ctxr-cli 0.1.0 → 0.2.0

package/dist/core/procedures.js.map

@@ -1 +1 @@
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package/dist/core/rollup.d.ts

@@ -0,0 +1,29 @@
+import type { GitRunner } from './git/exec.js';
+import type { Note } from './notes/list.js';
+/** The single fenced region `rollup write` writes into, and the frontmatter timestamp it stamps alongside it. */
+export declare const ROLLUP_FENCE: import("./markers.js").Fence;
+export declare const ROLLED_UP_FIELD = "rolled_up";
+export declare function hasRollupSection(note: Note): boolean;
+export interface StaleRollupEntry {
+    entity: string;
+    rolledUp: string | null;
+    newestBacklink: {
+        path: string;
+        modified: string;
+    } | null;
+}
+/**
+ * context-organize spec (D4): staleness is computed, never stored — no
+ * cache, no ledger. An entity with no recorded timestamp (but at least one
+ * backlink) is always stale; otherwise it is stale once the gap between the
+ * newest backlink's last commit and the recorded timestamp exceeds
+ * `staleDays`, bounding noise from a backlink edited moments ago. A
+ * backlink with no commit history at all (freshly created, uncommitted)
+ * counts as newer than any timestamp, since it clearly postdates it.
+ */
+export declare function checkRollupStaleness(git: GitRunner, root: string, entity: Note, allNotes: readonly Note[], staleDays: number): Promise<StaleRollupEntry | null>;
+/** Every entity with a rollup section (optionally narrowed to one), reported stale per `checkRollupStaleness`. */
+export declare function findStaleRollups(git: GitRunner, root: string, notes: readonly Note[], options?: {
+    entity?: string;
+}, staleDays?: number): Promise<StaleRollupEntry[]>;
+//# sourceMappingURL=rollup.d.ts.map

package/dist/core/rollup.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"rollup.d.ts","sourceRoot":"","sources":["../../src/core/rollup.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,eAAe,CAAC;AAG/C,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,iBAAiB,CAAC;AAE5C,iHAAiH;AACjH,eAAO,MAAM,YAAY,8BAA6B,CAAC;AACvD,eAAO,MAAM,eAAe,cAAc,CAAC;AAE3C,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,IAAI,GAAG,OAAO,CAEpD;AAaD,MAAM,WAAW,gBAAgB;IAC/B,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,cAAc,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE,GAAG,IAAI,CAAC;CAC3D;AAED;;;;;;;;GAQG;AACH,wBAAsB,oBAAoB,CACxC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,IAAI,EACZ,QAAQ,EAAE,SAAS,IAAI,EAAE,EACzB,SAAS,EAAE,MAAM,GAChB,OAAO,CAAC,gBAAgB,GAAG,IAAI,CAAC,CAsBlC;AAED,kHAAkH;AAClH,wBAAsB,gBAAgB,CACpC,GAAG,EAAE,SAAS,EACd,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,SAAS,IAAI,EAAE,EACtB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,EACjC,SAAS,SAAI,GACZ,OAAO,CAAC,gBAAgB,EAAE,CAAC,CAQ7B"}

