ctxo-mcp 0.3.1 → 0.4.2

package/README.md

@@ -1,25 +1,43 @@
-# Ctxo
+<div align="center">
 
-**Code intelligence for AI agents — one call instead of hundreds.**
+[![npm version](https://img.shields.io/npm/v/ctxo-mcp.svg)](https://www.npmjs.com/package/ctxo-mcp)
+[![CI](https://github.com/alperhankendi/Ctxo/actions/workflows/ci.yml/badge.svg)](https://github.com/alperhankendi/Ctxo/actions/workflows/ci.yml)
+[![Release](https://github.com/alperhankendi/Ctxo/actions/workflows/release.yml/badge.svg)](https://github.com/alperhankendi/Ctxo/actions/workflows/release.yml)
 
-AI coding assistants waste context window reading files one by one, still missing dependencies. Ctxo gives them the full picture in a single MCP call: symbol graphs, blast radius, git intent, and risk scores.
+**Code intelligence for AI agents one call instead of hundreds.**
 
-```
-Context per query set (full codebase investigation):
+<picture>
+  <source media="(prefers-color-scheme: dark)" srcset="docs/img/hero-svg.svg">
+  <source media="(prefers-color-scheme: light)" srcset="docs/img/hero-svg.svg">
+  <img alt="Ctxo — Code intelligence for AI agents" src="docs/img/hero-svg.svg" width="100%">
+</picture>
 
-Manual   ████████████████████████████████████████  140,000 tokens
-Ctxo     █░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░    2,900 tokens  → 48x less
+</div>
 
-Tool calls per query set:
+***
 
-Manual   ████████████████████████████████████████  409+ calls
-Ctxo     █░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░    8 calls       → 51x fewer
+### The Problem
 
-Context after 10 investigation rounds:
+AI coding assistants like Copilot, Claude Code, and Cursor rely on generic tools  `grep`, `find`, file reads to understand your codebase. On brownfield projects with thousands of files, this brute-force exploration creates a chain of problems:
 
-Manual   ██████████████████████████████████████████ 140% — OOM at round 7
-Ctxo     █░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░░ 2.9% — 97% free for coding
-```
+* **Context window saturation** The agent fills its window reading files one by one, leaving little room for actual reasoning
+* **Partial context hallucination** It sees a function but misses its dependencies, leading to wrong assumptions and broken suggestions
+* **Lost-in-the-middle** Critical information buried deep in a long context gets ignored by the model
+* **Context poisoning** Irrelevant code pulled in during exploration biases the model's output
+* **Iteration overhead** Understanding one symbol takes 10-20 tool calls, each adding more noise to the context
+* **Stale reasoning** After too many iterations, the agent contradicts its own earlier assumptions
+
+The result: more tokens burned, slower responses, higher cost, and lower quality output.
+
+### The Solution
+
+Ctxo is an **MCP server** that **enhances** your existing AI tools with dependency-aware, history-enriched code intelligence. Instead of hundreds of `grep` and `read_file` calls, your agent gets the full picture symbol graphs, blast radius, git intent, and risk scores in a **single MCP call**.
+
+* **Clean context** Only relevant symbols and their transitive dependencies, nothing more
+* **Fewer iterations** One call replaces an entire exploration cycle
+* **Higher quality** The agent reasons over structured, complete context instead of fragmented file reads
+
+> A senior developer takes \~10 minutes to gather context across files. Ctxo delivers that same context in **under 500ms**.
 
 ## Quick Start
 
@@ -55,22 +73,22 @@ npx ctxo-mcp index
 
 ## 14 Tools
 
-| Tool                        | What it does                                                     |
-| --------------------------- | ---------------------------------------------------------------- |
-| `get_logic_slice`           | Symbol + transitive dependencies (L1-L4 progressive detail)      |
-| `get_blast_radius`          | What breaks if this changes (3-tier: confirmed/likely/potential) |
-| `get_architectural_overlay` | Project layer map (Domain/Infrastructure/Adapter)                |
-| `get_why_context`           | Git commit intent + anti-pattern warnings (reverts, rollbacks)   |
-| `get_change_intelligence`   | Complexity x churn composite score                               |
-| `find_dead_code`            | Unreachable symbols, unused exports, scaffolding markers         |
-| `get_context_for_task`      | Task-optimized context (fix/extend/refactor/understand)          |
-| `get_ranked_context`        | BM25 + PageRank search within token budget                       |
-| `search_symbols`            | Symbol name/regex search across index                            |
-| `get_changed_symbols`       | Symbols in recently changed files (git diff)                     |
-| `find_importers`            | Reverse dependency lookup ("who uses this?")                     |
-| `get_class_hierarchy`       | Class inheritance tree (ancestors + descendants)                 |
-| `get_symbol_importance`     | PageRank centrality ranking                                      |
-| `get_pr_impact`             | Full PR risk assessment in a single call                         |
+| Tool                        | What it does                                                                             |
+| --------------------------- | ---------------------------------------------------------------------------------------- |
+| `get_logic_slice`           | Symbol + transitive dependencies (L1-L4 progressive detail)                              |
+| `get_blast_radius`          | What breaks if this changes (3-tier: confirmed/likely/potential)                         |
+| `get_architectural_overlay` | Project layer map (Domain/Infrastructure/Adapter)                                        |
+| `get_why_context`           | Git commit intent + anti-pattern warnings (reverts, rollbacks)                           |
+| `get_change_intelligence`   | Complexity x churn composite score                                                       |
+| `find_dead_code`            | Unreachable symbols, unused exports, scaffolding markers                                 |
+| `get_context_for_task`      | Task-optimized context (fix/extend/refactor/understand)                                  |
+| `get_ranked_context`        | Two-phase BM25 search (camelCase-aware, fuzzy correction) + PageRank within token budget |
+| `search_symbols`            | Symbol name/regex search across index (`mode: 'fts'` for BM25)                           |
+| `get_changed_symbols`       | Symbols in recently changed files (git diff)                                             |
+| `find_importers`            | Reverse dependency lookup ("who uses this?")                                             |
+| `get_class_hierarchy`       | Class inheritance tree (ancestors + descendants)                                         |
+| `get_symbol_importance`     | PageRank centrality ranking                                                              |
+| `get_pr_impact`             | Full PR risk assessment in a single call                                                 |
 
