coverme-scanner 1.6.0 → 1.7.0

package/dist/cli/index.js

@@ -32,10 +32,9 @@ program
     .action(scan_js_1.scan);
 program
     .command('report')
-    .description('Generate PDF/HTML report from scan JSON')
+    .description('Generate HTML report from scan JSON')
     .argument('[json-file]', 'Path to scan results JSON file (auto-detects if not provided)')
     .option('-o, --output <path>', 'Output file path')
-    .option('-f, --format <format>', 'Output format: pdf, html', 'pdf')
     .action(async (jsonFile, options) => {
     let targetFile = jsonFile;
     // Auto-detect scan.json if not provided
@@ -67,7 +66,7 @@ program
             process.exit(1);
         }
     }
-    await (0, index_js_1.generateReport)(targetFile, options.output, options.format || 'pdf');
+    await (0, index_js_1.generateReport)(targetFile, options.output);
 });
 // Agent management commands
 const agentCmd = program

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/prompts/orchestration.md

@@ -13,14 +13,17 @@ Before scanning, understand what you're scanning and gather statistics:
 ### Step 1: Gather Project Statistics
 
 ```bash
+# List ALL top-level directories (excluding hidden, node_modules, dist, build)
+ls -d */ 2>/dev/null | grep -v -E '^(node_modules|dist|build|\.)/
+
 # Count files and lines of code
 find . -type f \( -name "*.ts" -o -name "*.js" -o -name "*.tsx" -o -name "*.jsx" -o -name "*.py" -o -name "*.go" -o -name "*.java" -o -name "*.rb" -o -name "*.php" -o -name "*.cs" -o -name "*.swift" -o -name "*.kt" \) -not -path "*/node_modules/*" -not -path "*/.git/*" -not -path "*/dist/*" -not -path "*/build/*" -not -path "*/__pycache__/*" | wc -l
 
 # Count lines of code (approximate)
 find . -type f \( -name "*.ts" -o -name "*.js" -o -name "*.tsx" -o -name "*.jsx" -o -name "*.py" -o -name "*.go" \) -not -path "*/node_modules/*" -not -path "*/.git/*" -not -path "*/dist/*" 2>/dev/null | head -100 | xargs wc -l 2>/dev/null | tail -1
 
-# Generate project tree (max 3 levels deep, exclude node_modules etc)
-find . -maxdepth 3 -type d -not -path "*/node_modules/*" -not -path "*/.git/*" -not -path "*/dist/*" -not -path "*/__pycache__/*" | head -30 | sort
+# Generate project tree (2 levels deep)
+find . -maxdepth 2 -type d -not -path "*/node_modules/*" -not -path "*/.git/*" -not -path "*/dist/*" -not -path "*/__pycache__/*" -not -path "*/build/*" | sort
 ```
 