package/dist/core/rollup.js

@@ -0,0 +1,60 @@
+import path from 'node:path';
+import { extractLinkTargets } from './graph/model.js';
+import { htmlCommentFence } from './markers.js';
+/** The single fenced region `rollup write` writes into, and the frontmatter timestamp it stamps alongside it. */
+export const ROLLUP_FENCE = htmlCommentFence('rollup');
+export const ROLLED_UP_FIELD = 'rolled_up';
+export function hasRollupSection(note) {
+    return note.body.includes(ROLLUP_FENCE.start);
+}
+function backlinksFor(notes, entityPath) {
+    const stem = path.basename(entityPath, '.md');
+    return notes.filter((n) => n.path !== entityPath && extractLinkTargets(n.body).includes(stem));
+}
+async function lastModified(git, root, relativePath) {
+    const result = await git.run(['log', '-1', '--format=%cI', '--', relativePath], { cwd: root, allowFailure: true });
+    const date = result.stdout.trim();
+    return date.length > 0 ? date : null;
+}
+/**
+ * context-organize spec (D4): staleness is computed, never stored — no
+ * cache, no ledger. An entity with no recorded timestamp (but at least one
+ * backlink) is always stale; otherwise it is stale once the gap between the
+ * newest backlink's last commit and the recorded timestamp exceeds
+ * `staleDays`, bounding noise from a backlink edited moments ago. A
+ * backlink with no commit history at all (freshly created, uncommitted)
+ * counts as newer than any timestamp, since it clearly postdates it.
+ */
+export async function checkRollupStaleness(git, root, entity, allNotes, staleDays) {
+    const recorded = entity.frontmatter?.[ROLLED_UP_FIELD];
+    const rolledUp = typeof recorded === 'string' ? recorded : null;
+    const backlinks = backlinksFor(allNotes, entity.path);
+    let newest = null;
+    for (const backlink of backlinks) {
+        const modified = (await lastModified(git, root, backlink.path)) ?? new Date(8640000000000000).toISOString();
+        if (!newest || new Date(modified).getTime() > new Date(newest.modified).getTime()) {
+            newest = { path: backlink.path, modified };
+        }
+    }
+    if (rolledUp === null) {
+        return newest ? { entity: entity.path, rolledUp: null, newestBacklink: newest } : null;
+    }
+    if (!newest)
+        return null;
+    const gapMs = new Date(newest.modified).getTime() - new Date(rolledUp).getTime();
+    if (gapMs < staleDays * 24 * 60 * 60 * 1000)
+        return null;
+    return { entity: entity.path, rolledUp, newestBacklink: newest };
+}
+/** Every entity with a rollup section (optionally narrowed to one), reported stale per `checkRollupStaleness`. */
+export async function findStaleRollups(git, root, notes, options = {}, staleDays = 0) {
+    const candidates = notes.filter((n) => hasRollupSection(n) && (!options.entity || n.path === options.entity));
+    const results = [];
+    for (const candidate of candidates) {
+        const entry = await checkRollupStaleness(git, root, candidate, notes, staleDays);
+        if (entry)
+            results.push(entry);
+    }
+    return results.sort((a, b) => a.entity.localeCompare(b.entity));
+}
+//# sourceMappingURL=rollup.js.map

package/dist/core/rollup.js.map

@@ -0,0 +1 @@
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package/dist/core/session.d.ts

@@ -6,6 +6,20 @@ import type { StoreConfig } from '../config/schema.js';
  */
 export declare function generateSessionBranchName(config: StoreConfig, now?: Date): string;
 export declare function isSessionBranch(config: StoreConfig, branch: string): boolean;
+/**
+ * session-submit-and-land spec: a worktree is ALSO recognized as a session
+ * by where it lives, not only by its branch's name — `session submit
+ * --branch <name>` renames the branch out from under the prefix, and a
+ * renamed session must stay a session for `session list`/`session reap`.
+ *
+ * Deliberately independent of any particular `store.root`: the worktree's
+ * OWN path shape is the durable identity — its immediate parent directory
+ * is named after the configured worktrees path — because the caller
+ * checking this (e.g. `session land --reap`, run FROM the very worktree it
+ * would remove) may itself resolve `store.root` to that same path, which
+ * would make a storeRoot-relative comparison meaningless.
+ */
+export declare function isSessionWorktreePath(config: StoreConfig, worktreePath: string): boolean;
 /** A branch name may contain "/"; a directory name may not treat that as a separator. */
 export declare function worktreeDirNameFor(branch: string): string;
 export declare function worktreePathFor(store: {

package/dist/core/session.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"session.d.ts","sourceRoot":"","sources":["../../src/core/session.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAEvD;;;;GAIG;AACH,wBAAgB,yBAAyB,CAAC,MAAM,EAAE,WAAW,EAAE,GAAG,GAAE,IAAiB,GAAG,MAAM,CAQ7F;AAED,wBAAgB,eAAe,CAAC,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAE5E;AAED,yFAAyF;AACzF,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEzD;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,WAAW,CAAA;CAAE,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAEpG"}
+{"version":3,"file":"session.d.ts","sourceRoot":"","sources":["../../src/core/session.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAEvD;;;;GAIG;AACH,wBAAgB,yBAAyB,CAAC,MAAM,EAAE,WAAW,EAAE,GAAG,GAAE,IAAiB,GAAG,MAAM,CAQ7F;AAED,wBAAgB,eAAe,CAAC,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAE5E;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAKxF;AAED,yFAAyF;AACzF,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAEzD;AAED,wBAAgB,eAAe,CAAC,KAAK,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,WAAW,CAAA;CAAE,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAEpG"}

