corydora 0.1.0 → 0.3.0

package/CHANGELOG.md

@@ -2,6 +2,32 @@
 
 All notable changes to Corydora are documented in this file.
 
+## [0.3.0](https://github.com/glorioustephan/corydora/compare/corydora-v0.2.0...corydora-v0.3.0) (2026-03-31)
+
+### Features
+
+- **cli:** add --no-verify option to skip git commit hooks ([cd9efc3](https://github.com/glorioustephan/corydora/commit/cd9efc3cb7ce7c2168680c495e2638266cdb0a39))
+- **cli:** add --no-verify option to skip git commit hooks ([6fcb797](https://github.com/glorioustephan/corydora/commit/6fcb7977cd2ee2c35728d16ef4b93d7b269f46fc))
+- **cli:** add --no-verify option to skip git commit hooks ([8d27d31](https://github.com/glorioustephan/corydora/commit/8d27d31ec8f6e4639b4a5183912238741e34a51b))
+
+### Bug Fixes
+
+- **runtime:** avoid undefined optional flags in rebase conflict resolution ([97bf3e2](https://github.com/glorioustephan/corydora/commit/97bf3e26ff8e236d45cd8ef0a12a0dc4b8b967ba))
+
+## [0.2.0](https://github.com/glorioustephan/corydora/compare/corydora-v0.1.0...corydora-v0.2.0) (2026-03-25)
+
+### Features
+
+- add initial release package and update README with new logo format ([dd696d1](https://github.com/glorioustephan/corydora/commit/dd696d14b8dd5ee2e29d585ac5b288398e7aaecb))
+- **adding caffeine support on macos:** preventing machine from sleeping when preferred ([7838627](https://github.com/glorioustephan/corydora/commit/7838627225526ecb22af6ec744a3fa8e7e405a3e))
+- **docs and ci:** updating docs infrastructure to work with github actions, adding release-please ([c71da43](https://github.com/glorioustephan/corydora/commit/c71da43b98dcac4f4585e6785492518699018e32))
+- enhance runtime configuration and documentation- Added configurable parameters for request ([7838627](https://github.com/glorioustephan/corydora/commit/7838627225526ecb22af6ec744a3fa8e7e405a3e))
+
+### Bug Fixes
+
+- **cli:** enhancing --version and --help flags ([2b65e59](https://github.com/glorioustephan/corydora/commit/2b65e59c97f656325e2e6cd5434d6556082161dd))
+- **cli:** enhancing --version and --help flags ([1832127](https://github.com/glorioustephan/corydora/commit/1832127f79a75c2f3efc7cb21f27f3c9148ab3c8))
+
 ## [0.1.0] - 2026-03-22
 
 ### Added

package/README.md

@@ -69,25 +69,70 @@ corydora run --background
 fnm use
 # or: nvm use
 pnpm install
-pnpm lint
-pnpm format:check
-pnpm typecheck
-pnpm test
-pnpm build
+pnpm check
 pnpm pack:preview
 ```
 
-The main verification surface right now is:
+Use `pnpm` for local development and test execution. `npm` is used for publishing to the registry
+and is intentionally outside the normal inner-loop flow.
 
-- `pnpm lint`
-- `pnpm format:check`
-- `pnpm typecheck`
-- `pnpm test`
-- `pnpm build`
-- `pnpm pack:preview`
+The core development verification commands are:
 
-`pnpm check` runs the core verification steps and is also used by `prepublishOnly`. `pnpm
-pack:preview` produces the exact npm tarball shape that CI uploads as a workflow artifact.
+- `pnpm lint` - linting checks
+- `pnpm format:check` - Prettier checks
+- `pnpm typecheck` - TypeScript type checking
+- `pnpm test` - Unit + integration tests
+- `pnpm build` - `tsc` compile output to `dist/`
+- `pnpm pack:preview` - creates `artifacts/corydora-<version>.tgz` matching what CI uploads
+
+`pnpm check` is a shortcut for lint + format + typecheck + test + build. It is used both locally
+and by `pnpm prepublishOnly` in CI/release jobs.
+
+### Recommended flows
+
+#### 1) Daily dev loop
+
+1. Make changes on your branch.
+2. Commit with conventional commit format (`pnpm commit`).
+3. Validate before sharing:
+
+```bash
+pnpm check
+```
+
+4. Open a PR to `main`.
