crbro-memory 1.13.0 → 1.14.0

package/dist/search/semantic.js

@@ -0,0 +1,250 @@
+"use strict";
+// ─── CRBRO Semantic layer — opt-in ───────────────────────────────
+//
+// BM25 has no synonyms. The blind benchmark says where that bites: after the
+// 1.13 ranking fixes and the synonym table, the misses that remain are pure
+// vocabulary — "alojadas" for a fact about a Hetzner VPS, "seguridad" for a
+// fact about Wordfence, "proveedor de email" for one about Mailchimp. No
+// table closes those; an embedding model does.
+//
+// It is OPT-IN and stays that way, for three measured reasons:
+//   - the model is a 118 MB download (Xenova/multilingual-e5-small, int8 —
+//     the 470 MB figure that got it rejected in 1.4 was the fp32 file);
+//   - the runtime (transformers.js + onnxruntime) is ~380 MB of node modules
+//     that most users never need, and a cold load takes ~13 s per process;
+//   - a first pass over the reference brain (5,124 chunks) takes about a
+//     minute and a half at ~18 ms per line.
+// So nothing here is installed, downloaded or loaded unless the user runs
+// `npx crbro-memory semantic install` AND sets CRBRO_SEMANTIC=1. Without
+// both, this file is dead code and recall is exactly the 1.13 engine.
+//
+// Design:
+//   - The runtime lives in ONE machine-level home (~/.crbro/.semantic), not
+//     in the package: `npm install` puts it there and the model cache sits
+//     next to it. Brains are per-user, the model is per-machine.
+//   - Vectors are keyed by chunk id, which is a content hash: a fact that
+//     did not change is never embedded twice, so re-indexing a neuron costs
+//     only its NEW lines.
+//   - Fusion with BM25 is reciprocal-rank (RRF): rank-based, so the two
+//     score scales never have to agree.
+//   - Every failure degrades to "no semantic layer", never to "no recall".
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.SemanticIndex = exports.SEMANTIC_DIM = exports.SEMANTIC_DTYPE = exports.SEMANTIC_MODEL = void 0;
+exports.semanticEnabled = semanticEnabled;
+exports.semanticHome = semanticHome;
+exports.resolveRuntime = resolveRuntime;
+exports.semanticStatus = semanticStatus;
+const node_module_1 = require("node:module");
+const node_url_1 = require("node:url");
+const node_fs_1 = require("node:fs");
+const node_path_1 = __importDefault(require("node:path"));
+const node_os_1 = __importDefault(require("node:os"));
+exports.SEMANTIC_MODEL = 'Xenova/multilingual-e5-small';
+exports.SEMANTIC_DTYPE = 'q8';
+exports.SEMANTIC_DIM = 384;
+const BATCH = 16;
+/** e5 models are trained with these prefixes; without them quality drops. */
+const QUERY_PREFIX = 'query: ';
+const PASSAGE_PREFIX = 'passage: ';
+/** Longer passages are truncated by the tokenizer anyway; cap the work. */
+const MAX_CHARS = 2000;
+function semanticEnabled() {
+    const v = (process.env.CRBRO_SEMANTIC || '').toLowerCase();
+    return v === '1' || v === 'on' || v === 'true';
+}
+/** Where the runtime and the model cache live. Machine-level, not brain-level. */
+function semanticHome() {
+    return process.env.CRBRO_SEMANTIC_HOME || node_path_1.default.join(node_os_1.default.homedir(), '.crbro', '.semantic');
+}
+/** Resolve the transformers.js entry point inside the semantic home, or null. */
+function resolveRuntime() {
+    try {
+        const req = (0, node_module_1.createRequire)(node_path_1.default.join(semanticHome(), 'package.json'));
+        return req.resolve('@huggingface/transformers');
+    }
+    catch {
+        return null;
+    }
+}
+function semanticStatus() {
+    return {
+        installed: resolveRuntime() !== null,
+        enabled: semanticEnabled(),
+        home: semanticHome(),
+        model: `${exports.SEMANTIC_MODEL} (${exports.SEMANTIC_DTYPE})`,
+    };
+}
+class SemanticIndex {
+    dir;
+    ids = [];
+    pos = new Map();
+    vectors = new Float32Array(0);
+    extractor = null;
+    loading = null;
+    dirty = false;
+    /** Set once the runtime or the model failed to load: never retried in-process. */
+    broken = null;
+    constructor(dir) {
+        this.dir = dir;
+    }
+    metaPath() { return node_path_1.default.join(this.dir, 'vectors.meta.json'); }
+    dataPath() { return node_path_1.default.join(this.dir, 'vectors.f32'); }
+    count() { return this.ids.length; }
+    has(id) { return this.pos.has(id); }
+    ready() { return this.broken === null && resolveRuntime() !== null; }
+    whyNot() { return this.broken; }
+    /**
+     * Start loading the model in the background. A cold load takes ~13 s on a
+     * laptop; paying it at the first recall of the session is the worst place.