package/dist/core/session.js

@@ -17,6 +17,25 @@ export function generateSessionBranchName(config, now = new Date()) {
 export function isSessionBranch(config, branch) {
     return branch.startsWith(config.session.branch_prefix);
 }
+/**
+ * session-submit-and-land spec: a worktree is ALSO recognized as a session
+ * by where it lives, not only by its branch's name — `session submit
+ * --branch <name>` renames the branch out from under the prefix, and a
+ * renamed session must stay a session for `session list`/`session reap`.
+ *
+ * Deliberately independent of any particular `store.root`: the worktree's
+ * OWN path shape is the durable identity — its immediate parent directory
+ * is named after the configured worktrees path — because the caller
+ * checking this (e.g. `session land --reap`, run FROM the very worktree it
+ * would remove) may itself resolve `store.root` to that same path, which
+ * would make a storeRoot-relative comparison meaningless.
+ */
+export function isSessionWorktreePath(config, worktreePath) {
+    const worktreesDirName = path.basename(config.session.worktrees_path);
+    const parts = path.resolve(worktreePath).split(path.sep);
+    const index = parts.lastIndexOf(worktreesDirName);
+    return index !== -1 && index === parts.length - 2;
+}
 /** A branch name may contain "/"; a directory name may not treat that as a separator. */
 export function worktreeDirNameFor(branch) {
     return branch.replace(/\//g, '-');

package/dist/core/session.js.map

@@ -1 +1 @@
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+{"version":3,"file":"session.js","sourceRoot":"","sources":["../../src/core/session.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,IAAI,MAAM,WAAW,CAAC;AAG7B;;;;GAIG;AACH,MAAM,UAAU,yBAAyB,CAAC,MAAmB,EAAE,GAAG,GAAS,IAAI,IAAI,EAAE;IACnF,MAAM,KAAK,GAAG,GAAG;SACd,WAAW,EAAE;SACb,OAAO,CAAC,OAAO,EAAE,EAAE,CAAC;SACpB,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC;SACtB,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC;IACrB,MAAM,MAAM,GAAG,WAAW,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;IAC9C,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,aAAa,GAAG,KAAK,IAAI,MAAM,EAAE,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,MAAmB,EAAE,MAAc;IACjE,OAAO,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC;AACzD,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,MAAM,UAAU,qBAAqB,CAAC,MAAmB,EAAE,YAAoB;IAC7E,MAAM,gBAAgB,GAAG,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,OAAO,CAAC,cAAc,CAAC,CAAC;IACtE,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACzD,MAAM,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,gBAAgB,CAAC,CAAC;IAClD,OAAO,KAAK,KAAK,CAAC,CAAC,IAAI,KAAK,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC;AACpD,CAAC;AAED,yFAAyF;AACzF,MAAM,UAAU,kBAAkB,CAAC,MAAc;IAC/C,OAAO,MAAM,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;AACpC,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,KAA4C,EAAE,MAAc;IAC1F,OAAO,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,cAAc,EAAE,kBAAkB,CAAC,MAAM,CAAC,CAAC,CAAC;AAChG,CAAC"}

package/dist/core/write-lifecycle/path-gate.d.ts

@@ -0,0 +1,20 @@
+import type { StoreConfig } from '../../config/schema.js';
+export interface PathGateResult {
+    ok: boolean;
+    reason?: string;
+}
+/**
+ * session-capture-command spec (D5): one path gate, used at commit time
+ * (`staged.path_allowlist`, via the pre-commit hook) and at capture time
+ * (`session capture`), so the two can never disagree.
+ *
+ * The symlink-escape rule is absolute and always enforced: `relativePath`
+ * must resolve inside the store even after every existing ancestor
+ * directory's symlinks are followed. The sanctioned-location rule is
+ * opt-in — with `write_lifecycle.writable_paths` empty (the default),
+ * every in-store path is accepted; once any path is declared, only a
+ * configured taxonomy layer, the inbox, a declared writable path, or a
+ * contexture-owned location passes.
+ */
+export declare function sanctionedPath(config: StoreConfig, root: string, relativePath: string): Promise<PathGateResult>;
+//# sourceMappingURL=path-gate.d.ts.map