 ## Tool Selection Guide
 
@@ -96,19 +114,55 @@ npx ctxo-mcp watch                # File watcher for incremental re-index
 npx ctxo-mcp init                 # Install git hooks (post-commit, post-merge)
 npx ctxo-mcp status               # Show index manifest
 npx ctxo-mcp sync                 # Rebuild SQLite cache from committed JSON
+npx ctxo-mcp stats                # Show usage statistics
+npx ctxo-mcp stats --json         # Machine-readable output
+npx ctxo-mcp stats --days 7       # Last 7 days only
+npx ctxo-mcp stats --clear        # Delete all session data
+```
+
+**Example output:**
+
+```
+npx ctxo-mcp stats
+
+  Usage Summary (all time)
+  ────────────────────────────────────────
+  Total tool calls:      30
+  Total tokens served:   26.0K
+
+  Top Tools
+  ────────────────────────────────────────
+  get_logic_slice         14 calls      avg 352 tokens
+  get_blast_radius        3 calls       avg 1,279 tokens
+  get_ranked_context      3 calls       avg 898 tokens
+  find_importers          2 calls       avg 1,342 tokens
+  get_context_for_task    2 calls       avg 740 tokens
+
+  Top Queried Symbols
+  ────────────────────────────────────────
+  SymbolNode                      15 queries
+  LogicSliceQuery                 4 queries
+  SqliteStorageAdapter            2 queries
+
+  Detail Level Distribution
+  ────────────────────────────────────────
+  L1: ███░░░░░░░   25%
+  L2: ███░░░░░░░   25%
+  L3: ███░░░░░░░   25%
+  L4: ███░░░░░░░   25%
 ```
 
 ## Features
 
-**Response Envelope** — All responses include `_meta` with item counts, truncation info, and drill-in hints. Large results auto-truncated at 8KB (configurable via `CTXO_RESPONSE_LIMIT`).
+**Response Envelope** All responses include `_meta` with item counts, truncation info, and drill-in hints. Large results auto-truncated at 8KB (configurable via `CTXO_RESPONSE_LIMIT`).
 
-**Intent Filtering** — 4 tools accept `intent` parameter for keyword-based result filtering. `get_blast_radius(symbolId, intent: "test")` returns only test-related impacts.
+**Intent Filtering** 4 tools accept `intent` parameter for keyword-based result filtering. `get_blast_radius(symbolId, intent: "test")` returns only test-related impacts.
 
-**Tool Annotations** — All tools declare `readOnlyHint: true`, `idempotentHint: true`, `openWorldHint: false` for safe auto-approval in agent frameworks.
+**Tool Annotations** All tools declare `readOnlyHint: true`, `idempotentHint: true`, `openWorldHint: false` for safe auto-approval in agent frameworks.
 
-**Privacy Masking** — AWS keys, GCP service accounts, Azure connection strings, JWTs, private IPs, env secrets automatically redacted. Extensible via `.ctxo/masking.json`.
+**Privacy Masking** AWS keys, GCP service accounts, Azure connection strings, JWTs, private IPs, env secrets automatically redacted. Extensible via `.ctxo/masking.json`.
 
-**Debug Mode** — `DEBUG=ctxo:*` for all debug output, or `DEBUG=ctxo:git,ctxo:storage` for specific namespaces.
+**Debug Mode** `DEBUG=ctxo:*` for all debug output, or `DEBUG=ctxo:git,ctxo:storage` for specific namespaces.
 
 **Per-tool savings vs manual approach:**
 
@@ -162,9 +216,19 @@ See [Agentic AI Integration Guide](docs/agentic-ai-integration.md) for LangChain
 | Go                    | tree-sitter | Syntax | Structs, interfaces, functions, methods, import edges            |
 | C#                    | tree-sitter | Syntax | Classes, interfaces, methods, enums, namespace qualification     |
 
+## Index Visualizer
+
+Ctxo ships with an interactive visualizer that renders your codebase index as a dependency graph. Explore symbols, edges, layers, and PageRank scores visually deployed automatically to GitHub Pages on every push.
+
+![1.00](docs/img/ui.png)
+
+[Open Live Visualizer](https://alperhankendi.github.io/Ctxo/ctxo-visualizer.html)
+
 ## How It Works
 
-Ctxo builds a **committed JSON index** (`.ctxo/index/`) that captures symbols, dependency edges, git history, and co-change data. The MCP server reads this index to answer queries — no runtime parsing, no external services.
+<img src="docs/img/mcp-server.png" alt="Ctxo MCP Server Architecture" width="400">
+
+Ctxo builds a **committed JSON index** (`.ctxo/index/`) that captures symbols, dependency edges, git history, and co-change data. The MCP server reads this index to answer queries no runtime parsing, no external services.
 
 ```
 .ctxo/
@@ -179,7 +243,8 @@ Ctxo builds a **committed JSON index** (`.ctxo/index/`) that captures symbols, d
 * [npm](https://www.npmjs.com/package/ctxo-mcp)
 * [Changelog](CHANGELOG.md)
 * [LLM Reference](llms-full.txt)
-* [Validation Runbook](docs/runbook/mcp-validation/mcp-validation.md)
+* [MCP Validation Runbook](docs/runbook/mcp-validation/mcp-validation.md)
+* [CLI Validation Runbook](docs/runbook/cli-validation/cli-validation.md)
 * [Architecture](docs/artifacts/architecture.md)
 * [PRD](docs/artifacts/prd.md)
 

package/dist/{chunk-N6GPODUY.js → chunk-4OI75JDS.js}

@@ -146,4 +146,4 @@ export {
   DetailLevelSchema,
   JsonIndexReader
 };
-//# sourceMappingURL=chunk-N6GPODUY.js.map
+//# sourceMappingURL=chunk-4OI75JDS.js.map

