceiling bounds what an
+ * agent can stage unreviewed, and contexture's own writes are not that — a fresh
+ * `init` stages every owned and vendored skill in one commit. A staged file is
+ * left out of the count when its staged content is byte-identical to what the
+ * installed version ships for its path. Identity, not location: a file that
+ * differs by one byte, one that is not shipped, and every deletion count in full.
+ */
 export const stagedDiffSizeCeilingCheck = defineCheck({
     id: 'staged.diff_size_ceiling',
     title: 'Total staged diff size is under the configured ceiling',
@@ -155,17 +164,27 @@ export const stagedDiffSizeCeilingCheck = defineCheck({
     capability: 'write-lifecycle',
     scopes: ['staged'],
     async run(ctx) {
-        const total = (ctx.staged ?? []).reduce((sum, file) => sum + (file.addedLines ?? 0) + (file.removedLines ?? 0), 0);
+        const shipped = await shippedSkillFiles(ctx.config);
+        let total = 0;
+        let leftOut = 0;
+        for (const file of ctx.staged ?? []) {
+            const lines = (file.addedLines ?? 0) + (file.removedLines ?? 0);
+            if (file.status !== 'D' && file.content !== undefined && shipped.get(file.path) === file.content)
+                leftOut += lines;
+            else
+                total += lines;
+        }
         const ceiling = ctx.config.write_lifecycle.diff_size_ceiling_lines;
         if (total > ceiling) {
+            const note = leftOut > 0 ? ` (${leftOut} more changed lines are skill files identical to what this version ships, and are not counted)` : '';
             return {
                 status: 'fail',
                 findings: [
                     {
                         code: 'staged.diff_size_ceiling.exceeded',
                         severity: 'error',
-                        message: `Staged changes total ${total} changed lines, exceeding the configured ceiling of ${ceiling}.`,
-                        details: { total, ceiling },
+                        message: `Staged changes total ${total} changed lines, exceeding the configured ceiling of ${ceiling}${note}.`,
+                        details: { total, ceiling, left_out: leftOut },
                     },
                 ],
             };

package/dist/core/checks/write-lifecycle-checks.js.map

@@ -1 +1 @@
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package/dist/core/conventions.d.ts

@@ -32,10 +32,9 @@ export declare function extractDocMetadata(raw: string, relativePath: string): S
 export declare function inlineDocBody(doc: ScannedDoc, headingOffset: number): string[];
 export declare function scanDocsDir(root: string, dirRelativePath: string): Promise<ScannedDoc[]>;
 /**
- * Every convention doc currently at the configured guidance path —
- * contexture's own shipped baseline (see `templates/conventions/baseline-conventions.md`,
- * synced by `syncBaselineConventions` in `convention-doc.ts`) alongside
- * whatever the operator has added — minus the mission document.
+ * Every convention doc the operator has put at the configured guidance path,
+ * minus the mission document. The shipped baseline is not among them: it is
+ * rendered into AGENTS.md by `renderBaselineConventions` in `convention-doc.ts`.
  */
 export declare function scanConventions(root: string, config: StoreConfig): Promise<ScannedDoc[]>;
 //# sourceMappingURL=conventions.d.ts.map

package/dist/core/conventions.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"conventions.d.ts","sourceRoot":"","sources":["../../src/core/conventions.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAIvD;;;;;;;;GAQG;AACH,MAAM,WAAW,UAAU;IACzB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,gDAAgD;IAChD,IAAI,EAAE,MAAM,CAAC;CACd;AAID,oGAAoG;AACpG,eAAO,MAAM,eAAe,aAAa,CAAC;AAE1C,wBAAgB,kBAAkB,CAAC,GAAG,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,UAAU,CA4BhF;AAID;;;;;;;;;GASG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,GAAG,MAAM,EAAE,CAyB9E;AAED,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAgC9F;AAgBD;;;;GAIG;AACH,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC,CAI9F"}

package/dist/core/conventions.js

@@ -122,10 +122,9 @@ function reservedGuidanceFileNames(config) {
     return names;
 }
 /**
- * Every convention doc currently at the configured guidance path —
- * contexture's own shipped baseline (see `templates/conventions/baseline-conventions.md`,
- * synced by `syncBaselineConventions` in `convention-doc.ts`) alongside
- * whatever the operator has added — minus the mission document.
+ * Every convention doc the operator has put at the configured guidance path,
+ * minus the mission document. The shipped baseline is not among them: it is
+ * rendered into AGENTS.md by `renderBaselineConventions` in `convention-doc.ts`.
  */
 export async function scanConventions(root, config) {
     const docs = await scanDocsDir(root, config.harness.guidance_path);

package/dist/core/conventions.js.map

@@ -1 +1 @@
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package/dist/core/env.d.ts

@@ -1,3 +1,4 @@
+import type { MigrationStep } from '../config/migrations.js';
 import type { Prompter } from '../prompt/prompter.js';
 import type { GitRunner } from './git/exec.js';
 import type { RegistryClient } from './registry.js';
@@ -32,6 +33,12 @@ export interface RunEnv {
     /** The release registry. The only network-capable port; see core/registry.ts. */
     registry: RegistryClient;
     now(): Date;
+    /**
+     * The schema migration ladder. Absent in production — `realEnv()` never sets
+     * it, so every command measures against the shipped ladder. Tests set it to
+     * exercise a migration before any real step exists (migrate-stores-on-update).
+     */
+    migrationSteps?: readonly MigrationStep[];
 }
 /**
  * interactive ⇔ stdin.isTTY && stdout.isTTY && !noInput.

package/dist/core/env.d.ts.map

@@ -1 +1 @@
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package/dist/core/env.js.map

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package/dist/core/errors.d.ts

@@ -34,8 +34,23 @@ export declare class NotAGitRepositoryError extends ContextureError {
 export declare class SchemaVersionNewerError extends ContextureError {
     constructor(storeVersion: number, supportedVersion: number);
 }
+/**
+ * migrate-stores-on-update: one error for every older store, so the code a
+ * caller matches on stays `config.schema_version.behind` whichever way the
+ * remedy points. What varies is the remedy, carried in the message and in
+ * `details.remedy`:
+ *
+ *   - `update`  the store is at or above the migration floor, so `ctxr update`
+ *               carries it forward. Raised by every command except update.
+ *   - `by_hand` the store is below the floor; nothing in this release can
+ *               bring it forward. Raised by every command, update included.
+ */
 export declare class SchemaVersionBehindError extends ContextureError {
-    constructor(storeVersion: number, supportedVersion: number);
+    constructor(storeVersion: number, supportedVersion: number, floor: number);
+}
+/** A schema migration step failed, or its result did not validate; nothing was written. */
+export declare class SchemaMigrationFailedError extends ContextureError {
+    constructor(configPath: string, detail: string);
 }
 export declare class SchemaVersionMissingError extends ContextureError {
     constructor(configPath: string);