+
+#### 2) Release prep (changelog + version)
+
+After feature/fix PRs merge into `main`, generate or refresh the release pull request:
+
+```bash
+pnpm release:plan
+```
+
+This uses release-please to:
+
+- collect merged Conventional Commits
+- bump `package.json` version
+- update `CHANGELOG.md`
+
+Merge the release PR when ready.
+
+#### 3) Publish
+
+When the release PR is merged:
+
+- `publish.yml` runs `pnpm prepublishOnly` (same as `pnpm check`)
+- then publishes to npm.
+
+For local/manual verification of packaging:
+
+```bash
+pnpm release:publish
+```
+
+(`pnpm release:publish` runs `pnpm prepublishOnly && npm publish`; only use this when you
+understand it bypasses the GitHub release PR workflow.)
 
 ### Commit workflow
 

package/dist/commands/run.d.ts

@@ -7,5 +7,6 @@ export interface RunCommandOptions {
     foreground?: boolean;
     resume?: boolean;
     sessionName?: string;
+    skipCommitHooks?: boolean;
 }
 export declare function runRunCommand(options: RunCommandOptions, ui: Ui): Promise<void>;

package/dist/commands/run.js

@@ -52,6 +52,7 @@ export async function runRunCommand(options, ui) {
             sessionName,
             ...(options.resume ? ['--resume'] : []),
             ...(options.dryRun ? ['--dry-run'] : []),
+            ...(options.skipCommitHooks ? ['--no-verify'] : []),
         ];
         const backgroundLaunch = launchBackgroundRun(sessionName, args, options.projectRoot, config.execution.preventIdleSleep);
         if (options.json) {
@@ -71,6 +72,8 @@ export async function runRunCommand(options, ui) {
         agents,
         dryRun: Boolean(options.dryRun),
         resume: Boolean(options.resume),
+        logToConsole: !options.json,
+        skipCommitHooks: Boolean(options.skipCommitHooks),
         ...(options.sessionName ? { sessionName: options.sessionName } : {}),
     });
     if (options.json) {

package/dist/commands/run.js.map

@@ -1 +1 @@
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package/dist/git/repository.d.ts

@@ -2,4 +2,6 @@ export declare function runGit(args: string[], cwd: string): string;
 export declare function hasDirtyWorktree(cwd: string): boolean;
 export declare function currentBranch(cwd: string): string;
 export declare function ensureCleanWorktree(cwd: string): void;
-export declare function commitAllChanges(cwd: string, message: string): boolean;
+export declare function commitAllChanges(cwd: string, message: string, options?: {
+    skipHooks?: boolean;
+}): boolean;

package/dist/git/repository.js

@@ -13,7 +13,7 @@ export function ensureCleanWorktree(cwd) {
         throw new Error('Working tree is dirty. Commit or stash changes before running Corydora.');
     }
 }
-export function commitAllChanges(cwd, message) {
+export function commitAllChanges(cwd, message, options = {}) {
     if (!hasDirtyWorktree(cwd)) {
         return false;
     }
@@ -22,7 +22,11 @@ export function commitAllChanges(cwd, message) {
     if (result.status === 0) {
         return false;
     }
-    execFileSync('git', ['commit', '-m', message], { cwd, stdio: 'ignore' });
+    const commitArgs = ['commit', '-m', message];
+    if (options.skipHooks) {
+        commitArgs.push('--no-verify');
+    }
+    execFileSync('git', commitArgs, { cwd, stdio: 'ignore' });
     return true;
 }
 //# sourceMappingURL=repository.js.map

package/dist/git/repository.js.map

@@ -1 +1 @@
-{"version":3,"file":"repository.js","sourceRoot":"","sources":["../../src/git/repository.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAE7D,MAAM,UAAU,MAAM,CAAC,IAAc,EAAE,GAAW;IAChD,OAAO,YAAY,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;AACrE,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,GAAW;IAC1C,OAAO,MAAM,CAAC,CAAC,QAAQ,EAAE,aAAa,CAAC,EAAE,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAW;IACvC,OAAO,MAAM,CAAC,CAAC,QAAQ,EAAE,gBAAgB,CAAC,EAAE,GAAG,CAAC,CAAC;AACnD,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,GAAW;IAC7C,IAAI,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;QAC1B,MAAM,IAAI,KAAK,CAAC,yEAAyE,CAAC,CAAC;IAC7F,CAAC;AACH,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,GAAW,EAAE,OAAe;IAC3D,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;QAC3B,OAAO,KAAK,CAAC;IACf,CAAC;IAED,YAAY,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC7D,MAAM,MAAM,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,MAAM,EAAE,UAAU,EAAE,SAAS,CAAC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC3F,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,YAAY,CAAC,KAAK,EAAE,CAAC,QAAQ,EAAE,IAAI,EAAE,OAAO,CAAC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IACzE,OAAO,IAAI,CAAC;AACd,CAAC"}
