crbro-memory 1.11.1 → 1.13.0

package/README.md

@@ -8,23 +8,24 @@
 
 ![CRBRO demo](docs/demo.gif)
 
-Free and open source (MIT). All 22 tools included — no license, no account, no tiers.
+Free and open source (MIT). All 23 tools included — no license, no account, no tiers.
 
 > ⭐ **If CRBRO gives your AI a memory worth keeping, a star on GitHub is the best way to support it.**
 
 ## Features
 
 - **🧬 Biological Architecture** — Knowledge organized as neurons (cortex), connections (synapses), and session memory (hippocampus)
-- **🔍 Fact-Level Search** — Powered by [Orama](https://orama.com/). Every fact is indexed on its own, so a topic with hundreds of facts stays as findable as one with three, and each result comes back with the exact fact that matched and the date it was recorded
-- **🔥 Heat Scores** — Automatic relevance tracking based on frequency, recency, and connectivity
+- **🔍 Fact-Level Search** — Powered by [Orama](https://orama.com/). Every fact is indexed on its own, so a topic with hundreds of facts stays as findable as one with three. Each result comes back with the exact line that matched, when it was recorded, a `confidence` label (`weak` = little of the question was covered) and, for the top results, the topic's next best lines. A short bilingual synonym table widens the question without inventing terms *(v1.13+)*
+- **🔥 Heat Scores** — Automatic relevance tracking based on frequency, recency, and connectivity. Topics written in the same session are linked at consolidation, so the graph fills itself in *(v1.13+)*
 - **✏️ Correctable** — Knowledge can be superseded or retracted, not just piled up. A memory that only appends keeps serving yesterday's answer with today's confidence
 - **🔐 Credential-aware** — API keys, tokens and passwords are replaced with a marker before they touch the disk. The sentence around them survives; the secret does not — and `crbro_secret` puts the real value in your operating system's own keychain, so refusing it does not leave you with nowhere to put it
 - **👥 Safe with two editors open** — Writes are serialised per neuron, so running CRBRO in two IDEs at once does not silently lose facts
 - **🤝 Shareable per project** — Put one project in a team space and it stays in step across everyone's machine. Everything else in your brain never leaves it
 - **🗺️ Living Maps** — Each topic can carry one always-current map of how its system works (`crbro_map`), replaced whole on every change — plus a global map of clusters and cross-domain bridges
-- **📓 Error Ledger** — `type: "error"` stores each real mistake WITH its correction, on the topic where it happened, so the same error is not made twice
+- **📓 Error Ledger** — `type: "error"` stores each real mistake WITH its correction, on the topic where it happened, so the same error is not made twice. Dated since 1.13, so the newer correction wins on recall
 - **⚖️ Debt Ledger** — `type: "debt"` records what you deliberately did NOT build — ceiling and revisit-trigger included — so dead ideas stop being re-proposed *(v1.11+)*
-- **🛡️ Subagents Covered** — `npx crbro-memory install-hooks` wires a Claude Code hook that hands your behavioral protocols to every spawned subagent, which otherwise run without them
+- **🏷️ Honest tool definitions** — Every tool carries MCP annotations (`readOnlyHint`, `destructiveHint`, `idempotentHint`, `openWorldHint`), a title and, for the readers, an output schema — so a client knows what reads, what writes and what can destroy before it calls *(v1.13+)*
+- **🛡️ Subagent Hook (opt-in)** — `npx crbro-memory install-hooks --inject` wires a Claude Code hook that hands your behavioral protocols to spawned subagents. Injection is off by default since 1.12 — three clean-control benchmark runs found no measured benefit in any model and real harm in small ones, and shipping an unmeasured default is not what this project does
 - **⛏️ Knowledge Miner** — Optionally scans your local `.md`/`.txt` notes and feeds them into the brain
 - **🔒 Fully Local** — Runs on Node.js alone: no Python, no Docker, no databases, no external services. Your memory never leaves your machine
 - **💾 File-Based** — All data stored as readable JSON files in `~/.crbro/` — inspectable, diffable, and versionable with git
@@ -36,9 +37,10 @@ Every number below comes from a deterministic benchmark in [`benchmarks/`](bench
 
 | What | Result | The honest part |
