create-yss-spec 3.3.1 → 3.3.4

package/template/.trae/skills/llm-wiki/assets/fixtures/broken-wiki/wiki/index.md

@@ -1,5 +0,0 @@
-# broken fixture
-
-## 分类
-
-- [[存在的页]]

package/template/.trae/skills/llm-wiki/assets/fixtures/broken-wiki/wiki/log.md

@@ -1 +0,0 @@
-# 操作日志

package/template/.trae/skills/llm-wiki/assets/fixtures/broken-wiki/wiki//345/255/230/345/234/250/347/232/204/351/241/265.md

@@ -1,7 +0,0 @@
-# 存在的页
-
-摘要。引用了 [[不存在的页]]。
-
-## 来源
-
-- fixture

package/template/.trae/skills/llm-wiki/references/compile.md

@@ -1,126 +0,0 @@
-# Compile modes
-
-Manifest schema is the incremental-compile graph. The agent fills `id`, `kind`, `livePath`, `rawPath`, `role`, `extract` (derived only), `articles`. Scripts fill `sha256`, `compiledAt`, `gitCommit`.
-
-## Manifest
-
-Path: `<wiki-root>/.wiki-manifest.json`
-
-```json
-{
-  "schemaVersion": 1,
-  "wikiRoot": "wiki/example",
-  "compiledAt": "ISO-8601",
-  "gitCommit": "hex or empty",
-  "profile": "mixed",
-  "sources": [
-    {
-      "id": "schema.sql",
-      "kind": "document",
-      "livePath": "apps/.../schema.sql",
-      "rawPath": "raw/schema.sql",
-      "sha256": "...",
-      "role": "copy"
-    },
-    {
-      "id": "skills-lock.json",
-      "kind": "derived",
-      "livePath": "skills-lock.json",
-      "rawPath": "raw/skills-lock-names.md",
-      "role": "extract",
-      "extract": { "kind": "skill-names" }
-    }
-  ],
-  "articles": [
-    {
-      "id": "连接器管理",
-      "file": "wiki/连接器管理.md",
-      "sourceIds": ["schema.sql"],
-      "humanOwned": false
-    }
-  ]
-}
-```
-
-`profile`: `mixed` (docs + code), `documents`, `code`.
-
-Source kinds:
-
-| kind | raw | when it drifts |
-|---|---|---|
-| `document` | copy of `livePath` | sync raw, rewrite articles that list this `id` |
-| `derived` | extract from `livePath` | re-run extract, rewrite dependents |
-| `code-surface` | none (`rawPath` null) | rewrite dependents; do not copy source into raw |
-
-`livePath` is repo-relative. `rawPath` is wiki-root-relative. `file` is wiki-root-relative.
-
-Article id = basename of `file` without `.md`. Renames are explicit `LINK` / `RETIRE`, never a silent refresh side effect.
-
-## Derived extracts
-
-Every `kind: derived` source must set `extract.kind` to one of `skill-names`, `heading-list`, or `prose-note`. Refresh and rebuild re-run that recipe into `rawPath`. Do not copy the live file in full.
-
-Shared rules:
-
-1. Input is `livePath` (or the live files the recipe names).
-2. Output is `rawPath` only.
-3. Sort or section order must be stable and documented for that kind.
-4. The extract must be smaller than the live input and must not include secrets, hashes, or lock metadata unless the recipe says those names are the payload.
-5. Replay the same recipe on drift; do not hand-edit raw to "fix" names.
-
-| `extract.kind` | Replay |
-|---|---|
-| `skill-names` | `extract.mjs skill-names --in <livePath> --out <wiki-root>/<rawPath>`. Lists `skills.shared` and `skills.platform` keys, `localeCompare` sorted. No hashes or paths. |
-| `heading-list` | Agent: list headings from the live file in document order, verbatim. No body copy. No script in this skill. |
-| `prose-note` | Agent: short labelled note that cites the live inputs. Stable section order. No full-file copy. No script in this skill. |
-
-## init
-
-Done when the target is a detectable Karpathy wiki and lint exits 0.
-
-1. If `wiki/index.md` already exists: ask refresh vs rebuild. Do not init over it.
-2. Ask: wiki path, corpus roots, coverage, and body language (follow the host project's document-language rule). See [discover.md](discover.md).
-3. Discover corpus with the [discover.md](discover.md) checklist. Do not ingest `docs/` wholesale.
-4. Write raw copies/extracts. Write manifest source list. Run `inventory.mjs hash`.
-5. Write `wiki/CLAUDE.md` from the template, adapted to this corpus — do not hard-code a previous product name.
-6. Write `index.md` categories first, then articles. Categories are index `##` headings.
-7. Orchestrator writes hub pages. Other pages go to subagents with disjoint file lists ([writing.md](writing.md)).
-8. Lint. Sample live-source facts. Append `log.md` `CREATE`.
-
-## refresh
-
-Done when only drift-hit articles change, human-owned pages are untouched, lint exits 0, and log has a structured `REFRESH`.
-
-1. No manifest → stop. Rebuild, or rebuild the manifest from existing「来源」sections. Do not invent `sourceIds`.
-2. `inventory.mjs status` (alias of `drift`) against every `livePath`. Pass each Agent-listed new file as `--candidate <livePath>`. Do not scan the tree. Read the JSON keys `changed`, `missing`, `unchanged`, `articles`, `unmapped`, `humanOwned`. Non-empty `changed` or `missing` is stale. Exit `0` with that JSON is normal, not a failure. Exit `2` is a script error.
-3. Impact set = `articles`. Rewrite those pages except `humanOwned` (wikilinks only).
-4. For `document` / `derived`: update raw first (derived: re-run `extract`), then rewrite hit articles.
-5. Each `unmapped` live path must get one triage: `New` / `Update` / `Disputed` / `No material`. Do not create pages silently. `No material` appends log only.
-6. Deleted sources → mark missing in citing articles; do not delete pages silently.
-7. Unhit articles: zero bytes changed.
-8. Rewrite is not "rewrite the whole wiki and call it refresh".
-9. Lint. Sample facts on hit pages. Append `REFRESH` with machine-readable fields:
-
-```
-## [YYYY-MM-DD] REFRESH | <summary>
-- changed: <sourceId>, ...
-- missing: <sourceId>, ...
-- articles: <articleId>, ...
-- unmapped: <livePath> (New|Update|Disputed|No material)
-```
-
-Omit an empty `changed` / `missing` / `articles` line. Repeat `unmapped` once per candidate. `status` / `drift` never fail just because those arrays are non-empty.
-
-## rebuild
-
-Done when raw matches live, LLM-owned pages are rewritten, stable ids and human-owned pages remain, lint exits 0, and log has `REBUILD`.
-
-1. Rediscover corpus with [discover.md](discover.md). Do not trust the old source list as complete.
-2. Recopy / re-extract raw.
-3. Keep article ids that still earn a page. Retired ids: `RETIRE` in log, drop from index.
-4. `humanOwned: true` (frontmatter or manifest): fix wikilinks only.
-5. Rewrite remaining articles. Rebuild index (categories may evolve).
-6. Replace manifest via `inventory.mjs hash`.
-7. Full lint + sample + `REBUILD`.
-
-rebuild is not `rm -rf wiki`. Stable ids keep old `[[wikilink]]` and external links valid.