+{"version":3,"file":"repository.js","sourceRoot":"","sources":["../../src/git/repository.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAC;AAE7D,MAAM,UAAU,MAAM,CAAC,IAAc,EAAE,GAAW;IAChD,OAAO,YAAY,CAAC,KAAK,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;AACrE,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,GAAW;IAC1C,OAAO,MAAM,CAAC,CAAC,QAAQ,EAAE,aAAa,CAAC,EAAE,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;AAC3D,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAW;IACvC,OAAO,MAAM,CAAC,CAAC,QAAQ,EAAE,gBAAgB,CAAC,EAAE,GAAG,CAAC,CAAC;AACnD,CAAC;AAED,MAAM,UAAU,mBAAmB,CAAC,GAAW;IAC7C,IAAI,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;QAC1B,MAAM,IAAI,KAAK,CAAC,yEAAyE,CAAC,CAAC;IAC7F,CAAC;AACH,CAAC;AAED,MAAM,UAAU,gBAAgB,CAC9B,GAAW,EACX,OAAe,EACf,UAAmC,EAAE;IAErC,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,EAAE,CAAC;QAC3B,OAAO,KAAK,CAAC;IACf,CAAC;IAED,YAAY,CAAC,KAAK,EAAE,CAAC,KAAK,EAAE,IAAI,CAAC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC7D,MAAM,MAAM,GAAG,SAAS,CAAC,KAAK,EAAE,CAAC,MAAM,EAAE,UAAU,EAAE,SAAS,CAAC,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC3F,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,KAAK,CAAC;IACf,CAAC;IAED,MAAM,UAAU,GAAG,CAAC,QAAQ,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;IAC7C,IAAI,OAAO,CAAC,SAAS,EAAE,CAAC;QACtB,UAAU,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;IACjC,CAAC;IAED,YAAY,CAAC,KAAK,EAAE,UAAU,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC1D,OAAO,IAAI,CAAC;AACd,CAAC"}

package/dist/index.js

@@ -1,4 +1,5 @@
 #!/usr/bin/env node
+import { readFileSync } from 'node:fs';
 import { Command } from 'commander';
 import { runAgentsImportCommand } from './commands/agents-import.js';
 import { runAgentsListCommand } from './commands/agents-list.js';
@@ -13,10 +14,69 @@ import { runStopCommand } from './commands/stop.js';
 import { selectMainAction } from './ui/menu.js';
 import { createUi } from './ui/output.js';
 const program = new Command();
+const cliVersion = readCliVersion();
+function readCliVersion() {
+    const raw = readFileSync(new URL('../package.json', import.meta.url), 'utf8');
+    const parsed = JSON.parse(raw);
+    return typeof parsed.version === 'string' ? parsed.version : '0.0.0';
+}
+function formatHelpSections(sections) {
+    return sections
+        .map((section) => `\n${section.title}:\n${section.lines.map((line) => `  ${line}`).join('\n')}\n`)
+        .join('');
+}
+function addHelpSections(command, sections) {
+    command.addHelpText('after', formatHelpSections(sections));
+}
+function normalizeArgv(argv) {
+    const normalized = [...argv];
+    for (let index = 2; index < normalized.length; index += 1) {
+        if (normalized[index] === '--') {
+            break;
+        }
+        if (normalized[index] === '--v') {
+            normalized[index] = '--version';
+        }
+    }
+    return normalized;
+}
 program
     .name('corydora')
     .description('Provider-neutral overnight AI code scrubbing CLI')
+    .usage('[options] [command]')
+    .helpOption('-h, --help', 'Display help for command or subcommand')
+    .version(cliVersion, '-V, --version', 'Display CLI version')
+    .showSuggestionAfterError()
+    .showHelpAfterError('(run with --help for usage details)')
     .option('--json', 'Print machine-readable output', false);
+addHelpSections(program, [
+    {
+        title: 'Arguments',
+        lines: [
+            'No positional arguments are required at the top level.',
+            'Run a subcommand when you want explicit, non-interactive behavior.',
+        ],
+    },
+    {
+        title: 'Behavior',
+        lines: [
+            'Missing `.corydora.json`: runs `corydora init`.',
+            'Config present in a TTY: opens the interactive action menu.',
+            'Config present without a TTY: runs `corydora status`.',
+        ],
+    },
+    {
+        title: 'Examples',
+        lines: [
+            '$ corydora',
+            '$ corydora --version',
+            '$ corydora run --dry-run',
+            '$ corydora run --background',
+            '$ corydora agents import ./agents',
+            '$ corydora config validate',
+        ],