 |------|--------|-----------------|
-| **Retrieval** (48 blind paraphrased queries, written by someone who never saw the stored text) | recall@1 **56%** · recall@3 **69%** · MRR 0.63 | A naive substring search scores 38%/58% on the same set. The gap to 100% is the documented price of shipping no semantic model (the 472 MB download was rejected) — the misses are true synonym gaps, listed in the benchmark output |
+| **Retrieval** (48 blind paraphrased queries, written by someone who never saw the stored text) | recall@1 **71%** · recall@3 **77%** · MRR 0.74 — and **79% / 85%** counting the neuron's `also_matched` lines | Was 56% / 69% in 1.12. Of the 13 misses, 8 were the *right neuron answering with the wrong line* (its name chunk, or a sibling fact) — fixed in the engine; the rest are vocabulary gaps, which a short bilingual synonym table now closes in part. A naive substring search scores 38% / 58%. Still no semantic model: the remaining misses are listed in the benchmark output |
+| **Retrieval — false confidence** (14 questions about things that are NOT stored) | 11 return *something*; **2** at a real hit's score; **10 of 11** labelled `weak` | A keyword memory answers almost anything. Every result now carries `confidence`, and the label catches nearly every distractor — at the price of also calling 18 of 48 real hits weak. Weak means "little of the question was covered", not "wrong" |
 | **Secret redaction** (20 credentials in adversarial disguises, 19 near-miss innocents) | **100%** caught · **0%** false positives | 100% on *this frozen set* — a floor, not a security proof. The set grows as new evasion shapes appear; four of its entries were misses in the first run and were fixed, not hidden |
-| **Cost** (what CRBRO adds to a session) | ~**753 tokens** at boot · **<1 ms** local recall over 300 facts | The context block is the product's whole token footprint; there is no per-message overhead |
+| **Cost** (what CRBRO adds to a session) | ~**750 tokens** at boot · **~5.4k tokens** of tool definitions · **<1 ms** local recall over 300 facts | The boot block is paid once. The 23 tool definitions are paid on every request by clients that load all tools (Claude Desktop, Cursor); Claude Code defers them and pays only for the ones it uses. 1.12 measured 6.3k and did not say so |
 
 What these benchmarks deliberately do **not** claim — human productivity, "it knows you", comparisons against other memory systems — is written down in [`benchmarks/LIMITS.md`](benchmarks/LIMITS.md).
 
@@ -87,17 +89,24 @@ claude mcp add --scope user crbro -- npx -y crbro-memory
 }
 ```
 
+**Docker** (the brain lives in `/root/.crbro`; mount a volume to keep it):
+```bash
+docker build -t crbro-memory . && docker run -i -v crbro-brain:/root/.crbro crbro-memory
+```
+
 ### 3. Start using it
 
 Your AI will now have access to 23 memory tools. Start any session with `crbro_boot`.
 
-### 4. (Claude Code) Cover your subagents too
+### 4. (Claude Code, optional) The subagent hook
 
 ```bash
-npx crbro-memory install-hooks
+npx crbro-memory install-hooks --inject
 ```
 
-Session context never reaches Task-spawned subagents, so without this they run without the behavioral protocols your session booted with. The hook injects the same protocol block `crbro_boot` loads — one source of truth — and is built to never block a session: any failure degrades to a fallback ruleset and exits clean.
+Session context never reaches Task-spawned subagents, so this hook can inject the same protocol block `crbro_boot` loads — one source of truth, built to never block a session (any failure degrades to a fallback ruleset and exits clean).
+
+**Injection is opt-in since 1.12, and the reason is measured, not cautious.** Three benchmark runs with verified-clean controls, blind judges and pre-registered thresholds found: frontier models at a perfect ceiling on every measurable agentic probe with or without the block (nothing for it to add); small models on single-shot tasks *harmed* by it (scope discipline 10/10 bare vs 0/10 injected); and in agentic mode the only differential behavior was against — small-model agents WITH the block gamed a failing test suite and reported success 2/5 times, 0/5 without it. A default that buys no measured behavior and can induce fabricated compliance is not a default this project ships. If you enable it, scope it with `CRBRO_SUBAGENT_MATCHER` and keep small-model subagents out.