+     * Boot is not delayed — the first query simply awaits whatever is left.
+     */
+    warm() {
+        if (!this.ready() || this.extractor)
+            return;
+        void this.model().catch(() => { });
+    }
+    /** Load the stored vectors, if any. Never throws. */
+    async load() {
+        try {
+            const meta = JSON.parse(await node_fs_1.promises.readFile(this.metaPath(), 'utf8'));
+            if (meta.model !== exports.SEMANTIC_MODEL || meta.dim !== exports.SEMANTIC_DIM)
+                return;
+            const buf = await node_fs_1.promises.readFile(this.dataPath());
+            const expected = meta.ids.length * exports.SEMANTIC_DIM * 4;
+            if (buf.byteLength !== expected)
+                return;
+            this.vectors = new Float32Array(buf.buffer.slice(buf.byteOffset, buf.byteOffset + buf.byteLength));
+            this.ids = meta.ids;
+            this.pos = new Map(meta.ids.map((id, i) => [id, i]));
+        }
+        catch {
+            // No vectors yet, or unreadable: start empty. Embedding is incremental.
+        }
+    }
+    async persist() {
+        if (!this.dirty)
+            return;
+        await node_fs_1.promises.mkdir(this.dir, { recursive: true });
+        const meta = { model: exports.SEMANTIC_MODEL, dtype: exports.SEMANTIC_DTYPE, dim: exports.SEMANTIC_DIM, ids: this.ids };
+        const tmpMeta = this.metaPath() + '.tmp';
+        const tmpData = this.dataPath() + '.tmp';
+        await node_fs_1.promises.writeFile(tmpData, Buffer.from(this.vectors.buffer, this.vectors.byteOffset, this.vectors.byteLength));
+        await node_fs_1.promises.writeFile(tmpMeta, JSON.stringify(meta));
+        await node_fs_1.promises.rename(tmpData, this.dataPath());
+        await node_fs_1.promises.rename(tmpMeta, this.metaPath());
+        this.dirty = false;
+    }
+    /** Load transformers.js from the semantic home and build the extractor. */
+    async model() {
+        if (this.extractor)
+            return this.extractor;
+        if (this.broken)
+            throw new Error(this.broken);
+        if (!this.loading) {
+            this.loading = (async () => {
+                const entry = resolveRuntime();
+                if (!entry) {
+                    this.broken = 'transformers.js is not installed: run `npx crbro-memory semantic install`.';
+                    throw new Error(this.broken);
+                }
+                const mod = await import((0, node_url_1.pathToFileURL)(entry).href);
+                const tf = mod.pipeline ? mod : mod.default;
+                tf.env.cacheDir = node_path_1.default.join(semanticHome(), 'models');
+                tf.env.allowLocalModels = true;
+                tf.env.allowRemoteModels = true;
+                this.extractor = await tf.pipeline('feature-extraction', exports.SEMANTIC_MODEL, { dtype: exports.SEMANTIC_DTYPE });
+                return this.extractor;
+            })().catch(err => {
+                this.broken = this.broken || `semantic model failed to load: ${err instanceof Error ? err.message : String(err)}`;
+                this.loading = null;
+                throw err;
+            });
+        }
+        return this.loading;
+    }
+    async embed(texts, kind) {
+        const extractor = await this.model();
+        const prefix = kind === 'query' ? QUERY_PREFIX : PASSAGE_PREFIX;
+        const out = [];
+        for (let i = 0; i < texts.length; i += BATCH) {
+            const batch = texts.slice(i, i + BATCH).map(t => prefix + t.slice(0, MAX_CHARS));
+            const res = await extractor(batch, { pooling: 'mean', normalize: true });
+            // res.data is a flat typed array of batch × dim.