package/dist/core/write-lifecycle/path-gate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"path-gate.d.ts","sourceRoot":"","sources":["../../../src/core/write-lifecycle/path-gate.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,wBAAwB,CAAC;AAG1D,MAAM,WAAW,cAAc;IAC7B,EAAE,EAAE,OAAO,CAAC;IACZ,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAuCD;;;;;;;;;;;;GAYG;AACH,wBAAsB,cAAc,CAAC,MAAM,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC,CAqCrH"}

package/dist/core/write-lifecycle/path-gate.js

@@ -0,0 +1,90 @@
+import { existsSync } from 'node:fs';
+import { realpath } from 'node:fs/promises';
+import path from 'node:path';
+import { configuredAdapters } from '../../adapters/registry.js';
+import { identityFilePaths } from '../identity.js';
+function normalizePrefix(prefix) {
+    return prefix.replace(/\/+$/, '');
+}
+function isUnderAnyPrefix(relativePath, prefixes) {
+    return prefixes.some((prefix) => {
+        const trimmed = normalizePrefix(prefix);
+        return relativePath === trimmed || relativePath.startsWith(`${trimmed}/`);
+    });
+}
+/** session-capture-command spec (D5): locations contexture itself owns are always sanctioned, regardless of writable_paths. */
+function contextureOwnedPrefixes(config) {
+    const prefixes = [
+        config.identity.path,
+        config.catalog.path,
+        config.harness.procedures_path,
+        config.harness.conventions_path,
+        ...identityFilePaths(config),
+    ];
+    try {
+        for (const adapter of configuredAdapters(config, 'harness-generation'))
+            prefixes.push(adapter.entryFileName);
+    }
+    catch {
+        // an adapter that fails to resolve is doctor's problem (adapters.compatibility) — never this gate's.
+    }
+    return prefixes;
+}
+function sanctionedPrefixesFor(config) {
+    return [
+        ...config.taxonomy.layers.map((layer) => layer.path),
+        config.ingest.inbox_path,
+        ...config.write_lifecycle.writable_paths,
+        ...contextureOwnedPrefixes(config),
+    ];
+}
+/**
+ * session-capture-command spec (D5): one path gate, used at commit time
+ * (`staged.path_allowlist`, via the pre-commit hook) and at capture time
+ * (`session capture`), so the two can never disagree.
+ *
+ * The symlink-escape rule is absolute and always enforced: `relativePath`
+ * must resolve inside the store even after every existing ancestor
+ * directory's symlinks are followed. The sanctioned-location rule is
+ * opt-in — with `write_lifecycle.writable_paths` empty (the default),
+ * every in-store path is accepted; once any path is declared, only a
+ * configured taxonomy layer, the inbox, a declared writable path, or a
+ * contexture-owned location passes.
+ */
+export async function sanctionedPath(config, root, relativePath) {
+    const normalizedRoot = path.resolve(root);
+    const target = path.resolve(root, relativePath);
+    const rel = path.relative(normalizedRoot, target).split(path.sep).join('/');
+    if (rel === '' || rel.startsWith('..') || path.isAbsolute(rel)) {
+        return { ok: false, reason: 'resolves outside the store' };
+    }
+    // Walk up to the deepest EXISTING ancestor, but never past the store root itself: a root (or a
+    // whole store) that doesn't exist yet on disk has no symlink to escape through, and the lexical
+    // check above already confirmed the path is nominally inside it.
+    let ancestor = target;
+    while (ancestor !== normalizedRoot && !existsSync(ancestor)) {
+        const parent = path.dirname(ancestor);
+        if (parent === ancestor)
+            break;
+        ancestor = parent;
+    }
+    if (existsSync(ancestor)) {
+        const realRoot = await realpath(normalizedRoot).catch(() => normalizedRoot);
+        const realAncestor = await realpath(ancestor).catch(() => ancestor);
+        const insideRoot = realAncestor === realRoot || realAncestor.startsWith(`${realRoot}${path.sep}`);
+        if (!insideRoot) {
+            return { ok: false, reason: 'escapes the store through a symbolic link' };
+        }
+    }
+    if (config.write_lifecycle.writable_paths.length === 0) {
+        return { ok: true };
+    }
+    if (!isUnderAnyPrefix(rel, sanctionedPrefixesFor(config))) {
+        return {
+            ok: false,
+            reason: 'is not under a configured taxonomy layer, the inbox, a declared writable path, or a contexture-owned location',
+        };
+    }
+    return { ok: true };
+}
+//# sourceMappingURL=path-gate.js.map