+    },
+]);
 program.action(async (_options, command) => {
     const options = command.optsWithGlobals();
     const ui = createUi(options.json);
@@ -47,8 +107,9 @@ program.action(async (_options, command) => {
     }
     await runInitCommand({ projectRoot, json: options.json }, ui);
 });
-program
+const initCommand = program
     .command('init')
+    .description('Scaffold Corydora config and project working files')
     .option('--yes', 'Accept defaults without prompting', false)
     .action(async (commandOptions) => {
     const ui = createUi(Boolean(program.opts().json));
@@ -58,13 +119,21 @@ program
         yes: Boolean(commandOptions.yes),
     }, ui);
 });
-program
+addHelpSections(initCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora init', '$ corydora init --yes', '$ corydora init --yes --json'],
+    },
+]);
+const runCommand = program
     .command('run')
+    .description('Start a scrub run for the current project')
     .option('--dry-run', 'Run without executing provider actions', false)
     .option('--background', 'Launch in tmux when available', false)
     .option('--foreground', 'Force foreground mode', false)
     .option('--resume', 'Resume the last recorded run state', false)
-    .option('--session-name <name>', 'Internal tmux session metadata')
+    .option('--no-verify', 'Skip git commit hooks while applying fixes', true)
+    .option('--session-name <name>', 'Override the generated tmux session name (internal use)')
     .action(async (commandOptions) => {
     const ui = createUi(Boolean(program.opts().json));
     await runRunCommand({
@@ -74,39 +143,119 @@ program
         background: Boolean(commandOptions.background),
         foreground: Boolean(commandOptions.foreground),
         resume: Boolean(commandOptions.resume),
+        skipCommitHooks: commandOptions.noVerify === false,
         sessionName: typeof commandOptions.sessionName === 'string' ? commandOptions.sessionName : undefined,
     }, ui);
 });
-program.command('status').action(async () => {
+addHelpSections(runCommand, [
+    {
+        title: 'Examples',
+        lines: [
+            '$ corydora run',
+            '$ corydora run --dry-run',
+            '$ corydora run --background',
+            '$ corydora run --resume',
+        ],
+    },
+]);
+const statusCommand = program
+    .command('status')
+    .description('Show the current or most recent run state')
+    .action(async () => {
     const ui = createUi(Boolean(program.opts().json));
     await runStatusCommand(resolveProjectRoot(process.cwd()), Boolean(program.opts().json), ui);
 });
-program.command('attach').action(async () => {
+addHelpSections(statusCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora status', '$ corydora status --json'],
+    },
+]);
+const attachCommand = program
+    .command('attach')
+    .description('Attach to a tmux-backed background run')
+    .action(async () => {
     await runAttachCommand(resolveProjectRoot(process.cwd()));
 });
-program.command('stop').action(async () => {
+addHelpSections(attachCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora attach'],
+    },
+]);
+const stopCommand = program
+    .command('stop')
+    .description('Request a graceful stop for an active run')
+    .action(async () => {
     const ui = createUi(Boolean(program.opts().json));
     await runStopCommand(resolveProjectRoot(process.cwd()), Boolean(program.opts().json), ui);
 });
-program.command('doctor').action(async () => {
+addHelpSections(stopCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora stop', '$ corydora stop --json'],
+    },
+]);
+const doctorCommand = program
+    .command('doctor')
+    .description('Check runtime availability and local prerequisites')
+    .action(async () => {
     const ui = createUi(Boolean(program.opts().json));
     await runDoctorCommand(resolveProjectRoot(process.cwd()), Boolean(program.opts().json), ui);
 });
-const agentsCommand = program.command('agents');
-agentsCommand.command('list').action(async () => {
+addHelpSections(doctorCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora doctor', '$ corydora doctor --json'],
+    },
+]);
+const agentsCommand = program
+    .command('agents')
+    .description('List builtin agents or import agent definitions from disk');
+const agentsListCommand = agentsCommand
+    .command('list')
+    .description('List builtin and imported agents')
