corydora 0.3.2 → 1.0.3

package/dist/commands/status.js

@@ -1,21 +1,40 @@
-import { countTasksByStatus, loadRunState, loadTaskStore } from '../queue/state.js';
+import { countTasksByStatus, loadFileStore, loadRunState, loadTaskStore } from '../queue/state.js';
 import { loadRequiredConfig } from './helpers.js';
 import { tmuxSessionExists } from '../runtime/tmux.js';
+function nextRetryTimes(taskStore) {
+    return taskStore.tasks
+        .filter((task) => task.nextEligibleAt)
+        .sort((left, right) => (left.nextEligibleAt ?? '').localeCompare(right.nextEligibleAt ?? ''))
+        .slice(0, 3)
+        .map((task) => `${task.id} @ ${task.nextEligibleAt}`);
+}
 export async function runStatusCommand(projectRoot, json, ui) {
     const config = await loadRequiredConfig(projectRoot);
-    const [runState, taskStore] = await Promise.all([
+    const [runState, taskStore, fileStore] = await Promise.all([
         loadRunState(projectRoot, config),
         loadTaskStore(projectRoot, config),
+        loadFileStore(projectRoot, config),
     ]);
     const payload = {
         runState,
         queue: {
-            pending: countTasksByStatus(taskStore, 'pending'),
-            claimed: countTasksByStatus(taskStore, 'claimed'),
+            queued: countTasksByStatus(taskStore, 'queued'),
+            leased: countTasksByStatus(taskStore, 'leased'),
+            applying: countTasksByStatus(taskStore, 'applying'),
+            validating: countTasksByStatus(taskStore, 'validating'),
             done: countTasksByStatus(taskStore, 'done'),
-            failed: countTasksByStatus(taskStore, 'failed'),
+            deferred: countTasksByStatus(taskStore, 'deferred'),
             blocked: countTasksByStatus(taskStore, 'blocked'),
+            manual: countTasksByStatus(taskStore, 'manual'),
+        },
+        files: {
+            queued: fileStore.files.filter((file) => file.status === 'queued').length,
+            leased: fileStore.files.filter((file) => file.status === 'leased').length,
+            analyzed: fileStore.files.filter((file) => file.status === 'analyzed').length,
+            deferred: fileStore.files.filter((file) => file.status === 'deferred').length,
+            manual: fileStore.files.filter((file) => file.status === 'manual').length,
         },
+        nextRetry: nextRetryTimes(taskStore),
         tmuxAttached: runState?.background?.sessionName
             ? tmuxSessionExists(runState.background.sessionName)
             : false,
@@ -30,8 +49,20 @@ export async function runStatusCommand(projectRoot, json, ui) {
     }
     ui.info(`Run: ${runState.runId} (${runState.status})`);
     ui.info(`Phase: ${runState.phase}`);
-    ui.info(`Pending tasks: ${payload.queue.pending}`);
+    ui.info(`Mode: ${runState.mode}`);
+    ui.info(`Queued tasks: ${payload.queue.queued}`);
+    ui.info(`Deferred tasks: ${payload.queue.deferred}`);
     ui.info(`Done tasks: ${payload.queue.done}`);
+    ui.info(`Queued files: ${payload.files.queued}`);
+    ui.info(`Effective isolation: ${runState.effectiveIsolationMode}`);
+    if (payload.nextRetry.length > 0) {
+        ui.info(`Next retries: ${payload.nextRetry.join(', ')}`);
+    }
+    if (runState.workers.length > 0) {
+        ui.info(`Workers: ${runState.workers
+            .map((worker) => `${worker.id}=${worker.status}${worker.details ? `(${worker.details})` : ''}`)
+            .join(', ')}`);
+    }
     if (runState.background?.sessionName) {
         ui.info(`tmux session: ${runState.background.sessionName}`);
         ui.info(`Keep awake: ${runState.background.keepAwake ? 'enabled' : 'disabled'}`);