package/dist/core/write-lifecycle/path-gate.js.map

@@ -0,0 +1 @@
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package/dist/prompt/inquirer-prompter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"inquirer-prompter.d.ts","sourceRoot":"","sources":["../../src/prompt/inquirer-prompter.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE9C;;;;;;;;;;GAUG;AACH,wBAAgB,sBAAsB,IAAI,QAAQ,CAgBjD"}
+{"version":3,"file":"inquirer-prompter.d.ts","sourceRoot":"","sources":["../../src/prompt/inquirer-prompter.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE9C;;;;;;;;;;GAUG;AACH,wBAAgB,sBAAsB,IAAI,QAAQ,CAoBjD"}

package/dist/prompt/inquirer-prompter.js

@@ -1,4 +1,4 @@
-import { select } from '@inquirer/prompts';
+import { confirm, select } from '@inquirer/prompts';
 /**
  * The real prompter. Renders entirely to stderr via @inquirer/prompts'
  * `output` context option — never stdout, so no invocation mode can let
@@ -22,6 +22,9 @@ export function createInquirerPrompter() {
                 })),
             }, { output: process.stderr });
         },
+        async confirm(input) {
+            return confirm({ message: input.message, default: false }, { output: process.stderr });
+        },
     };
 }
 //# sourceMappingURL=inquirer-prompter.js.map

package/dist/prompt/inquirer-prompter.js.map

@@ -1 +1 @@
-{"version":3,"file":"inquirer-prompter.js","sourceRoot":"","sources":["../../src/prompt/inquirer-prompter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAG3C;;;;;;;;;;GAUG;AACH,MAAM,UAAU,sBAAsB;IACpC,OAAO;QACL,KAAK,CAAC,aAAa,CAAC,KAAK;YACvB,OAAO,MAAM,CACX;gBACE,OAAO,EAAE,KAAK,CAAC,OAAO;gBACtB,OAAO,EAAE,KAAK,CAAC,SAAS;gBACxB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;oBACjC,IAAI,EAAE,GAAG,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,WAAW,EAAE;oBACpC,KAAK,EAAE,CAAC,CAAC,EAAE;iBACZ,CAAC,CAAC;aACJ,EACD,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAC3B,CAAC;QACJ,CAAC;KACF,CAAC;AACJ,CAAC"}
+{"version":3,"file":"inquirer-prompter.js","sourceRoot":"","sources":["../../src/prompt/inquirer-prompter.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAGpD;;;;;;;;;;GAUG;AACH,MAAM,UAAU,sBAAsB;IACpC,OAAO;QACL,KAAK,CAAC,aAAa,CAAC,KAAK;YACvB,OAAO,MAAM,CACX;gBACE,OAAO,EAAE,KAAK,CAAC,OAAO;gBACtB,OAAO,EAAE,KAAK,CAAC,SAAS;gBACxB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;oBACjC,IAAI,EAAE,GAAG,CAAC,CAAC,IAAI,MAAM,CAAC,CAAC,WAAW,EAAE;oBACpC,KAAK,EAAE,CAAC,CAAC,EAAE;iBACZ,CAAC,CAAC;aACJ,EACD,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAC3B,CAAC;QACJ,CAAC;QAED,KAAK,CAAC,OAAO,CAAC,KAAK;YACjB,OAAO,OAAO,CAAC,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC;QACzF,CAAC;KACF,CAAC;AACJ,CAAC"}

package/dist/prompt/prompter.d.ts

@@ -20,5 +20,14 @@ export interface Prompter {
         choices: readonly ProfileChoice[];
         defaultId: string;
     }): Promise<string>;
+    /**
+     * session-submit-and-land spec: the fire gate before an external side
+     * effect (a merge, a worktree removal) — `false` means the operator
+     * declined and nothing happens. Implementations MUST render entirely to
+     * stderr, for the same --json-corruption reason as `selectProfile`.
+     */
+    confirm(input: {
+        message: string;
+    }): Promise<boolean>;
 }
 //# sourceMappingURL=prompter.d.ts.map