+    .action(async () => {
     const ui = createUi(Boolean(program.opts().json));
     await runAgentsListCommand(resolveProjectRoot(process.cwd()), Boolean(program.opts().json), ui);
 });
-agentsCommand.command('import <dir>').action(async (sourceDirectory) => {
+addHelpSections(agentsListCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora agents list', '$ corydora agents list --json'],
+    },
+]);
+const agentsImportCommand = agentsCommand
+    .command('import')
+    .description('Import agent markdown files from a directory')
+    .argument('<dir>', 'Directory containing markdown agent definitions')
+    .action(async (sourceDirectory) => {
     const ui = createUi(Boolean(program.opts().json));
     await runAgentsImportCommand(resolveProjectRoot(process.cwd()), String(sourceDirectory), Boolean(program.opts().json), ui);
 });
-const configCommand = program.command('config');
-configCommand.command('validate').action(async () => {
+addHelpSections(agentsImportCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora agents import ./agents', '$ corydora agents import ./agents --json'],
+    },
+]);
+const configCommand = program
+    .command('config')
+    .description('Validate Corydora configuration files');
+const configValidateCommand = configCommand
+    .command('validate')
+    .description('Validate `.corydora.json` against the schema')
+    .action(async () => {
     const ui = createUi(Boolean(program.opts().json));
     await runConfigValidateCommand(resolveProjectRoot(process.cwd()), Boolean(program.opts().json), ui);
 });
-program.parseAsync(process.argv).catch((error) => {
+addHelpSections(configValidateCommand, [
+    {
+        title: 'Examples',
+        lines: ['$ corydora config validate', '$ corydora config validate --json'],
+    },
+]);
+program.parseAsync(normalizeArgv(process.argv)).catch((error) => {
     const message = error instanceof Error ? error.message : String(error);
     process.stderr.write(`${message}\n`);
     process.exit(1);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/queue/state.d.ts

@@ -3,6 +3,7 @@ export declare function loadTaskStore(projectRoot: string, config: CorydoraConfi
 export declare function saveTaskStore(projectRoot: string, config: CorydoraConfig, store: TaskStore): Promise<void>;
 export declare function loadRunState(projectRoot: string, config: CorydoraConfig): Promise<RunState | null>;
 export declare function saveRunState(projectRoot: string, config: CorydoraConfig, state: RunState): Promise<void>;
+export declare function saveRunArtifact(projectRoot: string, config: CorydoraConfig, state: RunState): Promise<void>;
 export declare function mergeScanFindings(store: TaskStore, findings: ScanFinding[]): {
     store: TaskStore;
     added: TaskRecord[];

package/dist/queue/state.js

@@ -45,6 +45,12 @@ export async function loadRunState(projectRoot, config) {
 export async function saveRunState(projectRoot, config, state) {
     await writeFile(runStatePath(projectRoot, config), `${JSON.stringify(state, null, 2)}\n`, 'utf8');
 }
+function runArtifactPath(projectRoot, config, runId) {
+    return resolve(projectRoot, config.paths.runsDir, `${runId}.json`);
+}
+export async function saveRunArtifact(projectRoot, config, state) {
+    await writeFile(runArtifactPath(projectRoot, config, state.runId), `${JSON.stringify(state, null, 2)}\n`, 'utf8');
+}
 export function mergeScanFindings(store, findings) {
     const nextTasks = [...store.tasks];
     const added = [];

package/dist/queue/state.js.map

@@ -1 +1 @@
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package/dist/runtime/run-session.d.ts

@@ -7,5 +7,7 @@ export interface RunSessionOptions {
     resume: boolean;
     sessionName?: string;
     forceCurrentBranch?: boolean;
+    skipCommitHooks?: boolean;
+    logToConsole?: boolean;
 }
 export declare function runCorydoraSession(options: RunSessionOptions): Promise<RunState>;

package/dist/runtime/run-session.js

@@ -1,4 +1,4 @@
-import { readFile } from 'node:fs/promises';
+import { appendFile, readFile } from 'node:fs/promises';
 import { existsSync } from 'node:fs';
 import { randomUUID } from 'node:crypto';
 import { resolve } from 'node:path';
@@ -7,7 +7,7 @@ import { discoverCandidateFiles } from '../filesystem/discovery.js';
 import { detectProjectFingerprint } from '../filesystem/project.js';
 import { commitAllChanges } from '../git/repository.js';
