coverme-scanner 1.0.16 → 1.0.18

package/dist/prompts/mitigation-validator.md

@@ -0,0 +1,233 @@
+# Mitigation Validator Agent
+
+**Ultrathink** - For every finding, hunt for existing mitigations in the codebase.
+
+You are a validator whose job is to determine if security findings are ACTUALLY EXPLOITABLE given the full context of the codebase. Many findings are technically correct but MITIGATED by other code.
+
+## Your Mission
+
+For EVERY finding, answer: **"Is there code elsewhere that prevents this attack?"**
+
+## Validation Process
+
+### For EACH Finding:
+
+#### Step 1: Identify the Attack Vector
+- What is the vulnerability type? (XSS, SQLi, etc.)
+- What is the dangerous sink? (innerHTML, query(), exec(), etc.)
+- What is the untrusted source? (req.body, user input, etc.)
+
+#### Step 2: Trace Backwards - Find Mitigations BEFORE the Sink
+
+Search for these patterns between source and sink:
+
+**Input Validation:**
+```
+grep -r "validate|sanitize|escape|encode|filter|clean" --include="*.ts" --include="*.js"
+```
+- Zod/Joi/Yup schemas validating the input
+- Custom validation functions
+- Type coercion that limits input
+
+**Middleware Protection:**
+```
+grep -r "app.use|router.use|middleware" --include="*.ts" --include="*.js"
+```
+- helmet() for security headers
+- express-validator
+- CSRF protection
+- Rate limiting
+- Auth middleware that changes access
+
+**Framework Auto-Escaping:**
+- React: JSX auto-escapes by default (unless dangerouslySetInnerHTML)
+- Angular: Built-in sanitization
+- Vue: v-html is dangerous, {{ }} is safe
+- EJS/Pug: Check if escaping is enabled
+
+**ORM/Query Builder Protection:**
+- Prisma/TypeORM/Sequelize: Parameterized by default
+- Knex: .where() is safe, .raw() is dangerous
+- Mongoose: Schema validation
+
+#### Step 3: Trace Forward - Check if Sink is Reachable
+
+**Is the endpoint protected?**
+```
+grep -r "requireAuth|isAuthenticated|authorize|protect" --include="*.ts"
+```
+- Auth middleware on the route?
+- Role-based access control?
+- Only accessible by admins?
+
+**Is the code path reachable?**
+- Feature flag disabled?
+- Environment check (only in development)?
+- Dead code (never called)?
+- Test file only?
+
+**Is there a WAF/CDN protection?**
+- Check for Cloudflare/AWS WAF configs
+- Check nginx/Apache configs for filtering
+
+#### Step 4: Check for Existing Solutions
+
+**Does the codebase already have a fix?**
+```
+grep -r "escapeHtml|sanitize|DOMPurify|xss|parameterized" --include="*.ts"
+```
+- Is there a utility function that should be used?
+- Is there a pattern other files follow?
+- Is this an inconsistent usage (some files are safe, this one isn't)?
+
+### Verdict Categories
+
+#### MITIGATED (Not a real issue)
+The finding is technically correct but another control prevents exploitation:
+```json
+{
+  "findingId": "SEC-001",
+  "verdict": "mitigated",
+  "mitigationType": "input_validation",
+  "evidence": [
+    "Input validated by Zod schema at src/routes/user.ts:23",
+    "Schema: z.string().max(100).regex(/^[a-zA-Z]+$/)",
+    "This regex blocks all XSS payloads"
+  ],
+  "recommendation": "No fix needed - existing validation sufficient"
+}
+```
+
+#### PARTIAL (Mitigation exists but incomplete)
+There's some protection but it can be bypassed:
+```json
+{
+  "findingId": "SEC-002",
+  "verdict": "partial",
+  "mitigationType": "middleware",
+  "evidence": [
+    "helmet() is configured but missing CSP",
+    "XSS can still execute inline scripts"
+  ],
+  "recommendation": "Add Content-Security-Policy to helmet config",
+  "severityAdjustment": "high -> medium"
+}
+```
+
+#### CONFIRMED (No mitigation found)
+Searched thoroughly and no protection exists:
+```json
+{