package/dist/prompt/prompter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"prompter.d.ts","sourceRoot":"","sources":["../../src/prompt/prompter.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,QAAQ;IACvB;;;;OAIG;IACH,aAAa,CAAC,KAAK,EAAE;QACnB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,EAAE,SAAS,aAAa,EAAE,CAAC;QAClC,SAAS,EAAE,MAAM,CAAC;KACnB,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;CACrB"}
+{"version":3,"file":"prompter.d.ts","sourceRoot":"","sources":["../../src/prompt/prompter.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AACH,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,QAAQ;IACvB;;;;OAIG;IACH,aAAa,CAAC,KAAK,EAAE;QACnB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,EAAE,SAAS,aAAa,EAAE,CAAC;QAClC,SAAS,EAAE,MAAM,CAAC;KACnB,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC;IAEpB;;;;;OAKG;IACH,OAAO,CAAC,KAAK,EAAE;QAAE,OAAO,EAAE,MAAM,CAAA;KAAE,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;CACvD"}

package/dist/run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../src/run.ts"],"names":[],"mappings":"AA2BA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,eAAe,CAAC;AAE5C,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAOhD;;;;;GAKG;AACH,eAAO,MAAM,aAAa,YAAI,MAAM,EAAE,QAAQ,CAAU,CAAC;AAiFzD;;;;GAIG;AACH,wBAAsB,GAAG,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAkZjF"}
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../src/run.ts"],"names":[],"mappings":"AAkCA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,eAAe,CAAC;AAE5C,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAOhD;;;;;GAKG;AACH,eAAO,MAAM,aAAa,YAAI,MAAM,EAAE,QAAQ,CAAU,CAAC;AAiFzD;;;;GAIG;AACH,wBAAsB,GAAG,CAAC,IAAI,EAAE,SAAS,MAAM,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CA8iBjF"}