 import { prepareIsolationContext } from '../git/isolation.js';
-import { countTasksByStatus, loadRunState, loadTaskStore, mergeScanFindings, saveRunState, saveTaskStore, claimNextTask, updateTaskStatus, } from '../queue/state.js';
+import { countTasksByStatus, loadRunState, loadTaskStore, mergeScanFindings, saveRunArtifact, saveRunState, saveTaskStore, claimNextTask, updateTaskStatus, } from '../queue/state.js';
 import { renderTaskQueues } from '../queue/render.js';
 import { buildFixPrompt, buildScanPrompt } from './prompts.js';
 import { getRuntimeAdapter } from '../providers/index.js';
@@ -15,6 +15,20 @@ import { noteFileProcessed, restoreSchedulerState, selectScanBatch } from './sch
 function nowIso() {
     return new Date().toISOString();
 }
+function createRunLogger(logFilePath, emitToConsole) {
+    return async (message) => {
+        const line = `[${nowIso()}] ${message}\n`;
+        if (emitToConsole) {
+            process.stdout.write(line);
+        }
+        try {
+            await appendFile(logFilePath, line, 'utf8');
+        }
+        catch {
+            // Ignore logging errors to keep runtime execution unchanged.
+        }
+    };
+}
 async function readFileIfExists(path) {
     if (!existsSync(path)) {
         return '';
@@ -25,16 +39,19 @@ async function saveAllState(projectRoot, config, store, state) {
     await saveTaskStore(projectRoot, config, store);
     await renderTaskQueues(projectRoot, config, store);
     await saveRunState(projectRoot, config, state);
+    await saveRunArtifact(projectRoot, config, state);
 }
 async function processScans(options) {
     const adapter = getRuntimeAdapter(options.config.runtime.provider);
     const fingerprint = detectProjectFingerprint(options.workRoot);
     let nextState = options.state;
     let nextStore = options.store;
+    await options.logger(`Scanning ${options.files.length} files.`);
     const concurrency = Math.max(1, options.config.scan.maxConcurrentScans);
     for (let index = 0; index < options.files.length; index += concurrency) {
         const slice = options.files.slice(index, index + concurrency);
         const results = await Promise.all(slice.map(async (file) => {
+            await options.logger(`Starting scan: ${file}`);
             const fileContent = await readFile(resolve(options.workRoot, file), 'utf8');
             const prompt = buildScanPrompt({
                 filePath: file,
@@ -69,6 +86,7 @@ async function processScans(options) {
             if (item.success) {
                 const merged = mergeScanFindings(nextStore, item.result.tasks);
                 nextStore = merged.store;
+                await options.logger(`Scan complete: ${item.file} (${item.result.tasks.length} raw, ${merged.added.length} new tasks).`);
                 nextState = {
                     ...nextState,
                     scheduler: noteFileProcessed(nextState.scheduler, item.file, true),
@@ -77,6 +95,7 @@ async function processScans(options) {
                 };
             }
             else {
+                await options.logger(`Scan failed: ${item.file} -> ${item.result}`);
                 nextState = {
                     ...nextState,
                     scheduler: noteFileProcessed(nextState.scheduler, item.file, false),
@@ -104,6 +123,7 @@ async function processSingleFix(options) {
         phase: 'fix',
         updatedAt: nowIso(),
     };
+    await options.logger(`Fix started: ${claimedTask.id} ${claimedTask.title}`);
     await saveAllState(options.projectRoot, options.config, nextStore, nextState);
     const fileContent = await readFileIfExists(resolve(options.workRoot, claimedTask.file));
     const prompt = buildFixPrompt({
@@ -127,7 +147,7 @@ async function processSingleFix(options) {
         });
         const committed = adapter.executionMode === 'fake'
             ? false
-            : commitAllChanges(options.workRoot, `corydora: ${claimedTask.category}: ${claimedTask.title.slice(0, 60)}`);
+            : commitAllChanges(options.workRoot, `corydora: ${claimedTask.category}: ${claimedTask.title.slice(0, 60)}`, options.skipCommitHooks ? { skipHooks: true } : {});
         nextStore = updateTaskStatus(nextStore, claimedTask.id, committed || result.changedFiles.length > 0 ? 'done' : 'blocked', committed || result.changedFiles.length > 0 ? undefined : 'No changes were produced.');
         nextState = {