package/dist/commands/status.js.map

@@ -1 +1 @@
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+{"version":3,"file":"status.js","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,aAAa,EAAE,YAAY,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AACnG,OAAO,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAC;AAClD,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAC;AAGvD,SAAS,cAAc,CAAC,SAAoD;IAC1E,OAAO,SAAS,CAAC,KAAK;SACnB,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC;SACrC,IAAI,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,cAAc,IAAI,EAAE,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,cAAc,IAAI,EAAE,CAAC,CAAC;SAC5F,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC;SACX,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,EAAE,MAAM,IAAI,CAAC,cAAc,EAAE,CAAC,CAAC;AAC1D,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,gBAAgB,CAAC,WAAmB,EAAE,IAAa,EAAE,EAAM;IAC/E,MAAM,MAAM,GAAG,MAAM,kBAAkB,CAAC,WAAW,CAAC,CAAC;IACrD,MAAM,CAAC,QAAQ,EAAE,SAAS,EAAE,SAAS,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;QACzD,YAAY,CAAC,WAAW,EAAE,MAAM,CAAC;QACjC,aAAa,CAAC,WAAW,EAAE,MAAM,CAAC;QAClC,aAAa,CAAC,WAAW,EAAE,MAAM,CAAC;KACnC,CAAC,CAAC;IAEH,MAAM,OAAO,GAAG;QACd,QAAQ;QACR,KAAK,EAAE;YACL,MAAM,EAAE,kBAAkB,CAAC,SAAS,EAAE,QAAQ,CAAC;YAC/C,MAAM,EAAE,kBAAkB,CAAC,SAAS,EAAE,QAAQ,CAAC;YAC/C,QAAQ,EAAE,kBAAkB,CAAC,SAAS,EAAE,UAAU,CAAC;YACnD,UAAU,EAAE,kBAAkB,CAAC,SAAS,EAAE,YAAY,CAAC;YACvD,IAAI,EAAE,kBAAkB,CAAC,SAAS,EAAE,MAAM,CAAC;YAC3C,QAAQ,EAAE,kBAAkB,CAAC,SAAS,EAAE,UAAU,CAAC;YACnD,OAAO,EAAE,kBAAkB,CAAC,SAAS,EAAE,SAAS,CAAC;YACjD,MAAM,EAAE,kBAAkB,CAAC,SAAS,EAAE,QAAQ,CAAC;SAChD;QACD,KAAK,EAAE;YACL,MAAM,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,MAAM;YACzE,MAAM,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,MAAM;YACzE,QAAQ,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,UAAU,CAAC,CAAC,MAAM;YAC7E,QAAQ,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,UAAU,CAAC,CAAC,MAAM;YAC7E,MAAM,EAAE,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,MAAM;SAC1E;QACD,SAAS,EAAE,cAAc,CAAC,SAAS,CAAC;QACpC,YAAY,EAAE,QAAQ,EAAE,UAAU,EAAE,WAAW;YAC7C,CAAC,CAAC,iBAAiB,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC;YACpD,CAAC,CAAC,KAAK;KACV,CAAC;IAEF,IAAI,IAAI,EAAE,CAAC;QACT,EAAE,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC;QACtB,OAAO;IACT,CAAC;IAED,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,EAAE,CAAC,IAAI,CAAC,+BAA+B,CAAC,CAAC;QACzC,OAAO;IACT,CAAC;IAED,EAAE,CAAC,IAAI,CAAC,QAAQ,QAAQ,CAAC,KAAK,KAAK,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC;IACvD,EAAE,CAAC,IAAI,CAAC,UAAU,QAAQ,CAAC,KAAK,EAAE,CAAC,CAAC;IACpC,EAAE,CAAC,IAAI,CAAC,SAAS,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC;IAClC,EAAE,CAAC,IAAI,CAAC,iBAAiB,OAAO,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;IACjD,EAAE,CAAC,IAAI,CAAC,mBAAmB,OAAO,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC;IACrD,EAAE,CAAC,IAAI,CAAC,eAAe,OAAO,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IAC7C,EAAE,CAAC,IAAI,CAAC,iBAAiB,OAAO,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;IACjD,EAAE,CAAC,IAAI,CAAC,wBAAwB,QAAQ,CAAC,sBAAsB,EAAE,CAAC,CAAC;IACnE,IAAI,OAAO,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACjC,EAAE,CAAC,IAAI,CAAC,iBAAiB,OAAO,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC3D,CAAC;IACD,IAAI,QAAQ,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAChC,EAAE,CAAC,IAAI,CACL,YAAY,QAAQ,CAAC,OAAO;aACzB,GAAG,CACF,CAAC,MAAM,EAAE,EAAE,CAAC,GAAG,MAAM,CAAC,EAAE,IAAI,MAAM,CAAC,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAC1F;aACA,IAAI,CAAC,IAAI,CAAC,EAAE,CAChB,CAAC;IACJ,CAAC;IACD,IAAI,QAAQ,CAAC,UAAU,EAAE,WAAW,EAAE,CAAC;QACrC,EAAE,CAAC,IAAI,CAAC,iBAAiB,QAAQ,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CAAC;QAC5D,EAAE,CAAC,IAAI,CAAC,eAAe,QAAQ,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC;IACnF,CAAC;AACH,CAAC"}

