create-egregore 0.19.7 → 0.19.11

package/runtime/codex/bin/ingest.sh

@@ -0,0 +1,231 @@
+#!/bin/bash
+set -euo pipefail
+
+# Org-scoped intake plane. Shared manifests live in memory/; normalized bodies
+# stay in this checkout's gitignored cache; qmd uses a separate per-org index.
+
+ROOT="$(cd "$(dirname "$0")/.." && pwd)"
+export NODE_NO_WARNINGS=1
+PY="$ROOT/bin/ingest.py"
+SURFACE="$ROOT/bin/ingest_surface.py"
+SLUG="$(jq -r '.slug // "egregore"' "$ROOT/egregore.json")"
+INDEX="${SLUG}-ingest"
+COLLECTION="${SLUG}-ingest"
+INGEST_ROOT="${EGREGORE_INGEST_ROOT:-$ROOT/.egregore/ingest}"
+INGEST_META_ROOT="${EGREGORE_INGEST_META_ROOT:-$ROOT/memory/ingest}"
+QMD_VERSION="2.5.3"
+GRAPH_PROJECTOR="${EGREGORE_INGEST_GRAPH_PROJECTOR:-$ROOT/bin/ingest-graph.sh}"
+
+_qmd() {
+  if command -v qmd >/dev/null 2>&1; then
+    qmd --index "$INDEX" "$@"
+  else
+    npx -y "@tobilu/qmd@${QMD_VERSION}" --index "$INDEX" "$@"
+  fi
+}
+
+_ensure_index() {
+  mkdir -p "$INGEST_ROOT"
+  if ! _qmd collection list 2>/dev/null | grep -q "^${COLLECTION} "; then
+    _qmd collection add "$INGEST_ROOT" --name "$COLLECTION" >/dev/null
+  fi
+  _qmd update >/dev/null
+}
+
+_graph_sync() {
+  local source="${1:-}" manifest result status
+  local total=0 succeeded=0 failed=0 stored=0 queries=0
+  local manifests=()
+  if [ -n "$source" ]; then
+    manifests+=("$INGEST_META_ROOT/sources/$source/manifest.json")
+  else
+    while IFS= read -r manifest; do manifests+=("$manifest"); done < <(
+      find "$INGEST_META_ROOT/sources" "$INGEST_META_ROOT/knowledge" \
+        -type f -name '*.json' 2>/dev/null | sort
+    )
+  fi
+  for manifest in "${manifests[@]}"; do
+    [ -f "$manifest" ] || continue
+    total=$((total + 1))
+    if result="$(bash "$GRAPH_PROJECTOR" apply "$manifest")"; then
+      status="$(printf '%s' "$result" | jq -r '.status')"
+      queries=$((queries + $(printf '%s' "$result" | jq -r '.queries // 0')))
+      if [ "$status" = "stored" ]; then stored=$((stored + 1)); else succeeded=$((succeeded + 1)); fi
+    else
+      failed=$((failed + 1))
+    fi
+  done
+  if [ "$failed" -gt 0 ]; then
+    jq -cn --argjson manifests "$total" --argjson succeeded "$succeeded" --argjson stored "$stored" --argjson failed "$failed" --argjson queries "$queries" \
+      '{status:"partial",manifests:$manifests,succeeded:$succeeded,stored:$stored,failed:$failed,queries:$queries,replayable:true}'
+    return 1
+  fi
+  if [ "$total" -eq 0 ]; then
+    printf '%s\n' '{"status":"nothing-to-project","manifests":0,"failed":0,"queries":0,"replayable":true}'
+  elif [ "$stored" -eq "$total" ]; then
+    jq -cn --argjson manifests "$total" --argjson queries "$queries" \
+      '{status:"stored-local",manifests:$manifests,failed:0,queries:$queries,replayable:true}'
+  else
+    jq -cn --argjson manifests "$total" --argjson queries "$queries" \
+      '{status:"synced",manifests:$manifests,failed:0,queries:$queries,replayable:true}'
+  fi
+}
+
+_journal() {
+  local source="$1" phase="$2" detail="${3:-}"
+  [ -n "$detail" ] || detail='{}'
+  python3 "$PY" journal --source "$source" --phase "$phase" --detail "$detail"
+}
+
+_journal_clear() {
+  python3 "$PY" journal --source "$1" --clear
+}
+
+_notify_receipt() {
+  local url="$1" token="$2" payload="$3"
+  [ -z "$url" ] && return 0
+  python3 - "$url" "$token" "$payload" <<'PY' >/dev/null 2>&1 || true
+import sys, urllib.request
+body = sys.argv[3].encode()