package/dist/{chunk-N6GPODUY.js.map → chunk-4OI75JDS.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/adapters/storage/json-index-reader.ts","../src/core/types.ts"],"sourcesContent":["import { readFileSync, readdirSync, existsSync, realpathSync } from 'node:fs';\nimport { join, relative } from 'node:path';\nimport { FileIndexSchema, type FileIndex } from '../../core/types.js';\n\nexport class JsonIndexReader {\n  private readonly indexDir: string;\n\n  constructor(ctxoRoot: string) {\n    this.indexDir = join(ctxoRoot, 'index');\n  }\n\n  readAll(): FileIndex[] {\n    if (!existsSync(this.indexDir)) {\n      return [];\n    }\n\n    const jsonFiles = this.collectJsonFiles(this.indexDir);\n    const results: FileIndex[] = [];\n\n    for (const filePath of jsonFiles) {\n      const parsed = this.readSingle(filePath);\n      if (parsed) {\n        results.push(parsed);\n      }\n    }\n\n    return results;\n  }\n\n  readSingle(absolutePath: string): FileIndex | undefined {\n    try {\n      const raw = readFileSync(absolutePath, 'utf-8');\n      const data: unknown = JSON.parse(raw);\n      const result = FileIndexSchema.safeParse(data);\n\n      if (!result.success) {\n        const rel = relative(this.indexDir, absolutePath);\n        console.error(\n          `[ctxo:json-reader] Invalid schema in ${rel}: ${result.error.message}`,\n        );\n        return undefined;\n      }\n\n      return result.data;\n    } catch (err) {\n      const rel = relative(this.indexDir, absolutePath);\n      console.error(\n        `[ctxo:json-reader] Failed to read ${rel}: ${(err as Error).message}`,\n      );\n      return undefined;\n    }\n  }\n\n  private collectJsonFiles(dir: string, visited: Set<string> = new Set()): string[] {\n    const realDir = realpathSync(dir);\n    if (visited.has(realDir)) return []; // Guard against symlink loops\n    visited.add(realDir);\n\n    const files: string[] = [];\n\n    for (const entry of readdirSync(dir, { withFileTypes: true })) {\n      if (entry.isSymbolicLink()) continue; // Skip symlinks entirely\n\n      const fullPath = join(dir, entry.name);\n      if (entry.isDirectory()) {\n        files.push(...this.collectJsonFiles(fullPath, visited));\n      } else if (entry.name.endsWith('.json') && entry.name !== 'co-changes.json') {\n        files.push(fullPath);\n      }\n    }\n\n    return files;\n  }\n}\n","import { z } from 'zod';\n\n// ── Symbol Kinds ────────────────────────────────────────────────\n\nexport const SYMBOL_KINDS = [\n  'function',\n  'class',\n  'interface',\n  'method',\n  'variable',\n  'type',\n] as const;\n\nexport const SymbolKindSchema = z.enum(SYMBOL_KINDS);\nexport type SymbolKind = z.infer<typeof SymbolKindSchema>;\n\n// ── Edge Kinds ──────────────────────────────────────────────────\n\nexport const EDGE_KINDS = [\n  'imports',\n  'calls',\n  'extends',\n  'implements',\n  'uses',\n] as const;\n\nexport const EdgeKindSchema = z.enum(EDGE_KINDS);\nexport type EdgeKind = z.infer<typeof EdgeKindSchema>;\n\n// ── Detail Levels ───────────────────────────────────────────────\n\nexport const DETAIL_LEVELS = [1, 2, 3, 4] as const;\n\nexport const DetailLevelSchema = z.union([\n  z.literal(1),\n  z.literal(2),\n  z.literal(3),\n  z.literal(4),\n]);\nexport type DetailLevel = z.infer<typeof DetailLevelSchema>;\n\n// ── Symbol ID ───────────────────────────────────────────────────\n\n/**\n * Format: \"<relativeFile>::<name>::<kind>\"\n * Example: \"src/foo.ts::myFn::function\"\n */\nexport const SymbolIdSchema = z\n  .string()\n  .min(1)\n  .refine(\n    (value) => {\n      const parts = value.split('::');\n      if (parts.length !== 3) return false;\n      const [file, name, kind] = parts;\n      if (!file || !name || !kind) return false;\n      return SymbolKindSchema.safeParse(kind).success;\n    },\n    { message: 'Symbol ID must match format \"<file>::<name>::<kind>\"' },\n  );\nexport type SymbolId = z.infer<typeof SymbolIdSchema>;\n\n// ── Symbol Node ─────────────────────────────────────────────────\n\nexport const SymbolNodeSchema = z\n  .object({\n    symbolId: SymbolIdSchema,\n    name: z.string().min(1),\n    kind: SymbolKindSchema,\n    startLine: z.number().int().nonnegative(),\n    endLine: z.number().int().nonnegative(),\n    startOffset: z.number().int().nonnegative().optional(),\n    endOffset: z.number().int().nonnegative().optional(),\n  })\n  .refine((node) => node.endLine >= node.startLine, {\n    message: 'endLine must be >= startLine',\n  });\nexport type SymbolNode = z.infer<typeof SymbolNodeSchema>;\n\n// ── Graph Edge ──────────────────────────────────────────────────\n\nexport const GraphEdgeSchema = z.object({\n  from: SymbolIdSchema,\n  to: SymbolIdSchema,\n  kind: EdgeKindSchema,\n  typeOnly: z.boolean().optional(),\n});\nexport type GraphEdge = z.infer<typeof GraphEdgeSchema>;\n\n// ── Commit Intent ───────────────────────────────────────────────\n\nexport const CommitIntentSchema = z.object({\n  hash: z.string().min(1),\n  message: z.string(),\n  date: z.string().min(1),\n  kind: z.literal('commit'),\n});\nexport type CommitIntent = z.infer<typeof CommitIntentSchema>;\n\n// ── Anti-Pattern ────────────────────────────────────────────────\n\nexport const AntiPatternSchema = z.object({\n  hash: z.string().min(1),\n  message: z.string(),\n  date: z.string().min(1),\n});\nexport type AntiPattern = z.infer<typeof AntiPatternSchema>;\n\n// ── File Index ──────────────────────────────────────────────────\n\nexport const ComplexityMetricsSchema = z.object({\n  symbolId: z.string().min(1),\n  cyclomatic: z.number().nonnegative(),\n});\n\nexport const FileIndexSchema = z.object({\n  file: z.string().min(1),\n  lastModified: z.number().nonnegative(),\n  contentHash: z.string().optional(),\n  symbols: z.array(SymbolNodeSchema),\n  edges: z.array(GraphEdgeSchema),\n  complexity: z.array(ComplexityMetricsSchema).optional(),\n  intent: z.array(CommitIntentSchema),\n  antiPatterns: z.array(AntiPatternSchema),\n});\nexport type FileIndex = z.infer<typeof FileIndexSchema>;\n\n// ── Logic-Slice Result ──────────────────────────────────────────\n\nexport interface LogicSliceResult {\n  readonly root: SymbolNode;\n  readonly dependencies: readonly SymbolNode[];\n  readonly edges: readonly GraphEdge[];\n}\n\n// ── Formatted Slice ─────────────────────────────────────────────\n\nexport interface TruncationInfo {\n  readonly truncated: true;\n  readonly reason: 'token_budget_exceeded';\n}\n\nexport interface FormattedSlice {\n  readonly root: SymbolNode;\n  readonly dependencies: readonly SymbolNode[];\n  readonly edges: readonly GraphEdge[];\n  readonly level: DetailLevel;\n  readonly levelDescription?: string;\n  readonly truncation?: TruncationInfo;\n}\n\n// ── Complexity & Churn ──────────────────────────────────────────\n\nexport interface ComplexityMetrics {\n  readonly symbolId: string;\n  readonly cyclomatic: number;\n}\n\nexport interface ChurnData {\n  readonly filePath: string;\n  readonly commitCount: number;\n}\n\nexport const SCORE_BANDS = ['low', 'medium', 'high'] as const;\nexport type ScoreBand = (typeof SCORE_BANDS)[number];\n\nexport interface ChangeIntelligenceScore {\n  readonly symbolId: string;\n  readonly complexity: number;\n  readonly churn: number;\n  readonly composite: number;\n  readonly band: ScoreBand;\n}\n\n// ── Why-Context Result ──────────────────────────────────────────\n\nexport interface WhyContextResult {\n  readonly commitHistory: readonly CommitIntent[];\n  readonly antiPatternWarnings: readonly AntiPattern[];\n  readonly changeIntelligence?: ChangeIntelligenceScore;\n}\n\n// ── Co-Change Analysis ─────────────────────────────────────────\n\nexport interface CoChangeEntry {\n  readonly file1: string;\n  readonly file2: string;\n  readonly sharedCommits: number;\n  readonly frequency: number;\n}\n\nexport interface CoChangeMatrix {\n  readonly version: 1;\n  readonly timestamp: number;\n  readonly entries: readonly CoChangeEntry[];\n}\n\n// ── Commit Record (from git adapter) ────────────────────────────\n\nexport interface CommitRecord {\n  readonly hash: string;\n  readonly message: string;\n  readonly date: string;\n  readonly author: string;\n}\n\n// ── Blame Line (from git adapter) ───────────────────────────────\n\nexport interface BlameLine {\n  readonly hash: string;\n  readonly lineNumber: number;\n  readonly author: string;\n  readonly date: 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package/dist/{chunk-XSHNN6PU.js → chunk-WZKXGKKI.js}

