create-harness-vibe-coding 0.8.6 → 0.8.7

package/templates/common/scripts/wf-remove.mjs

@@ -1,64 +1,64 @@
-#!/usr/bin/env node
-/**
- * wf-remove.mjs �?Safely remove Harness framework files.
- *
- * Classifies all Harness-owned files into:
- *   SAFE     �?framework files matching stored checksums �?auto-remove
- *   MODIFIED �?framework files edited by user �?MUST confirm
- *   USER     �?user data files �?NEVER remove
- *
- * Usage:
- *   node Harness/scripts/wf-remove.mjs                    # dry-run: show plan
- *   node Harness/scripts/wf-remove.mjs --apply            # apply SAFE, prompt for MODIFIED
+#!/usr/bin/env node
+/**
+ * wf-remove.mjs �?Safely remove Harness framework files.
+ *
+ * Classifies all Harness-owned files into:
+ *   SAFE     �?framework files matching stored checksums �?auto-remove
+ *   MODIFIED �?framework files edited by user �?MUST confirm
+ *   USER     �?user data files �?NEVER remove
+ *
+ * Usage:
+ *   node Harness/scripts/wf-remove.mjs                    # dry-run: show plan
+ *   node Harness/scripts/wf-remove.mjs --apply            # apply SAFE, prompt for MODIFIED
  *   node Harness/scripts/wf-remove.mjs --yes              # auto-yes for SAFE only (non-interactive)
  *   node Harness/scripts/wf-remove.mjs --json             # JSON plan for AI consumption
  *   node Harness/scripts/wf-remove.mjs --apply --yes      # auto-apply SAFE, skip MODIFIED, report
  *   node Harness/scripts/wf-remove.mjs --apply --yes --purge-user-data --keep-tasks
  *                                                         # remove Harness project facts, keep task records
  */
-
-import { readFileSync, writeFileSync, existsSync, unlinkSync, rmdirSync, readdirSync, lstatSync } from 'fs';
-import { createHash } from 'crypto';
-import { resolve, dirname, join, sep } from 'path';
-import { fileURLToPath } from 'url';
-import { createInterface } from 'readline';
-
+
+import { readFileSync, writeFileSync, existsSync, unlinkSync, rmdirSync, readdirSync, lstatSync } from 'fs';
+import { createHash } from 'crypto';
+import { resolve, dirname, join, sep } from 'path';
+import { fileURLToPath } from 'url';
+import { createInterface } from 'readline';
+
 const SCRIPT_FILE = fileURLToPath(import.meta.url);
 const __dirname = dirname(SCRIPT_FILE);
 const SCRIPT_ROOT = resolve(__dirname, '..', '..');
-const ROOT = process.env.WF_ROOT
-  ? resolve(process.env.WF_ROOT)
-  : SCRIPT_ROOT;
-const VERSION_FILE = resolve(ROOT, 'Harness', '.harness-version');
-
-// ── Classification ─────────────────────────────────────────────────
-
-/** Path prefixes that Harness framework is allowed to own. ANY file outside these is NEVER removed. */
+const ROOT = process.env.WF_ROOT
+  ? resolve(process.env.WF_ROOT)
+  : SCRIPT_ROOT;
+const VERSION_FILE = resolve(ROOT, 'Harness', '.harness-version');
+
+// ── Classification ─────────────────────────────────────────────────
+
+/** Path prefixes that Harness framework is allowed to own. ANY file outside these is NEVER removed. */
 const HARNESS_PREFIXES = [
   '.claude/',
   '.agents/',
   '.codex/',
   'Harness/',
-  'CLAUDE.md',
-  'AGENTS.md',
-  'MEMORY.md',
-  'tests/.gitkeep',
-];
-
-/** Files the user owns �?NEVER remove. Consistent with wf-update-check PRESERVE_PATTERNS. */
+  'CLAUDE.md',
+  'AGENTS.md',
+  'MEMORY.md',
+  'tests/.gitkeep',
+];
+
+/** Files the user owns �?NEVER remove. Consistent with wf-update-check PRESERVE_PATTERNS. */
 const USER_DATA_PATTERNS = [
   /^Harness\/PROGRESS\.md$/,
   /^Harness\/tasks\//,
   /^Harness\/memory\//,