package/template/.trae/skills/llm-wiki/references/discover.md

@@ -1,42 +0,0 @@
-# Discover corpus
-
-Discovery is an Agent checklist, not a scanner. Use it for `init` and `rebuild`. Confirm the answers, then write sources. Do not silently ingest every markdown file.
-
-## Ask first
-
-1. Wiki path (`<wiki-root>`).
-2. Corpus roots the user wants covered.
-3. Coverage: `core` (authoritative process / contract files) or `full` (core plus extra docs the user names).
-4. Body language: follow the host project's document-language rule.
-
-If any answer is missing, ask. Do not guess from directory names or Git remotes.
-
-## Default include (core)
-
-Unless the user replaces this list with the host's single source-of-truth table:
-
-- Root authoritative files (for example `README`, `AGENTS`, `CONTEXT`, repository-identity manifest)
-- `docs/adr/`
-- `docs/process/`
-- `docs/agents/`
-- `docs/templates/`
-- Frozen contracts the user names
-
-`full` adds only roots the user listed. It is not "everything under `docs/`".
-
-## Default exclude
-
-- `docs/reviews/`
-- `.template-source/evidence/`
-- `docs/.scratch/`
-- Agent projection directories (copies or symlinks of shared skills)
-- `node_modules`
-- Whole lock files (`package-lock.json`, `pnpm-lock.yaml`, `skills-lock.json` as a document). A lock may appear only as `kind: derived` with an `extract` recipe.
-
-## Threshold
-
-If the candidate `document` count would exceed 40, list the candidates and stop. Do not write `raw/`, articles, or the manifest until the user confirms the list.
-
-## After the list is confirmed
-
-Write raw copies or extracts, then fill manifest `sources` per [compile.md](compile.md). Derived sources need `extract`. Code surfaces are not copies.