 ### Step 2: Read Project Info
@@ -47,7 +50,7 @@ Include these statistics in the final report:
     "stack": ["Node.js", "TypeScript", "React", "PostgreSQL", "Redis"],
     "purpose": "1-2 sentence description of what this project does",
     "architecture": "Monolith | Microservices | Serverless | Hybrid",
-    "keyComponents": ["auth service", "payment processing", "AI chat", "etc"]
+    "keyComponents": ["backend-api/", "frontend/", "services/", "packages/", "etc"]
   }
 }
 ```
@@ -56,10 +59,43 @@ Include these statistics in the final report:
 - `filesScanned` - Count of source code files analyzed (not node_modules/dist)
 - `linesOfCode` - Total lines in source files (approximate is fine)
 - `projectTree` - ASCII tree representation of main directories (use tree format with ├── and └──)
+- `keyComponents` - **MUST include ALL top-level directories** containing source code. Do NOT skip any directory. List every folder from `ls -d */` excluding node_modules/dist/build/.git
 
 This context helps readers understand the security findings in context.
 
-### Step 3: Check for Runtime Verification (SSH)
+### Step 3: Check for Previous Scan Results
+
+```bash
+cat .coverme/scan.json 2>/dev/null | head -5 || echo "NO_PREVIOUS_SCAN"
+```
+
+**IF previous scan.json exists:**
+- Load previous findings to track what was resolved since the last scan
+- Compare current findings against previous findings
+- Any finding from previous scan NOT found in current scan = "Previously Resolved"
+- Include a `previouslyResolved` array in the final output showing what was fixed
+- This builds trust and shows security progress over time
+
+**Format for previously resolved:**
+```json
+{
+  "id": "PREV-001",
+  "title": "Original finding title from previous scan",
+  "originalSeverity": "critical|high|medium|low",
+  "resolution": "How it was fixed — be specific: 'Replaced string concatenation with parameterized queries via Prisma ORM. Verified no raw SQL remains.'",
+  "resolvedDate": "Date of current scan"
+}
+```
+
+**Example Previously Resolved section (from Officely report):**
+- "DuckDB SQL Injection (was CRITICAL) — Resolved: enable_external_access=false sandbox + comprehensive SQL validation blocklist."
+- "Admin API Fail-Open (was HIGH) — Resolved: Binds to 127.0.0.1, fail-closed when no ADMIN_ALLOWED_IPS. Three-layer defense."
+- "Redis KEYS in Production (was HIGH) — Resolved: All paths now use SCAN via cursor-based scanKeys()."
+
+**IF NO previous scan:**
+- Skip — set `previouslyResolved` to empty array `[]`
+
+### Step 4: Check for Runtime Verification (SSH)
 