             ...nextState,
@@ -143,6 +163,7 @@ async function processSingleFix(options) {
         };
     }
     catch (error) {
+        await options.logger(`Fix failed: ${claimedTask.id} ${error instanceof Error ? error.message : String(error)}`);
         nextStore = updateTaskStatus(nextStore, claimedTask.id, 'failed', error instanceof Error ? error.message : String(error));
         nextState = {
             ...nextState,
@@ -166,6 +187,7 @@ export async function runCorydoraSession(options) {
         ? await loadRunState(options.projectRoot, options.config)
         : null;
     const runId = existingRun?.runId ?? randomUUID().slice(0, 8);
+    const logger = createRunLogger(resolve(options.projectRoot, options.config.paths.logsDir, `${runId}.log`), options.logToConsole ?? true);
     const isolation = prepareIsolationContext({
         projectRoot: options.projectRoot,
         config: options.config,
@@ -218,75 +240,102 @@ export async function runCorydoraSession(options) {
         updatedAt: nowIso(),
     };
     await saveAllState(options.projectRoot, options.config, store, state);
+    await logger(`Run ${runId} prepared (isolation=${isolation.mode}, branch=${isolation.branchName ?? 'current-branch'}).`);
     const deadline = Date.now() + options.config.execution.maxRuntimeMinutes * 60_000;
-    while (Date.now() < deadline) {
-        if (await shouldStop(options.projectRoot, options.config)) {
+    try {
+        while (Date.now() < deadline) {
+            if (await shouldStop(options.projectRoot, options.config)) {
+                state = {
+                    ...state,
+                    status: 'stopped',
+                    phase: 'idle',
+                    finishedAt: nowIso(),
+                    updatedAt: nowIso(),
+                };
+                await logger('Stop requested. Finishing with stopped status.');
+                break;
+            }
+            const latestFiles = discoverCandidateFiles(isolation.workRoot, {
+                includeExtensions: options.config.scan.includeExtensions,
+                excludeDirectories: options.config.scan.excludeDirectories,
+            });
             state = {
                 ...state,
-                status: 'stopped',
+                scheduler: restoreSchedulerState(state.scheduler, latestFiles),
+                updatedAt: nowIso(),
+            };
+            const scanBatch = selectScanBatch(state.scheduler, latestFiles, options.config.scan.batchSize);
+            if (scanBatch.length > 0) {
+                await logger(`Scan batch selected (${scanBatch.length}): ${scanBatch.join(', ')}`);
+                const processed = await processScans({
+                    files: scanBatch,
+                    projectRoot: options.projectRoot,
+                    workRoot: isolation.workRoot,
+                    config: options.config,
+                    agents: options.agents,
+                    state,
+                    store,
+                    logger,
+                });
+                state = {
+                    ...processed.state,
+                    phase: 'scan',
+                };
+                store = processed.store;
+                await saveAllState(options.projectRoot, options.config, store, state);
+            }
+            const pendingCount = countTasksByStatus(store, 'pending');
+            const noRemainingFiles = scanBatch.length === 0;
+            const shouldFix = pendingCount >= options.config.execution.backlogTarget ||
+                (noRemainingFiles && pendingCount > 0);
+            if (shouldFix && state.completedFixCount < options.config.execution.maxFixesPerRun) {
+                const fixed = await processSingleFix({
+                    projectRoot: options.projectRoot,
+                    workRoot: isolation.workRoot,
+                    config: options.config,
+                    state,
+                    store,
+                    logger,
+                    ...(options.skipCommitHooks ? { skipCommitHooks: true } : {}),
+                });
+                state = fixed.state;
+                store = fixed.store;
+                if (fixed.fixedTaskId) {
+                    await logger(`Fix attempted for task ${fixed.fixedTaskId}.`);
+                }
+                await saveAllState(options.projectRoot, options.config, store, state);
+            }