package/template/.trae/skills/llm-wiki/references/ingest.md

@@ -1,36 +0,0 @@
-# Ingest
-
-Ingest is a compile mode. It adds a user-named external source or an already-written research note to the wiki. It does not replace `refresh`.
-
-Query must not ingest. Mapped live sources that changed go to `refresh`.
-
-## Allowed inputs
-
-- A URL, paste, or file outside the repo that the user named in this turn.
-- An already-written research note on disk (for example under the host's research archive). One-off fact gathering still belongs to the host's research skill; ingest only compiles a note that already exists.
-
-Forbidden inputs: `docs/reviews/`, `docs/.scratch/`, agent projection directories, lock files as documents, and any live authoritative file that is already a manifest `livePath`.
-
-Do not treat a web search as this skill's `refresh`. Confirm new web material as a named input first.
-
-## Done when
-
-`raw/` has the copy or labelled extract, the manifest lists the source, triage is recorded, confirmed pages are written (or none if the user declined), structural lint exits 0, advise has been run, and `log.md` has `INGEST`.
-
-## Steps
-
-1. Detect the wiki. No `wiki/index.md` → suggest `init`. Stop.
-2. If the path is already a manifest `livePath` → stop and use `refresh`.
-3. Write `raw/` as a copy or a labelled extract. Do not invent `extract.kind` values. Do not edit live authoritative files.
-4. Add a manifest source (`kind: document` or `derived`) with `livePath` (repo-relative when the file is in-repo; otherwise leave a labelled extract and record the origin in the extract header). Do not create a second config file (`inbox.md`, YAML sidecars). The pending queue is the new source plus the log.
-5. Run `inventory.mjs status --wiki <wiki-root> --candidate <livePath>` if the input is in-repo. Assign each unmapped path or new source one triage: `New` / `Update` / `Disputed` / `No material`.
-6. Show the candidate article list. **Stop until the user confirms.** Unconfirmed ingest changes zero article bytes. `No material` writes log only.
-7. After confirmation: write or update only the confirmed pages. Use `## Status` when triage is `Disputed`. Follow [writing.md](writing.md).
-8. `inventory.mjs hash`. Structural lint. Advise (report counts). Sample live/raw facts on changed pages. Append:
-
-```
-## [YYYY-MM-DD] INGEST | <summary>
-- source: <sourceId>
-- disposition: New|Update|Disputed|No material
-- articles: <articleId>, ...
-```