package/dist/config/files.js

@@ -1,6 +1,7 @@
 import { mkdir, readFile, writeFile } from 'node:fs/promises';
 import { existsSync } from 'node:fs';
 import { dirname, join, resolve } from 'node:path';
+import { isDeepStrictEqual } from 'node:util';
 import { CONFIG_FILE_NAME, CORYDORA_DIR_NAME, TASK_CATEGORY_FILES } from '../constants.js';
 import { parseCorydoraConfig } from './schema.js';
 function queueTemplate(category) {
@@ -38,8 +39,21 @@ export async function loadConfig(projectRoot, configPath) {
 }
 export async function saveConfig(projectRoot, config) {
     const configPath = resolve(projectRoot, CONFIG_FILE_NAME);
+    const nextContent = `${JSON.stringify(config, null, 2)}\n`;
+    if (existsSync(configPath)) {
+        try {
+            const existing = await readFile(configPath, 'utf8');
+            const parsed = JSON.parse(existing);
+            if (isDeepStrictEqual(parsed, config)) {
+                return configPath;
+            }
+        }
+        catch {
+            // Fall through and rewrite malformed or unreadable config files.
+        }
+    }
     await mkdir(dirname(configPath), { recursive: true });
-    await writeFile(configPath, `${JSON.stringify(config, null, 2)}\n`, 'utf8');
+    await writeFile(configPath, nextContent, 'utf8');
     return configPath;
 }
 export async function ensureCorydoraStructure(projectRoot, config) {
@@ -67,6 +81,14 @@ export async function ensureCorydoraStructure(projectRoot, config) {
     if (!existsSync(emptyTasksPath)) {
         await writeFile(emptyTasksPath, `${JSON.stringify({ tasks: [] }, null, 2)}\n`, 'utf8');
     }
+    const emptyFilesPath = resolve(projectRoot, config.paths.stateDir, 'files.json');
+    if (!existsSync(emptyFilesPath)) {
+        await writeFile(emptyFilesPath, `${JSON.stringify({ files: [] }, null, 2)}\n`, 'utf8');
+    }
+    const eventsPath = resolve(projectRoot, config.paths.stateDir, 'events.ndjson');
+    if (!existsSync(eventsPath)) {
+        await writeFile(eventsPath, '', 'utf8');
+    }
 }
 export function resolveStatePath(projectRoot, config, fileName) {
     return join(projectRoot, config.paths.stateDir, fileName);

package/dist/config/files.js.map

@@ -1 +1 @@
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package/dist/config/schema.d.ts