-  /^Harness\/research\/PRD\.md$/,
-  /^Harness\/research\/research-results\.md$/,
-  /^Harness\/architecture\.md$/,
-  /^Harness\/workflows\//,
-  /^Harness\/features\//,
-  /^Harness\/domain\//,
-  /^README\.md$/,
-  /^\.gitignore$/,
-  /^package\.json$/,
+  /^Harness\/research\/PRD\.md$/,
+  /^Harness\/research\/research-results\.md$/,
+  /^Harness\/architecture\.md$/,
+  /^Harness\/workflows\//,
+  /^Harness\/features\//,
+  /^Harness\/domain\//,
+  /^README\.md$/,
+  /^\.gitignore$/,
+  /^package\.json$/,
   /^package-lock\.json$/,
 ];
 
@@ -114,6 +114,7 @@ const BUILT_IN_AGENT_NAMES = [
   'implementer',
   'memory-master',
   'planner',
+  'reflector',
   'researcher',
   'review-manager',
   'reviewer',
@@ -158,16 +159,16 @@ function isKnownFrameworkFile(file) {
 
 /** Directories to clean up if empty after file removal. */
 const CLEANUP_DIRS = [
-  '.claude/agents',
+  '.claude/agents',
   '.claude/skills/wf-auto',
   '.claude/skills/wf-browser',
   '.claude/skills/tdd',
   '.claude/skills/wf',
   '.claude/skills/wf-learn',
-  '.claude/skills/wf-max',
-  '.claude/skills/wf-readme',
-  '.claude/skills/wf-review',
-  '.claude/skills/wf-update',
+  '.claude/skills/wf-max',
+  '.claude/skills/wf-readme',
+  '.claude/skills/wf-review',
+  '.claude/skills/wf-update',
   '.claude/skills/wf-remove',
   '.claude/skills/subagent-orchestrator',
   '.agents/skills/wf-auto',
@@ -185,33 +186,33 @@ const CLEANUP_DIRS = [
   '.agents',
   '.codex',
   '.claude/rules/ecc',
-  '.claude/rules',
-  'Harness/scripts',
-  'Harness/research',
-  'Harness/workflows',
-  'Harness/domain',
-  'Harness/features',
-  'Harness/memory',
-  'Harness/tasks/_template',
-  'Harness/tasks/auto',
-  'Harness/tasks',
-  'Harness',
-];
-
-// ── Helpers ────────────────────────────────────────────────────────
-
-/** Reject paths that escape ROOT (traversal, absolute, .., etc.). Sync with wf-update-check. */
-function safePath(file) {
-  let normalized = file.replace(/\\/g, '/').replace(/^\/+/, '');
-  if (normalized.includes('//')) return null;  // double slash bypass
-  if (normalized.split('/').some(p => p === '..')) return null;
-  if (file.startsWith('/') || file.startsWith('\\')) return null;
-  if (normalized === '.' || normalized === '') return null;
-  const resolved = resolve(ROOT, normalized);
-  if (!resolved.startsWith(ROOT + sep) && resolved !== ROOT) return null;
-  return resolved;
-}
-
+  '.claude/rules',
+  'Harness/scripts',
+  'Harness/research',
+  'Harness/workflows',
+  'Harness/domain',
+  'Harness/features',
+  'Harness/memory',
+  'Harness/tasks/_template',
+  'Harness/tasks/auto',
+  'Harness/tasks',
+  'Harness',
+];
+
+// ── Helpers ────────────────────────────────────────────────────────
+
+/** Reject paths that escape ROOT (traversal, absolute, .., etc.). Sync with wf-update-check. */
+function safePath(file) {
+  let normalized = file.replace(/\\/g, '/').replace(/^\/+/, '');
+  if (normalized.includes('//')) return null;  // double slash bypass
+  if (normalized.split('/').some(p => p === '..')) return null;
+  if (file.startsWith('/') || file.startsWith('\\')) return null;
+  if (normalized === '.' || normalized === '') return null;
+  const resolved = resolve(ROOT, normalized);
+  if (!resolved.startsWith(ROOT + sep) && resolved !== ROOT) return null;
+  return resolved;
+}
+
 function sha256File(path) {
   if (!existsSync(path)) return null;
   let content = readFileSync(path, 'utf-8');
@@ -288,34 +289,34 @@ function removePlannedFile(file) {
 