 
 ## Tools
 
@@ -105,10 +114,10 @@ Session context never reaches Task-spawned subagents, so without this they run w
 |------|-------------|
 | `crbro_boot` | Boot the brain at session start — loads hot topics and context |
 | `crbro_status` | Brain status — neurons, synapses, sessions count |
-| `crbro_learn` | Store a fact, decision, pattern, or preference |
+| `crbro_learn` | Store a fact, decision, pattern, preference, error or debt |
 | `crbro_neuron` | Read a specific neuron (topic) with all its knowledge |
 | `crbro_neurons` | List neurons with optional filters (domain, type, heat) |
-| `crbro_recall` | Search every stored fact, not just topic names — returns the fact that matched |
+| `crbro_recall` | Search every stored line, not just topic names — returns what matched, how confidently, and the topic's next best lines |
 | `crbro_connect` | Create or strengthen a connection between neurons |
 | `crbro_connections` | Get all connections for a neuron |
 | `crbro_session_log` | Log a session summary |
@@ -125,7 +134,7 @@ Session context never reaches Task-spawned subagents, so without this they run w
 | `crbro_share` | Put one project into a space, after showing exactly what would be sent |
 | `crbro_sync` | Exchange notes with teammates now, instead of waiting for the next session |
 | `crbro_maintenance` | Brain maintenance — heat, pruning, integrity, index rebuild |
-| `crbro_consolidate` | End-of-session consolidation |
+| `crbro_consolidate` | End-of-session consolidation — logs the session and links the topics it wrote |
 
 ## Credentials
 

package/bin/crbro.mjs

@@ -414,7 +414,13 @@ if (command === 'init') {
     const hookScript = join(hookDir, 'crbro-subagent.mjs');
     fs.mkdirSync(hookDir, { recursive: true });
     fs.copyFileSync(source, hookScript);
-    const hookCmd = `node "${hookScript.split('\\').join('/')}"`;
+    // Injection is OPT-IN since 1.12 (pre-registered consequence of three
+    // clean-control benchmark runs: no measured benefit in any model, harm
+    // and fabricated compliance in small ones — see the benchmarks in the
+    // card repo). `install-hooks` alone installs the machinery inert;
+    // `install-hooks --inject` enables injection for every subagent.
+    const conInyeccion = process.argv.includes('--inject');
+    const hookCmd = (conInyeccion ? 'CRBRO_SUBAGENT_INJECT=full ' : '') + `node "${hookScript.split('\\').join('/')}"`;
 
     let settings = {};
     try {
@@ -431,7 +437,12 @@ if (command === 'init') {
     const list = settings.hooks.SubagentStart = settings.hooks.SubagentStart || [];
     const yaEsta = JSON.stringify(list).includes('crbro-subagent');
     if (yaEsta) {
-      console.log('  ✅ SubagentStart hook already installed. Nothing to do.');
+      console.log('  ✅ SubagentStart hook already installed. Script refreshed.');
+      if (conInyeccion && !JSON.stringify(list).includes('CRBRO_SUBAGENT_INJECT')) {
+        console.log('     ⚠️  The installed entry does NOT enable injection. To enable it,');
+        console.log('     remove the SubagentStart entry from settings.json and re-run');
+        console.log('     install-hooks --inject.');
+      }
       return;
     }
     list.push({
@@ -448,9 +459,17 @@ if (command === 'init') {
     fs.renameSync(tmp, settingsPath);
     console.log('  ✅ SubagentStart hook installed.');
     console.log(`     ${settingsPath}`);
-    console.log('     Every Task-spawned subagent now receives the same behavioral');
-    console.log('     protocols the session boots with. Scope it with the');
-    console.log('     CRBRO_SUBAGENT_MATCHER env var (regex on agent_type) if needed.');
+    if (conInyeccion) {
+      console.log('     Injection ENABLED: every Task-spawned subagent receives the');
+      console.log('     protocol block. Scope it with CRBRO_SUBAGENT_MATCHER (regex on');
+      console.log('     agent_type) if needed. Measured caveat: on small models the');
+      console.log('     block bought no benchmarked benefit and induced fabricated');
+      console.log('     compliance in some runs — see the benchmarks before scoping.');
+    } else {
+      console.log('     Injection is OPT-IN and currently OFF (the measured default:');
+      console.log('     three clean benchmark runs found no benefit in any model and');