@@ -1,84 +1,4 @@
-import { z } from 'zod';
 import type { GitIsolationMode, RuntimeProviderId, CorydoraConfig, TechLens } from '../types/domain.js';
-export declare const corydoraConfigSchema: z.ZodObject<{
-    version: z.ZodLiteral<1>;
-    git: z.ZodObject<{
-        isolationMode: z.ZodEnum<{
-            worktree: "worktree";
-            branch: "branch";
-            "current-branch": "current-branch";
-        }>;
-        branchPrefix: z.ZodString;
-        trackMarkdownQueues: z.ZodBoolean;
-        worktreeRoot: z.ZodOptional<z.ZodString>;
-    }, z.core.$strip>;
-    runtime: z.ZodObject<{
-        provider: z.ZodEnum<{
-            "claude-cli": "claude-cli";
-            "codex-cli": "codex-cli";
-            "gemini-cli": "gemini-cli";
-            "anthropic-api": "anthropic-api";
-            "openai-api": "openai-api";
-            "google-api": "google-api";
-            bedrock: "bedrock";
-            ollama: "ollama";
-            fake: "fake";
-        }>;
-        model: z.ZodString;
-        fallbackProvider: z.ZodOptional<z.ZodEnum<{
-            "claude-cli": "claude-cli";
-            "codex-cli": "codex-cli";
-            "gemini-cli": "gemini-cli";
-            "anthropic-api": "anthropic-api";
-            "openai-api": "openai-api";
-            "google-api": "google-api";
-            bedrock: "bedrock";
-            ollama: "ollama";
-            fake: "fake";
-        }>>;
-        maxOutputTokens: z.ZodNumber;
-        requestTimeoutMs: z.ZodNumber;
-        maxRetries: z.ZodNumber;
-    }, z.core.$strip>;
-    agents: z.ZodObject<{
-        enabledCategories: z.ZodArray<z.ZodEnum<{
-            bugs: "bugs";
-            performance: "performance";
-            tests: "tests";
-            todo: "todo";
-            features: "features";
-        }>>;
-        selectedBuiltinAgents: z.ZodArray<z.ZodString>;
-        importedAgentDirectory: z.ZodOptional<z.ZodString>;
-    }, z.core.$strip>;
-    scan: z.ZodObject<{
-        batchSize: z.ZodNumber;
-        maxConcurrentScans: z.ZodNumber;
-        allowBroadRisk: z.ZodBoolean;
-        includeExtensions: z.ZodArray<z.ZodString>;
-        excludeDirectories: z.ZodArray<z.ZodString>;
-    }, z.core.$strip>;
-    execution: z.ZodObject<{
-        backgroundByDefault: z.ZodBoolean;
-        preventIdleSleep: z.ZodBoolean;
-        maxFixesPerRun: z.ZodNumber;
-        maxRuntimeMinutes: z.ZodNumber;
-        backlogTarget: z.ZodNumber;
-        validateAfterFix: z.ZodBoolean;
-    }, z.core.$strip>;
-    todo: z.ZodObject<{
-        trackMarkdownFiles: z.ZodBoolean;
-        renderCompletedTasks: z.ZodBoolean;
-    }, z.core.$strip>;
-    paths: z.ZodObject<{
-        corydoraDir: z.ZodString;
-        stateDir: z.ZodString;
-        logsDir: z.ZodString;
-        runsDir: z.ZodString;
-        agentsDir: z.ZodString;
-        envFile: z.ZodString;
-    }, z.core.$strip>;
-}, z.core.$strip>;
 export declare function parseCorydoraConfig(raw: unknown): CorydoraConfig;
 export declare function getDefaultModel(provider: RuntimeProviderId): string;
 export declare function getDefaultConfig(options: {