+request = urllib.request.Request(
+    sys.argv[1] + "/api/result",
+    data=body,
+    method="POST",
+    headers={"Content-Type": "application/json", "X-Egregore-Token": sys.argv[2]},
+)
+urllib.request.urlopen(request, timeout=5).read()
+PY
+}
+
+cmd_add() {
+  local source="" summary graph final qmd_status
+  local args=("$@")
+  local i
+  for ((i=0; i<${#args[@]}; i++)); do
+    if [ "${args[$i]}" = "--source" ] && [ $((i+1)) -lt ${#args[@]} ]; then source="${args[$((i+1))]}"; fi
+  done
+  summary="$(python3 "$PY" add "$@")"
+  _journal "$source" "normalized" "$(printf '%s' "$summary" | jq -c '{ingested,unchanged,metadata_updated,skipped,pruned}')"
+  if ! _ensure_index; then
+    qmd_status='{"status":"failed"}'
+    _journal "$source" "index_failed" "$qmd_status"
+    printf '%s\n' "$summary" | jq --argjson qmd "$qmd_status" '. + {status:"failed",qmd:$qmd,graph:{status:"not-attempted"}}'
+    return 1
+  fi
+  qmd_status='{"status":"indexed"}'
+  if graph="$(_graph_sync "$source")"; then :; else :; fi
+  if [ "$(printf '%s' "$summary" | jq -r .skipped)" -gt 0 ]; then
+    _journal "$source" "extraction_attention" "$(printf '%s' "$summary" | jq -c '{skipped}')"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" '. + {status:"attention",qmd:$qmd,graph:$graph}')"
+  elif [ "$(printf '%s' "$graph" | jq -r .status)" = "partial" ]; then
+    _journal "$source" "graph_pending" "$graph"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" '. + {status:"attention",qmd:$qmd,graph:$graph}')"
+  else
+    _journal_clear "$source"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" '. + {status:"complete",qmd:$qmd,graph:$graph}')"
+  fi
+  printf '%s\n' "$final"
+}
+
+cmd_add_selection() {
+  local manifest="${1:?usage: bin/ingest.sh add-selection MANIFEST}"
+  local source receipt_url receipt_token summary graph qmd_status outcome final message contract
+  contract="$(python3 - "$manifest" <<'PY'
+import json, sys
+value = json.load(open(sys.argv[1], encoding="utf-8"))
+print(json.dumps({"source": value["source"]["id"], "url": value.get("receipt", {}).get("url", ""), "token": value.get("receipt", {}).get("token", "")}))
+PY
+)"
+  source="$(printf '%s' "$contract" | jq -r .source)"
+  receipt_url="$(printf '%s' "$contract" | jq -r .url)"
+  receipt_token="$(printf '%s' "$contract" | jq -r .token)"
+  if ! summary="$(python3 "$PY" add-selection "$manifest")"; then
+    final="$(jq -cn --arg source "$source" '{status:"failed",outcome:"normalization failed",source:$source,message:"The selection failed validation or extraction. Its staging directory was retained for diagnosis."}')"
+    _notify_receipt "$receipt_url" "$receipt_token" "$final"
+    return 2
+  fi
+  _journal "$source" "normalized" "$(printf '%s' "$summary" | jq -c '{ingested,unchanged,metadata_updated,skipped,pruned}')"
+  if _ensure_index; then
+    qmd_status='{"status":"indexed"}'
+  else
+    qmd_status='{"status":"failed"}'
+    _journal "$source" "index_failed" "$qmd_status"
+  fi
+  if [ "$(printf '%s' "$qmd_status" | jq -r .status)" = "indexed" ]; then
+    if graph="$(_graph_sync "$source")"; then :; else :; fi
+  else
+    graph='{"status":"not-attempted","batches":0,"failed":0}'
+  fi
+  if [ "$(printf '%s' "$qmd_status" | jq -r .status)" != "indexed" ]; then
+    outcome="index failed"
+    message="The normalized source was retained, but QMD did not finish indexing it. Run bin/ingest.sh reindex to repair it."