 ```bash
 cat .coverme/runtime.json 2>/dev/null || echo "NO_RUNTIME_CONFIG"
@@ -83,20 +119,22 @@ Every finding MUST include ALL these fields for the report to work:
 ```json
 {
   "id": "PREFIX-XXX",
-  "title": "Short descriptive title",
+  "title": "Descriptive title specific to the exact vulnerability (NOT generic category labels)",
   "severity": "critical|high|medium|low|info",
   "category": "Category name",
   "file": "exact/path/to/file.ts",
   "line": 123,
+  "endLine": 156,
   "code": "the vulnerable/problematic code snippet",
-  "description": "What is wrong - the specific problem found",
+  "description": "Precise technical narrative: what function has the issue, how it manifests, why it's dangerous. Include DREAD-D score inline for HIGH/CRITICAL.",
   "impact": "Security impact - what an attacker could exploit, potential damage, real-world risk",
   "attackChain": "Step-by-step exploitation: 1. Attacker does X, 2. System responds with Y, 3. Attacker gains Z",
-  "recommendation": "Exact steps to fix this issue with code example if applicable",
+  "recommendation": "Immediately actionable: specific function names, specific patterns, specific code changes",
   "cwe": "CWE-XXX (if applicable)",
   "confidence": 85,
   "fixOwner": "developer|devops|architect",
   "fixType": "code|config|infrastructure|design",
+  "crossReferences": ["OTHER-ID-1"],
   "dread": {
     "damage": 8,
     "reproducibility": 9,
@@ -138,8 +176,92 @@ Calculate DREAD score (1-10 for each, average for final score):
 - 3.0-4.9 = LOW (backlog)
 - 1.0-2.9 = INFO (document only)
 
+## PROFESSIONAL WRITING STANDARDS
+
+**Every finding must read as if written by an experienced security consultant, not a generic scanner.**
+
+### Title Quality
+Titles must be descriptive and specific to the exact vulnerability — not generic category labels.
+
+**BAD (generic):**
+- "Hardcoded credentials found"
+- "Missing input validation"
+- "XSS vulnerability"
+
+**GOOD (descriptive, specific to the code):**
+- "Hardcoded Tracker API Keys and Hash Salts in Helm Values"
+- "Attestation Fallback Accepts Unverified Enclave Keys"
+- "Credit Deduction After GPU Processing in Non-Streaming Path"
+- "Command Injection via Unvalidated Model Name in pm2 delete"
+
+### Description Quality
+Descriptions must trace the exact technical flow: what function, what input, what happens, and what the consequence is — in ONE precise paragraph.
+
+**BAD (vague):**
+"There is a security issue with hardcoded credentials in the configuration file. This could allow unauthorized access."
+
+**GOOD (precise technical narrative):**
+"Staging and production Helm values contain hardcoded API keys (stg-tracker-api-key, prd-tracker-api-key) and hash salts in plaintext, committed to version control. Anyone with repo access can write arbitrary data to the tracker. DREAD-D: 6.5."
+
+**GOOD (traces the full attack flow):**
+"When the attestation bundle endpoint is unavailable, fetchEnclaveInfo() falls back to the legacy /api/v1/enclave endpoint and stores keys with keysVerified: false. The browser silently proceeds to encrypt messages with public keys that have not been cryptographically bound to hardware attestation — enabling a man-in-the-middle attack by a compromised gateway."
+
+**GOOD (explains business logic flaw):**
+"In the non-streaming path, credit deduction happens after the enclave has processed the request. A concurrent request could deplete credits between the pre-flight check and the deduction, consuming GPU resources without payment. The streaming path handles this correctly."
+
+### Recommendation Quality
+Recommendations must be immediately actionable — specific function names, specific patterns, specific code.
+
+**BAD:**
+"Fix the hardcoded credentials"
+"Add input validation"
+
+**GOOD:**
+"Move to AWS Secrets Manager alongside existing KP_SECRETS_PATH pattern. Remove from version control. Rotate immediately."
+"Extract to trackRedisMetrics(redis, models, userIdentifier) and call from both paths."
+"Move validation to the top of startModels(). Apply in stopModels(). Use execFileAsync('pm2', ['delete', model])."
+"Validate against whitelist from models.json or restrict to ^[a-zA-Z0-9_-]+$."
+
+### Cross-Referencing
+When multiple agents identify the same issue from different perspectives, MERGE them using dual IDs:
+- "CR-02 / T-EKS-3: Hardcoded Tracker API Keys and Hash Salts in Helm Values"
+- "T-EKS-4 / CR-18: User Identity Logged and Hash Truncated to 64 Bits"
+- "T-BFF-3 / CR-08: Error Details Leaked to Clients"
+
+This shows the issue was found independently from multiple angles, increasing confidence.
+
+### Quantitative Precision
+Always include specific numbers when available:
+- Line counts: "160 lines of Redis metrics tracking code is duplicated verbatim"
+- Percentages: "5.3% of the codebase"
+- Bit lengths: "truncates SHA-256 to only 16 hex characters (64 bits)"
+- Specific values: "session timeout of 24h", "maxAge: 31536000"
+
+### DREAD Score Inline
+For HIGH and CRITICAL findings, include the DREAD-D score directly in the description text: "DREAD-D: 6.3."
+
+### Positive Observations Depth
+Positive observations must cite specific technical evidence, not generic praise.