package/template/.trae/skills/llm-wiki/references/lint.md

@@ -1,54 +0,0 @@
-# Lint
-
-From the repo root, run this skill's scripts (resolve `<skill-root>` from the directory that contains `SKILL.md`):
-
-```bash
-node <skill-root>/scripts/lint-wikilinks.mjs <wiki-root>
-node <skill-root>/scripts/advise.mjs <wiki-root>
-```
-
-`lint-wikilinks.mjs` exit 0 only when every structural check below passes. `advise.mjs` always prints JSON and exits `0` when the report is valid (exit `2` is a script error). Advise never fails lint and never auto-fixes.
-
-## Script checks
-
-- Every `[[target]]` in articles and `index.md` resolves to `wiki/target.md` (infrastructure filenames are not valid article targets). Cross-path targets such as `[[../other]]` fail; they are not ignored.
-- Every article H1 equals the article id (filename without `.md`).
-- Every `[[wikilink]]` in `index.md` exists on disk.
-- Every article file appears in `index.md`. Orphans fail.
-- Every article has a `## 来源` heading.
-- Infrastructure files are not articles: `index.md`, `log.md`, `CLAUDE.md`, `AGENTS.md`, `soul.md`, `concept-table.md`.
-- Missing `## Status` is not a failure.
-- If `.wiki-manifest.json` exists:
-  - each `articles[].file` exists; each `sources[].livePath` exists when set; `sha256` mismatch is stale (fail)
-  - every non-infrastructure `wiki/*.md` appears in `articles[]`
-  - each `articles[].id` equals the basename of `file` without `.md`
-  - each `sourceIds[]` exists in `sources[].id`
-  - `profile === "documents"` forbids `kind: code-surface`
-  - `kind: document|derived` requires a `rawPath` whose file exists; `code-surface` requires `rawPath == null`
-  - `kind: derived` requires `extract.kind` in `skill-names` | `heading-list` | `prose-note`
-
-`STALE HASH` during lint means the wiki is being claimed healthy while live files drifted. That is separate from `inventory.mjs status`, which reports the same drift with exit `0`.
-
-## Advise (do not repair)
-
-After the structural script, run `advise.mjs` and report the counts. JSON keys:
-
-- `oneWayLinks`: article A → B and B has no link back to A. `index.md` links do not count as backlinks.
-- `missingTermPages`: backtick identifiers, `**bold**` phrases, or `##` headings that appear at least twice and are not an article id.
-- `unreferencedRaws`: manifest `rawPath` values not cited in any article `## 来源`.
-- `suspects`: high-signal literals (number+suffix such as `42K`, ISO dates, quoted strings of length ≥ 12) in the article body that do not appear in the cited live/raw files.
-
-Do not create pages. Do not rewrite numbers. Do not promote `suspects` to lint exit 1.
-
-## Agent checks (after scripts)
-
-From changed pages, sample `N = min(5, changed page count)` claims against **live** files, not against the wiki text just written.
-
-Look for: enum members, HTTP statuses, "persisted vs in-memory", hardcoded vs configured values, freeze coverage vs extra controllers. Advise cannot replace this pass.
-
-## Repair
-
-- Broken wikilink: add the page, retarget, or remove the link. Do not leave dangling `[[...]]`.
-- Stale hash: run refresh on that source, or `inventory.mjs hash` after a deliberate raw sync.
-- Missing manifest on an otherwise valid wiki: reconstruct from「来源」or rebuild. Do not invent mappings.
-- Advise findings: report only, unless the user asked to act on a specific item.

package/template/.trae/skills/llm-wiki/references/query.md

@@ -1,21 +0,0 @@
-# Query
-
-Query is not a compile mode. It reads the wiki; it does not write `raw/`, articles, `index.md`, `log.md`, or `.wiki-manifest.json`.
-
-Use this algorithm when the user asks a repository question and a wiki exists, or asks to answer from the wiki. Do not open the whole corpus, and do not treat wiki prose as live fact.
-
-## Steps
-
-1. **Detect.** If `wiki/index.md` is absent, say the question is outside query: no wiki exists. Suggest `init`. Stop.
-
-2. **Freshness.** If `.wiki-manifest.json` exists, run `inventory.mjs status --wiki <wiki-root>` (same JSON as `drift`). Read `changed`, `missing`, `unchanged`, `articles`, `unmapped`, `humanOwned`. Exit `0` is a valid report, not a failure. Exit `2` is a script error. Show that source-status table. Non-empty `changed` or `missing` means stale: name those sources, ask whether to `refresh`, and do not present drifted pages as current fact. If the user still wants an answer, mark every claim that depends on a drifted source as stale.
-
-3. **Select pages.** First match proper nouns and distinctive terms against `index.md` category headings (`##`) and `[[wikilink]]` targets. If that set is empty or clearly too narrow for the question, search H1 and the first paragraph of each non-infrastructure `wiki/*.md` with the question's distinctive terms and obvious synonyms (`rg` is enough; do not build an index). Open at most `N = min(8, hit count)` articles. Do not open the whole wiki. Do not answer from one summary paragraph when more hit pages exist.
-
-4. **Verify claims.** For each assertion, re-read the live paths in that page's `## 来源` (repo-relative live files, not the wiki sentence). If wiki text conflicts with live, cite live and record wiki drift. Do not rewrite the wiki during query. Do not ingest.
-
-5. **Zero hits.** Only after **both** the index/`[[wikilink]]` pass and the H1/summary search are empty may you say the wiki does not cover the question. List the index categories considered and the search terms used. Do not invent article ids, pages, or facts.
-
-## Done when
-
-The answer cites the pages actually opened and the live sources actually re-read, or it states non-coverage. Query never completes via lint, `CREATE`, `REFRESH`, `REBUILD`, or `INGEST`.