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" --arg outcome "$outcome" --arg message "$message" '. + {status:"failed",outcome:$outcome,message:$message,qmd:$qmd,graph:$graph}')"
+  elif [ "$(printf '%s' "$summary" | jq -r '.skipped')" -gt 0 ]; then
+    outcome="indexed with skipped files"
+    message="Searchable files were indexed, but one or more files still need a compatible extractor. Their staging bytes were retained."
+    _journal "$source" "extraction_attention" "$(printf '%s' "$summary" | jq -c '{skipped,selection_path}')"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" --arg outcome "$outcome" --arg message "$message" '. + {status:"attention",outcome:$outcome,message:$message,qmd:$qmd,graph:$graph}')"
+  elif [ "$(printf '%s' "$graph" | jq -r .status)" = "partial" ]; then
+    outcome="indexed · graph pending"
+    message="The source is searchable now. Graph projection was incomplete and is recorded for retry."
+    _journal "$source" "graph_pending" "$graph"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" --arg outcome "$outcome" --arg message "$message" '. + {status:"attention",outcome:$outcome,message:$message,qmd:$qmd,graph:$graph}')"
+  else
+    outcome="indexed · org-scoped · unverified"
+    message="The files were validated, normalized, and added to this organization’s retrieval index."
+    _journal_clear "$source"
+    final="$(printf '%s' "$summary" | jq --argjson qmd "$qmd_status" --argjson graph "$graph" --arg outcome "$outcome" --arg message "$message" '. + {status:"complete",outcome:$outcome,message:$message,qmd:$qmd,graph:$graph}')"
+  fi
+  _notify_receipt "$receipt_url" "$receipt_token" "$final"
+  printf '%s\n' "$final"
+}
+
+cmd_search() {
+  local query="${1:?usage: bin/ingest.sh search \"query\" [--source id] [--boundary key=value] [-n N]}"
+  shift
+  local limit=8 raw filtered filter_args=() qmd_n=200
+  while [ $# -gt 0 ]; do
+    case "$1" in
+      -n) limit="$2"; shift 2 ;;
+      --source) filter_args+=(--source "$2"); shift 2 ;;
+      --boundary) filter_args+=(--boundary "$2"); shift 2 ;;
+      *) echo "unknown search option: $1" >&2; exit 2 ;;
+    esac
+  done
+  _ensure_index
+  raw="$(_qmd search "$query" -c "$COLLECTION" -n "$qmd_n" --all --json 2>/dev/null || echo '[]')"
+  if [ ${#filter_args[@]} -gt 0 ]; then
+    filtered="$(printf '%s' "$raw" | python3 "$PY" filter-results "${filter_args[@]}" --limit "$limit")"
+  else
+    filtered="$(printf '%s' "$raw" | python3 "$PY" filter-results --limit "$limit")"
+  fi
+  printf '%s' "$filtered" | jq -r --arg org "$SLUG" '
+    "⌕ ingest · keyword · \(length) hit\(if length == 1 then "" else "s" end) · org=" + $org,
+    (.[] | "\n### " + (.title // .file) + "\n" + .file + "\n\n" + (.snippet // ""))'
+}
+
+case "${1:-}" in
+  select) shift; python3 "$SURFACE" "$@" ;;
+  add) shift; cmd_add "$@" ;;
+  add-selection) shift; cmd_add_selection "$@" ;;
+  register-extraction) shift; python3 "$PY" register-extraction "$@" ;;
+  search) shift; cmd_search "$@" ;;
+  reindex)
+    _ensure_index
+    if graph="$(_graph_sync "")"; then
+      find "$INGEST_ROOT/.state" -type f -name '*.json' -delete 2>/dev/null || true
+    fi
+    printf '%s\n' "$graph"
+    ;;
+  graph-sync) shift; _graph_sync "${1:-}" ;;
+  status) python3 "$PY" status; _qmd status 2>/dev/null || true ;;
+  *)
+    echo 'usage: bash bin/ingest.sh {select|add|add-selection|register-extraction|search|reindex|graph-sync|status}' >&2
+    echo '  select [--no-open] [--timeout SECONDS]' >&2
+    echo '  add PATH --source ID [--name NAME] [--kind TYPE] [--boundary key=value]... [--prune]' >&2
+    echo '  add-selection MANIFEST' >&2
+    echo '  register-extraction MANIFEST RELATIVE_PATH --extractor NAME < normalized.txt' >&2
+    echo '  search "QUERY" [--source ID] [--boundary key=value]... [-n N]' >&2
+    exit 2
+    ;;
+esac