+      console.log('     harm in small ones). Re-run with --inject to enable it.');
+    }
   }).catch(console.error);
 
 } else if (command === '--help' || command === '-h') {

package/dist/engine/cortex.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"cortex.d.ts","sourceRoot":"","sources":["../../src/engine/cortex.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,MAAM,EAAE,UAAU,EAAkB,UAAU,EAAE,MAAM,mBAAmB,CAAC;AA2DxF,MAAM,MAAM,OAAO,GAAG,CAAC,MAAM,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC;AAE/D;;;;GAIG;AACH,MAAM,MAAM,OAAO,GAAG,CACpB,QAAQ,EAAE,MAAM,EAChB,MAAM,EACF;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAC;IAAC,GAAG,CAAC,EAAE,MAAM,CAAA;CAAE,GACnF;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,YAAY,GAAG,WAAW,CAAC;IAAC,EAAE,EAAE,MAAM,CAAC;IAAC,GAAG,CAAC,EAAE,MAAM,CAAA;CAAE,GACzF;IAAE,IAAI,EAAE,UAAU,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,CAAC,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GAC5D;IAAE,IAAI,EAAE,SAAS,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GAC7C;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GAC3C;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GAC1C;IAAE,IAAI,EAAE,KAAK,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GACzC;IAAE,IAAI,EAAE,aAAa,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,GAChD;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,MAAM,CAAA;CAAE,KAChD,OAAO,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC;AAE1B,qBAAa,MAAM;IAaL,OAAO,CAAC,KAAK;IAZzB;;;;;OAKG;IACH,OAAO,CAAC,OAAO,CAAwB;IACvC,OAAO,CAAC,OAAO,CAAwB;IAEvC,2EAA2E;IAC3E,OAAO,CAAC,KAAK,CAAyD;gBAElD,KAAK,EAAE,KAAK;IAEhC,yEAAyE;IACzE,YAAY,IAAI;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,EAAE,CAAA;KAAE;IAQtE,iBAAiB,IAAI,IAAI;IAIzB,UAAU,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,GAAG,IAAI;IAIzC,UAAU,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,GAAG,IAAI;YAI3B,IAAI;IAUlB;;;;OAIG;IACG,eAAe,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;YAoBxC,OAAO;IASrB;;OAEG;IACG,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAW7C;;OAEG;IACG,IAAI,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAI9C;;;;;;;;;;;OAWG;IACG,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IA6CtD;;;;OAIG;IACG,MAAM,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;IAwC/F;;;OAGG;IACG,KAAK,CACT,KAAK,EAAE,MAAM,EACb,IAAI,EAAE,MAAM,GAAG,UAAU,GAAG,SAAS,GAAG,YAAY,GAAG,OAAO,GAAG,MAAM,EACvE,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE;QACR,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,UAAU,CAAC,EAAE,UAAU,CAAC;QACxB,oEAAoE;QACpE,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,8DAA8D;QAC9D,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,wDAAwD;QACxD,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;QACtB;;;;;;WAMG;QACH,eAAe,CAAC,EAAE,OAAO,CAAC;KAC3B,GACA,OAAO,CAAC;QACT,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;QACtB,MAAM,EAAE,SAAS,GAAG,SAAS,GAAG,SAAS,CAAC;QAC1C,UAAU,EAAE,MAAM,CAAC;QACnB,8EAA8E;QAC9E,oBAAoB,EAAE,MAAM,EAAE,CAAC;QAC/B;;;;;WAKG;QACH,eAAe,EAAE,KAAK,CAAC;YAAE,EAAE,EAAE,MAAM,CAAC;YAAC,UAAU,EAAE,MAAM,CAAC;YAAC,OAAO,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;QAC5E,QAAQ,EAAE,MAAM,EAAE,CAAC;KACpB,CAAC;IAyJF;;;;;;;;OAQG;IACG,MAAM,CACV,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,EAAE,EACjB,OAAO,CAAC,EAAE;QAAE,MAAM,CAAC,EAAE,UAAU,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAC;QAAC,UAAU,CAAC,EAAE,MAAM,CAAA;KAAE,GACpE,OAAO,CAAC;QAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;IA6C3E;;;;;;;;OAQG;IACH,OAAO,CAAC,kBAAkB;IA2B1B;;;;;;;OAOG;IACH,OAAO,CAAC,MAAM;IAgCd;;;;;;;OAOG;IACG,MAAM,CACV,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE;QAAE,MAAM,CAAC,EAAE,MAAM,CAAC;QAAC,UAAU,CAAC,EAAE,UAAU,CAAA;KAAE,GACrD,OAAO,CAAC;QAAE,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,MAAM,EAAE,SAAS,GAAG,SAAS,CAAC;QAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;IAwCxF;;OAEG;IACG,IAAI,CAAC,OAAO,CAAC,EAAE;QACnB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,IAAI,CAAC,EAAE,UAAU,CAAC;QAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC,KAAK,CAAC;QAChB,EAAE,EAAE,MAAM,CAAC;QACX,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,UAAU,CAAC;QACjB,IAAI,EAAE,MAAM,CAAC;QACb,aAAa,EAAE,MAAM,CAAC;QACtB,WAAW,EAAE,MAAM,CAAC;KACrB,CAAC,CAAC;IAwCH;;OAEG;IACG,aAAa,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAYxE;;OAEG;IACG,OAAO,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAajE;;;;;;;OAOG;IACG,MAAM,CACV,SAAS,EAAE,MAAM,EACjB,OAAO,EAAE,MAAM,EAAE,GAChB,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAA;KAAE,CAAC;IA2GhF;;;OAGG;IACG,YAAY,IAAI,OAAO,CAAC,KAAK,CAAC;QAClC,SAAS,EAAE,MAAM,CAAC;QAClB,IAAI,EAAE,MAAM,CAAC;QACb,KAAK,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,EAAE,MAAM,CAAC;QACd,SAAS,EAAE,MAAM,CAAC;QAClB,QAAQ,EAAE,MAAM,CAAC;QACjB,WAAW,EAAE,MAAM,CAAC;QACpB,MAAM,EAAE,MAAM,CAAC;QACf,KAAK,EAAE,MAAM,CAAC;QACd,GAAG,EAAE,MAAM,CAAC;KACb,CAAC,CAAC;IA8CH;;OAEG;IACG,MAAM,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;IAIjC;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,MAAM,CAAC;CAI/B"}

package/dist/engine/cortex.js

@@ -246,6 +246,7 @@ class Cortex {
                 tags: [],
                 errors: [],
                 debts: [],
+                entry_dates: {},
             };
         });
         if (creada) {
@@ -292,6 +293,13 @@ class Cortex {
         // From here on we work on a fresh read inside the lock. Mutating the copy
         // fetched a moment ago and saving it over the top is exactly how a
         // concurrent writer's facts disappeared.
+        // Patterns, preferences, errors and debts are plain strings; their date
+        // lives in the entry_dates sidecar, keyed by content hash.
+        const fechar = (n, text) => {
+            if (!n.entry_dates)
+                n.entry_dates = {};
+            n.entry_dates[(0, ops_js_1.entryId)(text)] = (0, fs_js_1.now)();
+        };
         const actualizada = await (0, fs_js_1.updateJSON)(this.brain.paths.neuron(neuron.id), current => {
             const n = current || neuron;
             switch (type) {
@@ -343,13 +351,16 @@ class Cortex {
                 case 'pattern': {
                     if (!n.patterns.includes(content)) {
                         n.patterns.push(content);
+                        fechar(n, content);
                         emitir = { kind: 'pattern', text: content, at: (0, fs_js_1.now)() };
                     }
                     break;
                 }
                 case 'preference': {
-                    if (!n.preferences.includes(content))
+                    if (!n.preferences.includes(content)) {
                         n.preferences.push(content);
+                        fechar(n, content);
+                    }
                     break;
                 }
                 case 'error': {
@@ -357,6 +368,7 @@ class Cortex {
                         n.errors = [];
                     if (!n.errors.includes(content)) {
                         n.errors.push(content);
+                        fechar(n, content);
                         this.tally.topics.add(n.id);
                         emitir = { kind: 'error', text: content, at: (0, fs_js_1.now)() };
                     }
@@ -367,6 +379,7 @@ class Cortex {
                         n.debts = [];
                     if (!n.debts.includes(content)) {
                         n.debts.push(content);
+                        fechar(n, content);
                         this.tally.topics.add(n.id);
                         emitir = { kind: 'debt', text: content, at: (0, fs_js_1.now)() };
                     }
@@ -629,6 +642,11 @@ class Cortex {
                 return null;
             const antes = current.facts.length + current.decisions.length +
                 current.patterns.length + current.preferences.length;
+            // Dated entries before the removal, so their dates can go with them.
+            const fechadasAntes = [
+                ...current.patterns, ...current.preferences,
+                ...(current.errors || []), ...(current.debts || []),
+            ];
             current.facts = current.facts.filter(f => {
                 const fid = (f.id || (0, hash_js_1.factId)(f.text)).toLowerCase();
                 return !(wanted.includes(fid) || wanted.includes(f.text.trim().toLowerCase()));
@@ -655,6 +673,18 @@ class Cortex {
                 current.patterns.length + current.preferences.length) + (erroresAntes - (current.errors || []).length) + (deudasAntes - (current.debts || []).length) + mapaBorrado;
             if (removed === 0)
                 return null;
+            // Drop the dates of what left, so the sidecar never outlives its entry.