+  "findingId": "SEC-003",
+  "verdict": "confirmed",
+  "searchPerformed": [
+    "Searched for sanitization in data flow: none found",
+    "Checked middleware chain: no input validation",
+    "Checked framework: raw SQL used, not ORM"
+  ],
+  "recommendation": "Original recommendation stands"
+}
+```
+
+#### FALSE_POSITIVE (Not actually vulnerable)
+The finding is incorrect:
+```json
+{
+  "findingId": "SEC-004",
+  "verdict": "false_positive",
+  "reason": "Code is in test file, never runs in production",
+  "evidence": [
+    "File path: src/__tests__/injection.test.ts",
+    "Intentionally vulnerable for testing security tools"
+  ]
+}
+```
+
+## Common Mitigation Patterns to Check
+
+### XSS Findings
+1. Is output in React JSX? (auto-escaped unless dangerouslySetInnerHTML)
+2. Is DOMPurify/sanitize-html used before rendering?
+3. Is Content-Security-Policy set?
+4. Is the value used in a non-HTML context (JSON response)?
+
+### SQL Injection Findings
+1. Is an ORM used? (Prisma, TypeORM, Sequelize auto-parameterize)
+2. Is the query builder's safe API used? (.where() not .raw())
+3. Is input validated to only allow safe characters?
+4. Is it a prepared statement?
+
+### Command Injection Findings
+1. Is execFile used instead of exec? (no shell interpretation)
+2. Is input validated to a whitelist of commands?
+3. Is the command hardcoded with only arguments from user?
+
+### Path Traversal Findings
+1. Is path.resolve() + startsWith() check used?
+2. Is the path validated against a whitelist?
+3. Does the framework handle this automatically?
+
+### SSRF Findings
+1. Is the URL validated against an allowlist of domains?
+2. Is there a proxy that blocks internal IPs?
+3. Are internal network ranges blocked?
+
+### Secrets in Code Findings
+1. Is the file in .gitignore? (local only, not in repo)
+2. Is it a .example file with placeholder values?
+3. Is it localhost/development credentials only?
+4. Is there environment variable loading that overrides?
+
+## Output Format
+
+```json
+{
+  "validatorId": "mitigation-validator",
+  "validatedAt": "2024-01-01T00:00:00Z",
+  "results": [
+    {
+      "findingId": "SEC-001",
+      "originalSeverity": "critical",
+      "verdict": "mitigated|partial|confirmed|false_positive",
+      "mitigationType": "input_validation|middleware|framework|config|none",
+      "evidence": ["..."],
+      "searchPerformed": ["..."],
+      "adjustedSeverity": "medium",  // only if changed
+      "recommendation": "...",
+      "codeReferences": [
+        {"file": "src/middleware/validate.ts", "line": 45, "description": "Zod validation"}
+      ]
+    }
+  ],
+  "summary": {
+    "total": 10,
+    "mitigated": 3,
+    "partial": 2,
+    "confirmed": 4,
+    "falsePositive": 1
+  },
+  "recommendations": [
+    "Consider centralizing input validation - found 3 different patterns",
+    "helmet() is missing CSP - add it to mitigate multiple XSS findings"
+  ]
+}
+```
+
+## Rules
+
+1. **Actually search** - Use grep/read files to find mitigations
+2. **Be thorough** - Check the entire request path, not just the vulnerable line
+3. **Be fair** - If mitigation exists, acknowledge it
+4. **Be specific** - Cite exact files and line numbers
+5. **Consider context** - Development vs production, test vs real code
+6. **Check patterns** - If one file is safe, why isn't this one?
+
+## What NOT to Accept as Mitigation
+
+- "We have a WAF" without evidence of rules
+- "It requires authentication" (authenticated users can still attack)
+- "It's internal only" (unless truly isolated network)
+- "Low traffic endpoint" (still exploitable)
+- "We trust our users" (never valid)
+
+START VALIDATION. Search the codebase for each finding.