@@ -1,7 +1,7 @@
 #!/usr/bin/env node
 import {
   JsonIndexReader
-} from "./chunk-N6GPODUY.js";
+} from "./chunk-4OI75JDS.js";
 
 // src/core/logger.ts
 function isDebugEnabled(namespace) {
@@ -68,15 +68,29 @@ var SqliteStorageAdapter = class {
   }
   async initEmpty() {
     const SQL = await initSqlJs();
-    this.db = new SQL.Database();
+    if (existsSync(this.dbPath)) {
+      try {
+        const buffer = readFileSync(this.dbPath);
+        this.db = new SQL.Database(buffer);
+      } catch {
+        this.db = new SQL.Database();
+      }
+    } else {
+      this.db = new SQL.Database();
+    }
     this.createTables();
+    this.clearIndexTables();
   }
-  database() {
+  /** Returns the underlying sql.js Database instance. Throws if not initialized. */
+  getDb() {
     if (!this.db) {
       throw new Error("SqliteStorageAdapter not initialized. Call init() first.");
     }
     return this.db;
   }
+  database() {
+    return this.getDb();
+  }
   verifyIntegrity() {
     const db = this.database();
     const result = db.exec("PRAGMA integrity_check");
@@ -121,6 +135,12 @@ var SqliteStorageAdapter = class {
     db.run("CREATE INDEX IF NOT EXISTS idx_edges_from ON edges(from_symbol)");
     db.run("CREATE INDEX IF NOT EXISTS idx_edges_to ON edges(to_symbol)");
   }
+  clearIndexTables() {
+    const db = this.database();
+    db.run("DELETE FROM edges");
+    db.run("DELETE FROM symbols");
+    db.run("DELETE FROM files");
+  }
   rebuildFromJson() {
     const reader = new JsonIndexReader(this.ctxoRoot);
     const indices = reader.readAll();
@@ -371,12 +391,12 @@ var SimpleGitAdapter = class {
   }
   async getCommitHistory(filePath, maxCount) {
     try {
-      const log3 = await this.git.log({
+      const log4 = await this.git.log({
         file: filePath,
         "--follow": null,
         ...maxCount ? { maxCount } : {}
       });
-      return log3.all.map((entry) => ({
+      return log4.all.map((entry) => ({
         hash: entry.hash,
         message: entry.message,
         date: entry.date,
@@ -389,9 +409,9 @@ var SimpleGitAdapter = class {
   }
   async getBatchHistory(maxCount = 20) {
     try {
-      const log3 = await this.git.log({ maxCount: maxCount * 50, "--name-only": null });
+      const log4 = await this.git.log({ maxCount: maxCount * 50, "--name-only": null });
       const result = /* @__PURE__ */ new Map();
-      for (const entry of log3.all) {
+      for (const entry of log4.all) {
         const record = {
           hash: entry.hash,
           message: entry.message,
@@ -428,10 +448,10 @@ var SimpleGitAdapter = class {
   }
   async getFileChurn(filePath) {
     try {
-      const log3 = await this.git.log({ file: filePath, "--follow": null });
+      const log4 = await this.git.log({ file: filePath, "--follow": null });
       return {
         filePath,
-        commitCount: log3.total
+        commitCount: log4.total
       };
     } catch (err) {
       log2.error(` Failed to get churn for ${filePath}: ${err.message}`);
@@ -440,6 +460,126 @@ var SimpleGitAdapter = class {
   }
 };
 