package/template/.trae/skills/llm-wiki/references/schema.md

@@ -1,45 +0,0 @@
-# Wiki schema
-
-Karpathy three-layer wiki. Detectable by `index.md`, `[[wikilink]]`, optional `raw/`, and `CLAUDE.md` or `AGENTS.md`.
-
-## Layers
-
-- **raw/** — immutable sources. The agent reads them; it does not edit them to "fix" facts. Wrong facts are fixed by recompiling the wiki from live paths. Allowed contents: copies of documents, and derived extracts that name their live inputs and an `extract` recipe (see [compile.md](compile.md)).
-- **wiki/** — LLM-owned markdown. Humans read; the agent writes. Article id = filename without `.md`, globally unique. Infrastructure files are not articles: `index.md`, `log.md`, `CLAUDE.md`, `AGENTS.md`, `soul.md`, `concept-table.md`.
-- **schema** — `wiki/CLAUDE.md` (this repo also accepts `AGENTS.md`). Conventions for ingest, refresh, rebuild, and lint. Co-evolve it with the domain; start from `assets/CLAUDE.md.template`.
-- **.wiki-manifest.json** — compile graph, sibling of `raw/` and `wiki/`. Not an article. Not a raw source.
-
-## index.md
-
-`##` headings are categories (taxonomy). Listed `[[wikilink]]` assign articles to categories. Categories come from index headings, not filename prefixes.
-
-## log.md
-
-Append-only. Format: `## [YYYY-MM-DD] OPERATION | 描述`
-
-Operations: `CREATE` `UPDATE` `LINK` `FIX` `REFRESH` `REBUILD` `RETIRE` `LINT` `INGEST`.
-
-## concept-table.md
-
-Optional. Infrastructure, same class as `index.md`. A table of concept, relationship, and article id. Rebuild may rewrite it. Do not move articles into `wiki/entities/`.
-
-## Articles
-
-1. `# H1` then a one-paragraph summary (parsers use this as summary).
-2. Body uses `[[ArticleId]]`. Target must be a wiki article filename without `.md`.
-3. Every claim traces to `raw/` or a live code path. End with a `## 来源` section.
-4. Optional YAML frontmatter: `human-owned: true` — refresh/rebuild must not rewrite the body; they may fix wikilinks only.
-5. Optional `## Status` when multiple `sourceIds` disagree, or live disagrees with old raw:
-
-```markdown
-## Status
-- kind: Disputed | Outdated
-- sources: <sourceId>, <sourceId>
-- note: one-line conflict
-```
-
-Do not write Status when a single live source is correct. Refresh that finds a conflict keeps both citations and the Status block; it must not silently overwrite with the newest live text and pretend there was no conflict. `human-owned` pages do not get a Status rewrite. Status is not an article id and is not an index category. Missing Status is not a lint failure.
-
-## Language
-
-Body language follows the host project's document-language rule. Keep identifiers, enums, table names, API paths, and filenames verbatim.

package/template/.trae/skills/llm-wiki/references/writing.md

@@ -1,35 +0,0 @@
-# Writing
-
-## Page shape
-
-- `# H1` immediately followed by a summary paragraph.
-- `[[ArticleId]]` only; no relative `[[../other-wiki]]` inside a Karpathy wiki (cross-wiki use markdown links).
-- Close with `## 来源` listing raw files and live code paths actually read.
-- Optional `## Status` only when cited sources conflict or live disagrees with old raw. See [schema.md](schema.md). Missing Status is not a defect.
-- Do not invent enum values, table names, or endpoints. If unread, write「见源码」.
-
-## Fact order
-
-1. Called implementation (application service, domain method, mapper SQL).
-2. Table comments / OpenAPI / config defaults.
-3. Stale raw copies.
-
-A column default is not proof the runtime uses it. A freeze OpenAPI is not the full controller surface.
-
-## Coverage
-
-Core pages: deep (state machines, HTTP semantics, transactions). Extension pages: overview (models, enums, tables, links). Match the user's coverage choice from init.
-
-## Subagents
-
-When 2+ article groups have no shared files:
-
-- Each prompt lists exact write paths. Those agents must not touch `index.md`, `log.md`, `.wiki-manifest.json`, or `CLAUDE.md`.
-- Return: paths written + wikilink count per file.
-- Orchestrator merges, lints, samples facts, appends log.
-
-When article groups share no files, dispatch parallel subagents with disjoint write scopes.
-
-## Human-owned
-
-Frontmatter `human-owned: true` or manifest `humanOwned: true`. Refresh/rebuild leave the body; they may repair `[[wikilink]]` targets only. Do not add or rewrite `## Status` on these pages.