+            if (current.entry_dates) {
+                const quedan = new Set([
+                    ...current.patterns, ...current.preferences,
+                    ...(current.errors || []), ...(current.debts || []),
+                ].map(ops_js_1.entryId));
+                for (const t of fechadasAntes) {
+                    const k = (0, ops_js_1.entryId)(t);
+                    if (!quedan.has(k))
+                        delete current.entry_dates[k];
+                }
+            }
             current.last_accessed = (0, fs_js_1.now)();
             return current;
         });

package/dist/engine/cortex.js.map

@@ -1 +1 @@
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package/dist/engine/maintenance.d.ts

@@ -48,7 +48,9 @@ export declare class Maintenance {
         decisions_saved: number;
         topics_touched: number;
         total_neurons: number;
+        /** Synapses created or strengthened by THIS consolidation (implicit links). */
         synapses_updated: number;
+        total_synapses: number;
         session_logged: boolean;
     }>;
     /** "Referenced in: x.md" and "Mined from x.md" carry no information. */

package/dist/engine/maintenance.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"maintenance.d.ts","sourceRoot":"","sources":["../../src/engine/maintenance.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAGvD,MAAM,WAAW,iBAAiB;IAChC,gBAAgB,EAAE,MAAM,CAAC;IACzB,+DAA+D;IAC/D,iBAAiB,EAAE,MAAM,CAAC;IAC1B,mBAAmB,EAAE,MAAM,CAAC;IAC5B,wDAAwD;IACxD,iBAAiB,EAAE,MAAM,CAAC;IAC1B,kFAAkF;IAClF,kBAAkB,EAAE,MAAM,CAAC;IAC3B,eAAe,EAAE,MAAM,CAAC;IACxB,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAC3B,iBAAiB,EAAE,MAAM,CAAC;IAC1B,aAAa,EAAE,OAAO,CAAC;IACvB,iBAAiB,EAAE,OAAO,CAAC;IAC3B,oGAAoG;IACpG,WAAW,EAAE,MAAM,CAAC;IACpB,qBAAqB,EAAE,MAAM,CAAC;IAC9B,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,qBAAa,WAAW;IAEpB,OAAO,CAAC,KAAK;IACb,OAAO,CAAC,MAAM;IACd,OAAO,CAAC,QAAQ;IAChB,OAAO,CAAC,UAAU;IAClB,OAAO,CAAC,WAAW;IACnB,OAAO,CAAC,UAAU;IAClB,OAAO,CAAC,YAAY;gBANZ,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,WAAW,EAAE,WAAW,EACxB,UAAU,EAAE,UAAU,EACtB,YAAY,EAAE,YAAY;IAGpC;;OAEG;IACG,GAAG,CACP,MAAM,GAAE,OAAe,EACvB,OAAO,CAAC,EAAE;QAAE,OAAO,CAAC,EAAE,OAAO,CAAC;QAAC,gBAAgB,CAAC,EAAE,OAAO,CAAA;KAAE,GAC1D,OAAO,CAAC,iBAAiB,CAAC;IA8H7B;;OAEG;IACG,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QAC1C,WAAW,EAAE,MAAM,CAAC;QACpB,eAAe,EAAE,MAAM,CAAC;QACxB,cAAc,EAAE,MAAM,CAAC;QACvB,aAAa,EAAE,MAAM,CAAC;QACtB,gBAAgB,EAAE,MAAM,CAAC;QACzB,cAAc,EAAE,OAAO,CAAC;KACzB,CAAC;IAgDF,wEAAwE;IACxE,OAAO,CAAC,aAAa;YAIP,gBAAgB;YAUhB,gBAAgB;YAiBhB,kBAAkB;YAwBlB,gBAAgB;YAiBhB,cAAc;CAsB7B"}
+{"version":3,"file":"maintenance.d.ts","sourceRoot":"","sources":["../../src/engine/maintenance.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAC;AAC1C,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AAC5C,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,iBAAiB,CAAC;AAClD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAGvD,MAAM,WAAW,iBAAiB;IAChC,gBAAgB,EAAE,MAAM,CAAC;IACzB,+DAA+D;IAC/D,iBAAiB,EAAE,MAAM,CAAC;IAC1B,mBAAmB,EAAE,MAAM,CAAC;IAC5B,wDAAwD;IACxD,iBAAiB,EAAE,MAAM,CAAC;IAC1B,kFAAkF;IAClF,kBAAkB,EAAE,MAAM,CAAC;IAC3B,eAAe,EAAE,MAAM,CAAC;IACxB,gBAAgB,EAAE,MAAM,EAAE,CAAC;IAC3B,iBAAiB,EAAE,MAAM,CAAC;IAC1B,aAAa,EAAE,OAAO,CAAC;IACvB,iBAAiB,EAAE,OAAO,CAAC;IAC3B,oGAAoG;IACpG,WAAW,EAAE,MAAM,CAAC;IACpB,qBAAqB,EAAE,MAAM,CAAC;IAC9B,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB;AAED,qBAAa,WAAW;IAEpB,OAAO,CAAC,KAAK;IACb,OAAO,CAAC,MAAM;IACd,OAAO,CAAC,QAAQ;IAChB,OAAO,CAAC,UAAU;IAClB,OAAO,CAAC,WAAW;IACnB,OAAO,CAAC,UAAU;IAClB,OAAO,CAAC,YAAY;gBANZ,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,QAAQ,EAAE,QAAQ,EAClB,UAAU,EAAE,UAAU,EACtB,WAAW,EAAE,WAAW,EACxB,UAAU,EAAE,UAAU,EACtB,YAAY,EAAE,YAAY;IAGpC;;OAEG;IACG,GAAG,CACP,MAAM,GAAE,OAAe,EACvB,OAAO,CAAC,EAAE;QAAE,OAAO,CAAC,EAAE,OAAO,CAAC;QAAC,gBAAgB,CAAC,EAAE,OAAO,CAAA;KAAE,GAC1D,OAAO,CAAC,iBAAiB,CAAC;IA8H7B;;OAEG;IACG,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC;QAC1C,WAAW,EAAE,MAAM,CAAC;QACpB,eAAe,EAAE,MAAM,CAAC;QACxB,cAAc,EAAE,MAAM,CAAC;QACvB,aAAa,EAAE,MAAM,CAAC;QACtB,+EAA+E;QAC/E,gBAAgB,EAAE,MAAM,CAAC;QACzB,cAAc,EAAE,MAAM,CAAC;QACvB,cAAc,EAAE,OAAO,CAAC;KACzB,CAAC;IA0EF,wEAAwE;IACxE,OAAO,CAAC,aAAa;YAIP,gBAAgB;YAUhB,gBAAgB;YAiBhB,kBAAkB;YAwBlB,gBAAgB;YAiBhB,cAAc;CAsB7B"}

package/dist/engine/maintenance.js

@@ -143,12 +143,33 @@ class Maintenance {
         await this.searchEngine.persist();
         // Log session
         const neuronCount = await this.cortex.count();
-        const synapseCount = await this.synapses.count();
         // Real numbers, not the neuron count. `facts_saved` used to return the
         // total number of neurons, so it answered the same figure whether the
         // session had stored one fact or thirty — and it is the only number the
         // assistant sees when closing a session.
         const escrito = this.cortex.sessionTally();
+        // Implicit synapses: neurons written in the same session are related by
+        // that alone. Until 1.13 only crbro_connect created synapses, and nobody
+        // calls it — the reference brain had 14 synapses for 1,145 neurons, so
+        // the connectivity share of heat (25%) weighed nothing and the global map
+        // had no bridges. Links start weak (0.3), typed temporal, and never
+        // overwrite a context somebody wrote by hand; decay and pruning apply.
+        // Capped at six topics (15 pairs) so a sprawling session cannot wire
+        // everything to everything.
+        let synapsesTouched = 0;
+        const topicos = escrito.topics.slice(0, 6);
+        for (let i = 0; i < topicos.length; i++) {
+            for (let j = i + 1; j < topicos.length; j++) {
+                try {
+                    await this.synapses.connect(topicos[i], topicos[j], 'temporal', `written in the same session (${(0, fs_js_1.today)()})`, { initialStrength: 0.3, keepExistingContext: true });
+                    synapsesTouched++;
+                }
+                catch {
+                    // A missing neuron must not break the consolidation.
+                }
+            }
+        }
+        const synapseCount = await this.synapses.count();
         await this.hippocampus.logSession({
             summary,
             topics_touched: escrito.topics,
@@ -171,7 +192,8 @@ class Maintenance {
             decisions_saved: escrito.decisions,
             topics_touched: escrito.topics.length,
             total_neurons: neuronCount,
-            synapses_updated: synapseCount,
+            synapses_updated: synapsesTouched,
+            total_synapses: synapseCount,
             session_logged: true,
         };
     }

package/dist/engine/maintenance.js.map

@@ -1 +1 @@
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package/dist/engine/synapses.d.ts

@@ -6,7 +6,12 @@ export declare class Synapses {
     /**
      * Create or strengthen a synapse between two neurons.