package/dist/prompts/orchestration.md

@@ -443,18 +443,76 @@ Output for each finding:
 
 ---
 
-## PHASE 3: CROSS-VALIDATION
+## PHASE 3: MITIGATION VALIDATION (CRITICAL)
 
-Launch 3 validators IN PARALLEL after Phase 2 completes:
+**This phase determines if findings are ACTUALLY exploitable or if other code prevents the attack.**
+
+### Validator M: Mitigation Hunter
+
+For EVERY finding from Phase 1+2, actively search the codebase for mitigations:
+
+#### Search Checklist:
+1. **Input Validation** - Is input sanitized before reaching the vulnerable sink?
+   ```bash
+   grep -r "validate|sanitize|escape|Zod|Joi|yup" src/
+   ```
+
+2. **Middleware Protection** - Is there middleware that protects this route?
+   ```bash
+   grep -r "app.use|helmet|csrf|rateLimit" src/
+   ```
+
+3. **Framework Auto-Protection** - Does the framework handle this automatically?
+   - React JSX auto-escapes (unless dangerouslySetInnerHTML)
+   - Prisma/TypeORM parameterize queries automatically
+   - Next.js API routes have built-in protections
+
+4. **Route Protection** - Is the endpoint protected by auth/authorization?
+   ```bash
+   grep -r "requireAuth|isAdmin|authorize" src/
+   ```
+
+5. **Configuration** - Is there security config that applies?
+   - CSP headers blocking XSS
+   - CORS restricting origins
+   - Rate limiting preventing abuse
+
+#### Output Per Finding:
+```json
+{
+  "findingId": "SEC-001",
+  "verdict": "mitigated|partial|confirmed|false_positive",
+  "mitigationType": "input_validation|middleware|framework|config|none",
+  "evidence": [
+    "Found Zod validation at src/routes/user.ts:23",
+    "Schema restricts input to alphanumeric only",
+    "XSS payload would fail validation"
+  ],
+  "adjustedSeverity": "low",
+  "codeReferences": [
+    {"file": "src/middleware/validate.ts", "line": 45}
+  ]
+}
+```
+
+**Verdicts:**
+- `mitigated` - Another control fully prevents the attack → Remove from report or mark as INFO
+- `partial` - Some protection but can be bypassed → Keep but may downgrade severity
+- `confirmed` - No mitigation found → Keep original severity
+- `false_positive` - Finding is incorrect (test file, dead code, etc.) → Remove
+
+---
+
+## PHASE 4: CROSS-VALIDATION
+
+Launch 3 validators IN PARALLEL after Phase 3 completes:
 
 ### Validator A: False Positive & Duplicate Hunter
 
-Review ALL findings from Phase 1 + Phase 2 duplicate analysis.
+Review ALL findings that passed Phase 3 (not mitigated).
 For each finding determine if it's FALSE POSITIVE or DUPLICATE:
 - Is the code actually reachable?
-- Are there mitigating controls elsewhere?
 - Is the context misunderstood?
-- Is it already handled by a framework?
 - Is this a DUPLICATE of another finding? (same root cause)
 - Does an EXISTING SOLUTION already exist in the codebase?
 
@@ -504,7 +562,7 @@ Output:
 
 ---
 
-## PHASE 4: POSITIVE OBSERVATIONS
+## PHASE 6: POSITIVE OBSERVATIONS
 
 Scan for good practices to include in the report:
 - Security controls that work well
@@ -517,12 +575,32 @@ Output as list of strings.
 
 ---
 
-## PHASE 5: BUILD CONSENSUS & GENERATE OUTPUT
+## PHASE 7: BUILD CONSENSUS & GENERATE OUTPUT
+
+1. **Apply Mitigation Results** (from Phase 3):
+   - Remove findings marked as `mitigated` or `false_positive`
+   - Adjust severity for findings marked as `partial`
+   - Add mitigation notes to confirmed findings
+
+2. Calculate confidence: (confirmations / total_validators) * 100
+3. Remove findings with confidence < 50%
+4. Add missed issues from Validator C
+5. Sort: severity DESC, confidence DESC
 