package/dist/config/schema.js

@@ -1,65 +1,162 @@
 import { z } from 'zod';
-import { DEFAULT_BRANCH_PREFIX, DEFAULT_EXCLUDE_DIRECTORIES, DEFAULT_INCLUDE_EXTENSIONS, DEFAULT_MODELS, RUNTIME_PROVIDER_IDS, CORYDORA_DIR_NAME, } from '../constants.js';
+import { CORYDORA_MODES, DEFAULT_BRANCH_PREFIX, DEFAULT_EXCLUDE_DIRECTORIES, DEFAULT_INCLUDE_EXTENSIONS, DEFAULT_MODELS, RUNTIME_PROVIDER_IDS, CORYDORA_DIR_NAME, } from '../constants.js';
 const categorySchema = z.enum(['bugs', 'performance', 'tests', 'todo', 'features']);
 const providerSchema = z.enum(RUNTIME_PROVIDER_IDS);
 const isolationModeSchema = z.enum(['worktree', 'branch', 'current-branch']);
-export const corydoraConfigSchema = z.object({
-    version: z.literal(1),
-    git: z.object({
-        isolationMode: isolationModeSchema,
-        branchPrefix: z.string().min(1),
-        trackMarkdownQueues: z.boolean(),
-        worktreeRoot: z.string().min(1).optional(),
-    }),
-    runtime: z.object({
-        provider: providerSchema,
-        model: z.string().min(1),
-        fallbackProvider: providerSchema.optional(),
-        maxOutputTokens: z.number().int().positive(),
-        requestTimeoutMs: z.number().int().positive(),
-        maxRetries: z.number().int().min(0),
-    }),
-    agents: z.object({
-        enabledCategories: z.array(categorySchema).min(1),
-        selectedBuiltinAgents: z.array(z.string().min(1)).min(1),
-        importedAgentDirectory: z.string().min(1).optional(),
-    }),
-    scan: z.object({
-        batchSize: z.number().int().positive(),
-        maxConcurrentScans: z.number().int().positive(),
-        allowBroadRisk: z.boolean(),
-        includeExtensions: z.array(z.string().min(1)).min(1),
-        excludeDirectories: z.array(z.string().min(1)),
-    }),
-    execution: z.object({
-        backgroundByDefault: z.boolean(),
-        preventIdleSleep: z.boolean(),
-        maxFixesPerRun: z.number().int().positive(),
-        maxRuntimeMinutes: z.number().int().positive(),
-        backlogTarget: z.number().int().positive(),
-        validateAfterFix: z.boolean(),
-    }),
-    todo: z.object({
-        trackMarkdownFiles: z.boolean(),
-        renderCompletedTasks: z.boolean(),
-    }),
-    paths: z.object({
-        corydoraDir: z.string().min(1),
-        stateDir: z.string().min(1),
-        logsDir: z.string().min(1),
-        runsDir: z.string().min(1),
-        agentsDir: z.string().min(1),
-        envFile: z.string().min(1),
-    }),
-});
+const modeSchema = z.enum(CORYDORA_MODES);
+const runtimeStageSchema = z
+    .object({
+    provider: providerSchema.optional(),
+    model: z.string().min(1).optional(),
+    fallbackProvider: providerSchema.optional(),
+    maxOutputTokens: z.number().int().positive().optional(),
+    requestTimeoutMs: z.number().int().positive().optional(),
+    maxRetries: z.number().int().min(0).optional(),
+})
+    .default({});
+const modeProfileSchema = z
+    .object({
+    agentIds: z.array(z.string().min(1)).optional(),
+    categoryBias: z.array(categorySchema).optional(),
+})
+    .default({});
+function defaultModeProfiles(selectedBuiltinAgents) {
+    return {
+        auto: {},
+        churn: {},
+        clean: {
+            agentIds: ['todo-triager', 'refactoring-engineer', 'bug-investigator'],
+            categoryBias: ['todo', 'bugs', 'tests'],
+        },
+        refactor: {
+            agentIds: ['refactoring-engineer', 'todo-triager', 'performance-engineer'],
+            categoryBias: ['todo', 'performance', 'tests'],
+        },
+        performance: {
+            agentIds: ['performance-engineer', 'database-reviewer', 'bug-investigator'],
+            categoryBias: ['performance', 'bugs'],
+        },
+        linting: {
+            agentIds: ['bug-investigator', 'test-hardener', 'refactoring-engineer'],
+            categoryBias: ['bugs', 'tests', 'todo'],
+        },
+        documentation: {
+            agentIds: selectedBuiltinAgents.length > 0
+                ? selectedBuiltinAgents.slice(0, Math.min(3, selectedBuiltinAgents.length))
+                : ['todo-triager', 'feature-scout'],
+            categoryBias: ['todo', 'features', 'tests'],
+        },
+    };
+}
+function modeProfilesSchema(selectedBuiltinAgents) {
+    const defaults = defaultModeProfiles(selectedBuiltinAgents);
+    return z
+        .object({
+        auto: modeProfileSchema.optional(),
+        churn: modeProfileSchema.optional(),
+        clean: modeProfileSchema.optional(),
+        refactor: modeProfileSchema.optional(),
+        performance: modeProfileSchema.optional(),
+        linting: modeProfileSchema.optional(),
+        documentation: modeProfileSchema.optional(),
+    })
+        .default(defaults)
+        .transform((profiles) => ({
+        auto: profiles.auto ?? defaults.auto,
+        churn: profiles.churn ?? defaults.churn,
+        clean: profiles.clean ?? defaults.clean,