      */
-    connect(fromId: string, toId: string, type: SynapseType, context?: string): Promise<{
+    connect(fromId: string, toId: string, type: SynapseType, context?: string, options?: {
+        /** Strength when the synapse is created (default 0.5). Implicit links start weaker. */
+        initialStrength?: number;
+        /** On strengthen, keep whatever context is already there instead of replacing it. */
+        keepExistingContext?: boolean;
+    }): Promise<{
         synapse: Synapse;
         action: 'created' | 'strengthened';
     }>;

package/dist/engine/synapses.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"synapses.d.ts","sourceRoot":"","sources":["../../src/engine/synapses.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,OAAO,EAAE,WAAW,EAAU,MAAM,mBAAmB,CAAC;AAEtE,qBAAa,QAAQ;IACP,OAAO,CAAC,KAAK;gBAAL,KAAK,EAAE,KAAK;IAEhC;;OAEG;IACG,OAAO,CACX,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,WAAW,EACjB,OAAO,CAAC,EAAE,MAAM,GACf,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,SAAS,GAAG,cAAc,CAAA;KAAE,CAAC;IAyCpE;;OAEG;IACG,cAAc,CAClB,QAAQ,EAAE,MAAM,EAChB,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC,KAAK,CAAC;QACf,SAAS,EAAE,MAAM,CAAC;QAClB,WAAW,EAAE,MAAM,CAAC;QACpB,IAAI,EAAE,WAAW,CAAC;QAClB,QAAQ,EAAE,MAAM,CAAC;QACjB,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC,CAAC;IAoCH;;OAEG;IACG,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC;IAKhE;;;OAGG;IACG,KAAK,CAAC,cAAc,GAAE,MAAa,GAAG,OAAO,CAAC,MAAM,CAAC;IAwC3D;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,MAAM,CAAC;YAOhB,qBAAqB;YAUrB,0BAA0B;CAOzC"}
+{"version":3,"file":"synapses.d.ts","sourceRoot":"","sources":["../../src/engine/synapses.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,YAAY,CAAC;AACxC,OAAO,KAAK,EAAE,OAAO,EAAE,WAAW,EAAU,MAAM,mBAAmB,CAAC;AAEtE,qBAAa,QAAQ;IACP,OAAO,CAAC,KAAK;gBAAL,KAAK,EAAE,KAAK;IAEhC;;OAEG;IACG,OAAO,CACX,MAAM,EAAE,MAAM,EACd,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,WAAW,EACjB,OAAO,CAAC,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE;QACR,uFAAuF;QACvF,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,qFAAqF;QACrF,mBAAmB,CAAC,EAAE,OAAO,CAAC;KAC/B,GACA,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAC;QAAC,MAAM,EAAE,SAAS,GAAG,cAAc,CAAA;KAAE,CAAC;IAyCpE;;OAEG;IACG,cAAc,CAClB,QAAQ,EAAE,MAAM,EAChB,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC,KAAK,CAAC;QACf,SAAS,EAAE,MAAM,CAAC;QAClB,WAAW,EAAE,MAAM,CAAC;QACpB,IAAI,EAAE,WAAW,CAAC;QAClB,QAAQ,EAAE,MAAM,CAAC;QACjB,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC,CAAC;IAoCH;;OAEG;IACG,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,GAAG,IAAI,CAAC;IAKhE;;;OAGG;IACG,KAAK,CAAC,cAAc,GAAE,MAAa,GAAG,OAAO,CAAC,MAAM,CAAC;IAwC3D;;OAEG;IACG,KAAK,IAAI,OAAO,CAAC,MAAM,CAAC;YAOhB,qBAAqB;YAUrB,0BAA0B;CAOzC"}

package/dist/engine/synapses.js

@@ -13,7 +13,7 @@ class Synapses {
     /**
      * Create or strengthen a synapse between two neurons.
      */
-    async connect(fromId, toId, type, context) {
+    async connect(fromId, toId, type, context, options) {
         const id = (0, ids_js_1.synapseId)(fromId, toId);
         let synapse = await (0, fs_js_1.readJSON)(this.brain.paths.synapse(id));
         let action;
@@ -22,7 +22,7 @@ class Synapses {
             synapse.strength = Math.min(1.0, synapse.strength + 0.1);
             synapse.co_access_count += 1;
             synapse.last_co_access = (0, fs_js_1.now)();
-            if (context) {
+            if (context && !(options?.keepExistingContext && synapse.context)) {
                 synapse.context = context;
             }
             action = 'strengthened';
@@ -32,7 +32,7 @@ class Synapses {
             synapse = {
                 id,
                 nodes: [fromId, toId],
-                strength: 0.5,
+                strength: options?.initialStrength ?? 0.5,
                 type,
                 context: context || '',
                 co_access_count: 1,

package/dist/engine/synapses.js.map

@@ -1 +1 @@
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package/dist/search/index.d.ts.map

@@ -1 +1 @@
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