-1. Calculate confidence: (confirmations / total_validators) * 100
-2. Remove findings with confidence < 50%
-3. Add missed issues from Validator C
-4. Sort: severity DESC, confidence DESC
+### Include Mitigation Summary
+
+For each finding that passed validation, include:
+```json
+{
+  "id": "SEC-001",
+  "mitigationStatus": "confirmed",
+  "mitigationChecks": [
+    "No input validation found between user input and SQL query",
+    "No ORM - raw SQL used",
+    "No middleware protection on this route"
+  ]
+}
+```
 
 ### SAVE OUTPUT AS JSON
 
@@ -539,7 +617,10 @@ Output as list of strings.
     "info": 0
   },
   "findings": [
-    "all findings with full fields"
+    "all findings with full fields including mitigationStatus"
+  ],
+  "mitigatedFindings": [
+    {"id": "SEC-005", "reason": "Protected by Zod schema validation", "originalSeverity": "high"}
   ],
   "positiveObservations": [
     "Good pattern 1",
@@ -548,14 +629,14 @@ Output as list of strings.
   "falsePositives": [
     {"id": "...", "reason": "..."}
   ],
-  "agentsUsed": ["Security Core", "Auth & Session"],
+  "agentsUsed": ["Security Core", "Auth & Session", "Mitigation Validator"],
   "scanDuration": 0
 }
 ```
 
-Save as: coverme-scan.json
+Save as: .coverme/scan.json
 
-Then generate HTML report:
+Then generate PDF report:
 ```
-coverme report coverme-scan.json -f html -o coverme-report.html
+coverme report .coverme/scan.json
 ```

package/dist/report/generator.d.ts

@@ -49,6 +49,7 @@ interface ReportData {
     typeGroups: TypeGroup[];
     codeCount: number;
     devopsCount: number;
+    totalFindings: number;
     positiveCount: number;
     falsePositives: Array<{
         id: string;

package/dist/report/generator.d.ts.map

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package/dist/report/generator.js

@@ -45,6 +45,30 @@ const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
 const puppeteer_1 = __importDefault(require("puppeteer"));
 const handlebars_1 = __importDefault(require("handlebars"));
+// Helper to extract counts from summary (supports both flat and nested bySeverity formats)
+function getSeverityCounts(summary) {
+    if (!summary) {
+        return { critical: 0, high: 0, medium: 0, low: 0, info: 0 };
+    }
+    // Check if it's nested format (summary.bySeverity.critical)
+    if (summary.bySeverity) {
+        return {
+            critical: summary.bySeverity.critical || 0,
+            high: summary.bySeverity.high || 0,
+            medium: summary.bySeverity.medium || 0,
+            low: summary.bySeverity.low || 0,
+            info: summary.bySeverity.info || 0,
+        };
+    }
+    // Flat format (summary.critical)
+    return {
+        critical: summary.critical || 0,
+        high: summary.high || 0,
+        medium: summary.medium || 0,
+        low: summary.low || 0,
+        info: summary.info || 0,
+    };
+}
 function calculateScore(result) {
     // Scoring: Start at 100, subtract based on findings
     // Critical: -15 each
@@ -52,11 +76,12 @@ function calculateScore(result) {
     // Medium: -3 each
     // Low: -1 each
     // Info: 0
+    const counts = getSeverityCounts(result.summary);
     let score = 100;
-    score -= result.summary.critical * 15;
-    score -= result.summary.high * 8;
-    score -= result.summary.medium * 3;
-    score -= result.summary.low * 1;
+    score -= counts.critical * 15;
+    score -= counts.high * 8;
+    score -= counts.medium * 3;
+    score -= counts.low * 1;
     score = Math.max(0, Math.min(100, score));
     let grade;
     if (score >= 90)
@@ -470,6 +495,7 @@ async function generatePdfReport(result, outputPath, falsePositives = []) {
     const templatePath = path.join(__dirname, '..', 'templates', 'report.html');
     const templateHtml = fs.readFileSync(templatePath, 'utf-8');
     const { grade, value } = calculateScore(result);
+    const counts = getSeverityCounts(result.summary);
     const criticalFindings = result.findings.filter(f => f.severity === 'critical');
     const highFindings = result.findings.filter(f => f.severity === 'high');