+
+**BAD:**
+"Good authentication implementation"
+
+**GOOD:**
+"Zero-Knowledge Architecture — EKS gateway genuinely never sees plaintext. Encrypted payloads flow through without decryption. Well-enforced across all components."
+"Atomic Credit Operations — Lua scripts for token burning and balance deduction prevent cross-pod race conditions. Check-and-deduct is atomic."
+"Secure File Handling — MIME + magic number validation, memory-only storage, size limits. secureDeleteFile() overwrites with random data before deletion."
+
+---
+
 ## FIELD GUIDELINES
 
+### description (REQUIRED — PROFESSIONAL QUALITY)
+Write a precise technical narrative explaining:
+1. **What** specific function/file/pattern has the issue
+2. **How** the vulnerability manifests (trace the data flow)
+3. **Why** it's dangerous (the consequence in one clause)
+4. Include DREAD-D score inline for HIGH/CRITICAL: "DREAD-D: 6.5."
+
 ### impact (REQUIRED)
 Explain the real-world security impact. Be specific about:
 - What an attacker could do (e.g., "steal session tokens", "access other users' data")
@@ -148,6 +270,13 @@ Explain the real-world security impact. Be specific about:
 
 Example: "An attacker could inject malicious scripts that steal session cookies, enabling full account takeover of any logged-in user"
 
+### recommendation (REQUIRED — ACTIONABLE)
+Must include at least one of:
+- Specific function/method name to create or modify
+- Specific configuration change with exact values
+- Specific library/pattern to use
+- Code snippet showing the fix
+
 ---
 
 ## PHASE 1: PARALLEL DISCOVERY
@@ -1212,36 +1341,52 @@ Output findings with proper fixOwner:
 
 ### AGENT 20: Executive Summary Generator (ID prefix: EXEC)
 
-After all other agents complete, generate an executive summary.
+After all other agents complete, generate an executive summary **written for leadership** — technically precise but accessible.
+
+**WRITING GUIDELINES:**
+- The `overview` field should read like a professional security consultant's opening paragraph
+- Start with 1 sentence describing what the project IS (architecture, purpose)
+- Then state the overall security posture clearly
+- Then list the most significant remaining issues in one sentence
+- Use specific numbers and technical details, not vague language
+
+**EXAMPLE of professional executive summary overview:**
+"Express-AI Officely is a confidential AI platform built on a three-tier encrypted architecture: a Next.js frontend with BFF pattern, an Express.js API gateway on EKS, and backend enclaves running inside AMD SEV-SNP encrypted VMs. No critical vulnerabilities remain. The most significant remaining issues are: unauthenticated enclave registration endpoints that could allow enclave impersonation (mitigated by network-level whitelisting), hardcoded secrets in Helm values, a monolithic 1000+ line chat handler creating maintenance risk, 3,200 lines of dead or duplicated code (5.3% of the codebase), and zero test coverage across all components."
+
+**TOP RISKS writing quality:**
+Each risk must be a specific, actionable description — not a generic category.
+- BAD: "SQL injection vulnerability"
+- GOOD: "Unauthenticated enclave registration endpoints could allow impersonation (mitigated by network whitelisting)"
+- GOOD: "160 lines of Redis metrics tracking duplicated verbatim between streaming/non-streaming paths"
 
 **OUTPUT FORMAT:**
 ```json
 {
   "executiveSummary": {
-    "headline": "3 Critical + 5 High findings require immediate attention",
+    "headline": "0 Critical + 7 High findings — platform hardened but key gaps remain",
     "riskLevel": "HIGH",
+    "overview": "Professional 2-3 sentence summary as described above.",
     "topRisks": [
-      "SQL injection in user search allows database access",
-      "Missing rate limiting enables brute force attacks",
-      "Admin API exposed without IP restriction"
+      "Specific risk description with technical detail and context",
+      "Another risk with file reference and impact quantification",
+      "Third risk with mitigation status noted if partial"
     ],
     "positives": [
-      "Authentication flow is well-implemented",
-      "Input validation using Zod on most endpoints",
-      "Good use of parameterized queries in core modules"
+      "Specific strength with technical evidence — not generic praise",
+      "Another strength citing specific libraries/patterns/algorithms"
     ],
     "recommendedActions": [
       {
         "priority": 1,
-        "action": "Fix SQL injection in src/search.ts",
-        "owner": "developer",
-        "effort": "1-2 hours"
+        "action": "Remove hardcoded secrets from Helm values. Move to Secrets Manager. Rotate keys immediately.",
+        "owner": "devops",
+        "effort": "2-4 hours"
       },
       {
         "priority": 2,
-        "action": "Add NetworkPolicy for admin endpoints",
-        "owner": "devops",
-        "effort": "30 minutes"
+        "action": "Add shared-secret or mTLS auth to enclave status/register endpoints",
+        "owner": "architect",
+        "effort": "1-2 days"
       }
     ],
     "byOwner": {
@@ -1564,16 +1709,61 @@ Output:
 