+// src/adapters/stats/session-recorder-adapter.ts
+var log3 = createLogger("ctxo:stats");
+var SessionRecorderAdapter = class {
+  db;
+  onWrite;
+  tableCreated = false;
+  constructor(db, onWrite) {
+    this.db = db;
+    this.onWrite = onWrite ?? null;
+  }
+  ensureTable() {
+    if (this.tableCreated) return;
+    this.db.run(`
+      CREATE TABLE IF NOT EXISTS session_events (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        timestamp TEXT DEFAULT (datetime('now')),
+        tool TEXT NOT NULL,
+        symbol_id TEXT,
+        detail_level TEXT,
+        response_tokens INTEGER,
+        response_bytes INTEGER,
+        latency_ms REAL,
+        truncated BOOLEAN DEFAULT 0
+      )
+    `);
+    this.db.run("CREATE INDEX IF NOT EXISTS idx_session_timestamp ON session_events(timestamp)");
+    this.db.run("CREATE INDEX IF NOT EXISTS idx_session_tool ON session_events(tool)");
+    this.tableCreated = true;
+  }
+  record(event) {
+    try {
+      this.ensureTable();
+      this.db.run(
+        `INSERT INTO session_events (tool, symbol_id, detail_level, response_tokens, response_bytes, latency_ms, truncated)
+         VALUES (?, ?, ?, ?, ?, ?, ?)`,
+        [
+          event.tool,
+          event.symbolId,
+          event.detailLevel,
+          event.responseTokens,
+          event.responseBytes,
+          event.latencyMs,
+          event.truncated ? 1 : 0
+        ]
+      );
+      this.flushToDisk();
+    } catch (err) {
+      log3.error(`Failed to record session event: ${err.message}`);
+    }
+  }
+  queryStats(days) {
+    this.ensureTable();
+    const whereClause = days != null && days > 0 ? `WHERE timestamp >= datetime('now', '-${Math.floor(days)} days')` : "";
+    const summaryResult = this.db.exec(
+      `SELECT COUNT(*) as total_calls, COALESCE(SUM(response_tokens), 0) as total_tokens
+       FROM session_events ${whereClause}`
+    );
+    const summaryRow = summaryResult[0]?.values[0];
+    const totalCalls = Number(summaryRow?.[0] ?? 0);
+    const totalTokensServed = Number(summaryRow?.[1] ?? 0);
+    const toolsResult = this.db.exec(
+      `SELECT tool, COUNT(*) as calls, CAST(AVG(response_tokens) AS INTEGER) as avg_tokens
+       FROM session_events ${whereClause}
+       GROUP BY tool ORDER BY calls DESC LIMIT 5`
+    );
+    const topTools = (toolsResult[0]?.values ?? []).map((row) => ({
+      tool: String(row[0]),
+      calls: Number(row[1]),
+      avgTokens: Number(row[2])
+    }));
+    const symbolWherePrefix = whereClause ? whereClause + " AND" : "WHERE";
+    const symbolsResult = this.db.exec(
+      `SELECT symbol_id, COUNT(*) as queries
+       FROM session_events ${symbolWherePrefix} symbol_id IS NOT NULL
+       GROUP BY symbol_id ORDER BY queries DESC LIMIT 5`
+    );
+    const topSymbols = (symbolsResult[0]?.values ?? []).map((row) => {
+      const symbolId = String(row[0]);
+      const parts = symbolId.split("::");
+      const name = parts.length >= 2 ? parts[1] : symbolId;
+      return {
+        symbolId,
+        name,
+        queries: Number(row[1])
+      };
+    });
+    const levelResult = this.db.exec(
+      `SELECT detail_level, COUNT(*) as count
+       FROM session_events ${symbolWherePrefix} detail_level IS NOT NULL
+       GROUP BY detail_level ORDER BY detail_level`
+    );
+    const levelRows = levelResult[0]?.values ?? [];
+    const levelTotal = levelRows.reduce((sum, row) => sum + Number(row[1]), 0);
+    const detailLevelDistribution = levelRows.map((row) => ({
+      level: String(row[0]),
+      count: Number(row[1]),
+      percentage: levelTotal > 0 ? Math.round(Number(row[1]) / levelTotal * 100) : 0
+    }));
+    return {
+      totalCalls,
+      totalTokensServed,
+      topTools,
+      topSymbols,
+      detailLevelDistribution
+    };
+  }
+  clear() {
+    this.ensureTable();
+    this.db.run("DELETE FROM session_events");
+    this.flushToDisk();
+  }
+  flushToDisk() {
+    try {
+      this.onWrite?.();
+    } catch (err) {
+      log3.error(`Failed to flush stats to disk: ${err.message}`);
+    }
+  }
+};
+
 // src/core/why-context/revert-detector.ts
 var REVERT_QUOTED_PATTERN = /^Revert "(.+)"$/;
 var REVERT_PREFIX_PATTERN = /^revert:\s*(.+)$/i;
@@ -556,6 +696,7 @@ export {
   RevertDetector,
   SimpleGitAdapter,
   aggregateCoChanges,
-  loadCoChangeMap
+  loadCoChangeMap,
+  SessionRecorderAdapter
 };
-//# sourceMappingURL=chunk-XSHNN6PU.js.map
+//# sourceMappingURL=chunk-WZKXGKKI.js.map