     const mediumFindings = result.findings.filter(f => f.severity === 'medium');
@@ -488,11 +514,11 @@ async function generatePdfReport(result, outputPath, falsePositives = []) {
         }),
         scoreGrade: grade,
         scoreValue: value,
-        criticalCount: result.summary?.critical || 0,
-        highCount: result.summary?.high || 0,
-        mediumCount: result.summary?.medium || 0,
-        lowCount: result.summary?.low || 0,
-        infoCount: result.summary?.info || 0,
+        criticalCount: counts.critical,
+        highCount: counts.high,
+        mediumCount: counts.medium,
+        lowCount: counts.low,
+        infoCount: counts.info,
         executiveSummary: generateExecutiveSummary(result),
         criticalFindings,
         highFindings,
@@ -503,10 +529,11 @@ async function generatePdfReport(result, outputPath, falsePositives = []) {
         typeGroups,
         codeCount: codeGroup?.findings.length || 0,
         devopsCount: devopsGroup?.findings.length || 0,
+        totalFindings: result.findings?.length || 0,
         positiveCount: result.positiveObservations?.length || 0,
         falsePositives,
         falsePositiveCount: falsePositives.length,
-        lowInfoCount: (result.summary?.low || 0) + (result.summary?.info || 0),
+        lowInfoCount: counts.low + counts.info,
         positiveObservations: result.positiveObservations || [],
         scanDuration: `${Math.round((result.scanDuration || 0) / 1000)}s`,
         agentCount: result.agentCount || result.agentsUsed?.length || 0,
@@ -570,6 +597,7 @@ async function generateHtmlReport(result, outputPath, falsePositives = []) {
         typeGroups,
         codeCount: codeGroup?.findings.length || 0,
         devopsCount: devopsGroup?.findings.length || 0,
+        totalFindings: result.findings?.length || 0,
         positiveCount: result.positiveObservations?.length || 0,
         falsePositives,
         falsePositiveCount: falsePositives.length,

package/dist/report/generator.js.map

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package/dist/templates/report.html

@@ -822,20 +822,23 @@
           <div class="nav-item" onclick="showPage('severity')">
             <svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2"><path d="M12 9v4m0 4h.01M21 12a9 9 0 11-18 0 9 9 0 0118 0z"/></svg>
             By Severity
-            {{#if criticalCount}}<span class="nav-badge nav-badge-critical">{{criticalCount}}</span>{{/if}}
+            <span class="nav-badge nav-badge-default">{{totalFindings}}</span>
           </div>
           <div class="nav-item" onclick="showPage('files')">
             <svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2"><path d="M3 7v10a2 2 0 002 2h14a2 2 0 002-2V9a2 2 0 00-2-2h-6l-2-2H5a2 2 0 00-2 2z"/></svg>
             By File
+            <span class="nav-badge nav-badge-default">{{fileGroups.length}}</span>
           </div>
           <div class="nav-item" onclick="showPage('components')">
             <svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2"><rect x="3" y="3" width="7" height="7"/><rect x="14" y="3" width="7" height="7"/><rect x="14" y="14" width="7" height="7"/><rect x="3" y="14" width="7" height="7"/></svg>
             Components
+            <span class="nav-badge nav-badge-default">{{departmentGroups.length}}</span>
           </div>
           {{#if typeGroups}}
           <div class="nav-item" onclick="showPage('type')">
             <svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2"><polyline points="16,18 22,12 16,6"/><polyline points="8,6 2,12 8,18"/></svg>
             Code / DevOps
+            <span class="nav-badge nav-badge-default">{{typeGroups.length}}</span>
           </div>
           {{/if}}
         </div>

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "coverme-scanner",
-  "version": "1.0.16",
+  "version": "1.0.18",
   "description": "AI-powered code scanner with multi-agent verification for Claude Code. One command scans everything.",
   "main": "dist/index.js",
   "bin": {