 ---
 
+## PHASE 5: CROSS-REFERENCE MERGE
+
+Before generating final output, identify findings that describe the same issue from different agent perspectives.
+
+**Merge Process:**
+1. Compare all findings from Phase 1-4
+2. If two findings reference the same file+line range OR describe the same root cause:
+   - Create a SINGLE finding with dual ID: "CR-02 / T-EKS-3"
+   - Use the most descriptive title from either finding
+   - Combine description details from both perspectives
+   - Use the higher DREAD score
+   - Populate `crossReferences` with both original IDs
+3. If findings are RELATED but NOT identical:
+   - Keep as separate findings
+   - Add each other's ID to `crossReferences` array
+
+**Examples of cross-referenced findings:**
+- Security agent finds hardcoded key + Infrastructure agent finds same key in Helm values → MERGE
+- Auth agent finds missing MFA + Business logic agent finds MFA bypass → ADD crossReferences
+- Quality agent finds DRY violation in metrics code + Security agent finds same code → MERGE
+
+---
+
 ## PHASE 6: POSITIVE OBSERVATIONS
 
-Scan for good practices to include in the report:
-- Security controls that work well
-- Good patterns (input validation, parameterized queries)
-- Proper error handling
-- Good test coverage areas
-- Well-implemented auth flows
+Scan for good practices to include in the report. Each positive observation must include **specific technical evidence** — not generic praise.
+
+**FORMAT for each observation:**
+```json
+{
+  "title": "Descriptive Title — 3-5 words",
+  "description": "2-3 sentences of specific technical evidence. Name the specific functions, libraries, patterns, or configurations that demonstrate this strength. Include file references where relevant."
+}
+```
+
+**BAD (generic, no evidence):**
+- "Good authentication implementation"
+- "Proper input validation"
+- "Secure coding practices"
 
-Output as list of strings.
+**GOOD (specific, with evidence):**
+- {"title": "Zero-Knowledge Architecture", "description": "EKS gateway genuinely never sees plaintext. Encrypted payloads flow through without decryption. Well-enforced across all components."}
+- {"title": "Atomic Credit Operations", "description": "Lua scripts for token burning and balance deduction prevent cross-pod race conditions. Check-and-deduct is atomic."}
+- {"title": "Post-Quantum Cryptography", "description": "XWing (ML-KEM-768 + X25519) hybrid KEM, Ed25519 signing, AES-256-GCM. Key derivation: Argon2id + HKDF with proper alignment across browser/Node.js."}
+- {"title": "Secure File Handling", "description": "MIME + magic number validation, memory-only storage, size limits. secureDeleteFile() overwrites with random data before deletion."}
+
+**CHECK FOR:**
+- Security controls that work well (name the specific middleware, library, or pattern)
+- Authentication/authorization strengths (name the provider, flow, and protections)
+- Input validation patterns (name the library and coverage)
+- Cryptographic implementations (name algorithms, key sizes, modes)
+- Architecture strengths (name the pattern and why it's secure)
+- Operational security (logging, monitoring, incident response)
+
+Output as array of objects with `title` and `description` fields.
 