package/dist/chunk-WZKXGKKI.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/logger.ts","../src/adapters/storage/sqlite-storage-adapter.ts","../src/adapters/git/simple-git-adapter.ts","../src/adapters/stats/session-recorder-adapter.ts","../src/core/why-context/revert-detector.ts","../src/core/co-change/co-change-analyzer.ts"],"sourcesContent":["/**\n * Structured logger for Ctxo — all output goes to stderr (stdout reserved for MCP JSON-RPC).\n *\n * Supports debug mode via DEBUG environment variable:\n *   DEBUG=ctxo:*          — all debug output\n *   DEBUG=ctxo:git        — only git adapter debug\n *   DEBUG=ctxo:index      — only indexing debug\n *   DEBUG=ctxo:mcp        — only MCP handler debug\n *   DEBUG=ctxo:storage    — only storage adapter debug\n *   DEBUG=ctxo:masking    — only masking pipeline debug\n *\n * Always outputs: info, warn, error (regardless of DEBUG).\n * Only outputs debug when matching namespace is enabled.\n */\n\nfunction isDebugEnabled(namespace: string): boolean {\n  const debugEnv = process.env['DEBUG'] ?? '';\n  if (!debugEnv) return false;\n  const patterns = debugEnv.split(',').map(p => p.trim());\n  return patterns.some(p => {\n    if (p === '*' || p === 'ctxo:*') return true;\n    if (p === namespace) return true;\n    if (p.endsWith(':*') && namespace.startsWith(p.slice(0, -1))) return true;\n    return false;\n  });\n}\n\nexport interface Logger {\n  debug(message: string, ...args: unknown[]): void;\n  info(message: string, ...args: unknown[]): void;\n  warn(message: string, ...args: unknown[]): void;\n  error(message: string, ...args: unknown[]): void;\n}\n\nexport function createLogger(namespace: string): Logger {\n  const prefix = `[${namespace}]`;\n\n  return {\n    debug(message: string, ...args: unknown[]) {\n      if (isDebugEnabled(namespace)) {\n        console.error(`${prefix} DEBUG ${message}`, ...args);\n      }\n    },\n    info(message: string, ...args: unknown[]) {\n      console.error(`${prefix} ${message}`, ...args);\n    },\n    warn(message: string, ...args: unknown[]) {\n      console.error(`${prefix} WARN ${message}`, ...args);\n    },\n    error(message: string, ...args: unknown[]) {\n      console.error(`${prefix} ERROR ${message}`, ...args);\n    },\n  };\n}\n","import initSqlJs, { type Database } from 'sql.js';\nimport { readFileSync, writeFileSync, existsSync, mkdirSync } from 'node:fs';\nimport { join, dirname } from 'node:path';\nimport type { FileIndex, GraphEdge, SymbolNode } from '../../core/types.js';\nimport type { IStoragePort } from '../../ports/i-storage-port.js';\nimport { JsonIndexReader } from './json-index-reader.js';\nimport { createLogger } from '../../core/logger.js';\n\nconst log = createLogger('ctxo:storage');\n\nexport class SqliteStorageAdapter implements IStoragePort {\n  private db: Database | undefined;\n  private readonly dbPath: string;\n  private readonly ctxoRoot: string;\n\n  constructor(ctxoRoot: string) {\n    this.ctxoRoot = ctxoRoot;\n    this.dbPath = join(ctxoRoot, '.cache', 'symbols.db');\n  }\n\n  async init(): Promise<void> {\n    const SQL = await initSqlJs();\n\n    if (existsSync(this.dbPath)) {\n      try {\n        const buffer = readFileSync(this.dbPath);\n        this.db = new SQL.Database(buffer);\n        this.verifyIntegrity();\n      } catch {\n        log.warn('Corrupt DB detected, rebuilding from JSON index');\n        this.db = new SQL.Database();\n        this.createTables();\n      }\n    } else {\n      this.db = new SQL.Database();\n      this.createTables();\n    }\n\n    // Always rebuild from JSON — it is the source of truth\n    this.rebuildFromJson();\n  }\n\n  async initEmpty(): Promise<void> {\n    const SQL = await initSqlJs();\n    if (existsSync(this.dbPath)) {\n      try {\n        const buffer = readFileSync(this.dbPath);\n        this.db = new SQL.Database(buffer);\n      } catch {\n        this.db = new SQL.Database();\n      }\n    } else {\n      this.db = new SQL.Database();\n    }\n    this.createTables();\n    this.clearIndexTables();\n  }\n\n  /** Returns the underlying sql.js Database instance. Throws if not initialized. */\n  getDb(): Database {\n    if (!this.db) {\n      throw new Error('SqliteStorageAdapter not initialized. Call init() first.');\n    }\n    return this.db;\n  }\n\n  private database(): Database {\n    return this.getDb();\n  }\n\n  private verifyIntegrity(): void {\n    const db = this.database();\n    const result = db.exec('PRAGMA integrity_check');\n    const firstRow = result[0]?.values[0];\n    if (!firstRow || firstRow[0] !== 'ok') {\n      throw new Error('SQLite integrity check failed');\n    }\n\n    const tables = db.exec(\n      \"SELECT name FROM sqlite_master WHERE type='table' AND name IN ('symbols', 'edges', 'files')\",\n    );\n    if (!tables[0] || tables[0].values.length < 3) {\n      throw new Error('Missing required tables');\n    }\n  }\n\n  private createTables(): void {\n    const db = this.database();\n    db.run(`\n      CREATE TABLE IF NOT EXISTS files (\n        file_path TEXT PRIMARY KEY,\n        last_modified INTEGER NOT NULL\n      )\n    `);\n    db.run(`\n      CREATE TABLE IF NOT EXISTS symbols (\n        symbol_id TEXT PRIMARY KEY,\n        name TEXT NOT NULL,\n        kind TEXT NOT NULL,\n        file_path TEXT NOT NULL,\n        start_line INTEGER NOT NULL,\n        end_line INTEGER NOT NULL\n      )\n    `);\n    db.run(`\n      CREATE TABLE