+        refactor: profiles.refactor ?? defaults.refactor,
+        performance: profiles.performance ?? defaults.performance,
+        linting: profiles.linting ?? defaults.linting,
+        documentation: profiles.documentation ?? defaults.documentation,
+    }));
+}
+function buildSchema(selectedBuiltinAgents) {
+    return z.object({
+        version: z.literal(1),
+        git: z.object({
+            isolationMode: isolationModeSchema,
+            branchPrefix: z.string().min(1),
+            trackMarkdownQueues: z.boolean(),
+            worktreeRoot: z.string().min(1).optional(),
+        }),
+        runtime: z.object({
+            provider: providerSchema,
+            model: z.string().min(1),
+            fallbackProvider: providerSchema.optional(),
+            maxOutputTokens: z.number().int().positive(),
+            requestTimeoutMs: z.number().int().positive(),
+            maxRetries: z.number().int().min(0),
+            stages: z
+                .object({
+                analyze: runtimeStageSchema,
+                fix: runtimeStageSchema,
+                summary: runtimeStageSchema,
+            })
+                .default({
+                analyze: {},
+                fix: {},
+                summary: {},
+            }),
+        }),
+        modes: z
+            .object({
+            default: modeSchema.default('auto'),
+            profiles: modeProfilesSchema(selectedBuiltinAgents),
+        })
+            .default({
+            default: 'auto',
+            profiles: defaultModeProfiles(selectedBuiltinAgents),
+        }),
+        agents: z.object({
+            enabledCategories: z.array(categorySchema).min(1),
+            selectedBuiltinAgents: z.array(z.string().min(1)).min(1),
+            importedAgentDirectory: z.string().min(1).optional(),
+        }),
+        scan: z.object({
+            batchSize: z.number().int().positive(),
+            maxConcurrentScans: z.number().int().positive(),
+            allowBroadRisk: z.boolean(),
+            includeExtensions: z.array(z.string().min(1)).min(1),
+            excludeDirectories: z.array(z.string().min(1)),
+        }),
+        execution: z.object({
+            backgroundByDefault: z.boolean(),
+            preventIdleSleep: z.boolean(),
+            maxFixesPerRun: z.number().int().positive(),
+            maxRuntimeMinutes: z.number().int().positive(),
+            backlogTarget: z.number().int().positive(),
+            validateAfterFix: z.boolean(),
+            maxAnalyzeWorkers: z.number().int().positive().default(2),
+            maxFixWorkers: z.number().int().positive().default(1),
+            maxAttempts: z.number().int().positive().default(3),
+            leaseTtlMinutes: z.number().int().positive().default(15),
+        }),
+        todo: z.object({
+            trackMarkdownFiles: z.boolean(),
+            renderCompletedTasks: z.boolean(),
+        }),
+        paths: z.object({
+            corydoraDir: z.string().min(1),
+            stateDir: z.string().min(1),
+            logsDir: z.string().min(1),
+            runsDir: z.string().min(1),
+            agentsDir: z.string().min(1),
+            envFile: z.string().min(1),
+        }),
+    });
+}
 export function parseCorydoraConfig(raw) {
-    return corydoraConfigSchema.parse(raw);
+    const rawObject = (raw ?? {});
+    const selectedBuiltinAgents = rawObject.agents?.selectedBuiltinAgents ?? ['bug-investigator'];
+    return buildSchema(selectedBuiltinAgents).parse(raw);
 }
 export function getDefaultModel(provider) {
     return DEFAULT_MODELS[provider] ?? 'sonnet';
 }
 export function getDefaultConfig(options) {
     const corydoraDir = CORYDORA_DIR_NAME;
+    const selectedBuiltinAgents = options.selectedBuiltinAgents.length > 0 ? options.selectedBuiltinAgents : ['bug-investigator'];
     return {
         version: 1,
         git: {
@@ -73,10 +170,19 @@ export function getDefaultConfig(options) {
             maxOutputTokens: 8192,
             requestTimeoutMs: 900_000,
             maxRetries: 3,
+            stages: {
+                analyze: {},
+                fix: {},
+                summary: {},
+            },
+        },
+        modes: {
+            default: 'auto',
+            profiles: defaultModeProfiles(selectedBuiltinAgents),
         },
         agents: {
             enabledCategories: ['bugs', 'performance', 'tests', 'todo', 'features'],
-            selectedBuiltinAgents: options.selectedBuiltinAgents,
+            selectedBuiltinAgents,
         },
         scan: {
             batchSize: 6,
@@ -92,6 +198,10 @@ export function getDefaultConfig(options) {
             maxRuntimeMinutes: 480,
             backlogTarget: 8,
             validateAfterFix: true,
+            maxAnalyzeWorkers: 2,
+            maxFixWorkers: 1,
+            maxAttempts: 3,
+            leaseTtlMinutes: 15,
         },
         todo: {
             trackMarkdownFiles: false,