 function removeEmptyDirs(startDir) {
   if (!existsSync(startDir)) return;
-  try {
-    const entries = readdirSync(startDir);
-    for (const e of entries) {
-      const full = join(startDir, e);
-      if (lstatSync(full).isDirectory() && !lstatSync(full).isSymbolicLink()) removeEmptyDirs(full);
-    }
-    // After recursing, check if dir is now empty
-    const remaining = readdirSync(startDir);
-    if (remaining.length === 0) {
-      rmdirSync(startDir);
-    }
-  } catch (_) { /* permissions or already gone */ }
-}
-
-async function askUser(question) {
-  if (!process.stdin.isTTY) {
-    console.log('   (non-interactive �?defaulting to KEEP)');
-    return 'k';
-  }
-  const rl = createInterface({ input: process.stdin, output: process.stdout });
-  return new Promise(resolve => {
-    rl.question(question, answer => { rl.close(); resolve(answer.trim().toLowerCase()); });
-  });
-}
-
-// ── Main ───────────────────────────────────────────────────────────
-
-async function main() {
+  try {
+    const entries = readdirSync(startDir);
+    for (const e of entries) {
+      const full = join(startDir, e);
+      if (lstatSync(full).isDirectory() && !lstatSync(full).isSymbolicLink()) removeEmptyDirs(full);
+    }
+    // After recursing, check if dir is now empty
+    const remaining = readdirSync(startDir);
+    if (remaining.length === 0) {
+      rmdirSync(startDir);
+    }
+  } catch (_) { /* permissions or already gone */ }
+}
+
+async function askUser(question) {
+  if (!process.stdin.isTTY) {
+    console.log('   (non-interactive �?defaulting to KEEP)');
+    return 'k';
+  }
+  const rl = createInterface({ input: process.stdin, output: process.stdout });
+  return new Promise(resolve => {
+    rl.question(question, answer => { rl.close(); resolve(answer.trim().toLowerCase()); });
+  });
+}
+
+// ── Main ───────────────────────────────────────────────────────────
+
+async function main() {
   const args = process.argv.slice(2);
   const apply = args.includes('--apply');
   const yes = args.includes('--yes');
@@ -323,13 +324,13 @@ async function main() {
   const purgeUserData = args.includes('--purge-user-data') || args.includes('--purge');
   const keepTasks = args.includes('--keep-tasks');
   const deleteModified = new Set(parseRepeatedFlag(args, '--delete-modified'));
-
-  // 1. Build file inventory
-  const localVersion = existsSync(VERSION_FILE)
-    ? JSON.parse(readFileSync(VERSION_FILE, 'utf-8'))
-    : { checksums: {} };
-  const storedChecksums = localVersion.checksums || {};
-
+
+  // 1. Build file inventory
+  const localVersion = existsSync(VERSION_FILE)
+    ? JSON.parse(readFileSync(VERSION_FILE, 'utf-8'))
+    : { checksums: {} };
+  const storedChecksums = localVersion.checksums || {};
+
   // All files from checksums + known framework patterns
   const allFiles = new Set(Object.keys(storedChecksums));
   const scanIssues = [];
@@ -352,7 +353,7 @@ async function main() {
   ]) {
     addFilesUnder(allFiles, dir, scanIssues);
   }
-
+
   // Add framework files that might not be in checksums (newer additions)
   const extraPatterns = [
     ...KNOWN_FRAMEWORK_FILES,
@@ -372,27 +373,27 @@ async function main() {
     'Harness/scripts/wf-update-check.mjs',
     'Harness/scripts/wf-remove.mjs',
   ];
-  for (const f of extraPatterns) {
-    if (existsSync(resolve(ROOT, f))) allFiles.add(f);
-  }
-
-  // 2. Classify every file
-  const safe = [];     // SAFE �?matches checksum, auto-remove
-  const modified = []; // MODIFIED �?user edited, must confirm