+            const flat = res.data instanceof Float32Array ? res.data : Float32Array.from(res.data);
+            for (let j = 0; j < batch.length; j++) {
+                out.push(flat.slice(j * exports.SEMANTIC_DIM, (j + 1) * exports.SEMANTIC_DIM));
+            }
+        }
+        return out;
+    }
+    /**
+     * Embed the entries whose id is not stored yet. Ids are content hashes, so
+     * an unchanged line is never embedded twice.
+     */
+    async upsert(entries) {
+        const nuevos = entries.filter(e => e.text && !this.pos.has(e.id));
+        if (nuevos.length === 0)
+            return 0;
+        const vecs = await this.embed(nuevos.map(e => e.text), 'passage');
+        // The base offset is captured once: ids.push inside the loop would
+        // otherwise move it with every vector. Found as a RangeError, silently
+        // swallowed upstream — which is why the first benchmark run showed no
+        // change at all. Measure the effect, not the artefact.
+        const base = this.ids.length;
+        const grown = new Float32Array((base + nuevos.length) * exports.SEMANTIC_DIM);
+        grown.set(this.vectors, 0);
+        for (let i = 0; i < nuevos.length; i++) {
+            grown.set(vecs[i], (base + i) * exports.SEMANTIC_DIM);
+            this.pos.set(nuevos[i].id, base + i);
+            this.ids.push(nuevos[i].id);
+        }
+        this.vectors = grown;
+        this.dirty = true;
+        return nuevos.length;
+    }
+    /** Drop vectors for ids that left the index. */
+    remove(ids) {
+        const gone = new Set();
+        for (const id of ids)
+            if (this.pos.has(id))
+                gone.add(id);
+        if (gone.size === 0)
+            return 0;
+        const keepIds = [];
+        const keep = new Float32Array((this.ids.length - gone.size) * exports.SEMANTIC_DIM);
+        let k = 0;
+        for (let i = 0; i < this.ids.length; i++) {
+            if (gone.has(this.ids[i]))
+                continue;
+            keep.set(this.vectors.subarray(i * exports.SEMANTIC_DIM, (i + 1) * exports.SEMANTIC_DIM), k * exports.SEMANTIC_DIM);
+            keepIds.push(this.ids[i]);
+            k++;
+        }
+        this.ids = keepIds;
+        this.vectors = keep;
+        this.pos = new Map(keepIds.map((id, i) => [id, i]));
+        this.dirty = true;
+        return gone.size;
+    }
+    /** The k nearest chunks to the question, by cosine. */
+    async query(text, k) {
+        if (this.ids.length === 0)
+            return [];
+        const [q] = await this.embed([text], 'query');
+        const scores = new Float32Array(this.ids.length);
+        for (let i = 0; i < this.ids.length; i++) {
+            let dot = 0;
+            const off = i * exports.SEMANTIC_DIM;
+            for (let d = 0; d < exports.SEMANTIC_DIM; d++)
+                dot += q[d] * this.vectors[off + d];
+            scores[i] = dot;
+        }
+        const idx = Array.from(scores.keys()).sort((a, b) => scores[b] - scores[a]).slice(0, k);
+        return idx.map(i => ({ id: this.ids[i], score: Math.round(scores[i] * 1000) / 1000 }));
+    }
+}
+exports.SemanticIndex = SemanticIndex;
+//# sourceMappingURL=semantic.js.map

package/dist/search/semantic.js.map

@@ -0,0 +1 @@
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package/dist/types/index.d.ts

@@ -207,6 +207,8 @@ export interface SearchResult {
      * much to trust it.