package/dist/config/schema.js.map

@@ -1 +1 @@
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package/dist/constants.d.ts

@@ -1,5 +1,6 @@
 export declare const CONFIG_FILE_NAME = ".corydora.json";
 export declare const CORYDORA_DIR_NAME = ".corydora";
+export declare const CORYDORA_MODES: readonly ["auto", "churn", "clean", "refactor", "performance", "linting", "documentation"];
 export declare const BUILTIN_TASK_CATEGORIES: readonly ["bugs", "performance", "tests", "todo", "features"];
 export declare const TECH_LENSES: readonly ["typescript", "react", "nextjs", "node-cli", "electron", "security", "database", "refactoring"];
 export declare const RUNTIME_PROVIDER_IDS: readonly ["claude-cli", "codex-cli", "gemini-cli", "anthropic-api", "openai-api", "google-api", "bedrock", "ollama", "fake"];

package/dist/constants.js

@@ -1,5 +1,14 @@
 export const CONFIG_FILE_NAME = '.corydora.json';
 export const CORYDORA_DIR_NAME = '.corydora';
+export const CORYDORA_MODES = [
+    'auto',
+    'churn',
+    'clean',
+    'refactor',
+    'performance',
+    'linting',
+    'documentation',
+];
 export const BUILTIN_TASK_CATEGORIES = [
     'bugs',
     'performance',