-  const user = [];     // USER �?never remove
+  for (const f of extraPatterns) {
+    if (existsSync(resolve(ROOT, f))) allFiles.add(f);
+  }
+
+  // 2. Classify every file
+  const safe = [];     // SAFE �?matches checksum, auto-remove
+  const modified = []; // MODIFIED �?user edited, must confirm
+  const user = [];     // USER �?never remove
   const skipped = [];  // File not on disk, traversal rejected, or framework-keep
   const purge = [];    // Explicitly requested Harness user-data removal
   skipped.push(...scanIssues);
-
-  for (const file of [...allFiles].sort()) {
-    // Canonical normalization for classification
-    const canonical = file.replace(/\\/g, '/').replace(/\/+/g, '/');
-
-    if (KEEP_FRAMEWORK.has(canonical)) {
-      skipped.push({ file, reason: 'framework keep' });
-      continue;
-    }
-
+
+  for (const file of [...allFiles].sort()) {
+    // Canonical normalization for classification
+    const canonical = file.replace(/\\/g, '/').replace(/\/+/g, '/');
+
+    if (KEEP_FRAMEWORK.has(canonical)) {
+      skipped.push({ file, reason: 'framework keep' });
+      continue;
+    }
+
     if (isUserData(canonical)) {
       if (purgeUserData && isPurgeableHarnessData(canonical, { keepTasks })) {
         purge.push({
@@ -401,25 +402,25 @@ async function main() {
         });
         continue;
       }
-      user.push({ file, reason: 'user data �?NEVER removed' });
-      continue;
-    }
-
-    // Only allow deletion of files under harness-owned prefixes
-    if (!isHarnessOwned(canonical)) {
-      user.push({ file, reason: 'outside harness prefix �?NEVER removed' });
-      continue;
-    }
-
-    const diskPath = safePath(file);
-    if (!diskPath) {
-      skipped.push({ file, reason: 'path traversal rejected' });
-      continue;
-    }
-    if (!existsSync(diskPath)) {
-      skipped.push({ file, reason: 'not on disk' });
-      continue;
-    }
+      user.push({ file, reason: 'user data �?NEVER removed' });
+      continue;
+    }
+
+    // Only allow deletion of files under harness-owned prefixes
+    if (!isHarnessOwned(canonical)) {
+      user.push({ file, reason: 'outside harness prefix �?NEVER removed' });
+      continue;
+    }
+
+    const diskPath = safePath(file);
+    if (!diskPath) {
+      skipped.push({ file, reason: 'path traversal rejected' });
+      continue;
+    }
+    if (!existsSync(diskPath)) {
+      skipped.push({ file, reason: 'not on disk' });
+      continue;
+    }
 
     const currentHash = sha256File(diskPath);
     const storedHash = storedChecksums[file];
@@ -438,27 +439,27 @@ async function main() {
     } else if (currentHash === storedHash) {
       safe.push({ file, currentHash, storedHash });
     } else {
-      modified.push({ file, currentHash, storedHash, reason: 'user modified' });
-    }
-  }
-
+      modified.push({ file, currentHash, storedHash, reason: 'user modified' });
+    }
+  }
+
     // Also check for .claude/settings.json (might have user permissions)
-  const settingsFile = resolve(ROOT, '.claude', 'settings.json');
-  if (existsSync(settingsFile)) {
-    const settingsHash = sha256File(settingsFile);
-    const storedSettingsHash = storedChecksums['.claude/settings.json'];
-    if (storedSettingsHash && settingsHash !== storedSettingsHash) {
-      // User modified settings �?move to modified
-      // Remove from safe if it was there
-      const idx = safe.findIndex(s => s.file === '.claude/settings.json');
-      if (idx >= 0) {
-        safe.splice(idx, 1);
+  const settingsFile = resolve(ROOT, '.claude', 'settings.json');