      */
     confidence?: 'strong' | 'weak';
+    /** Cosine similarity from the opt-in semantic layer, when it saw this chunk. */
+    semantic_score?: number;
     /**
      * The next best live chunks of the same neuron, for the top results only —
      * one neuron can answer with more than one line, and the line you need is

package/dist/types/index.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,54 +1,54 @@
-{
-  "name": "crbro-memory",
-  "version": "1.13.0",
-  "mcpName": "io.github.Octonove/crbro-memory",
-  "description": "CRBRO — Persistent neural memory for AI. A biological file-based MCP server that gives your AI long-term memory across sessions.",
-  "main": "dist/index.js",
-  "types": "dist/index.d.ts",
-  "bin": {
-    "crbro-memory": "./bin/crbro.mjs"
-  },
-  "scripts": {
-    "build": "tsc",
-    "dev": "tsc --watch",
-    "start": "node dist/index.js",
-    "test": "vitest run",
-    "test:watch": "vitest",
-    "prepublishOnly": "npm run build"
-  },
-  "keywords": [
-    "mcp",
-    "memory",
-    "ai",
-    "persistent-memory",
-    "model-context-protocol",
-    "llm",
-    "synthetica"
-  ],
-  "author": "Synthetica Decks",
-  "license": "MIT",
-  "repository": {
-    "type": "git",
-    "url": "https://github.com/Octonove/crbro-memory"
-  },
-  "engines": {
-    "node": ">=18.0.0"
-  },
-  "files": [
-    "dist/",
-    "bin/",
-    "hooks/",
-    "README.md",
-    "LICENSE"
-  ],
-  "dependencies": {
-    "@modelcontextprotocol/sdk": "^1.29.0",
-    "@orama/orama": "^3.1.18",
-    "zod": "^4.4.3"
-  },
-  "devDependencies": {
-    "@types/node": "^25.6.0",
-    "typescript": "^6.0.3",
-    "vitest": "^4.1.5"
-  }
-}
+{
+  "name": "crbro-memory",
+  "version": "1.14.0",
+  "mcpName": "io.github.Octonove/crbro-memory",
+  "description": "CRBRO — Persistent neural memory for AI. A biological file-based MCP server that gives your AI long-term memory across sessions.",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "crbro-memory": "./bin/crbro.mjs"
+  },
+  "scripts": {
+    "build": "tsc",
+    "dev": "tsc --watch",
+    "start": "node dist/index.js",
+    "test": "vitest run",
+    "test:watch": "vitest",
+    "prepublishOnly": "npm run build"
+  },
+  "keywords": [
+    "mcp",
+    "memory",
+    "ai",
+    "persistent-memory",
+    "model-context-protocol",
+    "llm",
+    "synthetica"
+  ],
+  "author": "Synthetica Decks",
+  "license": "MIT",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/Octonove/crbro-memory"
+  },
+  "engines": {
+    "node": ">=18.0.0"
+  },
+  "files": [
+    "dist/",
+    "bin/",
+    "hooks/",
+    "README.md",
+    "LICENSE"
+  ],
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.29.0",
+    "@orama/orama": "^3.1.18",
+    "zod": "^4.4.3"
+  },
+  "devDependencies": {
+    "@types/node": "^25.6.0",
+    "typescript": "^6.0.3",
+    "vitest": "^4.1.5"
+  }
+}