package/dist/run.js

@@ -10,18 +10,25 @@ import * as ingestCommand from './commands/ingest.js';
 import * as lintCommand from './commands/lint.js';
 import * as migrateCommand from './commands/migrate.js';
 import * as graphBuildCommand from './commands/graph-build.js';
+import * as entryAppendCommand from './commands/entry-append.js';
 import * as graphQueryCommand from './commands/graph-query.js';
+import * as identityCommand from './commands/identity.js';
 import * as initCommand from './commands/init.js';
 import * as noteResolveCommand from './commands/note-resolve.js';
 import * as sessionAbandonCommand from './commands/session-abandon.js';
+import * as sessionCaptureCommand from './commands/session-capture.js';
+import * as sessionLandCommand from './commands/session-land.js';
 import * as sessionListCommand from './commands/session-list.js';
 import * as sessionReapCommand from './commands/session-reap.js';
 import * as sessionStartCommand from './commands/session-start.js';
 import * as rollupGatherCommand from './commands/rollup-gather.js';
+import * as rollupStaleCommand from './commands/rollup-stale.js';
 import * as rollupWriteCommand from './commands/rollup-write.js';
 import * as sessionSubmitCommand from './commands/session-submit.js';
+import * as sourceAddAltCommand from './commands/source-add-alt.js';
 import * as sourceCheckCommand from './commands/source-check.js';
 import * as sourceHashCommand from './commands/source-hash.js';
+import * as sourceStampCommand from './commands/source-stamp.js';
 import { buildEnvelope } from './core/envelope.js';
 import { ContextureError } from './core/errors.js';
 import { ExitCode } from './core/exit-codes.js';
@@ -139,13 +146,27 @@ export async function run(argv, env) {
     });
     program
         .command('check <path>')
-        .description('the disclosure-policy tri-state verdict (ALLOW/DENY/ASK) for a note and an audience')
-        .requiredOption('--audience <audience>', 'the audience the content would be disclosed to')
+        .description('the disclosure-policy tri-state verdict (ALLOW/DENY/ASK) for a note and an audience, or --scan for a leak scan')
+        .option('--audience <audience>', 'the audience the content would be disclosed to (required unless --scan is given)')
+        .option('--scan', 'scan this note for content matching another context\'s markers that this note is not visible to')
         .action(async (notePath, cmdOpts, cmd) => {
         const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
         result = await runCommand('check', runEnv, jsonMode, async () => {
             const store = await openStore(runEnv, { root });
-            return checkCommand.execute(runEnv, store, { path: notePath, audience: cmdOpts.audience });
+            return checkCommand.execute(runEnv, store, { path: notePath, audience: cmdOpts.audience, scan: cmdOpts.scan });
+        });
+    });
+    const entryCommand = program.command('entry').description('structured writes into a fenced region');
+    entryCommand
+        .command('append <path>')
+        .description('append a line into a contexture:<region> fenced region, creating it if absent')
+        .requiredOption('--region <name>', 'the region name')
+        .requiredOption('--text <text>', 'the line to append')
+        .action(async (notePath, cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('entry.append', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return entryAppendCommand.execute(runEnv, store, { path: notePath, region: cmdOpts.region, text: cmdOpts.text });
         });
     });
     const noteCommand = program.command('note').description('inspect a single note');
@@ -211,6 +232,7 @@ export async function run(argv, env) {
         .description('list nodes reachable from <node> within --depth hops')
         .option('--depth <n>', 'hop count', (v) => Number.parseInt(v, 10), 1)
         .option('--direction <dir>', 'in, out, or both', 'both')
+        .option('--type <name>', 'follow only edges of this type (a configured relation name, or link)')
         .option('--as <context>', 'filter to notes visible to this context before traversal')
         .action(async (node, cmdOpts, cmd) => {
         const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
@@ -220,6 +242,7 @@ export async function run(argv, env) {
                 node,
                 depth: cmdOpts.depth,
                 direction: cmdOpts.direction,
+                type: cmdOpts.type,
                 as: cmdOpts.as,
             });
         });
@@ -258,6 +281,29 @@ export async function run(argv, env) {
             return graphQueryCommand.executeHubs(store, { top: cmdOpts.top, as: cmdOpts.as });
         });
     });
+    graphQueryCommandGroup
+        .command('clusters')
+        .description('every positional cluster with its note count')
+        .option('--as <context>', 'filter to notes visible to this context first')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('graph.query.clusters', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return graphQueryCommand.executeClusters(store, { as: cmdOpts.as });
+        });
+    });
+    graphQueryCommandGroup
+        .command('bridges')
+        .description('notes that link into the most other clusters')
+        .option('--top <n>', 'how many to list (default: the configured bridge limit)', (v) => Number.parseInt(v, 10))
+        .option('--as <context>', 'filter to notes visible to this context before ranking')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('graph.query.bridges', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return graphQueryCommand.executeBridges(store, { top: cmdOpts.top, as: cmdOpts.as });
+        });
+    });
     graphQueryCommandGroup
         .command('orphans')
         .description('nodes with no links in or out')
@@ -298,7 +344,7 @@ export async function run(argv, env) {
     });
     sourceCommand
         .command('check <path>')
-        .description('two-stage dedupe verdict: already-ingested, alternate-source-match, multiple-matches, or new')
+        .description('two-stage dedupe verdict: new, already-ingested, drift, alternate-source-match, or multiple-matches')
         .requiredOption('--source-id <id>', "the candidate material's source identifier")
         .action(async (notePath, cmdOpts, cmd) => {