package/template/.trae/skills/llm-wiki/scripts/advise.mjs

@@ -1,196 +0,0 @@
-#!/usr/bin/env node
-import { readFile, readdir } from "node:fs/promises";
-import path from "node:path";
-import { fileURLToPath } from "node:url";
-import { exists } from "./inventory.mjs";
-import { articlesDir, extractLinks, INFRA } from "./lint-wikilinks.mjs";
-
-const SOURCE_HEADING_RE = /^##\s+来源\s*$/m;
-const H1_RE = /^#\s+(.+?)\s*$/m;
-const NUMBER_RE = /\b\d+(?:\.\d+)?[A-Za-z%]+\b/g;
-const ISO_DATE_RE = /\b\d{4}-\d{2}-\d{2}\b/g;
-const LONG_QUOTE_RE = /[“"]([^”"]{12,})[”"]/g;
-const BACKTICK_RE = /`([^`\n]{2,64})`/g;
-const BOLD_RE = /\*\*([^*]{2,32})\*\*/g;
-const HEADING_RE = /^#{2,6}\s+(.+)$/gm;
-
-export function sourceSection(text) {
-  const match = text.match(SOURCE_HEADING_RE);
-  if (!match) return "";
-  return text.slice(match.index + match[0].length);
-}
-
-export function firstParagraph(text) {
-  const afterH1 = text.replace(/^---[\s\S]*?---\s*/, "").replace(H1_RE, "").trimStart();
-  const block = afterH1.split(/\n\s*\n/)[0] || "";
-  return block.trim();
-}
-
-export function articleBody(text) {
-  const source = text.search(SOURCE_HEADING_RE);
-  const head = source === -1 ? text : text.slice(0, source);
-  return head.replace(/^---[\s\S]*?---\s*/, "");
-}
-
-export function highSignalLiterals(text) {
-  const found = new Set();
-  for (const match of text.matchAll(NUMBER_RE)) found.add(match[0]);
-  for (const match of text.matchAll(ISO_DATE_RE)) found.add(match[0]);
-  for (const match of text.matchAll(LONG_QUOTE_RE)) found.add(match[1]);
-  return [...found];
-}
-
-function addTerm(counter, term) {
-  const value = term.trim();
-  if (!value) return;
-  counter.set(value, (counter.get(value) || 0) + 1);
-}
-
-export function collectTerms(text) {
-  const body = articleBody(text);
-  const counter = new Map();
-  for (const match of body.matchAll(BACKTICK_RE)) addTerm(counter, match[1]);
-  for (const match of body.matchAll(BOLD_RE)) addTerm(counter, match[1]);
-  for (const match of body.matchAll(HEADING_RE)) addTerm(counter, match[1]);
-  return counter;
-}
-
-export async function loadArticles(wikiRoot) {
-  const dir = articlesDir(wikiRoot);
-  const names = (await readdir(dir)).filter((name) => name.endsWith(".md"));
-  const files = names.filter((name) => !INFRA.has(name.toLowerCase()));
-  const articles = [];
-  for (const file of files) {
-    const text = await readFile(path.join(dir, file), "utf8");
-    articles.push({
-      id: file.slice(0, -3),
-      file,
-      text,
-      links: extractLinks(text).ids,
-    });
-  }
-  return articles;
-}
-
-export function oneWayLinks(articles) {
-  const inbound = new Map();
-  for (const article of articles) inbound.set(article.id, new Set());
-  for (const article of articles) {
-    for (const target of article.links) {
-      if (!inbound.has(target)) continue;
-      inbound.get(target).add(article.id);
-    }
-  }
-  const findings = [];
-  for (const article of articles) {
-    for (const target of new Set(article.links)) {
-      if (target === article.id) continue;
-      if (!inbound.has(target)) continue;
-      if (inbound.get(article.id).has(target)) continue;
-      findings.push({ from: article.id, to: target });
-    }
-  }
-  return findings;
-}
-
-export function missingTermPages(articles) {
-  const ids = new Set(articles.map((article) => article.id));
-  const counts = new Map();
-  for (const article of articles) {
-    const local = collectTerms(article.text);
-    for (const [term, count] of local) {