IF NOT EXISTS edges (\n        id INTEGER PRIMARY KEY AUTOINCREMENT,\n        from_symbol TEXT NOT NULL,\n        to_symbol TEXT NOT NULL,\n        kind TEXT NOT NULL\n      )\n    `);\n    db.run('CREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_path)');\n    db.run('CREATE INDEX IF NOT EXISTS idx_edges_from ON edges(from_symbol)');\n    db.run('CREATE INDEX IF NOT EXISTS idx_edges_to ON edges(to_symbol)');\n  }\n\n  private clearIndexTables(): void {\n    const db = this.database();\n    db.run('DELETE FROM edges');\n    db.run('DELETE FROM symbols');\n    db.run('DELETE FROM files');\n  }\n\n  private rebuildFromJson(): void {\n    const reader = new JsonIndexReader(this.ctxoRoot);\n    const indices = reader.readAll();\n\n    if (indices.length > 0) {\n      this.bulkWrite(indices);\n    }\n  }\n\n  writeSymbolFile(fileIndex: FileIndex): void {\n    const db = this.database();\n\n    db.run('BEGIN TRANSACTION');\n    try {\n      this.deleteFileData(db, fileIndex.file);\n\n      db.run(\n        'INSERT INTO files (file_path, last_modified) VALUES (?, ?)',\n        [fileIndex.file, fileIndex.lastModified],\n      );\n\n      for (const sym of fileIndex.symbols) {\n        db.run(\n          'INSERT OR REPLACE INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)',\n          [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine],\n        );\n      }\n\n      for (const edge of fileIndex.edges) {\n        db.run(\n          'INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)',\n          [edge.from, edge.to, edge.kind],\n        );\n      }\n\n      db.run('COMMIT');\n      this.persistIfNeeded();\n    } catch (err) {\n      db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  /**\n   * Read symbol file from SQLite cache.\n   * NOTE: SQLite only caches symbols + edges (graph topology).\n   * intent, antiPatterns, and complexity live in committed JSON index only.\n   * Use JsonIndexReader for full FileIndex data.\n   */\n  readSymbolFile(relativePath: string): FileIndex | undefined {\n    const db = this.database();\n\n    const fileResult = db.exec(\n      'SELECT file_path, last_modified FROM files WHERE file_path = ?',\n      [relativePath],\n    );\n    if (!fileResult[0] || fileResult[0].values.length === 0) {\n      return undefined;\n    }\n\n    const [filePath, lastModified] = fileResult[0].values[0] as [string, number];\n\n    const symbols = this.getSymbolsForFile(db, filePath);\n    const edges = this.getEdgesForFile(db, filePath);\n\n    return {\n      file: filePath,\n      lastModified,\n      symbols,\n      edges,\n      // Not stored in SQLite — use JsonIndexReader for these fields\n      intent: [],\n      antiPatterns: [],\n    };\n  }\n\n  listIndexedFiles(): string[] {\n    const db = this.database();\n    const result = db.exec('SELECT file_path FROM files ORDER BY file_path');\n    if (!result[0]) return [];\n    return result[0].values.map((row) => row[0] as string);\n  }\n\n  deleteSymbolFile(relativePath: string): void {\n    const db = this.database();\n    this.deleteFileData(db, relativePath);\n  }\n\n  getSymbolById(symbolId: string): SymbolNode | undefined {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE symbol_id = ?',\n      [symbolId],\n    );\n    if (!result[0] || result[0].values.length === 0) {\n      return undefined;\n    }\n\n    const [sid, name, kind, startLine, endLine] = result[0].values[0] as [string, string, string, number, number];\n    return { symbolId: sid, name, kind: kind as SymbolNode['kind'], startLine, endLine };\n  }\n\n  getEdgesFrom(symbolId: string): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges WHERE from_symbol = ?',\n      [symbolId],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  getEdgesTo(symbolId: string): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges WHERE to_symbol = ?',\n      [symbolId],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  getAllSymbols(): SymbolNode[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols',\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      symbolId: row[0] as string,\n      name: row[1] as string,\n      kind: row[2] as SymbolNode['kind'],\n      startLine: row[3] as number,\n      endLine: row[4] as number,\n    }));\n  }\n\n  getAllEdges(): GraphEdge[] {\n    const db = this.database();\n    const result = db.exec(\n      'SELECT from_symbol, to_symbol, kind FROM edges',\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n\n  bulkWrite(indices: FileIndex[]): void {\n    const db = this.database();\n\n    db.run('BEGIN TRANSACTION');\n    try {\n      for (const fileIndex of indices) {\n        this.deleteFileData(db, fileIndex.file);\n\n        db.run(\n          'INSERT INTO files (file_path, last_modified) VALUES (?, ?)',\n          [fileIndex.file, fileIndex.lastModified],\n        );\n\n        for (const sym of fileIndex.symbols) {\n          db.run(\n            'INSERT OR REPLACE INTO symbols (symbol_id, name, kind, file_path, start_line, end_line) VALUES (?, ?, ?, ?, ?, ?)',\n            [sym.symbolId, sym.name, sym.kind, fileIndex.file, sym.startLine, sym.endLine],\n          );\n        }\n\n        for (const edge of fileIndex.edges) {\n          db.run(\n            'INSERT INTO edges (from_symbol, to_symbol, kind) VALUES (?, ?, ?)',\n            [edge.from, edge.to, edge.kind],\n          );\n        }\n      }\n\n      db.run('COMMIT');\n      