 ---
 
@@ -1635,20 +1825,23 @@ The final report should ONLY contain findings that are:
   "executiveSummary": {
     "headline": "3 Critical + 5 High findings require immediate attention",
     "riskLevel": "CRITICAL | HIGH | MEDIUM | LOW",
+    "overview": "A 2-3 sentence executive summary of the project architecture AND the overall security posture, written for leadership. Example: 'Express-AI Officely is a confidential AI platform built on a three-tier encrypted architecture. No critical vulnerabilities remain. The most significant remaining issues are: unauthenticated registration endpoints, hardcoded secrets in Helm values, and zero test coverage.'",
     "topRisks": [
-      "SQL injection in user search allows database access",
-      "Missing rate limiting enables brute force attacks"
+      "Unauthenticated enclave registration endpoints could allow impersonation (mitigated by network whitelisting)",
+      "Hardcoded API keys and hash salts in Helm values committed to version control",
+      "160 lines of Redis metrics tracking duplicated verbatim between streaming/non-streaming paths"
     ],
     "positives": [
-      "Authentication flow is well-implemented",
-      "Good use of parameterized queries"
+      "Zero-knowledge architecture — gateway never sees plaintext",
+      "Atomic credit operations via Lua scripts prevent race conditions",
+      "Post-quantum cryptography with XWing hybrid KEM"
     ],
     "recommendedActions": [
       {
         "priority": 1,
-        "action": "Fix SQL injection in src/search.ts",
-        "owner": "developer",
-        "effort": "1-2 hours"
+        "action": "Remove hardcoded secrets from Helm values. Move to Secrets Manager. Rotate keys.",
+        "owner": "devops",
+        "effort": "2-4 hours"
       }
     ],
     "byOwner": {
@@ -1764,23 +1957,29 @@ The final report should ONLY contain findings that are:
         "type": "delete",
         "file": "src/utils/oldHelpers.ts",
         "lines": 250,
-        "description": "Entire file is dead code - functions never called",
-        "reason": "No imports found in codebase"
+        "title": "Dead utility functions — no callers in codebase",
+        "description": "Entire file is dead code — functions never called. No imports found anywhere.",
+        "reason": "No imports found in codebase",
+        "roi": "~250 lines"
       },
       {
         "type": "delete",
         "file": "src/legacy/auth.js",
         "lines": 180,
-        "description": "Legacy auth implementation replaced by Clerk",
-        "reason": "Migration completed 6 months ago"
+        "title": "Legacy auth replaced by Clerk integration",
+        "description": "Legacy auth implementation replaced by Clerk. Migration completed 6 months ago.",
+        "reason": "Migration completed 6 months ago",
+        "roi": "~180 lines"
       }
     ],
     "mergeItems": [
       {
         "type": "merge",
         "file": "src/utils/validate.ts, src/helpers/validation.ts",
-        "description": "Two files with overlapping validation functions",
-        "reason": "DRY violation - consolidate into single module"
+        "title": "Duplicate validation modules",
+        "description": "Two files with overlapping validation functions — same Zod schema patterns duplicated",
+        "reason": "DRY violation — consolidate into single module",
+        "roi": "~120 lines"
       }
     ],
     "simplifyItems": [
@@ -1788,8 +1987,10 @@ The final report should ONLY contain findings that are:
         "type": "simplify",
         "file": "src/services/payment.ts",
         "lines": 450,
-        "description": "Overly complex payment flow with excessive error handling",
-        "reason": "Can be reduced to ~200 lines with proper abstraction"
+        "title": "Overly complex payment handler — 450 lines",
+        "description": "Single function handles parsing, validation, processing, and error recovery with deeply nested try/catch blocks",
+        "reason": "Split into paymentValidator, paymentProcessor, paymentErrorHandler — reduce to ~200 lines",
+        "roi": "~250 lines reducible"
       }
     ],
     "totalLinesRemovable": 680,
@@ -1918,19 +2119,29 @@ The final report should ONLY contain findings that are:
   "positiveObservations": [
     {
       "title": "Strong Authentication Implementation",
-      "description": "Clerk integration with proper session management, MFA support, and secure cookie settings"
+      "description": "Clerk integration with proper session management, MFA support, and secure cookie settings. All tokens kept server-side. httpOnly + secure cookies with SameSite=strict."
     },
     {
       "title": "Comprehensive Input Validation",
-      "description": "Zod schemas used consistently across API endpoints with proper error handling"
+      "description": "Zod schemas used consistently across 15+ API endpoints with proper error handling. Schema-first validation prevents malformed input from reaching business logic."
     },
     {
       "title": "Secure Database Access",
-      "description": "Prisma ORM with parameterized queries, preventing SQL injection in core modules"
+      "description": "Prisma ORM with parameterized queries throughout. Zero raw SQL queries found. Prevents SQL injection across all database operations."
     },
     {
       "title": "Good Error Handling Patterns",
-      "description": "Errors are caught and logged without exposing internal details to clients"
+      "description": "Custom AppError class with error codes. Internal details logged server-side only. Generic messages returned to clients. Consistent format across routes."
+    }
+  ],
+
+  "previouslyResolved": [
+    {
+      "id": "PREV-001",
+      "title": "SQL Injection in search endpoint",
+      "originalSeverity": "critical",
+      "resolution": "Parameterized queries implemented using Prisma ORM. Verified no raw SQL remains.",
+      "resolvedDate": "2026-01-15"
     }
   ],