+  if (existsSync(settingsFile)) {
+    const settingsHash = sha256File(settingsFile);
+    const storedSettingsHash = storedChecksums['.claude/settings.json'];
+    if (storedSettingsHash && settingsHash !== storedSettingsHash) {
+      // User modified settings �?move to modified
+      // Remove from safe if it was there
+      const idx = safe.findIndex(s => s.file === '.claude/settings.json');
+      if (idx >= 0) {
+        safe.splice(idx, 1);
         modified.push({ file: '.claude/settings.json', currentHash: settingsHash, storedHash: storedSettingsHash, reason: 'user modified settings (may contain permissions)' });
-      }
-    }
-  }
-
-  // 3. Output plan
+      }
+    }
+  }
+
+  // 3. Output plan
   if (jsonOut) {
     console.log(JSON.stringify({
       safe: safe.map(s => s.file),
@@ -491,29 +492,29 @@ async function main() {
     }, null, 2));
     return;
   }
-
-  console.log('\n🧹 WF-REMOVE �?Harness framework removal plan\n');
-
-  if (safe.length > 0) {
-    console.log(`�?SAFE (${safe.length} files �?auto-remove, unmodified framework):`);
-    for (const s of safe) console.log(`   �?${s.file}`);
-    console.log('');
-  }
-
-  if (modified.length > 0) {
-    console.log(`�?MODIFIED (${modified.length} files �?REQUIRE CONFIRMATION):`);
-    for (const m of modified) {
-      console.log(`   ? ${m.file}  [${m.reason}]`);
-    }
-    console.log('');
-  }
-
-  if (user.length > 0) {
-    console.log(`🔒 USER DATA (${user.length} files �?NEVER removed):`);
-    for (const u of user) console.log(`   �?${u.file}  [${u.reason}]`);
-    console.log('');
-  }
-
+
+  console.log('\n🧹 WF-REMOVE �?Harness framework removal plan\n');
+
+  if (safe.length > 0) {
+    console.log(`�?SAFE (${safe.length} files �?auto-remove, unmodified framework):`);
+    for (const s of safe) console.log(`   �?${s.file}`);
+    console.log('');
+  }
+
+  if (modified.length > 0) {
+    console.log(`�?MODIFIED (${modified.length} files �?REQUIRE CONFIRMATION):`);
+    for (const m of modified) {
+      console.log(`   ? ${m.file}  [${m.reason}]`);
+    }
+    console.log('');
+  }
+
+  if (user.length > 0) {
+    console.log(`🔒 USER DATA (${user.length} files �?NEVER removed):`);
+    for (const u of user) console.log(`   �?${u.file}  [${u.reason}]`);
+    console.log('');
+  }
+
   if (purge.length > 0) {
     console.log(`PURGE (${purge.length} files - explicit user-data cleanup):`);
     for (const p of purge) console.log(`   x ${p.file}  [${p.reason}]`);
@@ -521,41 +522,41 @@ async function main() {
   }
 
   console.log(`Summary: ${safe.length} safe, ${modified.length} need confirm, ${purge.length} purge, ${user.length} preserved, ${skipped.length} skipped\n`);
-
-  if (!apply) {
-    console.log('DRY-RUN. Use --apply to execute the removal.\n');
-    return;
-  }
-
-  // 4. Apply �?remove SAFE files automatically (rehash before unlink)
+
+  if (!apply) {
+    console.log('DRY-RUN. Use --apply to execute the removal.\n');
+    return;
+  }
+
+  // 4. Apply �?remove SAFE files automatically (rehash before unlink)
   let safeRemoved = 0;
   let safeFailed = 0;
-  for (const s of safe) {
-    const diskPath = safePath(s.file);
+  for (const s of safe) {
+    const diskPath = safePath(s.file);
     if (!diskPath) { console.error(`   �?Traversal rejected: ${s.file}`); safeFailed++; continue; }
     if (!existsSync(diskPath)) continue;
-    // Re-verify hash hasn't changed since classification
-    const currentHash = sha256File(diskPath);