package/dist/constants.js.map

@@ -1 +1 @@
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+{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,gBAAgB,GAAG,gBAAgB,CAAC;AACjD,MAAM,CAAC,MAAM,iBAAiB,GAAG,WAAW,CAAC;AAE7C,MAAM,CAAC,MAAM,cAAc,GAAG;IAC5B,MAAM;IACN,OAAO;IACP,OAAO;IACP,UAAU;IACV,aAAa;IACb,SAAS;IACT,eAAe;CACP,CAAC;AAEX,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACrC,MAAM;IACN,aAAa;IACb,OAAO;IACP,MAAM;IACN,UAAU;CACF,CAAC;AAEX,MAAM,CAAC,MAAM,WAAW,GAAG;IACzB,YAAY;IACZ,OAAO;IACP,QAAQ;IACR,UAAU;IACV,UAAU;IACV,UAAU;IACV,UAAU;IACV,aAAa;CACL,CAAC;AAEX,MAAM,CAAC,MAAM,oBAAoB,GAAG;IAClC,YAAY;IACZ,WAAW;IACX,YAAY;IACZ,eAAe;IACf,YAAY;IACZ,YAAY;IACZ,SAAS;IACT,QAAQ;IACR,MAAM;CACE,CAAC;AAEX,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,IAAI,EAAE,SAAS;IACf,WAAW,EAAE,gBAAgB;IAC7B,KAAK,EAAE,UAAU;IACjB,IAAI,EAAE,SAAS;IACf,QAAQ,EAAE,aAAa;CACf,CAAC;AAEX,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,KAAK;IACL,MAAM;IACN,KAAK;IACL,MAAM;IACN,MAAM;IACN,MAAM;IACN,MAAM;IACN,MAAM;IACN,OAAO;CACC,CAAC;AAEX,MAAM,CAAC,MAAM,2BAA2B,GAAG;IACzC,MAAM;IACN,OAAO;IACP,WAAW;IACX,QAAQ;IACR,OAAO;IACP,UAAU;IACV,MAAM;IACN,MAAM;IACN,eAAe;IACf,WAAW;IACX,MAAM;IACN,cAAc;IACd,KAAK;IACL,QAAQ;IACR,kBAAkB;IAClB,KAAK;CACG,CAAC;AAEX,MAAM,CAAC,MAAM,cAAc,GAA2B;IACpD,YAAY,EAAE,QAAQ;IACtB,WAAW,EAAE,aAAa;IAC1B,YAAY,EAAE,gBAAgB;IAC9B,eAAe,EAAE,mBAAmB;IACpC,YAAY,EAAE,OAAO;IACrB,YAAY,EAAE,gBAAgB;IAC9B,OAAO,EAAE,2CAA2C;IACpD,MAAM,EAAE,kBAAkB;IAC1B,IAAI,EAAE,qBAAqB;CAC5B,CAAC;AAEF,MAAM,CAAC,MAAM,qBAAqB,GAAG,UAAU,CAAC"}

package/dist/filesystem/discovery.d.ts

@@ -2,5 +2,7 @@ export interface DiscoveryOptions {
     includeExtensions: string[];
     excludeDirectories: string[];
 }
+export declare function isTestLikePath(filePath: string): boolean;
+export declare function filePriority(filePath: string): number;
 export declare function discoverCandidateFiles(projectRoot: string, options: DiscoveryOptions): string[];
 export declare function groupFilesForScheduling(files: string[]): Record<string, string[]>;

package/dist/filesystem/discovery.js

@@ -1,6 +1,6 @@
 import { readdirSync } from 'node:fs';
 import { extname, join, relative, resolve } from 'node:path';
-function isTestLikePath(filePath) {
+export function isTestLikePath(filePath) {
     return (filePath.includes('/__tests__/') ||
         filePath.includes('/tests/') ||
         filePath.includes('/test/') ||
@@ -10,7 +10,7 @@ function isTestLikePath(filePath) {
         filePath.includes('.spec.') ||
         filePath.includes('.test.'));
 }
-function filePriority(filePath) {
+export function filePriority(filePath) {
     if (filePath.includes('/src/') && !isTestLikePath(filePath)) {
         return 0;
     }

package/dist/filesystem/discovery.js.map

@@ -1 +1 @@
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package/dist/filesystem/gitignore.d.ts

@@ -1 +1,4 @@
+export declare function recommendedGitignoreEntries(trackMarkdownQueues: boolean): string[];
+export declare function findMissingGitignoreEntries(projectRoot: string, trackMarkdownQueues: boolean): Promise<string[]>;
+export declare function appendGitignoreEntries(projectRoot: string, entries: string[]): Promise<boolean>;
 export declare function ensureGitignoreEntries(projectRoot: string, trackMarkdownQueues: boolean): Promise<void>;