this.persistIfNeeded();\n    } catch (err) {\n      db.run('ROLLBACK');\n      throw err;\n    }\n  }\n\n  persist(): void {\n    const db = this.database();\n    const data = db.export();\n    const buffer = Buffer.from(data);\n    mkdirSync(dirname(this.dbPath), { recursive: true });\n    writeFileSync(this.dbPath, buffer);\n  }\n\n  close(): void {\n    if (this.db) {\n      this.persist();\n      this.db.close();\n      this.db = undefined;\n    }\n  }\n\n  private persistIfNeeded(): void {\n    try {\n      this.persist();\n    } catch (err) {\n      log.error(`Failed to persist DB: ${(err as Error).message}`);\n    }\n  }\n\n  private deleteFileData(db: Database, filePath: string): void {\n    // Delete edges originating from this file's symbols\n    const symResult = db.exec(\n      'SELECT symbol_id FROM symbols WHERE file_path = ?',\n      [filePath],\n    );\n    if (symResult[0]) {\n      for (const row of symResult[0].values) {\n        db.run('DELETE FROM edges WHERE from_symbol = ?', [row[0]]);\n      }\n    }\n    db.run('DELETE FROM symbols WHERE file_path = ?', [filePath]);\n    db.run('DELETE FROM files WHERE file_path = ?', [filePath]);\n  }\n\n  private getSymbolsForFile(db: Database, filePath: string): SymbolNode[] {\n    const result = db.exec(\n      'SELECT symbol_id, name, kind, start_line, end_line FROM symbols WHERE file_path = ? ORDER BY start_line',\n      [filePath],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      symbolId: row[0] as string,\n      name: row[1] as string,\n      kind: row[2] as SymbolNode['kind'],\n      startLine: row[3] as number,\n      endLine: row[4] as number,\n    }));\n  }\n\n  private getEdgesForFile(db: Database, filePath: string): GraphEdge[] {\n    const result = db.exec(\n      `SELECT e.from_symbol, e.to_symbol, e.kind FROM edges e\n       INNER JOIN symbols s ON e.from_symbol = s.symbol_id\n       WHERE s.file_path = ?`,\n      [filePath],\n    );\n    if (!result[0]) return [];\n    return result[0].values.map((row) => ({\n      from: row[0] as string,\n      to: row[1] as string,\n      kind: row[2] as GraphEdge['kind'],\n    }));\n  }\n}\n","import { simpleGit, type SimpleGit } from 'simple-git';\nimport type { IGitPort } from '../../ports/i-git-port.js';\nimport type { CommitRecord, ChurnData } from '../../core/types.js';\nimport { createLogger } from '../../core/logger.js';\n\nconst log = createLogger('ctxo:git');\n\nexport class SimpleGitAdapter implements IGitPort {\n  private readonly git: SimpleGit;\n\n  constructor(projectRoot: string) {\n    this.git = simpleGit(projectRoot);\n    log.debug('Initialized with root: %s', projectRoot);\n  }\n\n  async isAvailable(): Promise<boolean> {\n    try {\n      await this.git.version();\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  async getCommitHistory(filePath: string, maxCount?: number): Promise<CommitRecord[]> {\n    try {\n      const log = await this.git.log({\n        file: filePath,\n        '--follow': null,\n        ...(maxCount ? { maxCount } : {}),\n      });\n\n      return log.all.map((entry) => ({\n        hash: entry.hash,\n        message: entry.message,\n        date: entry.date,\n        author: entry.author_name,\n      }));\n    } catch (err) {\n      log.error(` Failed to get history for ${filePath}: ${(err as Error).message}`);\n      return [];\n    }\n  }\n\n  async getBatchHistory(maxCount = 20): Promise<Map<string, CommitRecord[]>> {\n    try {\n      const log = await this.git.log({ maxCount: maxCount * 50, '--name-only': null });\n      const result = new Map<string, CommitRecord[]>();\n\n      for (const entry of log.all) {\n        const record: CommitRecord = {\n          hash: entry.hash,\n          message: entry.message,\n          date: entry.date,\n          author: entry.author_name,\n        };\n\n        const diff = entry.diff;\n        const files: string[] = diff?.files?.map((f: { file: string }) => f.file.replace(/\\\\/g, '/')) ?? 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[]).map((row) => ({\n      tool: String(row[0]),\n      calls: Number(row[1]),\n      avgTokens: Number(row[2]),\n    }));\n\n    // Top symbols (exclude nulls)\n    const symbolWherePrefix = whereClause ? whereClause + ' AND' : 'WHERE';\n    const symbolsResult = this.db.exec(\n      `SELECT symbol_id, COUNT(*) as queries\n       FROM session_events ${symbolWherePrefix} symbol_id IS NOT NULL\n       GROUP BY symbol_id ORDER BY queries DESC LIMIT 5`,\n    );\n    const topSymbols: SymbolStats[] = (symbolsResult[0]?.values ?? []).map((row) => {\n      const symbolId = String(row[0]);\n      const parts = symbolId.split('::');\n      const name = parts.length >= 2 ? parts[1]! : symbolId;\n      return {\n        symbolId,\n        name,\n        queries: Number(row[1]),\n      };\n    });\n\n    // Detail level distribution\n    const levelResult = this.db.exec(\n      `SELECT detail_level, COUNT(*) as count\n       FROM session_events ${symbolWherePrefix} detail_level IS NOT NULL\n       GROUP BY detail_level ORDER BY detail_level`,\n    );\n    const levelRows = levelResult[0]?.values ?? [];\n    const levelTotal = levelRows.reduce((sum, row) => sum + Number(row[1]), 0);\n    const detailLevelDistribution: DetailLevelStats[] = levelRows.map((row) => ({\n      level: String(row[0]),\n      count: Number(row[1]),\n      percentage: levelTotal > 0 ? 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