-    if (currentHash !== s.storedHash) {
+    // Re-verify hash hasn't changed since classification
+    const currentHash = sha256File(diskPath);
+    if (currentHash !== s.storedHash) {
       console.log(`   �?Skipped (modified since classification): ${s.file}`);
       safeFailed++;
       continue;
-    }
-    try {
-      unlinkSync(diskPath);
-      safeRemoved++;
-    } catch (e) {
+    }
+    try {
+      unlinkSync(diskPath);
+      safeRemoved++;
+    } catch (e) {
       console.error(`   �?Failed to remove: ${s.file} �?${e.message}`);
       safeFailed++;
-    }
-  }
-  console.log(`�?Removed ${safeRemoved} safe files.`);
-
+    }
+  }
+  console.log(`�?Removed ${safeRemoved} safe files.`);
+
   // 5. Handle MODIFIED files �?prompt user
   let modifiedRemoved = 0;
   let modifiedKept = 0;
   let modifiedFailed = 0;
-
+
   for (const m of modified) {
     const canonicalModified = m.file.replace(/\\/g, '/').replace(/\/+/g, '/');
     if (deleteModified.has(canonicalModified)) {
@@ -569,19 +570,19 @@ async function main() {
       }
       continue;
     }
-    if (yes) {
-      // Non-interactive mode: skip all modified
-      console.log(`   �?Skipped (modified): ${m.file}`);
-      modifiedKept++;
-      continue;
-    }
-
-    console.log(`\n─── ${m.file} ───`);
-    console.log(`   Reason: ${m.reason}`);
-    console.log(`   [D]elete  [K]eep (default)`);
-
-    const answer = await askUser('   Choose [d/k]: ');
-    if (answer === 'd' || answer === 'delete') {
+    if (yes) {
+      // Non-interactive mode: skip all modified
+      console.log(`   �?Skipped (modified): ${m.file}`);
+      modifiedKept++;
+      continue;
+    }
+
+    console.log(`\n─── ${m.file} ───`);
+    console.log(`   Reason: ${m.reason}`);
+    console.log(`   [D]elete  [K]eep (default)`);
+
+    const answer = await askUser('   Choose [d/k]: ');
+    if (answer === 'd' || answer === 'delete') {
       const diskPath = safePath(m.file);
       if (!diskPath) { console.error(`   �?Traversal rejected: ${m.file}`); modifiedFailed++; continue; }
       try {
@@ -592,9 +593,9 @@ async function main() {
         console.error(`   �?Failed: ${m.file} �?${e.message}`);
         modifiedFailed++;
       }
-    } else {
-      console.log(`   �?Kept: ${m.file}`);
-      modifiedKept++;
+    } else {
+      console.log(`   �?Kept: ${m.file}`);
+      modifiedKept++;
     }
   }
 
@@ -629,14 +630,14 @@ async function main() {
   }
 
   // 6. Cleanup empty directories
-  for (const dir of CLEANUP_DIRS) {
-    removeEmptyDirs(resolve(ROOT, dir));
-  }
-  // Remove root Harness/ if empty
-  removeEmptyDirs(resolve(ROOT, 'Harness'));
-  // Remove root .claude/ if empty (but this is rare)
-  removeEmptyDirs(resolve(ROOT, '.claude'));
-
+  for (const dir of CLEANUP_DIRS) {
+    removeEmptyDirs(resolve(ROOT, dir));
+  }
+  // Remove root Harness/ if empty
+  removeEmptyDirs(resolve(ROOT, 'Harness'));
+  // Remove root .claude/ if empty (but this is rare)
+  removeEmptyDirs(resolve(ROOT, '.claude'));
+
   // 7. Remove version file if everything is gone
   if (existsSync(VERSION_FILE)) {
     const harPath = resolve(ROOT, 'Harness');
@@ -655,45 +656,45 @@ async function main() {
     } else if (!existsSync(harPath) || (existsSync(harPath) && readdirSync(harPath).filter(f => f !== '.harness-version').length === 0)) {
       unlinkSync(VERSION_FILE);
       console.log('�?Removed .harness-version (Harness directory empty).');
-    }
-  }
-
-  // 7.5 Prune stale checksums for files that no longer exist on disk
-  if (existsSync(VERSION_FILE)) {