+            const exhaustedFiles = selectScanBatch(state.scheduler, latestFiles, 1).length === 0;
+            const exhaustedTasks = countTasksByStatus(store, 'pending') === 0;
+            if (exhaustedFiles && exhaustedTasks) {
+                await logger('All scan and task queues are empty. Finishing.');
+                break;
+            }
+        }
+        if (state.status === 'running') {
+            state = {
+                ...state,
+                status: 'completed',
+                phase: 'idle',
                 finishedAt: nowIso(),
                 updatedAt: nowIso(),
             };
-            await saveAllState(options.projectRoot, options.config, store, state);
-            return state;
+            await logger('Run completed.');
         }
-        const latestFiles = discoverCandidateFiles(isolation.workRoot, {
-            includeExtensions: options.config.scan.includeExtensions,
-            excludeDirectories: options.config.scan.excludeDirectories,
-        });
+    }
+    catch (error) {
         state = {
             ...state,
-            scheduler: restoreSchedulerState(state.scheduler, latestFiles),
+            status: 'failed',
+            phase: 'idle',
+            finishedAt: nowIso(),
             updatedAt: nowIso(),
         };
-        const scanBatch = selectScanBatch(state.scheduler, latestFiles, options.config.scan.batchSize);
-        if (scanBatch.length > 0) {
-            const processed = await processScans({
-                files: scanBatch,
-                projectRoot: options.projectRoot,
-                workRoot: isolation.workRoot,
-                config: options.config,
-                agents: options.agents,
-                state,
-                store,
-            });
-            state = {
-                ...processed.state,
-                phase: 'scan',
-            };
-            store = processed.store;
-            await saveAllState(options.projectRoot, options.config, store, state);
-        }
-        const pendingCount = countTasksByStatus(store, 'pending');
-        const noRemainingFiles = scanBatch.length === 0;
-        const shouldFix = pendingCount >= options.config.execution.backlogTarget ||
-            (noRemainingFiles && pendingCount > 0);
-        if (shouldFix && state.completedFixCount < options.config.execution.maxFixesPerRun) {
-            const fixed = await processSingleFix({
-                projectRoot: options.projectRoot,
-                workRoot: isolation.workRoot,
-                config: options.config,
-                state,
-                store,
-            });
-            state = fixed.state;
-            store = fixed.store;
-            await saveAllState(options.projectRoot, options.config, store, state);
-        }
-        const exhaustedFiles = selectScanBatch(state.scheduler, latestFiles, 1).length === 0;
-        const exhaustedTasks = countTasksByStatus(store, 'pending') === 0;
-        if (exhaustedFiles && exhaustedTasks) {
-            break;
-        }
+        await logger(`Run failed: ${error instanceof Error ? error.message : String(error)}`);
+    }
+    finally {
+        await saveAllState(options.projectRoot, options.config, store, state);
     }
-    state = {
-        ...state,
-        status: 'completed',
-        phase: 'idle',
-        finishedAt: nowIso(),
-        updatedAt: nowIso(),
-    };
-    await saveAllState(options.projectRoot, options.config, store, state);
     return state;
 }
 //# sourceMappingURL=run-session.js.map

package/dist/runtime/run-session.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "corydora",
-  "version": "0.1.0",
+  "version": "0.3.0",
   "description": "Provider-neutral overnight AI code scrubbing CLI.",
   "keywords": [
     "ai",
@@ -37,6 +37,10 @@
     "build": "pnpm clean && tsc -p tsconfig.json",
     "clean": "rimraf dist coverage .artifacts artifacts",
     "check": "pnpm lint && pnpm format:check && pnpm typecheck && pnpm test && pnpm build",
+    "changelog:generate": "pnpm dlx release-please release-pr --config-file release-please-config.json --manifest-file .release-please-manifest.json",
+    "release:plan": "pnpm changelog:generate",
+    "release:publish": "pnpm prepublishOnly && npm publish",
+    "release:check": "pnpm prepublishOnly",
     "commit": "cz",
     "dev": "node --import tsx ./src/index.ts",
     "format": "prettier . --write",