-      if (ids.has(term)) continue;
-      counts.set(term, (counts.get(term) || 0) + count);
-    }
-  }
-  return [...counts.entries()]
-    .filter(([, count]) => count >= 2)
-    .map(([term, count]) => ({ term, count }))
-    .sort((a, b) => b.count - a.count || a.term.localeCompare(b.term));
-}
-
-export function unreferencedRaws(manifest, articles) {
-  const cited = articles.map((article) => sourceSection(article.text)).join("\n");
-  const findings = [];
-  for (const source of manifest.sources || []) {
-    if (!source.rawPath) continue;
-    if (cited.includes(source.rawPath) || cited.includes(source.id)) continue;
-    findings.push({ id: source.id, rawPath: source.rawPath });
-  }
-  return findings;
-}
-
-async function citedCorpus({ wikiRoot, repoRoot, article, manifest }) {
-  const cited = sourceSection(article.text);
-  const chunks = [cited];
-  for (const source of manifest.sources || []) {
-    const mentioned =
-      (source.rawPath && cited.includes(source.rawPath)) ||
-      (source.id && cited.includes(source.id)) ||
-      (source.livePath && cited.includes(source.livePath));
-    if (!mentioned) continue;
-    if (source.rawPath) {
-      const raw = path.resolve(wikiRoot, source.rawPath);
-      if (await exists(raw)) chunks.push(await readFile(raw, "utf8"));
-    }
-    if (source.livePath) {
-      const live = path.resolve(repoRoot, source.livePath);
-      if (await exists(live)) chunks.push(await readFile(live, "utf8"));
-    }
-  }
-  return chunks.join("\n");
-}
-
-export async function evidenceSuspects({ wikiRoot, repoRoot, articles, manifest }) {
-  const findings = [];
-  for (const article of articles) {
-    const literals = highSignalLiterals(articleBody(article.text));
-    if (!literals.length) continue;
-    const corpus = await citedCorpus({ wikiRoot, repoRoot, article, manifest });
-    for (const value of literals) {
-      if (!corpus.includes(value)) {
-        findings.push({ article: article.id, value });
-      }
-    }
-  }
-  return findings;
-}
-
-export async function adviseWiki(wikiRoot, { repoRoot = process.cwd() } = {}) {
-  const articles = await loadArticles(wikiRoot);
-  const manifestFile = path.join(wikiRoot, ".wiki-manifest.json");
-  const manifest = (await exists(manifestFile))
-    ? JSON.parse(await readFile(manifestFile, "utf8"))
-    : { sources: [] };
-  return {
-    oneWayLinks: oneWayLinks(articles),
-    missingTermPages: missingTermPages(articles),
-    unreferencedRaws: unreferencedRaws(manifest, articles),
-    suspects: await evidenceSuspects({ wikiRoot, repoRoot, articles, manifest }),
-  };
-}
-
-function parseArgs(argv) {
-  const args = { wiki: null, repo: process.cwd() };
-  for (let i = 0; i < argv.length; i += 1) {
-    if (argv[i] === "--repo") args.repo = argv[++i];
-    else if (argv[i] === "--wiki") args.wiki = argv[++i];
-    else if (!args.wiki && !argv[i].startsWith("-")) args.wiki = argv[i];
-  }
-  return args;
-}
-
-async function main(argv = process.argv.slice(2)) {
-  const args = parseArgs(argv);
-  if (!args.wiki) throw new Error("usage: advise.mjs <wiki-root> [--repo <repo-root>]");
-  const wikiRoot = path.resolve(args.repo, args.wiki);
-  const report = await adviseWiki(wikiRoot, { repoRoot: path.resolve(args.repo) });
-  process.stdout.write(`${JSON.stringify(report, null, 2)}\n`);
-}
-
-if (process.argv[1] === fileURLToPath(import.meta.url)) {
-  main().catch((error) => {
-    process.stderr.write(`${error.message}\n`);
-    process.exitCode = 2;
-  });
-}