         const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
@@ -307,6 +353,29 @@ export async function run(argv, env) {
             return sourceCheckCommand.execute(runEnv, store, { path: notePath, sourceId: cmdOpts.sourceId });
         });
     });
+    sourceCommand
+        .command('stamp <path>')
+        .description('record source identity (and, by default, the current content hash) on a note directly')
+        .requiredOption('--id <id>', 'the source identifier to record')
+        .option('--hash <hash>', 'the content hash to record (default: computed from the note\'s current body)')
+        .action(async (notePath, cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('source.stamp', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return sourceStampCommand.execute(runEnv, store, { path: notePath, id: cmdOpts.id, hash: cmdOpts.hash });
+        });
+    });
+    sourceCommand
+        .command('add-alt <path>')
+        .description('append an alternative source identity to an already-ingested note')
+        .requiredOption('--id <id>', 'the alternative source identifier')
+        .action(async (notePath, cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('source.add-alt', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return sourceAddAltCommand.execute(runEnv, store, { path: notePath, id: cmdOpts.id });
+        });
+    });
     program
         .command('lint')
         .description('health observations that never fail the run: orphans, broken links, uningested inbox material, catalog gaps')
@@ -349,6 +418,55 @@ export async function run(argv, env) {
             return rollupWriteCommand.execute(runEnv, store, { entity, contentFile: cmdOpts.contentFile });
         });
     });
+    rollupCommand
+        .command('stale')
+        .description('list entity notes whose backlinks moved past their last rollup timestamp')
+        .option('--for <entity>', 'check only this entity')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('rollup.stale', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return rollupStaleCommand.execute(runEnv, store, { for: cmdOpts.for });
+        });
+    });
+    const identityCommandGroup = program.command('identity').description('edit an identity role\'s file by entry — add, replace, or remove');
+    identityCommandGroup
+        .command('add')
+        .description('append a new entry')
+        .requiredOption('--file <role>', 'posture, world-facts, or user-facts')
+        .requiredOption('--text <text>', 'the entry text')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('identity.add', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return identityCommand.executeAdd(store, cmdOpts);
+        });
+    });
+    identityCommandGroup
+        .command('replace')
+        .description('replace the single entry containing --match')
+        .requiredOption('--file <role>', 'posture, world-facts, or user-facts')
+        .requiredOption('--match <text>', 'a unique substring of the entry to replace')
+        .requiredOption('--text <text>', 'the replacement text')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('identity.replace', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return identityCommand.executeReplace(store, cmdOpts);
+        });
+    });
+    identityCommandGroup
+        .command('remove')
+        .description('remove the single entry containing --match')
+        .requiredOption('--file <role>', 'posture, world-facts, or user-facts')
+        .requiredOption('--match <text>', 'a unique substring of the entry to remove')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('identity.remove', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return identityCommand.executeRemove(store, cmdOpts);
+        });
+    });
     const adaptersCommand = program.command('adapters').description('harness-generation, identity-injection, and forge adapters');
     adaptersCommand
         .command('generate')
@@ -409,6 +527,7 @@ export async function run(argv, env) {
         .option('--message <text>', 'commit message for any remaining staged changes')
         .option('--title <text>', 'pull request title')
         .option('--body <text>', 'pull request body')
+        .option('--branch <name>', 'rename the session branch before pushing, so a generated name never reaches the forge')
         .action(async (cmdOpts, cmd) => {
         const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
         result = await runCommand('session.submit', runEnv, jsonMode, async () => {
@@ -416,6 +535,32 @@ export async function run(argv, env) {
             return sessionSubmitCommand.execute(runEnv, store, cmdOpts);
         });
     });
+    sessionCommand
+        .command('capture')
+        .description('apply an approved end-of-session capture proposal: create or append notes, apply identity deltas')
+        .requiredOption('--proposal <path>', 'a YAML file of approved notes / world_facts / user_facts items')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('session.capture', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return sessionCaptureCommand.execute(store, cmdOpts);
+        });
+    });
+    sessionCommand
+        .command('land')
+        .description('complete a reviewed session: merge its pull request, sync the default branch, optionally reap the worktree')
+        .option('--pr <number>', 'the pull request number to land (default: the one for the current or --branch session)', (v) => Number.parseInt(v, 10))
+        .option('--branch <name>', 'the session branch to land (default: the current branch)')
+        .option('--yes', 'consent to the merge without an interactive prompt')
+        .option('--merge-method <method>', 'squash, merge, or rebase', 'squash')
+        .option('--reap', 'remove the session worktree afterward, if it is clean and the pull request merged')
+        .action(async (cmdOpts, cmd) => {
+        const { runEnv, jsonMode, root } = deriveRunEnv(env, cmd);
+        result = await runCommand('session.land', runEnv, jsonMode, async () => {
+            const store = await openStore(runEnv, { root });
+            return sessionLandCommand.execute(runEnv, store, cmdOpts);
+        });
+    });
     sessionCommand
         .command('abandon <branch>')
         .description('discard a session: remove its worktree and delete its branch')