-    const versionData = JSON.parse(readFileSync(VERSION_FILE, 'utf-8'));
-    const checksums = versionData.checksums || {};
-    let pruned = 0;
-    for (const file of Object.keys(checksums)) {
-      const diskPath = safePath(file);
-      if (!diskPath || !existsSync(diskPath)) {
-        delete checksums[file];
-        pruned++;
-      }
-    }
-    if (pruned > 0) {
-      versionData.checksums = checksums;
-      writeFileSync(VERSION_FILE, JSON.stringify(versionData, null, 2) + '\n', 'utf-8');
-      console.log(`�?Pruned ${pruned} stale checksum(s) from .harness-version.`);
-    }
-  }
-
-  // 8. Remove CLAUDE.md harness section if it only has harness binding
-  const claudePath = resolve(ROOT, 'CLAUDE.md');
-  if (existsSync(claudePath)) {
-    const content = readFileSync(claudePath, 'utf-8');
-    if (content.includes('Harness contract') || content.includes('Harness Binding')) {
-      const answer = yes ? 'k' : await askUser('\nCLAUDE.md contains Harness binding section. Remove it? [D]elete harness section / [K]eep as-is (default): ');
-      if (answer === 'd' || answer === 'delete') {
-        // Strip the harness section: everything from "## 1. Harness Binding" to the next "## "
-        const cleaned = content.replace(/## 1\. Harness Binding[\s\S]*?(?=## 2\.)/, '');
-        writeFileSync(claudePath, cleaned, 'utf-8');
-        console.log('�?Stripped Harness binding section from CLAUDE.md.');
-      }
-    }
-  }
-
-  console.log(`\n🏁 Done. Safe: ${safeRemoved} removed. Modified: ${modifiedRemoved} removed, ${modifiedKept} kept.`);
-  console.log('   Run `git status` to review changes.\n');
-}
-
-main().catch(e => { console.error(e); process.exit(1); });
+    }
+  }
+
+  // 7.5 Prune stale checksums for files that no longer exist on disk
+  if (existsSync(VERSION_FILE)) {
+    const versionData = JSON.parse(readFileSync(VERSION_FILE, 'utf-8'));
+    const checksums = versionData.checksums || {};
+    let pruned = 0;
+    for (const file of Object.keys(checksums)) {
+      const diskPath = safePath(file);
+      if (!diskPath || !existsSync(diskPath)) {
+        delete checksums[file];
+        pruned++;
+      }
+    }
+    if (pruned > 0) {
+      versionData.checksums = checksums;
+      writeFileSync(VERSION_FILE, JSON.stringify(versionData, null, 2) + '\n', 'utf-8');
+      console.log(`�?Pruned ${pruned} stale checksum(s) from .harness-version.`);
+    }
+  }
+
+  // 8. Remove CLAUDE.md harness section if it only has harness binding
+  const claudePath = resolve(ROOT, 'CLAUDE.md');
+  if (existsSync(claudePath)) {
+    const content = readFileSync(claudePath, 'utf-8');
+    if (content.includes('Harness contract') || content.includes('Harness Binding')) {
+      const answer = yes ? 'k' : await askUser('\nCLAUDE.md contains Harness binding section. Remove it? [D]elete harness section / [K]eep as-is (default): ');
+      if (answer === 'd' || answer === 'delete') {
+        // Strip the harness section: everything from "## 1. Harness Binding" to the next "## "
+        const cleaned = content.replace(/## 1\. Harness Binding[\s\S]*?(?=## 2\.)/, '');
+        writeFileSync(claudePath, cleaned, 'utf-8');
+        console.log('�?Stripped Harness binding section from CLAUDE.md.');
+      }
+    }
+  }
+
+  console.log(`\n🏁 Done. Safe: ${safeRemoved} removed. Modified: ${modifiedRemoved} removed, ${modifiedKept} kept.`);
+  console.log('   Run `git status` to review changes.\n');
+}
+
+main().catch(e => { console.error(e); process.exit(1); });